Resource Type:
Polypeptide
Name:
XM_017391277.1
Identifier:
XM_017391277.1-protein
Sequence:
MESKSKPEKARYPKLKNLDYDTFTSRGTTSDFDDRSFRVLGIDGEFDAIF
QSLGLSGPDDFAIPAADWESMKLRSSWGKSFRDGELSDKFSENVRVTVSN
VRGISGARPPVLTPPPWDIMRLFAPHGDENVNVRDYGDVDKESARISNEN
KLIGNVGDYDDMDNESYFSDEYDSSSITTYSSTTTVSRTTISSWQKGRLL
GRGSLGSVYEGITDGGFFFAVKEISLLHQGRQSISQLEQEIHLLSKCEHE
NIVRYLGTEQTESNLYIFLELASKGSLLSLYQQYHFRDPLVSVYTRQILN
GLKYLHDGNVVHRDIKCANILVDTNGTVKLADFGLAKSSKLNDVQSCKGT
AFWMAPEVVNRSRSYGLAADIWSLGCTVLEILTGQHPYYPLDAMQAVYRI
GNCIPPRVPEYISIEARDFILKCLQVNPSSRPTAAQLLNHPFVKKSFHYG
EVVSAQGKSRPVISSWEKGKLLVLGLFGSVYEGSAEMEVLLDFHKSEGSL
LDITDLFSLLENGVQYEFLKSKSVAVRSLKVISISNSQIPEIPDNLSFPD
LEELYLHSNLHLSYIPPSFFKHMPALKVLDMSDTSIKNLAPPVFELFALE
QLILRRCELLMELPPEISALTNLKVLDLEGTDLVCLPDELKELTNLKCLK
ISLYDAESYRKSKKIVSIIPAAVLSKLSRLKELSIVVDPQDVWCNAAMKA
IIEDLPSLRKLKTLKLYLPTTELLNDLVELKWNNDDLPIYQNLSNFNFII
GPCSQHFISRLPSDLEEEFLKLKKCLKYINGEDITTQFAEALKHANALYL
DRHWTMQNLSILKESNELKFCLLVDCNEMQVVFDGSDFNHRVANKGENLL
SLQYLAIHYLKNLEVIWNGPGTGCCLRTLRVLVLHMCPNLTTVFTPVLLG
DLHNLQEIIVEDCCKITNLIAEDSTQLTSKETLPGLKKLSLLYLPELVSI
SSGLSIGSELENLVIYDCPKLKRLPSLGMCNKDFIEIRGESEWWDALKWN
TPEWDGGQPHYLRRAFSELDTDEDYLDEFALQYRNSLRLFVEECAAN
Sequence Length:
1047
Sequence Checksum:
008eda13e5b4fda1d8359708146b807e
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017391277.1, derives from mRNA, XM_017391277.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017391277.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017391277.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YQB9 ((Putative mitogen-activated protein kinase kinase kinase 1 {ECO:0000313|EMBL:MPA33798.1}) (2.7.11.25 {ECO:0000313|EMBL:MPA33798.1}))
HSP 1 Score: 481.871 bits (1239), Expect = 1.314e-156
Identity = 279/520 (53.65%), Postives = 339/520 (65.19%), Query Frame = 0
HSP 2 Score: 42.743 bits (99), Expect = 3.610e-1
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 0
Match: A0A5B6YQB9 ((Putative mitogen-activated protein kinase kinase kinase 1 {ECO:0000313|EMBL:MPA33798.1}) (2.7.11.25 {ECO:0000313|EMBL:MPA33798.1}))
HSP 1 Score: 481.871 bits (1239), Expect = 1.314e-156
Identity = 279/520 (53.65%), Postives = 339/520 (65.19%), Query Frame = 0
Query: 1 MESKSK---PEKARYPKLKNLDY-----------DTFTSRGTTS----DFDDR-SFRVLGIDGEFDAIFQSLGLSGPDDFAIPAADWESMKLRSS-----WGKSFRDG-----ELSDKFSENVRVT-----------------VSNVRGISGARPPVLTPPP-------------WDIMRLFAPHGDENVNVRDYGDVDKESARI--------SNENKLIGNVGDYDDMDNESYFSDEYDSSSITTYS----STTTVSRTTISSWQKGRLLGRGSLGSVYEGITDGGFFFAVKEISLLHQG---RQSISQLEQEIHLLSKCEHENIVRYLGTEQTESNLYIFLELASKGSLLSLYQQYHFRDPLVSVYTRQILNGLKYLHDGNVVHRDIKCANILVDTNGTVKLADFGLAKSSKLNDVQSCKGTAFWMAPEVVN-RSRSYGLAADIWSLGCTVLEILTGQHPYYPLDAMQAVYRIGNCIPPRVPEYISIEARDFILKCLQVNPSSRPTAAQLLNHPFVKK 445
MESK K P+ R +KN++Y D + R T S F D+ SFRV GIDGEFD I Q LGLSGP+DFAIPAA WE+MK RSS + R G ELSD+ ++ VR++ S GI G RPPVL PPP WD+++ FAP D + + +G+ + E LI N+ + + S++ DSSS TT S R I+ WQKG LLGRGS GSVYEGI+D GFFFAVKE+SLL QG RQSI QLEQEI LLS+ EHENIV+Y GT++ ES LYIFLEL +KGSL++LY +Y+ RD VS YTRQIL+GLKYLH+ NVVHRDIKCANILVD +G+VKLADFGLAK++KLNDV+SCKGTAFWMAPEVVN R++ YGLAADIWSLGCTVLE+LT + PY L+ MQA++RIG PP V + +S +ARDFILKCLQVNP++RPTAAQLL+HPFVK+
Sbjct: 17 MESKQKRRGPKLERRNAVKNIEYEPNSSVLPSLSDELSPRRTRSLDLLPFTDKTSFRVEGIDGEFDIICQRLGLSGPEDFAIPAAAWEAMKFRSSSDLLPRSRLHRLGDEGASELSDRLADGVRISDITEEQGESIESNESIECSRSAGIKGVRPPVLAPPPGISLSVIDNAGSTWDLLKSFAPDNDTSSSFVIHGEFSSDDEDEEVDEYIVKEQELSLIANLSESCSF---TTTSNDDDSSSTTTEPMSNISPNGRFRRIITYWQKGELLGRGSFGSVYEGISDDGFFFAVKEVSLLDQGDVGRQSIFQLEQEIALLSQFEHENIVQYYGTDKDESKLYIFLELVTKGSLMNLYLKYNLRDSQVSAYTRQILHGLKYLHERNVVHRDIKCANILVDASGSVKLADFGLAKATKLNDVKSCKGTAFWMAPEVVNRRNQGYGLAADIWSLGCTVLEMLTRRIPYSHLECMQALFRIGRGEPPPVSDSLSRDARDFILKCLQVNPNARPTAAQLLDHPFVKR 533
HSP 2 Score: 42.743 bits (99), Expect = 3.610e-1
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 0
Query: 453 VSAQGKSRPVISSWEKGKLLVLGLFGSVYEGSAEMEVLLDFHKSEGSLLDITDL 506
+S G+ R +I+ W+KG+LL G FGSVYEG ++ F E SLLD D+
Sbjct: 265 ISPNGRFRRIITYWQKGELLGRGSFGSVYEGISDDGFF--FAVKEVSLLDQGDV 316
BLAST of XM_017391277.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N0TKK6 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 472.626 bits (1215), Expect = 2.438e-153
Identity = 272/518 (52.51%), Postives = 333/518 (64.29%), Query Frame = 0
Match: A0A7N0TKK6 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 472.626 bits (1215), Expect = 2.438e-153
Identity = 272/518 (52.51%), Postives = 333/518 (64.29%), Query Frame = 0
Query: 9 KARYPKL------KNLDYDTFTSRGTTSD------------FDD-RSFRVLGIDGEFDAIFQSLGLSGPDDFAIPAADWESMKLRSS------------WGKSFRDGELSDKFS------------------ENVRVTVSNVR--GISGARPPVLTPPP-------------WDIMRLFAPHGDEN-----VNVRDYGDVDKESARISNENKLIGN-VGDYDDMDNESYFSDEYDSSSITTYSSTTTVS----RTTISSWQKGRLLGRGSLGSVYEGITDGGFFFAVKEISLLHQG---RQSISQLEQEIHLLSKCEHENIVRYLGTEQTESNLYIFLELASKGSLLSLYQQYHFRDPLVSVYTRQILNGLKYLHDGNVVHRDIKCANILVDTNGTVKLADFGLAKSSKLNDVQSCKGTAFWMAPEVVNR-SRSYGLAADIWSLGCTVLEILTGQHPYYPLDAMQAVYRIGNCIPPRVPEYISIEARDFILKCLQVNPSSRPTAAQLLNHPFVKKSFH 448
K R PKL K+ DYD +S + S+ FDD RSFRV G DGEFD I +SLGLSGP+DFAIP + WE+MK+RSS S + E + + E V+V +R GARP L PPP WD+ R FAP GD++ VR+ DV +R + + L+ V + S + + +S T ++ TT R IS W KG+LLGRGS GSVYE I+ GFF A+KE+SL+ QG +QSI QLEQEI LLS+ EHENIVRY GT++ ESNLYIFLEL SKGSL SL+Q+Y +D VSVYTRQIL GLKYLHD ++VHRDIKCANILVD NG+VKLADFGLAK++KLNDV+SCKGTAFWMAPEVVNR ++ YGLAADIWSLGCTVLE+LT + PYYPL+ MQA++RIG +PP VPE +S++ARDFI+KC+QVNP SRP+AAQLL+HPFVKK H
Sbjct: 10 KQRKPKLERRYARKDYDYDASSSSSSFSEGYGAPMVTRSLEFDDKRSFRVEGGDGEFDRICRSLGLSGPEDFAIPESAWEAMKVRSSSDVFTRSRIDRSGSPSLEEMETAAEVDPVAKVNYVGRSSPGVITVEEVKVKPWRIRNEAAGGARPAELAPPPGRLPRKVDDGSSTWDLFRGFAPEGDDDDESSAQRVREVCDV--ACSRSDDRDGLVEEAVAQIESCSVASSYDGDTSGTSTGTGATPTTSPNVRFRQIISGWIKGQLLGRGSYGSVYEAISVDGFFCAIKEVSLVDQGSQAKQSILQLEQEIDLLSQFEHENIVRYHGTDKDESNLYIFLELVSKGSLASLHQKYELQDSQVSVYTRQILKGLKYLHDRDLVHRDIKCANILVDANGSVKLADFGLAKAAKLNDVKSCKGTAFWMAPEVVNRKNQGYGLAADIWSLGCTVLEMLTQKTPYYPLECMQALFRIGRGMPPDVPEKLSVDARDFIMKCIQVNPDSRPSAAQLLDHPFVKKKLH 525
BLAST of XM_017391277.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A151RDG6 ((Mitogen-activated protein kinase kinase kinase 1 {ECO:0000313|EMBL:KYP40509.1}))
HSP 1 Score: 464.537 bits (1194), Expect = 5.751e-150
Identity = 263/490 (53.67%), Postives = 317/490 (64.69%), Query Frame = 0
Match: A0A151RDG6 ((Mitogen-activated protein kinase kinase kinase 1 {ECO:0000313|EMBL:KYP40509.1}))
HSP 1 Score: 464.537 bits (1194), Expect = 5.751e-150
Identity = 263/490 (53.67%), Postives = 317/490 (64.69%), Query Frame = 0
Query: 32 FDDRSFRVLGIDGEFDAIFQSLGLSGPDDFAIPAADWESMKLRSS------------------------WGKSFRDGELSDKFSEN-VRVTVSNV-------RGISGARPPVLTPPP-------------WDIMRLFAP--------HGDENVNVRDYGDVDKESARISNENKLIGNVGDYDD----------MDNESYFS--DEYDSSSITTYSSTTTVSRTT-------ISSWQKGRLLGRGSLGSVYEGITDGGFFFAVKEISLL---HQGRQSISQLEQEIHLLSKCEHENIVRYLGTEQTESNLYIFLELASKGSLLSLYQQYHFRDPLVSVYTRQILNGLKYLHDGNVVHRDIKCANILVDTNGTVKLADFGLAKSSKLNDVQSCKGTAFWMAPEVV-NRSRSYGLAADIWSLGCTVLEILTGQHPYYPLDAMQAVYRIGNCIPPRVPEYISIEARDFILKCLQVNPSSRPTAAQLLNHPFVKK 445
+D SFR+ G++GEFD I +SLGLSGP+DFAIPAA WE+MK RSS S +GE S + +N VRV V V GI G RPP+L PPP WD++R AP H DE V + GD KE + + G+ D+ + S FS +E DSSS TT +T +S T SWQKG LG GS GSVYEGI+D GFFFA+KE+SLL +QG+QSI QLEQEI LLS+ EHENIV+Y GTE ES LYIFLEL +KGSL SLYQ+Y RD VS YTRQIL+GLKYLHD NVVHRDIKCANILVD +G+VKLADFGLAK++KLNDV+S KGTA+WMAPEVV +++ YGL AD+WSLGCTVLE+LTGQ PY L+ MQA++RIG P VP+ +S +ARDFIL+CLQVNP++RPTAAQLLNH FV++
Sbjct: 44 YDRTSFRIEGVEGEFDRICRSLGLSGPEDFAIPAAAWEAMKFRSSSDILPRLKLDNLEIQEDEEEKEERKIDSAEEGESSGECGDNKVRVRVREVDDSSECCSGIKGVRPPMLKPPPGVKVTAVDSACSTWDLLRELAPQGEGYPVNHSDEEREV-ERGDAVKEEGEVGGVSPKREEEGNVDNGARIAEIVAGLSESSLFSTSNEDDSSSSTTDPKSTNISPNTRIKRIITAGSWQKGEFLGGGSFGSVYEGISDDGFFFAIKEVSLLAQGNQGKQSIYQLEQEIALLSQFEHENIVQYYGTEMDESKLYIFLELVTKGSLRSLYQKYTLRDSQVSAYTRQILHGLKYLHDRNVVHRDIKCANILVDASGSVKLADFGLAKATKLNDVKSMKGTAYWMAPEVVKGKNQGYGLPADMWSLGCTVLEMLTGQLPYSNLEFMQALFRIGKGERPPVPDSLSSDARDFILQCLQVNPNNRPTAAQLLNHSFVQR 532
BLAST of XM_017391277.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0S3RDK8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 462.225 bits (1188), Expect = 1.173e-148
Identity = 264/545 (48.44%), Postives = 334/545 (61.28%), Query Frame = 0
Match: A0A0S3RDK8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 462.225 bits (1188), Expect = 1.173e-148
Identity = 264/545 (48.44%), Postives = 334/545 (61.28%), Query Frame = 0
Query: 1 MESKSKPEKARYPKLKNLDYDTFTSRGTTSD----------FDDRSFRVLGIDGEFDAIFQSLGLSGPDDFAIPAADWESMKLRSSWG---------------------------------KSFRDGELSDKFSENVRVTVSN--VRGISGARPPVLTPPP--------------WDIMRLFAPHGDE-----NVNVRDY------GDVDKESARISNENKLIGNVG----DYDDMDNESYF---------------SDEYDSSSITTYSSTTTVSRT-------TISSWQKGRLLGRGSLGSVYEGITDGGFFFAVKEISLLHQG---RQSISQLEQEIHLLSKCEHENIVRYLGTEQTESNLYIFLELASKGSLLSLYQQYHFRDPLVSVYTRQILNGLKYLHDGNVVHRDIKCANILVDTNGTVKLADFGLAKSSKLNDVQSCKGTAFWMAPEVV-NRSRSYGLAADIWSLGCTVLEILTGQHPYYPLDAMQAVYRIGNCIPPRVPEYISIEARDFILKCLQVNPSSRPTAAQLLNHPFVKK 445
M+ K+ K + + L Y + S +TSD +D SFR+ G++GEFD I +SLGLSGP+DF+IPAA WE+MK RSS K DGE S+K + VRV ++ GI G RPP+L PPP WD++R AP G+E + + RD G V++E ++ E +G + +++DN + S+E DSSS TT + +S T SWQKG LG GS G+VYEGI+D GFFFAVKE+SLL QG +QS+ QLEQEI LLS+ EHENIV+Y GTE ES LYIFLE +KGSL SLYQ+Y RD VS YTRQIL+G+KYLHD NVVHRDIKCANILVD +G+VKLADFGLAK++K+NDV+S KGTAFWMAPEVV +++ YGL ADIWS+GCTVLE+LTGQ PY L+ MQA++RIG I P +P+ +S +A DFIL+CLQVNP+ RPTAAQLLNH FV++
Sbjct: 17 MDQKNPRRKPKLERRNALKYSEYDSGSSTSDEALYTRSMEFYDRTSFRIEGVEGEFDRICRSLGLSGPEDFSIPAAAWEAMKFRSSSDILPRLKLENLDIPEEEEEDEEEEVPNINEERILKPPEDGEFSEKLGDGVRVLEADESTTGIKGVRPPMLKPPPGVRVQLVDDSSCSTWDLLRDLAPIGEELSLKHSEHTRDVENDAPLGVVEREVSK--KEEGQVGRASPKREEEENVDNAARIAEIVAGLSESCSFSTSNEDDSSSSTTDHTPNNISPQGRIKRIITAGSWQKGEFLGGGSFGTVYEGISDDGFFFAVKEVSLLDQGTQGKQSVYQLEQEIALLSQFEHENIVQYYGTEMDESKLYIFLEFVTKGSLRSLYQKYTLRDSQVSAYTRQILHGMKYLHDRNVVHRDIKCANILVDASGSVKLADFGLAKATKMNDVKSMKGTAFWMAPEVVKGKNKGYGLPADIWSVGCTVLEMLTGQLPYCDLEWMQALFRIGKGIRPSIPDSLSRDATDFILQCLQVNPNERPTAAQLLNHSFVQR 559
BLAST of XM_017391277.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N0UN47 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 459.529 bits (1181), Expect = 3.106e-148
Identity = 269/525 (51.24%), Postives = 336/525 (64.00%), Query Frame = 0
Match: A0A7N0UN47 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 459.529 bits (1181), Expect = 3.106e-148
Identity = 269/525 (51.24%), Postives = 336/525 (64.00%), Query Frame = 0
Query: 2 ESKSKPEKARYPKLKNLDYDTF-----------TSRGTTS-DFDD-RSFRVLGIDGEFDAIFQSLGLSGPDDFAIPAADWESMKLRSS---WGKSFRD------------------------GELSDKF-SENVRVTVSNV------RGISGARPPVLTPPP-------------WDIMRLFAPHGDENVNVRDYGDVDKESARISNE--NKLIGNVGDYDDMDNE------------SYFSDEYDSSSIT--TYSSTTTVS-RTTISSWQKGRLLGRGSLGSVYEGITDGGFFFAVKEISLLHQG---RQSISQLEQEIHLLSKCEHENIVRYLGTEQTESNLYIFLELASKGSLLSLYQQYHFRDPLVSVYTRQILNGLKYLHDGNVVHRDIKCANILVDTNGTVKLADFGLAKSSKLNDVQSCKGTAFWMAPEVVNR-SRSYGLAADIWSLGCTVLEILTGQHPYYPLDAMQAVYRIGNCIPPRVPEYISIEARDFILKCLQVNPSSRPTAAQLLNHPFVKK 445
+ K KP+ R K+ DYD R T S + D+ RSFRV G +GEFD I SLGLSGP+DFAIP + WE+MK+RSS + +S D G L +F E V+V + G+ GARP L PP WD++R FAP G+++ + +A++ E N + D D++ E SY D +S+ T T S++ V R I+ W KG+LLGRGS GSVYE ++ GFFFA+KE+SL+ QG RQS+ QLEQEI LLS+ EHENIVRY GT++ ESNLYIFLEL SKGSL SL+Q+Y +D VSVYTRQIL GLKYLHD ++VHRDIKCANILVD +G+VKLADFGLAK++KLNDV+SCKGTAFWMAPEVVNR ++ YG AADIWSLGCTVLE+LT + PYYPL+ MQA++RIG +PP VPE +S++ARDFILKC+QVNP +RPTAAQLL+HPFVKK
Sbjct: 7 QRKPKPKLERRYARKDYDYDASSSSSSFSEGYGAPRVTRSLEIDEKRSFRVGGGEGEFDRICMSLGLSGPEDFAIPESAWEAMKVRSSSDVFPRSRIDRTKSPCLEEMETVVHAQVVQVEKVGHLLARFRDEEVKVEPCRIPNEVRGGGLVGARPAELALPPGRLSRKVDDGSSTWDLLRGFAPEGEDS----------ESAAQLVREGHNGACSSSADADELVEEAAARMELCSVASSYDGDRSGTSTATGATPSASPNVRFRQIIAGWIKGQLLGRGSYGSVYEAMSVDGFFFAIKEVSLVDQGSQARQSVWQLEQEIDLLSQFEHENIVRYHGTDKDESNLYIFLELVSKGSLASLHQRYELKDSQVSVYTRQILQGLKYLHDRDLVHRDIKCANILVDADGSVKLADFGLAKAAKLNDVKSCKGTAFWMAPEVVNRKNQGYGRAADIWSLGCTVLEMLTQKTPYYPLECMQALFRIGRGMPPDVPEKLSVDARDFILKCIQVNPDNRPTAAQLLDHPFVKK 521
BLAST of XM_017391277.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A6KU09 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 459.144 bits (1180), Expect = 9.308e-148
Identity = 260/496 (52.42%), Postives = 319/496 (64.31%), Query Frame = 0
HSP 2 Score: 39.2762 bits (90), Expect = 4.560e+0
Identity = 23/50 (46.00%), Postives = 30/50 (60.00%), Query Frame = 0
Match: A0A6A6KU09 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 459.144 bits (1180), Expect = 9.308e-148
Identity = 260/496 (52.42%), Postives = 319/496 (64.31%), Query Frame = 0
Query: 31 DFDDR-SFRVLGIDGEFDAIFQSLGLSGPDDFAIPAADWESMKLRSSW----------GKSFRDG---------------ELSDKFSENVRVT----------VSNVR---------GISGARPPVLTPPP-------------WDIMRLFAPHGDENVNVRDYGDVDKESARISNENKLIGNVGDYDDMDNE--------------SYFSDEYDSSSITTYSSTTTVS-----RTTISSWQKGRLLGRGSLGSVYEGITDGGFFFAVKEISLL---HQGRQSISQLEQEIHLLSKCEHENIVRYLGTEQTESNLYIFLELASKGSLLSLYQQYHFRDPLVSVYTRQILNGLKYLHDGNVVHRDIKCANILVDTNGTVKLADFGLAKSSKLNDVQSCKGTAFWMAPEVVN-RSRSYGLAADIWSLGCTVLEILTGQHPYYPLDAMQAVYRIGNCIPPRVPEYISIEARDFILKCLQVNPSSRPTAAQLLNHPFVKK 445
D DR SFR+ G DGEFD I +SLGLSGP+DFAIPAA WE+MK+RS+ S R G EL + ++VR++ V + + GI G RPP+L PPP WDI+R FAP D V G + + + + V + D+ S+ + D SS TT + +S R I+ W+KG LLGRGS GSVYEGI+D GFFFAVKE+SLL QG+QSI QLEQEI LLS+ EHENIV+Y GT++ ES LYIFLEL +KGSLL+LYQ+Y+ RD VS YTRQIL+GLKYLHD NVVHRDIKCANILVD NG+VKLADFGLAK++KLNDV+SCKGTAFWMAPEVVN R++ YGL ADIWSLGCTVLE+LT Q PY L+ MQA++RIG PPRVP+ +S +A+DFIL+CL+VNP+ RPTAAQLL+H FV++
Sbjct: 45 DLPDRTSFRIEGTDGEFDRICRSLGLSGPEDFAIPAAAWEAMKVRSASDLLPRSRLHEADSPRIGDEKQHHHQMQKQEESELCTRVFDSVRISDAAELTRDEPVESAKLNACCGPSGGIKGVRPPLLKPPPSMTLPVIDNACSTWDILRDFAPENDRGSLVLANGHFNSDDVEEGLGEQGLNAVAIKREEDDNLLRPGVIAVLSGSYSFTTSNDDDSSSTTTEPMSNISPNERFRRIINYWEKGELLGRGSFGSVYEGISDDGFFFAVKEVSLLDQGSQGKQSIYQLEQEIALLSQFEHENIVQYYGTDKDESKLYIFLELVTKGSLLNLYQRYNLRDSQVSAYTRQILHGLKYLHDRNVVHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSCKGTAFWMAPEVVNRRNQGYGLPADIWSLGCTVLEMLTRQIPYSHLECMQALFRIGRGEPPRVPDSLSQDAQDFILQCLRVNPNDRPTAAQLLDHSFVRR 540
HSP 2 Score: 39.2762 bits (90), Expect = 4.560e+0
Identity = 23/50 (46.00%), Postives = 30/50 (60.00%), Query Frame = 0
Query: 453 VSAQGKSRPVISSWEKGKLLVLGLFGSVYEGSAEMEVLLDFHKSEGSLLD 502
+S + R +I+ WEKG+LL G FGSVYEG ++ F E SLLD
Sbjct: 272 ISPNERFRRIINYWEKGELLGRGSFGSVYEGISDDGFF--FAVKEVSLLD 319
BLAST of XM_017391277.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3U6N3 ((mitogen-activated protein kinase kinase kinase 1-like {ECO:0000313|RefSeq:XP_014501693.1, ECO:0000313|RefSeq:XP_014501694.1}))
HSP 1 Score: 459.529 bits (1181), Expect = 9.559e-148
Identity = 267/542 (49.26%), Postives = 337/542 (62.18%), Query Frame = 0
Match: A0A1S3U6N3 ((mitogen-activated protein kinase kinase kinase 1-like {ECO:0000313|RefSeq:XP_014501693.1, ECO:0000313|RefSeq:XP_014501694.1}))
HSP 1 Score: 459.529 bits (1181), Expect = 9.559e-148
Identity = 267/542 (49.26%), Postives = 337/542 (62.18%), Query Frame = 0
Query: 4 KSKPEKARYPKLKNLDYDTFTSRGTTS------DFDDR-SFRVLGIDGEFDAIFQSLGLSGPDDFAIPAADWESMKLRSSWG---------------------------------KSFRDGELSDKFSENVRVTVSN--VRGISGARPPVLTPPP--------------WDIMRLFAPHGD-----ENVNVRDY------GDVDKESARISNENKLIGNVG-------DYDDMDNESYF---------------SDEYDSSSITTYSSTTTVSRT-------TISSWQKGRLLGRGSLGSVYEGITDGGFFFAVKEISLLHQG---RQSISQLEQEIHLLSKCEHENIVRYLGTEQTESNLYIFLELASKGSLLSLYQQYHFRDPLVSVYTRQILNGLKYLHDGNVVHRDIKCANILVDTNGTVKLADFGLAKSSKLNDVQSCKGTAFWMAPEVV-NRSRSYGLAADIWSLGCTVLEILTGQHPYYPLDAMQAVYRIGNCIPPRVPEYISIEARDFILKCLQVNPSSRPTAAQLLNHPFVKK 445
+ KP+ R LK +YD+ +S + +F DR SFR+ G++GEFD I +SLGLSGP+DF+IPAA WE+MK RSS K DGE S+K ++ VRV ++ GI G RPP+L PPP WD++R AP G+ + + RD G V++E ++ K G VG + +++DN + S+E DSSS TT + +S T SWQKG LG GS G+VYEGI+D GFFFAVKE+SLL QG +QS+ QLEQEI LLS+ EHENIV+Y GTE ES LYIFLEL +KGSL SLYQ+Y RD VS YTRQIL+G+KYLHD NVVHRDIKCANILVD +G+VKLADFGLAK++K+NDV+S KGTAFWMAPEVV +++ YGL ADIWS+GCTVLE+LTGQ PY L+ MQA++RIG I P +P+ +S +A DFIL+CLQVNP+ RPTAAQLLNH FV++
Sbjct: 23 RRKPKLERRNALKYSEYDSGSSTSGEALYTRSMEFYDRTSFRIEGVEGEFDRICRSLGLSGPEDFSIPAAAWEAMKFRSSSDILPRLKLENLDIPEEEEEDEEEEVRNINEEGILKPPEDGEFSEKLADGVRVLEADESTTGIKGVRPPMLKPPPGVRVQLVDDSSCSTWDLLRDLAPIGEGLSLKHSEHTRDVENDAPLGVVEREVSK-----KEEGEVGRASPKREEEENVDNAARIAEIVAGLSESCSFSTSNEDDSSSSTTDHTPNNISPQGRIKRIITAGSWQKGEFLGGGSFGTVYEGISDDGFFFAVKEVSLLDQGTQGKQSVYQLEQEIALLSQFEHENIVQYYGTEMDESKLYIFLELVTKGSLRSLYQKYTLRDSQVSAYTRQILHGMKYLHDRNVVHRDIKCANILVDASGSVKLADFGLAKATKMNDVKSMKGTAFWMAPEVVKGKNKGYGLPADIWSVGCTVLEMLTGQLPYCDLEWMQALFRIGKGIRPSIPDSLSRDATDFILQCLQVNPNDRPTAAQLLNHSFVQR 559
BLAST of XM_017391277.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0L9UFW9 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 459.144 bits (1180), Expect = 1.330e-147
Identity = 263/545 (48.26%), Postives = 333/545 (61.10%), Query Frame = 0
Match: A0A0L9UFW9 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 459.144 bits (1180), Expect = 1.330e-147
Identity = 263/545 (48.26%), Postives = 333/545 (61.10%), Query Frame = 0
Query: 1 MESKSKPEKARYPKLKNLDYDTFTSRGTTSD----------FDDRSFRVLGIDGEFDAIFQSLGLSGPDDFAIPAADWESMKLRSSWG---------------------------------KSFRDGELSDKFSENVRVTVSN--VRGISGARPPVLTPPP--------------WDIMRLFAPHGDE-----NVNVRDY------GDVDKESARISNENKLIGNVG----DYDDMDNESYF---------------SDEYDSSSITTYSSTTTVSRT-------TISSWQKGRLLGRGSLGSVYEGITDGGFFFAVKEISLLHQG---RQSISQLEQEIHLLSKCEHENIVRYLGTEQTESNLYIFLELASKGSLLSLYQQYHFRDPLVSVYTRQILNGLKYLHDGNVVHRDIKCANILVDTNGTVKLADFGLAKSSKLNDVQSCKGTAFWMAPEVV-NRSRSYGLAADIWSLGCTVLEILTGQHPYYPLDAMQAVYRIGNCIPPRVPEYISIEARDFILKCLQVNPSSRPTAAQLLNHPFVKK 445
M+ K+ K + + L Y + S +TSD +D SFR+ G++GEFD I +SLGLSGP+DF+IPAA WE+MK R S K DGE S+K + VRV ++ GI G RPP+L PPP WD++R AP G+E + + RD G V++E ++ E +G + +++DN + S+E DSSS TT + +S T SWQKG LG GS G+VYEGI+D GFFFAVKE+SLL QG +QS+ QLEQEI LLS+ EHENIV+Y GTE ES LYIFLE +KGSL SLYQ+Y RD VS YTRQIL+G+KYLHD NVVHRDIKCANILVD +G+VKLADFGLAK++K+NDV+S KGTAFWMAPEVV +++ YGL ADIWS+GCTVLE+LTGQ PY L+ MQA++RIG I P +P+ +S +A DFIL+CLQVNP+ RPTAAQLLNH FV++
Sbjct: 17 MDQKNPRRKPKLERRNALKYSEYDSGSSTSDEALYTRSMEFYDRTSFRIEGVEGEFDRICRSLGLSGPEDFSIPAAAWEAMKFRPSPDILPRLKLENLDIPEEEEEDEEEEVPNINEERILKPPEDGEFSEKLGDGVRVLEADESTTGIKGVRPPMLKPPPGVRVQLVDDSSCSTWDLLRDLAPIGEELSLKHSEHTRDVENDAPLGVVEREVSK--KEEGQVGRASPKREEEENVDNAARIAEIVAGLSESCSFSTSNEDDSSSSTTDHTPNNISPQGRIKRIITAGSWQKGEFLGGGSFGTVYEGISDDGFFFAVKEVSLLDQGTQGKQSVYQLEQEIALLSQFEHENIVQYYGTEMDESKLYIFLEFVTKGSLRSLYQKYTLRDSQVSAYTRQILHGMKYLHDRNVVHRDIKCANILVDASGSVKLADFGLAKATKMNDVKSMKGTAFWMAPEVVKGKNKGYGLPADIWSVGCTVLEMLTGQLPYCDLEWMQALFRIGKGIRPSIPDSLSRDATDFILQCLQVNPNERPTAAQLLNHSFVQR 559
BLAST of XM_017391277.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834XCI7 ((Mitogen-activated protein kinase kinase kinase 1-like {ECO:0000313|EMBL:KAF7842680.1}))
HSP 1 Score: 457.988 bits (1177), Expect = 2.982e-147
Identity = 263/497 (52.92%), Postives = 321/497 (64.59%), Query Frame = 0
HSP 2 Score: 38.5058 bits (88), Expect = 9.014e+0
Identity = 22/50 (44.00%), Postives = 28/50 (56.00%), Query Frame = 0
Match: A0A834XCI7 ((Mitogen-activated protein kinase kinase kinase 1-like {ECO:0000313|EMBL:KAF7842680.1}))
HSP 1 Score: 457.988 bits (1177), Expect = 2.982e-147
Identity = 263/497 (52.92%), Postives = 321/497 (64.59%), Query Frame = 0
Query: 4 KSKPEKARYPKLKNLDYDTFTS----------------RGTTSDFD-----DR--SFRVLGIDGEFDAIFQSLGLSGPDDFAIPAADWESMKLRSSWGK--SFRDGELSDKFSENVRVTVSNVRGISGARPPVLTPPP-------------WDIMRLFAPHGDENV--NVRDYGDVDKESARISNENK--LIGNVGDYDDMDNESYFSDE-------YDSSSITTYSSTTTVSRTTISSWQKGRLLGRGSLGSVYEGITDGGFFFAVKEISLL---HQGRQSISQLEQEIHLLSKCEHENIVRYLGTEQTESNLYIFLELASKGSLLSLYQQYHFRDPLVSVYTRQILNGLKYLHDGNVVHRDIKCANILVDTNGTVKLADFGLAKSSKLNDVQSCKGTAFWMAPEVVN-RSRSYGLAADIWSLGCTVLEILTGQHPYYPLDAMQAVYRIGNCIPPRVPEYISIEARDFILKCLQVNPSSRPTAAQLLNHPFVKKSF 447
+ KP+ R +KN+DY +S R S FD DR SFRV+G+DGEFD IFQ+LGLSGPDDFAIP A WE+ K RS K R SD SE + GI G RP VL+PPP WD++R + D + + R G+ + + R+ NE + L+ + +E SD D S+ S + R SWQKG +LG+GS G+VYEG TD GFFFAVKE+SLL QG+QSI QL+QEI LLS+ EHENIVRYLGT++ +S LYIFLEL +KGSL LYQ+Y RD VS YTRQIL+GLKYLHD NVVHRDIKCANILVD NG+VKLADFGLAK++ +NDV+S KG+ FWMAPEVVN R+R YGLAADIWSLGCTVLE+L Q PY L+ MQA++RIG PP VPE +S +ARDFIL+CLQVNP+ RPTA +LL+HPFVK++F
Sbjct: 40 RVKPKLDRRNAMKNIDYRPPSSITASPFDDVGDASPDSRSPASSFDLSPSLDRQTSFRVMGVDGEFDLIFQALGLSGPDDFAIPTAAWEAQKARSRIKKVEENRVSIESDVASE----SKPQGGGIKGVRPTVLSPPPVTLPPIVDNEMSTWDLLRSLSGGVDSSGEEDQRGIGE-NLDGVRVRNEGRMNLVSDSSCSSTTSHEDDESDVGGCKVLVVDDDSVYNVSPNGSF-RRIFKSWQKGEILGKGSFGTVYEGFTDDGFFFAVKEVSLLDQGSQGKQSIFQLQQEISLLSQFEHENIVRYLGTDKDKSTLYIFLELVTKGSLARLYQKYRLRDSQVSSYTRQILSGLKYLHDRNVVHRDIKCANILVDANGSVKLADFGLAKATNMNDVKSSKGSPFWMAPEVVNLRNRCYGLAADIWSLGCTVLEMLMRQPPYSHLEGMQALFRIGRGEPPPVPESLSKDARDFILRCLQVNPNERPTAVKLLDHPFVKRTF 530
HSP 2 Score: 38.5058 bits (88), Expect = 9.014e+0
Identity = 22/50 (44.00%), Postives = 28/50 (56.00%), Query Frame = 0
Query: 453 VSAQGKSRPVISSWEKGKLLVLGLFGSVYEGSAEMEVLLDFHKSEGSLLD 502
VS G R + SW+KG++L G FG+VYEG + F E SLLD
Sbjct: 260 VSPNGSFRRIFKSWQKGEILGKGSFGTVYEGFTDDGFF--FAVKEVSLLD 307
BLAST of XM_017391277.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A2Z1D7 ((Mitogen-activated protein kinase kinase kinase 1 {ECO:0000313|EMBL:KAE8685714.1}))
HSP 1 Score: 457.988 bits (1177), Expect = 3.694e-147
Identity = 263/549 (47.91%), Postives = 331/549 (60.29%), Query Frame = 0
HSP 2 Score: 39.2762 bits (90), Expect = 5.423e+0
Identity = 30/78 (38.46%), Postives = 41/78 (52.56%), Query Frame = 0
Match: A0A6A2Z1D7 ((Mitogen-activated protein kinase kinase kinase 1 {ECO:0000313|EMBL:KAE8685714.1}))
HSP 1 Score: 457.988 bits (1177), Expect = 3.694e-147
Identity = 263/549 (47.91%), Postives = 331/549 (60.29%), Query Frame = 0
Query: 4 KSKPEKARYPKLKNLDYDTFTSRGTTSD------------FDDRSFRVLGIDGEFDAIFQSLGLSGPDDFAIPAADWESMKLRSSWG-----------------KSFRDG------ELSDKFS-------------------------ENVRVT--------VSNVRG------ISGARPPVLTPPP-------------WDIMRLFAPHGDENVNVRD---YGDVDKESARISNENKLIGNVGDYDDMDNESYF--SDEYDSSSITTYS----STTTVSRTTISSWQKGRLLGRGSLGSVYEGITDGGFFFAVKEISLL---HQGRQSISQLEQEIHLLSKCEHENIVRYLGTEQTESNLYIFLELASKGSLLSLYQQYHFRDPLVSVYTRQILNGLKYLHDGNVVHRDIKCANILVDTNGTVKLADFGLAKSSKLNDVQSCKGTAFWMAPEVVN-RSRSYGLAADIWSLGCTVLEILTGQHPYYPLDAMQAVYRIGNCIPPRVPEYISIEARDFILKCLQVNPSSRPTAAQLLNHPFVKKSFHYGEV 452
+ KP R K++DYD + + D +D SFR+ G DGEF+ I +SLGL+GPDDF+IP A WE+ K+RSS +DG ELSD+FS ++ T VS V G I G RPP L PPP WD+ + F P D V D D ++ + E + + +G+ + F S++ DSSS TT S + TI+ WQKG LLGRGS GSVYEGI+D GFFFAVKE+SLL QG+QS+ QLEQEI LLS+ EHENIV+Y GT++ +SNLYIFLEL +KGSLL+LYQ+YH +D VS YTRQIL+GLKYLHD NVVHRD+KCANILVD NG+VKLADFGLAK++KLNDV+SCKGTAFWMAPEVVN + + YG+ ADIWSLGCTVLE+LT PY+PL+ MQA++RIG PP +P+ +S +ARDFI++C+Q +P SR TAA+LL HPFVK+ H G
Sbjct: 21 RRKPRLERTNAAKDIDYDASSFYSSIEDSSSPLITRSLDLYDKTSFRIEGTDGEFELICRSLGLNGPDDFSIPTAAWEARKIRSSSDLLPRSRLNRLHSPKEDTAQVKDGAEVTVAELSDRFSATELTWNDSSELKLRESCVSYKIGVDDTTTTEMKSNTSCVSCVVGGGGNNRIKGGRPPFLKPPPGMKLKVFDNGCSSWDLFKDFGPDDDRGYVVLDNLLSSDDEEYGRKEGGEEENLMRIGETAVLSESCSFTTSNDDDSSSTTTEPMSNISPNGRFKRTITYWQKGDLLGRGSFGSVYEGISDDGFFFAVKEVSLLDQGSQGKQSLIQLEQEIALLSQFEHENIVQYYGTDKDQSNLYIFLELVTKGSLLNLYQRYHLKDSQVSAYTRQILHGLKYLHDRNVVHRDVKCANILVDANGSVKLADFGLAKATKLNDVKSCKGTAFWMAPEVVNGKGQGYGIPADIWSLGCTVLEMLTRHIPYHPLEWMQALFRIGRGEPPLIPDSLSKDARDFIMQCMQADPDSRSTAAKLLQHPFVKRPLHSGSA 569
HSP 2 Score: 39.2762 bits (90), Expect = 5.423e+0
Identity = 30/78 (38.46%), Postives = 41/78 (52.56%), Query Frame = 0
Query: 453 VSAQGKSRPVISSWEKGKLLVLGLFGSVYEGSAE-------MEVLLDFHKSEG--SLLDITDLFSLL-----ENGVQY 516
+S G+ + I+ W+KG LL G FGSVYEG ++ EV L S+G SL+ + +LL EN VQY
Sbjct: 294 ISPNGRFKRTITYWQKGDLLGRGSFGSVYEGISDDGFFFAVKEVSLLDQGSQGKQSLIQLEQEIALLSQFEHENIVQY 371
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6YQB9 | E-Value: 1.314e-156, PID: 53.65 | (Putative mitogen-activated protein kinase kinase ... [more] |
| A0A7N0TKK6 | E-Value: 2.438e-153, PID: 52.51 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A151RDG6 | E-Value: 5.751e-150, PID: 53.67 | (Mitogen-activated protein kinase kinase kinase 1 ... [more] |
| A0A0S3RDK8 | E-Value: 1.173e-148, PID: 48.44 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A7N0UN47 | E-Value: 3.106e-148, PID: 51.24 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A6A6KU09 | E-Value: 9.308e-148, PID: 52.42 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A1S3U6N3 | E-Value: 9.559e-148, PID: 49.26 | (mitogen-activated protein kinase kinase kinase 1-... [more] |
| A0A0L9UFW9 | E-Value: 1.330e-147, PID: 48.26 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A834XCI7 | E-Value: 2.982e-147, PID: 52.92 | (Mitogen-activated protein kinase kinase kinase 1-... [more] |
| A0A6A2Z1D7 | E-Value: 3.694e-147, PID: 47.91 | (Mitogen-activated protein kinase kinase kinase 1 ... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |