Resource Type:
Polypeptide
Name:
XM_017392483.1
Identifier:
XM_017392483.1-protein
Sequence:
MASRSDKSSKRRKKKRVDDTLTTSSSSSSESSSSDSEDNGKRSRRRRKHS
KRHRSRERSSSRRHRDDKREKRRKHRRREKKNASESESESGSESERVRDK
PEDVIRFILNEFSGVAADLEQLLKMIDDGQAVDISGLSEKSLVKHLRKLF
LSLDLKESHELVFLLPPNVCPTLKVVGSIIHPNVEPPVQNIDNPAPEIDV
QEVPSDVNTRHMPEDFNMKLPSPRQDVAGPKRSFCRVIGPEMPSAELLAA
AAKLTEAEAELRDAEMDGGDGGLFIGPPPPAVVKEAESANEAERFEEVTR
IMGADVDSPYDVVGVNRNMPAENIKKRYWKLSLMVHPDKCPHPQANQAFI
ILNKAFKDLQDPDKRKAMDDKIIQKEEQERFKVELKEMREAAHWRRLQGL
SMEGDEALLADMDVKVEKKRDEWMTTLPPERKPGVTTQSTKFNRNTKEGR
GDTSAWTDTPLERAQRAKMNYLEAYNTATALASNDQQNQTTNMDAELVDK
YNKAKRSKSLVEKHQETAGKRSKKKAKQDSSKDEWQGQHPWKPWDREKDL
TAGRQNVKLDAENMSQGLSSRFSSGSFQRNFL
Sequence Length:
582
Sequence Checksum:
6439d6c198cf6339c76a9ab87383acc9
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017392483.1, derives from mRNA, XM_017392483.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017392483.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017392483.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U818 ((uncharacterized protein LOC105176044 {ECO:0000313|RefSeq:XP_011097026.1}))
HSP 1 Score: 673.7 bits (1737), Expect = 0.000e+0
Identity = 365/545 (66.97%), Postives = 439/545 (80.55%), Query Frame = 0
Match: A0A6I9U818 ((uncharacterized protein LOC105176044 {ECO:0000313|RefSeq:XP_011097026.1}))
HSP 1 Score: 673.7 bits (1737), Expect = 0.000e+0
Identity = 365/545 (66.97%), Postives = 439/545 (80.55%), Query Frame = 0
Query: 52 RHRSRERSSSRRHRDDKREKRRKHRRREKKNA-------------SESESESGSESERVRDKPEDVIRFILNEFSGVAADLEQLLKMIDDGQAVDISGLSEKSLVKHLRKLFLSLDLKESHELVFLLPPNVCPTLKVVGSIIHPNVEPPVQNIDNPAPEIDVQEVPSDVNTRHMPEDFNMKLPSPRQDVAGPKRSFCRVIGPEMPSAELLAAAAKLTEAEAELRDAEMDGGDGGLFIGPPPPAVVKEAESANEAERFEEVTRIMGADVDSPYDVVGVNRNMPAENIKKRYWKLSLMVHPDKCPHPQANQAFIILNKAFKDLQDPDKRKAMDDKIIQKEEQERFKVELKEMREAAHWRRLQGLSMEGDEALLADMDVKVEKKRDEWMTTLPPERKPGVTTQS-TKFNRNTKEGRGDTSAWTDTPLERAQRAKMNYLEAYNTATALASNDQQNQTTNMDAELVDKYNKAKRSKSLVEKHQETAGKRSKKKAKQDSSKDEWQGQHPWKPWDREKDLTAGRQNVKLDAENMSQGLSSRFSSGSFQRNFL 582
RH+ R SRR+ D+K +K++KH RR+++ ++S+ S ES+ P+DVI+++L EF VA DLEQLL+MIDDGQAVDI GLSE+SLVKHLR+LF+SL+LKE+ + VFLL PTL VVG II +++PP + +DN P+ D VP D H+ ++ + ++D GP+R RVIGPEMPSAELLAAAAKLTEAEAELR+AE+DG D LFIGPPPPAVV EAESANEAERFEE+TRI+GA+ DSPYD++GVN+NM EN+KKRYWKLSLMVHPDKC HPQA+QAF+ LNKAFKDLQDPDKRKA+DDKI KEEQE F+ ELK MREAA WRRLQG+SMEGD+ LLA+MD KV +KRDEWMTTLPPERKPG+T S T+F++++KEGRGDTSAWTDTP ERAQ+AKMNYLEAYN A ALASN+Q+ + N DAELVD+YNKAKRSKSLVEKHQ++ KRSK+K KQ+S+K+EW+G HPWKPWDREKDLTAGRQNVKLDA+NM+QGLSSRFSSGSFQRNFL
Sbjct: 4 RHQHR-NERSRRNDDEKTKKKKKHSRRDREKRKRSERERESKRRRNDSDDNSEFESDDESSNPQDVIKYVLKEFPAVAGDLEQLLRMIDDGQAVDIRGLSERSLVKHLRRLFISLNLKENGDQVFLLRDKASPTLDVVGPIIRSHLQPP-KELDNLGPQTDSHSVPPDSECGHVADNVD----DTKKDSIGPRR---RVIGPEMPSAELLAAAAKLTEAEAELREAELDG-DTELFIGPPPPAVVTEAESANEAERFEEITRIIGAEEDSPYDILGVNKNMSPENMKKRYWKLSLMVHPDKCSHPQAHQAFVKLNKAFKDLQDPDKRKALDDKIKLKEEQEAFQAELKAMREAAQWRRLQGISMEGDDILLAEMDAKVAQKRDEWMTTLPPERKPGMTMHSTTRFSKSSKEGRGDTSAWTDTPSERAQKAKMNYLEAYNEAAALASNEQEKKRVNADAELVDQYNKAKRSKSLVEKHQDSLTKRSKRKGKQESAKEEWEGNHPWKPWDREKDLTAGRQNVKLDADNMAQGLSSRFSSGSFQRNFL 538
BLAST of XM_017392483.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R2D3 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 672.159 bits (1733), Expect = 0.000e+0
Identity = 366/521 (70.25%), Postives = 425/521 (81.57%), Query Frame = 0
Match: A0A2R6R2D3 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 672.159 bits (1733), Expect = 0.000e+0
Identity = 366/521 (70.25%), Postives = 425/521 (81.57%), Query Frame = 0
Query: 71 KRRKHRRREKKNASESESESGSES--ERVRD-------KPEDVIRFILNEFSGVAADLEQLLKMIDDGQAVDISGLSEKSLVKHLRKLFLSLDLKESHELVFLLPPNVCPTLKVVGSIIHPNVEPPVQNIDNPAPEIDVQEVPSDVNTRHMPEDFNMKLPSPRQDVAGPKRSFCRVIGPEMPSAELLAAAAKLTEAEAELRDAEMDGGDGGLFIGPPPPAVVKEAESANEAERFEEVTRIMGADVDSPYDVVGVNRNMPAENIKKRYWKLSLMVHPDKCPHPQANQAFIILNKAFKDLQDPDKRKAMDDKIIQKEEQERFKVELKEMREAAHWRRLQGLSMEGDEALLADMDVKVEKKRDEWMTTLPPERKPGVTTQSTKFNRNTKEGRGDTSAWTDTPLERAQRAKMNYLEAYNTATALASNDQQNQTTNMDAELVDKYNKAKRSKSLVEKHQETAGKRSKKKAKQDSSKDEWQGQHPWKPWDREKDLTAGRQNVKLDAENMSQGLSSRFSSGSFQRNFL 582
K RK RR K+ S+S+ + SE ER RD +PE+++R+IL EF GVAADLEQLL+MIDDGQAVDISGLSE+SLVKHL+KLF SL+LKE+ VFLLPPNV PT++++GSIIH P ++ + D+ VP D RH +D NM +P P ++ PK+ R IGPEMPSAELLAAAAKLTEAEAELR+AEM+ D +FIGPPPPAVV EAESANEAERFEEVTRIMGA+VDSPYDV+GVNRNM A+N+KKRYWKLSLMVHPDKC HPQA+QAFI LNKAFKDLQDPDKRKAMD+KI KEEQE FK ELK MREAA WRRLQG+SMEGD+ LLADMDVKVE KRDEWMTTLPPERKPG+T Q+T F++ +K+GRGDTS WTDTP E+AQ+AKMNYLEAYN A AL +Q ++ T+ DA +VD+YNKAKRSKSLVEKHQE+A SKKK+KQ+ +K+EW+GQHPWKPWDREKDLTAGR+ VK D ENMSQGLSSRFSSGSFQRNFL
Sbjct: 82 KHRKSRREGKRKGSDSDFDGESEKARERSRDCDSKSRIEPENLVRYILKEFPGVAADLEQLLQMIDDGQAVDISGLSERSLVKHLKKLFQSLNLKENGNQVFLLPPNVRPTMEIIGSIIHLKQLQPANSVSSK----DIHSVPPDGECRHEVDD-NMAMPCPIENADAPKK---RKIGPEMPSAELLAAAAKLTEAEAELREAEMEE-DTEVFIGPPPPAVVIEAESANEAERFEEVTRIMGAEVDSPYDVLGVNRNMSADNMKKRYWKLSLMVHPDKCSHPQAHQAFIKLNKAFKDLQDPDKRKAMDEKIRLKEEQEEFKAELKAMREAAQWRRLQGISMEGDDILLADMDVKVEPKRDEWMTTLPPERKPGMTMQTTTFSKTSKDGRGDTSIWTDTPSEKAQKAKMNYLEAYNEAAALVYKEQDSKRTDSDAAMVDEYNKAKRSKSLVEKHQESARSSSKKKSKQERAKEEWEGQHPWKPWDREKDLTAGRKTVKFDGENMSQGLSSRFSSGSFQRNFL 593
BLAST of XM_017392483.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BD00 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 661.374 bits (1705), Expect = 0.000e+0
Identity = 356/489 (72.80%), Postives = 412/489 (84.25%), Query Frame = 0
Match: A0A5B7BD00 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 661.374 bits (1705), Expect = 0.000e+0
Identity = 356/489 (72.80%), Postives = 412/489 (84.25%), Query Frame = 0
Query: 96 RVRDKPEDVIRFILNEFSGVAADLEQLLKMIDDGQAVDISGLSEKSLVKHLRKLFLSLDLKESHELVFLLPPNVCPTLKVVGSIIHPNVEPPVQNIDNPAPEIDVQEVPSDVNTRHMPEDFNMKLPSPRQDVAGPKRSFCRVIGPEMPSAELLAAAAKLTEAEAELRDAEMDGGDGGLFIGPPPPAVVKEAESANEAERFEEVTRIMGADVDSPYDVVGVNRNMPAENIKKRYWKLSLMVHPDKCPHPQANQAFIILNKAFKDLQDPDKRKAMDDKIIQKEEQERFKVELKEMREAAHWRRLQGLSMEGDEALLADMDVKVEKKRDEWMTTLPPERKPGVTTQSTKFNRNTKEGRGDTSAWTDTPLERAQRAKMNYLEAYNTATALASNDQQNQTTNMDAELVDKYNKAKRSKSLVEKHQETAGKRSKKKAKQDS--SKDEWQGQHPWKPWDREKDLTAGRQNVKLDAENMSQGLSSRFSSGSFQRNFL 582
R R +PEDV+R IL EF GVA DLEQLL+MIDDGQAVDI GLSE+SLVKHL+KL SL+LKE+ E VFLLP NV PTL+VVG II +VEP Q + +P D+Q +P D+ R +D N+ +P P +D A P+R R+IGPEMPSAELLAAAAKLTEAEAELR+AE+DG D +FIGPPPPAVV EAESANEAERFEEVTRIM A+VDSPYDV+GVNRNM A+NIKKRYWKLSLMVHPDKC HPQA+QAFI LNK+FKDLQDPDKRKA+D+KII KEEQE FK ELK +REAA WR LQG+SMEGD LLA+MDV VE KRDEWMTTLPPERKPG+T Q+TKF+RN+K+GRGDTS WTDTP +RAQ+AKMNYLEAYN A AL S +Q+ + TN DA+LVD+YNKAKRSKSLVEKH+ET RSK+K+KQ+ K+EW+GQHPWKPWDREKDLTAGR+ +K DA+NM++GLSSRFSSGSFQRNFL
Sbjct: 118 RSRVEPEDVVRHILKEFPGVAGDLEQLLQMIDDGQAVDIKGLSERSLVKHLKKLLWSLNLKENGEQVFLLPSNVRPTLEVVGPIIRSHVEPQQQQLGSPN---DIQSIPLDLECRQEVDDNNLAMPFPEEDAAAPRR---RMIGPEMPSAELLAAAAKLTEAEAELREAELDG-DSDVFIGPPPPAVVAEAESANEAERFEEVTRIMEAEVDSPYDVLGVNRNMLADNIKKRYWKLSLMVHPDKCSHPQAHQAFIKLNKSFKDLQDPDKRKALDEKIILKEEQEAFKAELKALREAAQWRHLQGISMEGDAELLAEMDVNVEPKRDEWMTTLPPERKPGMTMQTTKFSRNSKDGRGDTSVWTDTPSDRAQKAKMNYLEAYNEAAALTSKEQEKKGTNSDAQLVDEYNKAKRSKSLVEKHKETVQSRSKRKSKQEPGLGKEEWEGQHPWKPWDREKDLTAGRKTIKFDADNMAEGLSSRFSSGSFQRNFL 599
BLAST of XM_017392483.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A5AXU1 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 656.366 bits (1692), Expect = 0.000e+0
Identity = 352/507 (69.43%), Postives = 417/507 (82.25%), Query Frame = 0
Match: A5AXU1 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 656.366 bits (1692), Expect = 0.000e+0
Identity = 352/507 (69.43%), Postives = 417/507 (82.25%), Query Frame = 0
Query: 79 EKKNASESESESGSESERVRDKPEDVIRFILNEFSGVAADLEQLLKMIDDGQAVDISGLSEKSLVKHLRKLFLSLDLKESHELVFLLPPNVCPTLKVVGSIIHPNVEPPVQNIDNPAPEIDVQEVPSDVNTRHMPEDFNMKLPSPRQDVAGPKRSFCRVIGPEMPSAELLAAAAKLTEAEAELRDAEMDGGDGGLFIGPPPPAVVKEAESANEAERFEEVTRIMGADVDSPYDVVGVNRNMPAENIKKRYWKLSLMVHPDKCPHPQANQAFIILNKAFKDLQDPDKRKAMDDKIIQKEEQERFKVELKEMREAAHWRRLQGLSMEGDEALLADMDVKVEKKRDEWMTTLPPERKPGVTTQSTKFNRNTKEGRGDTSAWTDTPLERAQRAKMNYLEAYNTATALASNDQQNQTTNMDAELVDKYNKAKRSKSLVEK-HQETAGKRSKKKAKQDSS--KDEWQGQHPWKPWDREKDLTAGRQNVKLDAENMSQGLSSRFSSGSFQRNFL 582
E ++ S S ++ SE R R +P V+R+IL +F GVA DLEQLL+MIDDGQAVDI GLSE+SL+KHL+KLFLSL+LKE+ + VFLLP V PTL+VVG ++ N+EP + + + P D +P +V + ++ +M + P+ D + PKR RVIGPEMPSAELLAAAAKLTEA AELR+ E D D +FIGPPPPAVV EAESANEAERFEEVTRIMG + DSPYDV+GVN NM +N+KKRYWKLSLMVHPDKCPHPQA+QAFIILNKAFKDLQDPDKRKA+D+KI KEEQE FK ELK MREAAHWRRLQG+SMEGD+ LLADM+VKVE KRDEWMTTLPPERKPG+T QSTKF+R++KEGRGDTS WTDTP +RAQ+AK+NYLEAYN A ALASN+ + + T+ DA+LVDKYNKAKRSKSLV+K H+E A K SK+KAKQ K+EW GQHPWKPWDREKDLTAGRQ+VKLDA+NM++GL+SRFSSG+FQRNFL
Sbjct: 71 ESEDGSRSSTDEDSELRRSRVEPRAVVRYILKKFPGVATDLEQLLQMIDDGQAVDIKGLSERSLIKHLKKLFLSLNLKENGDRVFLLPSKVRPTLEVVGPMLQSNIEPKEEQLGH-VPN-DKLSLPPEVEGGQVLDENDMVVQCPKVDASPPKR---RVIGPEMPSAELLAAAAKLTEAGAELREVEFDE-DSEIFIGPPPPAVVAEAESANEAERFEEVTRIMGVETDSPYDVLGVNLNMSVDNVKKRYWKLSLMVHPDKCPHPQAHQAFIILNKAFKDLQDPDKRKALDEKIKLKEEQEAFKAELKAMREAAHWRRLQGISMEGDDELLADMEVKVEPKRDEWMTTLPPERKPGMTMQSTKFSRSSKEGRGDTSVWTDTPSDRAQKAKINYLEAYNEAAALASNEIEKKRTSSDADLVDKYNKAKRSKSLVQKHHEEAASKGSKRKAKQQPQLEKEEWVGQHPWKPWDREKDLTAGRQSVKLDADNMAEGLASRFSSGNFQRNFL 571
BLAST of XM_017392483.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103XMQ4 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 649.432 bits (1674), Expect = 0.000e+0
Identity = 372/552 (67.39%), Postives = 433/552 (78.44%), Query Frame = 0
Match: A0A103XMQ4 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 649.432 bits (1674), Expect = 0.000e+0
Identity = 372/552 (67.39%), Postives = 433/552 (78.44%), Query Frame = 0
Query: 54 RSRERSSSRRHRDDKREKRRKHRRREKKNASESESESGSESERVRDKPEDVIRFILNEFSGVAADLEQLLKMIDDGQAVDISGLSEKSLVKHLRKLFLSLDLKESHELVFLLPPNVCPTLKVVGSIIHPNVEPPVQNIDNPAPEIDVQ-EVPSDVNTRHMPEDFNMKLPSPRQDVAGPKRSFCRVIGPEMPSAELLAAAAKLTEAEAELRDAEMDGGDGGLFIGPPPPAVVKEAESANEAERFEEVTRIMGADVDSPYDVVGVNRNMPAENIKKR----------------YWKLSLMVHPDKCPHPQANQAFIILNKAFKDLQDPDKRKAMDDKIIQKEEQERFKVELKEMREAAHWRRLQGLSMEGDEALLADMDVKVEKKRDEWMTTLPPERKPGVTT-QSTK-FNRNTKEGRGDTSAWTDTPLERAQRAKMNYLEAYNTATALASNDQQNQTTNM-DAELVDKYNKAKRSKSLVEKHQETAGKRSKKKAK---QDSSKDEWQGQHPWKPWDREKDLTAGRQNVKLDAENMSQGLSSRFSSGSFQRNFL 582
+ R++ SSRR + RE +RK + ++ + S +S R P DV+++IL EF VA DLEQLL+MIDDGQAVDISGLSEKSLV++LRKLFLSL L E+ LVFLLP +V PTL+VVG++I P +E IDN D+ E P N H+P D KLP ++DVA P + RVIGP MPSAELLAAAAKLTEAEAELR+AE+ G D LFIGPPPPAVV EA SAN+AERFEEVTRIMGA++D+PYD+VGVNRNM A+NIKKR YWKLSLMVHPDKCPHP+A+QAFI LNKAFKDLQDP KRKAMDDKI +KEE+ERFK+ELK MREAA WRRLQG+SMEGD+ALLADMDVK E++RDEWMTTLPPERKPGV T QSTK F+R ++EGRGDTSAWTDTP +RAQ+AKMNYLEAYN A ALA++D + +T+N DAE+VDKYNKAKRSKSLVEKHQE + RSKKK+K Q+ K EW+G HPWKPWDREKDLTAGRQ VKLDAENM+QGL+SRFSSGSFQRNFL
Sbjct: 163 KDRKKGSSRRRSN--REGKRKVSDSDTESEEKGYGFSDGDSNLPRSDPVDVVKYILKEFPAVADDLEQLLRMIDDGQAVDISGLSEKSLVQYLRKLFLSLSLNENGRLVFLLPSDVRPTLEVVGAVIRPKLETQGPLIDNHDQHNDLSAEQP---NEEHVPADGGSKLPCAQEDVAAPSK---RVIGPAMPSAELLAAAAKLTEAEAELREAEV-GEDDVLFIGPPPPAVVHEAASANDAERFEEVTRIMGAEIDNPYDIVGVNRNMQADNIKKRQAVFTIYCSFRFLLSIYWKLSLMVHPDKCPHPEAHQAFIKLNKAFKDLQDPVKRKAMDDKIDEKEEKERFKLELKAMREAAQWRRLQGISMEGDDALLADMDVKEERRRDEWMTTLPPERKPGVATQQSTKSFSRTSREGRGDTSAWTDTPSDRAQKAKMNYLEAYNVAAALAADDLEKKTSNNDDAEMVDKYNKAKRSKSLVEKHQEASRVRSKKKSKVEGQEKQKQEWEGDHPWKPWDREKDLTAGRQKVKLDAENMAQGLTSRFSSGSFQRNFL 705
BLAST of XM_017392483.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2Z7C4R5 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0
Identity = 337/497 (67.81%), Postives = 399/497 (80.28%), Query Frame = 0
Match: A0A2Z7C4R5 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0
Identity = 337/497 (67.81%), Postives = 399/497 (80.28%), Query Frame = 0
Query: 89 ESGSESERVRDKPEDVIRFILNEFSGVAADLEQLLKMIDDGQAVDISGLSEKSLVKHLRKLFLSLDLKESHELVFLLPPNVCPTLKVVGSIIHPNVEPPVQ--NIDNPAPEIDVQEVPSDVNTRHMPEDFNMKLPSPRQDVAGPKRSFCRVIGPEMPSAELLAAAAKLTEAEAELRDAEMDGGDGGLFIGPPPPAVVKEAESANEAERFEEVTRIMGADVDSPYDVVGVNRNMPAENIKKRYWKLSLMVHPDKCPHPQANQAFIILNKAFKDLQDPDKRKAMDDKIIQKEEQERFKVELKEMREAAHWRRLQGLSMEGDEALLADMDVKVEKKRDEWMTTLPPERKPGVTTQSTKFNRNTKEGRGDTSAWTDTPLERAQRAKMNYLEAYNTATALASNDQQNQTTNMDAELVDKYNKAKRSKSLVEKHQETAGK-RSKKKAKQDSSKDEWQGQHPWKPWDREKDLTAGRQNVKLDAENMSQGLSSRFSSGSFQRNFL 582
ESGS S+ + PE+V+++IL EF VA DLEQLL MID GQAVDI GLSE+SLVKHLR+LF+ L+LKE+ + +FLLP PTLKVVG II + P Q ++D+P V + + +D P++D GP+R R IGP+MPSAELLAAAA+LT AEAELR+AEMDG D LFIGPPPPA+VKEAES NEAERFEE+TRI+GA+ SPYD++GVN+NM AEN+KKRYWKLSLMVHPDK HPQANQAF+ LNKAFKDLQDPDKRKA+DDKI KEEQE F+ ELK MREAA WRRLQG+SMEGD+ LLA++DVKV R+EWMTTLPPERKPGV+ STKF++ +K GRGDTS WTDTP ERAQ+AKMNYLEAYN A ALASN+Q+ + + +A+LVD+YNKAKRSKSLVEKHQET+ K R+KK++KQ+S K EW+ HPWKPWDREKDLTAGRQ+V LD ENMSQGLSSRF+SGSFQRNFL
Sbjct: 89 ESGSVSDTELENPENVVKYILEEFPAVAGDLEQLLLMIDQGQAVDIGGLSERSLVKHLRRLFMCLNLKENGDHMFLLPHKATPTLKVVGPIIRSQMRPQKQLDHLDSPEEAPLVSPASESRHVDKIVDDIKEDSAGPKEDSVGPRR---RTIGPQMPSAELLAAAARLTTAEAELREAEMDG-DNELFIGPPPPAMVKEAESTNEAERFEEITRIIGAEEASPYDILGVNKNMSAENMKKRYWKLSLMVHPDKSSHPQANQAFVKLNKAFKDLQDPDKRKALDDKIKLKEEQELFQAELKVMREAAQWRRLQGISMEGDDILLAELDVKVAPTREEWMTTLPPERKPGVSMHSTKFSKTSK-GRGDTSVWTDTPSERAQKAKMNYLEAYNEAAALASNEQETRKMSSEADLVDQYNKAKRSKSLVEKHQETSAKNRTKKRSKQESVKQEWEENHPWKPWDREKDLTAGRQSVNLDHENMSQGLSSRFASGSFQRNFL 580
BLAST of XM_017392483.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068V9Q4 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 643.269 bits (1658), Expect = 0.000e+0
Identity = 345/520 (66.35%), Postives = 407/520 (78.27%), Query Frame = 0
Match: A0A068V9Q4 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 643.269 bits (1658), Expect = 0.000e+0
Identity = 345/520 (66.35%), Postives = 407/520 (78.27%), Query Frame = 0
Query: 71 KRRKHRRREKKNASESESE--------SGSESERVRDKPEDVIRFILNEFSGVAADLEQLLKMIDDGQAVDISGLSEKSLVKHLRKLFLSLDLKESHELVFLLPPNVCPTLKVVGSIIHPNVEPPVQNIDNPAPEIDVQEVPSDVNTRHMPEDFNMKLPSPRQDVAGPKRSFCRVIGPEMPSAELLAAAAKLTEAEAELRDAEMDGGDGGLFIGPPPPAVVKEAESANEAERFEEVTRIMGADVDSPYDVVGVNRNMPAENIKKRYWKLSLMVHPDKCPHPQANQAFIILNKAFKDLQDPDKRKAMDDKIIQKEEQERFKVELKEMREAAHWRRLQGLSMEGDEALLADMDVKVEKKRDEWMTTLPPERKPGVTTQSTKFNRNTKEGRGDTSAWTDTPLERAQRAKMNYLEAYNTATALASNDQQNQTTNMDAELVDKYNKAKRSKSLVEKHQETAGKRSKKKAKQDSSKDEWQGQHPWKPWDREKDLTAGRQNVKLDAENMSQGLSSRFSSGSFQRNFL 582
K +K+ RR+K ESE +G + + + PEDV++ IL EF V+ DLEQLL MIDDGQAVDI GLSEK+LVKHLR+LFL L+LKE+ + +FLL PTL+V+ +I Q +D+ E ++ V D R+ P D NM S +D GP+R RVIGPEMPSAELLAAAAKLTEAEAE D LFIGPPPPA V E ES+NEAERFEE+TRIMGA+VDSPYD++GVN+NM AEN+KKRYWKLSLMVHPDKC HPQA+QAF+ LNKAFKDL DPDKRKA+D+KI KEEQE FK ELK M+EAAHWRRLQG+SMEGD+ LLADM+ KVE KRDEWMTTLPPERKPG T QSTKF+R++KEGRGDTS WTDTP +RAQ+AKMNYLEAYN A+ LASN+Q+ + +N DA LVD+YNK+KRSKSLV+KHQE A RSKKK+KQ+ K+EW+G+HPW+PWDREKDLTAGRQ+VKLDAENM+QGLSSRFSSGSFQRNFL
Sbjct: 81 KSKKYERRKKDKYYSDESEVAESLPRSNGDDDDSGLENPEDVVKCILKEFPAVSGDLEQLLHMIDDGQAVDIRGLSEKTLVKHLRRLFLCLNLKETGDNIFLLKSEGHPTLEVLRPVIDGYGRSSKQQLDHCTLENELLSVSPD--GRNGP-DANMTKSS--EDAIGPRR---RVIGPEMPSAELLAAAAKLTEAEAE-LREAELVDDSELFIGPPPPAFVSEVESSNEAERFEEITRIMGAEVDSPYDILGVNKNMSAENMKKRYWKLSLMVHPDKCSHPQAHQAFVKLNKAFKDLLDPDKRKALDEKIKLKEEQEEFKAELKAMKEAAHWRRLQGISMEGDDILLADMEAKVEPKRDEWMTTLPPERKPGTTMQSTKFSRSSKEGRGDTSVWTDTPSDRAQKAKMNYLEAYNEASTLASNEQERKRSNSDAHLVDEYNKSKRSKSLVDKHQELAQNRSKKKSKQEPVKEEWEGKHPWRPWDREKDLTAGRQSVKLDAENMAQGLSSRFSSGSFQRNFL 591
BLAST of XM_017392483.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SVW5 ((uncharacterized protein LOC113695294 isoform X1 {ECO:0000313|RefSeq:XP_027070131.1, ECO:0000313|RefSeq:XP_027070132.1}))
HSP 1 Score: 642.884 bits (1657), Expect = 0.000e+0
Identity = 337/484 (69.63%), Postives = 394/484 (81.40%), Query Frame = 0
Match: A0A6P6SVW5 ((uncharacterized protein LOC113695294 isoform X1 {ECO:0000313|RefSeq:XP_027070131.1, ECO:0000313|RefSeq:XP_027070132.1}))
HSP 1 Score: 642.884 bits (1657), Expect = 0.000e+0
Identity = 337/484 (69.63%), Postives = 394/484 (81.40%), Query Frame = 0
Query: 99 DKPEDVIRFILNEFSGVAADLEQLLKMIDDGQAVDISGLSEKSLVKHLRKLFLSLDLKESHELVFLLPPNVCPTLKVVGSIIHPNVEPPVQNIDNPAPEIDVQEVPSDVNTRHMPEDFNMKLPSPRQDVAGPKRSFCRVIGPEMPSAELLAAAAKLTEAEAELRDAEMDGGDGGLFIGPPPPAVVKEAESANEAERFEEVTRIMGADVDSPYDVVGVNRNMPAENIKKRYWKLSLMVHPDKCPHPQANQAFIILNKAFKDLQDPDKRKAMDDKIIQKEEQERFKVELKEMREAAHWRRLQGLSMEGDEALLADMDVKVEKKRDEWMTTLPPERKPGVTTQSTKFNRNTKEGRGDTSAWTDTPLERAQRAKMNYLEAYNTATALASNDQQNQTTNMDAELVDKYNKAKRSKSLVEKHQETAGKRSKKKAKQDSSKDEWQGQHPWKPWDREKDLTAGRQNVKLDAENMSQGLSSRFSSGSFQRNFL 582
+ PEDV++ IL EF V+ DLEQLL MIDDGQAVDI GLSEK+LVKHLR+LFL L+LKE+ + +FLL PTL+V +IH + Q +D+ E ++ V D R+ P D NM S + GP+R RVIGPEMPSAELLAAAAKLTEAEAE D LFIGPPP A V E ES+NEAERFEE+TRIMGA+VDSPYD++GVN+NM AEN+KKRYWKLSLMVHPDKC HPQA+QAF+ LNKAFKDLQDPDKRKA+D+KI KEEQE FK ELK M+EAAHWRRLQG+SMEGD+ LLADM+ KVE KRDEWMTTLPPERKPG+T QSTKF+R++KEGRGDTS WTDTP +RAQ+AKMNYLEAYN A+ALASN+Q+ + +N DA LVD+YNK+KRSKSLV+KHQE A RSKKK+KQ+ K+EW+G+HPW+PWDREKDLTAGRQ+VKLDAENM+QGLSSRFSSGSFQRNFL
Sbjct: 206 ENPEDVVKCILKEFPAVSRDLEQLLHMIDDGQAVDIRGLSEKTLVKHLRRLFLCLNLKETGDNIFLLKSEGHPTLEVCRPVIHGYGQSSKQQLDHCTLENELLSVSPD--GRNGP-DANMTKSS--EGAIGPRR---RVIGPEMPSAELLAAAAKLTEAEAE-LREAELVDDSELFIGPPPAAFVSEVESSNEAERFEEITRIMGAEVDSPYDILGVNKNMSAENMKKRYWKLSLMVHPDKCSHPQAHQAFVKLNKAFKDLQDPDKRKALDEKIKLKEEQEEFKAELKAMKEAAHWRRLQGISMEGDDILLADMEAKVEPKRDEWMTTLPPERKPGMTMQSTKFSRSSKEGRGDTSVWTDTPSDRAQKAKMNYLEAYNEASALASNEQERKRSNSDAHLVDEYNKSKRSKSLVDKHQELAQNRSKKKSKQEPVKEEWEGKHPWRPWDREKDLTAGRQSVKLDAENMAQGLSSRFSSGSFQRNFL 680
BLAST of XM_017392483.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7NSC0 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 641.728 bits (1654), Expect = 0.000e+0
Identity = 354/492 (71.95%), Postives = 405/492 (82.32%), Query Frame = 0
Match: A0A6S7NSC0 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 641.728 bits (1654), Expect = 0.000e+0
Identity = 354/492 (71.95%), Postives = 405/492 (82.32%), Query Frame = 0
Query: 101 PEDVIRFILNEFSGVAADLEQLLKMIDDGQAVDISGLSEKSLVKHLRKLFLSLDLKESHELVFLLPPNVCPTLKVVGSIIHPNVEP--PVQNIDNPAPEIDVQEVPSDVNTRHMPEDFNMKLPSPRQDVAGPKRSFCRVIGPEMPSAELLAAAAKLTEAEAELRDAEMDGGDGGLFIGPPPPAVVKEAESANEAERFEEVTRIMGADVDSPYDVVGVNRNMPAENIKKRYWKLSLMVHPDKCPHPQANQAFIILNKAFKDLQDPDKRKAMDDKIIQKEEQERFKVELKEMREAAHWRRLQGLSMEGDEALLADMDVKVEKKRDEWMTTLPPERKPGVTT-QSTK-FNRNTKEGRGDTSAWTDTPLERAQRAKMNYLEAYNTATALASNDQQNQTT-NMDAELVDKYNKAKRSKSLVEKHQETAGKRSKKKAK-----QDSSKDEWQGQHPWKPWDREKDLTAGRQNVKLDAENMSQGLSSRFSSGSFQRNFL 582
P +V+++IL+EF VA DLEQLL+MIDDGQAVDISGLSEKSLVK+LRKLFLSL L E+ LVFLLP +V PTL+VVG++I P P PV N P DV H P D + LPS ++++A P++ RVIGP MPSAELLAAAAKLTEAEAELR+AE+ G D LFIGPPPPAVV EA SAN+AERFEEVTRIMGA+VD+PYD+VGVNR+M A+N+KKRYWKLSLMVHPDKC HP+A+QAFI LNKAFKDLQDP KRKAMDDKI +KEE+ERFK+ELK MREAA WRRLQG+SMEGD+ALLADMDVKVE+ RDEWMTTLPPERK GV T QSTK F+R +KEGRGDTSAWTDTP +RAQ+AKMNYLEAYN A ALA+ Q++ N DAELVDKYNKAKRSKSLVEKH E+ RSKKK+K ++ +DEW+GQHPWKPWDREKDLT GRQNVKLDAEN +QGL+SRFSSGSFQRNFL
Sbjct: 128 PVEVVKYILDEFPAVADDLEQLLRMIDDGQAVDISGLSEKSLVKYLRKLFLSLKLNENGRLVFLLPSDVPPTLEVVGAVIRPKSGPQRPVSNDHEPN---------DDVYAEHKPADGDSNLPSAQEEIAAPRK---RVIGPAMPSAELLAAAAKLTEAEAELREAEI-GEDDALFIGPPPPAVVNEAASANDAERFEEVTRIMGAEVDNPYDIVGVNRHMVADNLKKRYWKLSLMVHPDKCTHPEAHQAFIKLNKAFKDLQDPVKRKAMDDKIDEKEEKERFKLELKAMREAAQWRRLQGISMEGDDALLADMDVKVERTRDEWMTTLPPERKTGVATQQSTKAFSRTSKEGRGDTSAWTDTPSDRAQKAKMNYLEAYNQAAALAAGVVQDEGKRNADAELVDKYNKAKRSKSLVEKHLESTRVRSKKKSKAEEGGKEKKQDEWEGQHPWKPWDREKDLTGGRQNVKLDAENKAQGLTSRFSSGSFQRNFL 606
BLAST of XM_017392483.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SVP3 ((uncharacterized protein LOC113695294 isoform X2 {ECO:0000313|RefSeq:XP_027070134.1, ECO:0000313|RefSeq:XP_027070135.1}))
HSP 1 Score: 641.728 bits (1654), Expect = 0.000e+0
Identity = 337/482 (69.92%), Postives = 393/482 (81.54%), Query Frame = 0
Match: A0A6P6SVP3 ((uncharacterized protein LOC113695294 isoform X2 {ECO:0000313|RefSeq:XP_027070134.1, ECO:0000313|RefSeq:XP_027070135.1}))
HSP 1 Score: 641.728 bits (1654), Expect = 0.000e+0
Identity = 337/482 (69.92%), Postives = 393/482 (81.54%), Query Frame = 0
Query: 101 PEDVIRFILNEFSGVAADLEQLLKMIDDGQAVDISGLSEKSLVKHLRKLFLSLDLKESHELVFLLPPNVCPTLKVVGSIIHPNVEPPVQNIDNPAPEIDVQEVPSDVNTRHMPEDFNMKLPSPRQDVAGPKRSFCRVIGPEMPSAELLAAAAKLTEAEAELRDAEMDGGDGGLFIGPPPPAVVKEAESANEAERFEEVTRIMGADVDSPYDVVGVNRNMPAENIKKRYWKLSLMVHPDKCPHPQANQAFIILNKAFKDLQDPDKRKAMDDKIIQKEEQERFKVELKEMREAAHWRRLQGLSMEGDEALLADMDVKVEKKRDEWMTTLPPERKPGVTTQSTKFNRNTKEGRGDTSAWTDTPLERAQRAKMNYLEAYNTATALASNDQQNQTTNMDAELVDKYNKAKRSKSLVEKHQETAGKRSKKKAKQDSSKDEWQGQHPWKPWDREKDLTAGRQNVKLDAENMSQGLSSRFSSGSFQRNFL 582
PEDV++ IL EF V+ DLEQLL MIDDGQAVDI GLSEK+LVKHLR+LFL L+LKE+ + +FLL PTL+V +IH + Q +D+ E ++ V D R+ P D NM S + GP+R RVIGPEMPSAELLAAAAKLTEAEAE D LFIGPPP A V E ES+NEAERFEE+TRIMGA+VDSPYD++GVN+NM AEN+KKRYWKLSLMVHPDKC HPQA+QAF+ LNKAFKDLQDPDKRKA+D+KI KEEQE FK ELK M+EAAHWRRLQG+SMEGD+ LLADM+ KVE KRDEWMTTLPPERKPG+T QSTKF+R++KEGRGDTS WTDTP +RAQ+AKMNYLEAYN A+ALASN+Q+ + +N DA LVD+YNK+KRSKSLV+KHQE A RSKKK+KQ+ K+EW+G+HPW+PWDREKDLTAGRQ+VKLDAENM+QGLSSRFSSGSFQRNFL
Sbjct: 119 PEDVVKCILKEFPAVSRDLEQLLHMIDDGQAVDIRGLSEKTLVKHLRRLFLCLNLKETGDNIFLLKSEGHPTLEVCRPVIHGYGQSSKQQLDHCTLENELLSVSPD--GRNGP-DANMTKSS--EGAIGPRR---RVIGPEMPSAELLAAAAKLTEAEAE-LREAELVDDSELFIGPPPAAFVSEVESSNEAERFEEITRIMGAEVDSPYDILGVNKNMSAENMKKRYWKLSLMVHPDKCSHPQAHQAFVKLNKAFKDLQDPDKRKALDEKIKLKEEQEEFKAELKAMKEAAHWRRLQGISMEGDDILLADMEAKVEPKRDEWMTTLPPERKPGMTMQSTKFSRSSKEGRGDTSVWTDTPSDRAQKAKMNYLEAYNEASALASNEQERKRSNSDAHLVDEYNKSKRSKSLVDKHQELAQNRSKKKSKQEPVKEEWEGKHPWRPWDREKDLTAGRQSVKLDAENMAQGLSSRFSSGSFQRNFL 591
| Match Name | Stats | Description |
|---|---|---|
| A0A6I9U818 | E-Value: 0.000e+0, PID: 66.97 | (uncharacterized protein LOC105176044 {ECO:0000313... [more] |
| A0A2R6R2D3 | E-Value: 0.000e+0, PID: 70.25 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A0A5B7BD00 | E-Value: 0.000e+0, PID: 72.80 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A5AXU1 | E-Value: 0.000e+0, PID: 69.43 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A0A103XMQ4 | E-Value: 0.000e+0, PID: 67.39 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A0A2Z7C4R5 | E-Value: 0.000e+0, PID: 67.81 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A0A068V9Q4 | E-Value: 0.000e+0, PID: 66.35 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A0A6P6SVW5 | E-Value: 0.000e+0, PID: 69.63 | (uncharacterized protein LOC113695294 isoform X1 {... [more] |
| A0A6S7NSC0 | E-Value: 0.000e+0, PID: 71.95 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A0A6P6SVP3 | E-Value: 0.000e+0, PID: 69.92 | (uncharacterized protein LOC113695294 isoform X2 {... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |