XM_017392849.1

Resource Type: 
Polypeptide
Name: 
XM_017392849.1
Identifier: 
XM_017392849.1-protein
Sequence: 
MSAASEGFSTRSFSELSEDEFMVRVGVDLVAAAKRNLGFLRLVDESSWLH
KRPTILEAIRRYDELWMPLISDLMVGISPPMILPPLDIEWVWFCHTLNPA
SYRQYCEARFSKLIGKAAIFNEENEDYALNRCREIWVQKYPNEPFENEED
SNQEKNIICNEDLLAEVSKQRCLYAKFHEPYMSELVYLIASKRRFKGFLH
MMQKFSDGCCRLVPTTDVLLMLMTHQSYPTVYATDVKEMEGIMWKIVGPC
DAVKPNEVEMTKKLWEQTFEEPYEKAGCEVISEVHKIKQPIYWKVTDLDV
NTKYKSLLPRFISEVCVMVKLNPKTNITAEGTSNEFLRLRMLRCHKELNI
NQPLSKFTSDSWKKALHLFCEFGTKGLVLELRHPKGRCFRGSSLVDTITF
TWNALLRAPSLTLGREISEKVRLFASMTPPVQAPYLLKCVADRVTDDSGA
MISDVILKMNQYRPQEGRWLSRTVLDHAGRECFVIRIRVAGGFWRRGGEV
PTAVKWEDRIMEIREGSWFYEAGSIGRAPAKVVGSAIPKEPPEGWQAAWC
FSTGHELLVKYGSSTSISGLCLDLKTPMPTNSWGDNCSIENKHLEIPMTQ
KNTMKETQNKKLMEMMVL
Sequence Length: 
618
Sequence Checksum: 
84e4969f3dedb028ced0ab7afe985fd4
View location in JBrowse: 
DCARv2_Chr4:23438663..23443413-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017392849.1, derives from mRNA, XM_017392849.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017392849.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017392849.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1CB48 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400063737}))

HSP 1 Score: 814.298 bits (2102), Expect = 0.000e+0
Identity = 389/583 (66.72%), Postives = 462/583 (79.25%), Query Frame = 0
 
Query:    3 AASEGFSTRSFSELSEDEFMVRVGVDLVAAAKRNLGFLRLVDESSWLHKRPTILEAIRRYDELWMPLISDLMVGISPPMILPPLDIEWVWFCHTLNPASYRQYCEARFSKLIGKAAIFNEENEDYALNRCREIWVQKYPNEPFENEEDSNQEKNII--CNEDLLAEVSKQR-CLYAKFHEPYMSELVYLIASKRRFKGFLHMMQKFSDGCCRLVPTTDVLLMLMTHQSYPTVYATDVKEMEGIMWKIVGPCDAVKPNEVEMTKKLWEQTFEEPYEKAGCEVISEVHKIKQPIYWKVTDLDVNTKYKSLLPRFISEVCVMVKLNPKTNITAEGTSNEFLRLRMLRCHKELNINQPLSKFTSDSWKKALHLFCEFGTKGLVLELRHPKGRCFRGSSLVDTITFTWNALLRAPSLTLGREISEKVRLFASMTPPVQAPYLLKCVADRVTDDSGAMISDVILKMNQYRPQEGRWLSRTVLDHAGRECFVIRIRVAGGFWRRGGEVPTAVKWEDRIMEIREGSWFYEAGSIGRAPAKVVGSAIPKEPPEGWQAAWCFSTGHELLVKYGSSTSISGLCLDLKTPMPTNS 582
            + S+  S RS SE+SE+E  VR+ +DLVAAA+RNLGFLRLV ES WL +RP ILE+IRRYD+LWMPLISDL  G +PPMILPPLDIEWVW+CHTLNP SYRQYCE+RFSKLIGKAAIFNEENE+YALNRC+ IWVQ+YP EPFENE D +  +N +   +E+LL EVSKQR CLY KF EPY SE+VYL+A+++R+KGFL+MM KF+D C  LVPT+D+LLM +THQSYPT Y  D K +E  M K+VG  + VK  +VE T KLWE+ F++PYEKAG   I +   +K PIYW+VTD DVN KY S+LPRF+ EVC+ V+L  K    +   S EFLRL+M+RCH+EL I++PLSKFTS  W+KALHL+CEFGTKG+VLE+R   G C +GSSL +++TF WN LLRAPSL   +EI +KVR+  S+TPPVQA YLLKCV DRV+DDSGAMISDVIL+MNQY PQEGRWLSRTVLDHAGRECFVIR RV GGFWRRG E P+AVKWEDRI+EIREG W Y AGSIGR P KVVG A PK+PPEGW A W  STGHELLV++ SS S SGL   +     T+S
Sbjct:    2 STSDVASMRSLSEISEEE-TVRLSIDLVAAARRNLGFLRLVTESQWLQERPNILESIRRYDQLWMPLISDLSNGSNPPMILPPLDIEWVWYCHTLNPVSYRQYCESRFSKLIGKAAIFNEENEEYALNRCKGIWVQRYPTEPFENESDDSNLQNPVSTVHEELLKEVSKQRLCLYTKFSEPYYSEIVYLMAARQRYKGFLYMMLKFADSCSVLVPTSDILLMWITHQSYPTAYTLDTKGLEEEMRKVVGGWENVKEEDVENTNKLWERIFDQPYEKAGGLAIGKAVDLKPPIYWEVTDTDVNAKYSSMLPRFLLEVCLTVRLKQKMKPLSWDASKEFLRLQMVRCHRELKIDRPLSKFTSQRWQKALHLYCEFGTKGMVLEVRQRGGGCIKGSSLRESVTFLWNDLLRAPSLNFAKEIDQKVRVATSITPPVQASYLLKCVPDRVSDDSGAMISDVILRMNQYHPQEGRWLSRTVLDHAGRECFVIRFRVGGGFWRRGAETPSAVKWEDRIIEIREGRWSYVAGSIGRVPEKVVGIAKPKDPPEGWHALWNLSTGHELLVQWESSRSTSGLNFSVINQQSTDS 583
[Close]
BLAST of XM_017392849.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6K374 ((Glycine-rich domain-containing protein 1 {ECO:0000313|EMBL:OIT19560.1}))

HSP 1 Score: 814.298 bits (2102), Expect = 0.000e+0
Identity = 400/620 (64.52%), Postives = 481/620 (77.58%), Query Frame = 0
 
Query:    1 MSAASEGFSTRSFSELSEDEFMVRVGVDLVAAAKRNLGFLRLVDESSWLHKRPTILEAIRRYDELWMPLISDLMVGISPPMILPPLDIEWVWFCHTLNPASYRQYCEARFSKLIGKAAIFNEENEDYALNRCREIWVQKYPNEPFENEEDSNQEKNI-ICNEDLLAEVSKQRCLYAKFHEPYMSELVYLIASKRRFKGFLHMMQKFSDGCCRLVPTTDVLLMLMTHQSYPTVYATDVKEMEGIMWKIVGPCDAVKPNEVEMTKKLWEQTFEEPYEKAGCEVISEVHKIKQPIYWKVTDLDVNTKYKSLLPRFISEVCVMVKLNPKTNITAEGTSNEFLRLRMLRCHKELNINQPLSKFTSDSWKKALHLFCEFGTKGLVLELRHPKGRCFRGSSLVDTITFTWNALLRAPSLTLGREISEKVRLFASMTPPVQAPYLLKCVADRVTDDSGAMISDVILKMNQYRPQEGRWLSRTVLDHAGRECFVIRIRVAGGFWRRGGEVPTAVKWEDRIMEIREGSWFYEAGSIGRAPAKVVGSAIPKEPPEGWQAAWCFSTGHELLVKYGSSTSISGLCLDLKTPMPTNSWGDNCS-IENKHLEIPMTQKNTMKETQ---NKKLMEM 615
            MS   +G S RS SE+SE+E  VR+ VDLVAA++RNLGFLRLV ES WLH++PTILE+IRRYD+LWMPLISDL  G +PPMILPPLDIEWVW+CHTLNP SYRQYCE+RF KL+GKA IFNEENE+YALNRC+EIWVQ+YP EPFENE DSN +K   I  EDLL EVSKQR LY KF EPY SE+VYLIA+++R+KGFL+MM +F+D    LVPT+D+LLM +THQSYPT YA D K +E  M K+VGP + VK   +E TKKLWE+ +++PYEKAG   I +  +IK PI+W+V+D DVN KY S+LPRF+ EVC+ VKL  K    +   S EFLRL+M+RCH+EL I++PL  FTS  W+KALHL+CEFGTKG+VLE+R   GRC +GSSL +++TF WN LLRAPSLTL +EI   VR+  S+TPP QA YLLKCV DRV+DDSGAMISDVILKMNQYRPQEGRWLSRTVLDHAGRECFVIR RV GGFWRRG E P+AVKWEDRI+EIREG W Y AGSIGRAP KVVG+A PK+PPEGW + W  STG ELLV+  SSTS SGL   L      +S       +E + ++  + +   ++ET+   N KL ++
Sbjct:    1 MSTWDDG-SMRSLSEISEEE-TVRLSVDLVAASRRNLGFLRLVSESHWLHEKPTILESIRRYDQLWMPLISDLSNGSTPPMILPPLDIEWVWYCHTLNPVSYRQYCESRFCKLVGKATIFNEENEEYALNRCKEIWVQRYPTEPFENESDSNLQKPCSILREDLLNEVSKQRHLYTKFSEPYYSEIVYLIAARQRYKGFLYMMHRFADTSSILVPTSDILLMWLTHQSYPTAYALDTKGLEEEMKKVVGPWEVVKEEGIEDTKKLWERIYDQPYEKAGGLAIGKAVEIKPPIHWEVSDTDVNAKYSSMLPRFLLEVCLTVKLKSKMKPLSFDASKEFLRLQMVRCHRELKIDKPLCNFTSQRWRKALHLYCEFGTKGMVLEVRQRGGRCIKGSSLRESVTFLWNDLLRAPSLTLAKEIDHTVRVATSITPPAQASYLLKCVPDRVSDDSGAMISDVILKMNQYRPQEGRWLSRTVLDHAGRECFVIRFRVGGGFWRRGAETPSAVKWEDRIIEIREGHWSYVAGSIGRAPEKVVGTAKPKDPPEGWHSMWNLSTGDELLVRSESSTSSSGLNFSLINQQSNDSVSLQVKLLEGRQMQYDVKKSGLVEETEHLPNDKLKQI 618
[Close]
BLAST of XM_017392849.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7WBI4 ((uncharacterized protein LOC104224608 {ECO:0000313|RefSeq:XP_009774596.1}))

HSP 1 Score: 813.527 bits (2100), Expect = 0.000e+0
Identity = 394/610 (64.59%), Postives = 474/610 (77.70%), Query Frame = 0
 
Query:    3 AASEGFSTRSFSELSEDEFMVRVGVDLVAAAKRNLGFLRLVDESSWLHKRPTILEAIRRYDELWMPLISDLMVGISPPMILPPLDIEWVWFCHTLNPASYRQYCEARFSKLIGKAAIFNEENEDYALNRCREIWVQKYPNEPFENEEDSNQEKNI-ICNEDL--LAEVSKQRCLYAKFHEPYMSELVYLIASKRRFKGFLHMMQKFSDGCCRLVPTTDVLLMLMTHQSYPTVYATDVKEMEGIMWKIVGPCDAVKPNEVEMTKKLWEQTFEEPYEKAGCEVISEVHKIKQPIYWKVTDLDVNTKYKSLLPRFISEVCVMVKLNPKTNITAEGTSNEFLRLRMLRCHKELNINQPLSKFTSDSWKKALHLFCEFGTKGLVLELRHPKGRCFRGSSLVDTITFTWNALLRAPSLTLGREISEKVRLFASMTPPVQAPYLLKCVADRVTDDSGAMISDVILKMNQYRPQEGRWLSRTVLDHAGRECFVIRIRVAGGFWRRGGEVPTAVKWEDRIMEIREGSWFYEAGSIGRAPAKVVGSAIPKEPPEGWQAAWCFSTGHELLVKYGSSTSISGLCLDLKTPMPTNSWGDNCSIENKHLEIPMTQKNTMKETQN 609
            + S+G   RS SE+SE+E  VR+ VDLVAA++RNLGFLRLV ES WLH++PTILE+IRRYD+LWMPLISDL  G +PPMILPPLDIEWVW+CHTLNP SYRQYCE+RF KLIGKA IFNEENE+YALNRC+EIWVQ+YP EPFENE DSN +  + I +EDL  L EVSKQR LY KF EPY SE+VYLIA+++R+KGFL+MM +F+D C  LVPT+D+LLM +THQSYP  YA D K +E  M K+VGP + VK   +E TKKLWE+ +++PYEKAG   I +  +IK PI+W+VTD DVN KY S+LPRF+ EVC+ VKL  K    +   S EFLRL+M+RCH+EL I++PL  FTS  W+KALHL+CEFGTKGLVLE+R   GRC +GSSL +++TF WN LLRAPSLTL +EI + VR+  S+TPP QA YLLKCV DRV+DDSGAMISDVILKMNQYRPQEGRWLSRTVLDHAGRECFVIR RV  GFWRRG E P+AVKWEDRI+EI EG W Y AGSIGRAP KVVG+A PK+PPEGW + W  STG ELLV+  SSTSI  L +    P+          +E + ++  +    + +ET+N
Sbjct:    2 STSDGAFMRSLSEISEEE-TVRLSVDLVAASRRNLGFLRLVSESHWLHEKPTILESIRRYDQLWMPLISDLYNGSTPPMILPPLDIEWVWYCHTLNPVSYRQYCESRFCKLIGKATIFNEENEEYALNRCKEIWVQRYPTEPFENESDSNLQHPVSILHEDLHLLNEVSKQRHLYTKFSEPYYSEIVYLIAARQRYKGFLYMMHRFADTCSILVPTSDILLMWLTHQSYPIAYALDTKGLEEEMRKVVGPWEVVKEEGIEDTKKLWERIYDQPYEKAGGLAIGKAVEIKPPIHWEVTDTDVNAKYSSMLPRFLLEVCLTVKLKSKMKPLSCDASKEFLRLQMVRCHRELKIDKPLCNFTSQRWRKALHLYCEFGTKGLVLEVRQRGGRCIKGSSLRESVTFLWNDLLRAPSLTLSKEIDQTVRVATSITPPAQASYLLKCVPDRVSDDSGAMISDVILKMNQYRPQEGRWLSRTVLDHAGRECFVIRFRVGSGFWRRGPETPSAVKWEDRIIEISEGHWSYVAGSIGRAPEKVVGTAKPKDPPEGWHSLWNLSTGDELLVRSESSTSI--LIILRTQPLQVK------LLEGRQMQYEVNNSGSAEETEN 602
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BLAST of XM_017392849.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U1H0 ((glycine-rich domain-containing protein 1 {ECO:0000313|RefSeq:XP_011092672.2}))

HSP 1 Score: 811.216 bits (2094), Expect = 0.000e+0
Identity = 391/579 (67.53%), Postives = 473/579 (81.69%), Query Frame = 0
 
Query:    3 AASEGFST-RSFSELSEDEFMVRVGVDLVAAAKRNLGFLRLVDESSWLHKRPTILEAIRRYDELWMPLISDLMVGISPPMILPPLDIEWVWFCHTLNPASYRQYCEARFSKLIGKAAIFNEENEDYALNRCREIWVQKYPNEPFENEEDSNQEK-NIICNEDLLAEVSKQRCLYAKFHEPYMSELVYLIASKRRFKGFLHMMQKFSDGCCRLVPTTDVLLMLMTHQSYPTVYATDVKEMEGIMWKIVGPCDAVKPNEVEMTKKLWEQTFEEPYEKAGCEVISEVHKIKQPIYWKVTDLDVNTKYKSLLPRFISEVCVMVKLNPKTNITAEGTSNEFLRLRMLRCHKELNINQPLSKFTSDSWKKALHLFCEFGTKGLVLELRHPKGRCFRGSSLVDTITFTWNALLRAPSLTLGREISEKVRLFASMTPPVQAPYLLKCVADRVTDDSGAMISDVILKMNQYRPQEGRWLSRTVLDHAGRECFVIRIRVAGGFWRRGGEVPTAVKWEDRIMEIREGSWFYEAG--SIGRAPAKVVGSAIPKEPPEGWQAAWCFSTGHELLVKYG-SSTSISGLCLDLKT 576
            +ASEG S+ RS SE+SE+E  VR  VDLVAAA+RNLGFLRLV +S WLH++ T+LEAIRRYD+LWMPLI+DL  G  PPMILPPLD+EWVW+CHTL PA+YR YCE+RFSKLIGK AIF+EENE+YAL+RCREIW  K+P+EPFENE DSN E  + + +EDLL ++SKQR L  +F EPY SE+VYL+A+K+R+KGF++M+ +F D C  LVPT+DVLLM +THQSYPTVYA DVK +EG M KIV   +AVK  ++E TK LWE+TF++PYEKAG   I+     + P YW VT+ DVNT+YKS++PRF+ EVCV VKL             EFLRLRM +CH+E+ +++P+S+FTS+SW+KA HL+CEFGTKGL+LELRH  G CF+GSSL ++I+F WN LLRAPSLTLG+EI E+VR  AS+TPPVQA YLLKCV DRVTDDSGAMISDVILKMNQYRPQEGRWLSRTVLDHA RECFV+R+RV GGFWRRG E PTAVKWEDRI+EIREGSW Y  G  SIGR+P KVVG+A PKEPPEG+QA+W FSTG+ELL++Y  SS+SISGL  DL+ 
Sbjct:    2 SASEGISSMRSLSEISEEE-TVRFSVDLVAAARRNLGFLRLVADSPWLHQQSTLLEAIRRYDQLWMPLIADLTTGSKPPMILPPLDVEWVWYCHTLQPANYRDYCESRFSKLIGKPAIFDEENEEYALDRCREIWESKFPSEPFENEADSNLECCSSVLSEDLLDQMSKQRNLNTRFSEPYYSEMVYLVAAKQRYKGFIYMVHRFGDECSCLVPTSDVLLMWLTHQSYPTVYAVDVKGLEGDMEKIVWVWEAVKEEDIEETKMLWERTFDQPYEKAGGGAITRPITNEPPFYWDVTNTDVNTRYKSMVPRFLFEVCVSVKLISNIRQMKTDPKREFLRLRMAKCHREVKMDKPVSQFTSESWQKAWHLYCEFGTKGLILELRHRDGCCFKGSSLRESISFAWNDLLRAPSLTLGKEIDERVRTTASITPPVQASYLLKCVPDRVTDDSGAMISDVILKMNQYRPQEGRWLSRTVLDHASRECFVVRMRVGGGFWRRGAEAPTAVKWEDRIIEIREGSWSYVTGSSSIGRSPEKVVGTATPKEPPEGFQASWSFSTGNELLIQYDTSSSSISGLRFDLQN 579
[Close]
BLAST of XM_017392849.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BF66 ((Uncharacterized protein {ECO:0000313|EMBL:MPA67529.1}) (Fragment))

HSP 1 Score: 810.061 bits (2091), Expect = 0.000e+0
Identity = 385/574 (67.07%), Postives = 473/574 (82.40%), Query Frame = 0
 
Query:   11 RSFSELSEDEFMVRVGVDLVAAAKRNLGFLRLVDESSWLHKRPTILEAIRRYDELWMPLISDLMVGISPPMILPPLDIEWVWFCHTLNPASYRQYCEARFSKLIGKAAIFNEENEDYALNRCREIWVQKYPNEPFENEEDSNQEKN--IICNEDLLAEVSKQRCLYAKFHEPYMSELVYLIASKRRFKGFLHMMQKFSDGCCRLVPTTDVLLMLMTHQSYPTVYATDVKEMEGIMWKIVGPCDAVKPNEVEMTKKLWEQTFEEPYEKAGCEVISEVHKIKQPIYWKVTDLDVNTKYKSLLPRFISEVCVMVKLNPKTNITAEGTSNEFLRLRMLRCHKELNINQPLSKFTSDSWKKALHLFCEFGTKGLVLELRHPKGRCFRGSSLVDTITFTWNALLRAPSLTLGREISEKVRLFASMTPPVQAPYLLKCVADRVTDDSGAMISDVILKMNQYRPQEGRWLSRTVLDHAGRECFVIRIRVAGGFWRRGGEVPTAVKWEDRIMEIREGSWFYEAGSIGRAPAKVVGSAIPKEPPEGWQAAWCFSTGHELLVKYGSSTSISGLCLDLKTPMPTNS 582
            RS SE++E E  VRV +DLV+AA+R++GFLRLV +S WLH+RPT++EAIRRYDELWMPLISDL VG +PPM++PP+D+EWVW+CHTLNP SYRQYCE+RFSKLIGK AIF+EENE+YA+NRCREIW+++YP+E FENE DS++ ++   I   DLL EV KQ+ L  KF EPY+SE+VYLIA+++R+KGFL+M+Q+F+DGC RL+P +D+LLM +THQSYPTVYA DVKEMEG M K+VG  +AVK  EVE TKKLWE+TF++PY KAGC  I  +  +K P+YW+VT+ DVN KY+S+ PRF+ EVCV+VKLN K     E  S +FLRL+M+RCH+EL I+ P+  F+ DSW+K  H +CEFGT+G+VLELRH  GRCF+GSSL DT TF WN LLRA SLTLGRE+ +KVR+  S+TPPVQA YLLKCV DRVTDDSGAMISDVIL+MNQYRPQ+GRWLSRTVLDHAGRECFV+R+RV GGFWRRGGE P+AVKWEDRI+EIREGSW Y AGSIGRAP  VVG+A PKEP E W A+WCFSTG EL++++ SS SI  L   L+     +S
Sbjct:    1 RSLSEITE-EATVRVSIDLVSAARRHVGFLRLVADSHWLHQRPTVIEAIRRYDELWMPLISDLTVGPTPPMVVPPIDVEWVWYCHTLNPVSYRQYCESRFSKLIGKPAIFDEENEEYAVNRCREIWIRRYPSEQFENEFDSDEVRDPAAITIGDLLGEVLKQKSLCTKFSEPYISEIVYLIAARQRYKGFLYMLQRFADGCPRLIPGSDILLMWLTHQSYPTVYAADVKEMEGDMGKVVGLVEAVKEEEVEETKKLWERTFDQPYGKAGCAAIGRLVWVKPPVYWEVTNADVNVKYRSIAPRFLLEVCVIVKLNSKMKAMQEDISRDFLRLQMVRCHRELKIDTPIFNFSLDSWRKGWHAYCEFGTRGVVLELRHRGGRCFKGSSLRDTETFLWNDLLRAHSLTLGREVDQKVRVVTSITPPVQASYLLKCVPDRVTDDSGAMISDVILRMNQYRPQDGRWLSRTVLDHAGRECFVVRMRVGGGFWRRGGETPSAVKWEDRIIEIREGSWSYVAGSIGRAPENVVGTATPKEPSEHWNASWCFSTGDELMMRWESSGSIPSLSFYLENQTSPDS 573
[Close]
BLAST of XM_017392849.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9GI53 ((Uncharacterized protein {ECO:0000313|EMBL:PIN04956.1}))

HSP 1 Score: 808.52 bits (2087), Expect = 0.000e+0
Identity = 384/578 (66.44%), Postives = 465/578 (80.45%), Query Frame = 0
 
Query:    3 AASEGFST-RSFSELSEDEFMVRVGVDLVAAAKRNLGFLRLVDESSWLHKRPTILEAIRRYDELWMPLISDLMVGISPPMILPPLDIEWVWFCHTLNPASYRQYCEARFSKLIGKAAIFNEENEDYALNRCREIWVQKYPNEPFENEEDSNQEK-NIICNEDLLAEVSKQRCLYAKFHEPYMSELVYLIASKRRFKGFLHMMQKFSDGCCRLVPTTDVLLMLMTHQSYPTVYATDVKEMEGIMWKIVGPCDAVKPNEVEMTKKLWEQTFEEPYEKAGCEVISEVHKIKQPIYWKVTDLDVNTKYKSLLPRFISEVCVMVKLNPKTNITAEGTSNEFLRLRMLRCHKELNINQPLSKFTSDSWKKALHLFCEFGTKGLVLELRHPKGRCFRGSSLVDTITFTWNALLRAPSLTLGREISEKVRLFASMTPPVQAPYLLKCVADRVTDDSGAMISDVILKMNQYRPQEGRWLSRTVLDHAGRECFVIRIRVAGGFWRRGGEVPTAVKWEDRIMEIREGSWFYEAG--SIGRAPAKVVGSAIPKEPPEGWQAAWCFSTGHELLVKYGSSTSISGLCLDLKT 576
            +ASEG S+ R+ SE+SE+E  VR  +DLVAAA+RNLGFLRLV++S WLH+ PTI EAIRRYDELWMPLI+DL  G  PPMILPPLD+EWVW+CHTL PA+YR YCE+RFSKLIGK AIF+EENE+YALNRCREIW  K+P+EPFENE DSN E  +  CN+DL  +V KQR LY +F EPY SE+VYL+A+K+R+KGF++M+++F+D C  LVPT+DVLLM +THQSYPTVYA DVKE E  M KIVG  +AVK  ++E TK LWE+T ++PYEKAG   I      + P YW VTD DVN +YKS+ PRF+ EVC+ VK+ P   +     S EFLRLRM++CH+EL +++PLS FTS SW+KA HL+CEFGTKGL++ELRH  GRC +GSSL D+I+F+WN LLRAPSL   +EI E+V   AS+TPPVQ  YLLKCV DRVTDDSGAM+SDVILKMN YRPQEGRWLSRTVLDHAGRECFV+R+RV GGFWRRGGE P  VKWEDRI++I EGSW Y  G  SIGR+P KVVG+A PKEPPEG+QA+W FSTG+ELL+++ SSTS+S L  DL+ 
Sbjct:    2 SASEGISSIRTLSEISEEE-TVRFSIDLVAAARRNLGFLRLVNDSHWLHQEPTIFEAIRRYDELWMPLIADLTNGSKPPMILPPLDVEWVWYCHTLKPANYRHYCESRFSKLIGKPAIFDEENEEYALNRCREIWEYKFPSEPFENEVDSNSEYLSSFCNDDLFDQVLKQRNLYIRFSEPYYSEMVYLVAAKQRYKGFMYMVRRFADECSCLVPTSDVLLMWLTHQSYPTVYAVDVKEFERDMEKIVGVWEAVKEEDIEETKMLWERTLDQPYEKAGGAAIVRSITDEPPFYWDVTDTDVNARYKSMTPRFLFEVCISVKIIPNMKLRKTDHSREFLRLRMMKCHRELKMDKPLSYFTSKSWQKAWHLYCEFGTKGLIIELRHRGGRCSKGSSLRDSISFSWNDLLRAPSLAYEKEIDERVGTIASITPPVQGSYLLKCVPDRVTDDSGAMVSDVILKMNHYRPQEGRWLSRTVLDHAGRECFVVRMRVGGGFWRRGGEAPKVVKWEDRIIQICEGSWSYVIGSSSIGRSPEKVVGTATPKEPPEGFQASWSFSTGNELLIQWDSSTSVSRLRFDLQN 578
[Close]
BLAST of XM_017392849.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4B3A8 ((glycine-rich domain-containing protein 2 {ECO:0000313|RefSeq:XP_016483334.1}))

HSP 1 Score: 808.135 bits (2086), Expect = 0.000e+0
Identity = 398/610 (65.25%), Postives = 476/610 (78.03%), Query Frame = 0
 
Query:    3 AASEGFSTRSFSELSEDEFMVRVGVDLVAAAKRNLGFLRLVDESSWLHKRPTILEAIRRYDELWMPLISDLMVGISPPMILPPLDIEWVWFCHTLNPASYRQYCEARFSKLIGKAAIFNEENEDYALNRCREIWVQKYPNEPFENEEDSNQEKNI-ICNEDL--LAEVSKQRCLYAKFHEPYMSELVYLIASKRRFKGFLHMMQKFSDGCCRLVPTTDVLLMLMTHQSYPTVYATDVKEMEGIMWKIVGPCDAVKPNEVEMTKKLWEQTFEEPYEKAGCEVISEVHKIKQPIYWKVTDLDVNTKYKSLLPRFISEVCVMVKLNPKTNITAEGTSNEFLRLRMLRCHKELNINQPLSKFTSDSWKKALHLFCEFGTKGLVLELRHPKGRCFRGSSLVDTITFTWNALLRAPSLTLGREISEKVRLFASMTPPVQAPYLLKCVADRVTDDSGAMISDVILKMNQYRPQEGRWLSRTVLDHAGRECFVIRIRVAGGFWRRGGEVPTAVKWEDRIMEIREGSWFYEAGSIGRAPAKVVGSAIPKEPPEGWQAAWCFSTGHELLVKYGSSTSISGLCLDLKTPMPTNSWGDNCSIENKHLEIPMTQKNTMKETQN 609
            + S+G   RS SE+SE+E  VR+ VDLVAA++RNLGFLRLV ES WLH++PTILE+IRRYD+LWMPLISDL  G +PPMILPPLDIEWVW+CHTLNP SYRQYCE+RF KLIGKA IFNEENE+YALNRC+EIWVQ+YP EPFENE DSN +  + I +EDL  L EVSKQR LY KF EPY SE+VYLIA+++R+KGFL+MM +F+D C  LVPT+D+LLM +THQSYP  YA D K +E  M K+VGP + VK   +E TKKLWE+ +++PYEKAG   I +  +IK PI+W+VTD DVN KY S+LPRF+ EVC+ VKL  K    +   S EFLRL+M+RCH+EL  ++PL  FTS  W+KALHL+CEFGTKGLVLE+R   GRC +GSSL +++TF WN LLRAPSLTL +EI + VR+  S+TPP QA YLLKCV DRV+DDSGAMISDVILKMNQYRPQEGRWLSRTVLDHAGRECFVIR RV  GFWRRG E P+AVKWEDRI+EIREG W Y AGSIGRAP KVVGSA PK+PPEGW + W  STG ELLV+  SSTS SGL   L     T+S      +E + ++  +    + +ET+N
Sbjct:    2 STSDGAFMRSLSEISEEE-TVRLSVDLVAASRRNLGFLRLVSESHWLHEKPTILESIRRYDQLWMPLISDLYNGSTPPMILPPLDIEWVWYCHTLNPVSYRQYCESRFCKLIGKATIFNEENEEYALNRCKEIWVQRYPTEPFENESDSNLQHPVSILHEDLHLLNEVSKQRHLYTKFSEPYYSEIVYLIAARQRYKGFLYMMHRFADTCSILVPTSDILLMWLTHQSYPIAYALDTKGLEEEMRKVVGPWEVVKEEGIEDTKKLWERIYDQPYEKAGGLAIGKAVEIKPPIHWEVTDTDVNAKYSSMLPRFLLEVCLTVKLKSKMKPLSCDASKEFLRLQMVRCHRELKTDKPLCNFTSQRWRKALHLYCEFGTKGLVLEVRQRGGRCIKGSSLRESVTFLWNDLLRAPSLTLSKEIDQTVRVATSITPPAQASYLLKCVPDRVSDDSGAMISDVILKMNQYRPQEGRWLSRTVLDHAGRECFVIRFRVGSGFWRRGPETPSAVKWEDRIIEIREGHWSYVAGSIGRAPEKVVGSAKPKDPPEGWHSLWNLSTGDELLVRSESSTSSSGLSFSLINQQSTDSAVK--LLEGRQMQYEVNNSGSAEETEN 608
[Close]
BLAST of XM_017392849.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B3L9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8536796.1}))

HSP 1 Score: 807.364 bits (2084), Expect = 0.000e+0
Identity = 370/558 (66.31%), Postives = 460/558 (82.44%), Query Frame = 0
 
Query:    6 EGFSTRSFSELSEDEFMVRVGVDLVAAAKRNLGFLRLVDESSWLHKRPTILEAIRRYDELWMPLISDLMVGISPPMILPPLDIEWVWFCHTLNPASYRQYCEARFSKLIGKAAIFNEENEDYALNRCREIWVQKYPNEPFENEEDSNQ--EKNIICNEDLLAEVSKQRCLYAKFHEPYMSELVYLIASKRRFKGFLHMMQKFSDGCCRLVPTTDVLLMLMTHQSYPTVYATDVKEMEGIMWKIVGPCDAVKPNEVEMTKKLWEQTFEEPYEKAGCEVISEVHKIKQPIYWKVTDLDVNTKYKSLLPRFISEVCVMVKLNPKTNITAEGTSNEFLRLRMLRCHKELNINQPLSKFTSDSWKKALHLFCEFGTKGLVLELRHPKGRCFRGSSLVDTITFTWNALLRAPSLTLGREISEKVRLFASMTPPVQAPYLLKCVADRVTDDSGAMISDVILKMNQYRPQEGRWLSRTVLDHAGRECFVIRIRVAGGFWRRGGEVPTAVKWEDRIMEIREGSWFYEAGSIGRAPAKVVGSAIPKEPPEGWQAAWCFSTGHELLVKY 561
            +G STRS S ++E E  VR+ VDLV+AA R++GFLRLV +S WLH+RPT++EAIRRYDELWMPLISDL VG +PP+++PP+D+EWVW+CHTLNP SYR+YCE+RFSKLIGK AIF+EENE+YA NRCREIW+++YP+E FENE DS++  + + I NEDLL EV KQ+ L   F EPYMSE+VYLIA+++R+KGFL+ +Q+F+D C RLVPT+D+LLML+THQSYPTVYA DV EME  M K+VG  +AVK  +VE TKKLWE+TF++PYEKAG   I  +  +K P+YW+VT+ DVN KY+S+ PRF+ EVCV +KLN K     E  S +FLRL+M+RCH+EL I+ P+  F+ DSW+K  H +CEFGT+G+V+ELRH  G CF+GSSL DT TF WN LLRAPSLTLGRE+ + +R   S+TPPVQA YLLKCV DRVTDDSGAMISDVIL++NQYRPQEGRWLSRTVLDHAGR CF++R+RV GGFWRRGGE P+AVKWEDR++EIREGSW Y AGSIGRAP  VVG+A PK+P E W A+WCFSTG EL++++
Sbjct:   12 DGMSTRSLSGITE-EATVRLSVDLVSAAGRHVGFLRLVADSHWLHQRPTVVEAIRRYDELWMPLISDLTVGSTPPILVPPIDVEWVWYCHTLNPVSYRRYCESRFSKLIGKPAIFDEENEEYAWNRCREIWIRRYPSEQFENEFDSDEVRDADAITNEDLLGEVLKQKTLCTLFSEPYMSEIVYLIAARQRYKGFLYNLQRFADECPRLVPTSDILLMLLTHQSYPTVYAADVTEMERDMGKVVGLAEAVKEEQVEETKKLWERTFDQPYEKAGGAAIGRLVWVKPPVYWEVTNADVNVKYRSMAPRFLLEVCVFMKLNSKMKAMGEDISRDFLRLQMVRCHRELKIDTPIFNFSLDSWRKGWHAYCEFGTRGVVIELRHRGGHCFKGSSLRDTETFLWNDLLRAPSLTLGREVDQNIRFVTSITPPVQASYLLKCVPDRVTDDSGAMISDVILRLNQYRPQEGRWLSRTVLDHAGRACFIVRMRVGGGFWRRGGETPSAVKWEDRVVEIREGSWSYVAGSIGRAPDNVVGTATPKKPSEHWNASWCFSTGDELMLRW 568
[Close]
BLAST of XM_017392849.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7EQ03 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g099980.3.1}))

HSP 1 Score: 806.979 bits (2083), Expect = 0.000e+0
Identity = 389/583 (66.72%), Postives = 460/583 (78.90%), Query Frame = 0
 
Query:    3 AASEGFSTRSFSELSEDEFMVRVGVDLVAAAKRNLGFLRLVDESSWLHKRPTILEAIRRYDELWMPLISDLMVGISPPMILPPLDIEWVWFCHTLNPASYRQYCEARFSKLIGKAAIFNEENEDYALNRCREIWVQKYPNEPFENE-EDSNQEKNI-ICNEDLLAEVSKQR-CLYAKFHEPYMSELVYLIASKRRFKGFLHMMQKFSDGCCRLVPTTDVLLMLMTHQSYPTVYATDVKEMEGIMWKIVGPCDAVKPNEVEMTKKLWEQTFEEPYEKAGCEVISEVHKIKQPIYWKVTDLDVNTKYKSLLPRFISEVCVMVKLNPKTNITAEGTSNEFLRLRMLRCHKELNINQPLSKFTSDSWKKALHLFCEFGTKGLVLELRHPKGRCFRGSSLVDTITFTWNALLRAPSLTLGREISEKVRLFASMTPPVQAPYLLKCVADRVTDDSGAMISDVILKMNQYRPQEGRWLSRTVLDHAGRECFVIRIRVAGGFWRRGGEVPTAVKWEDRIMEIREGSWFYEAGSIGRAPAKVVGSAIPKEPPEGWQAAWCFSTGHELLVKYGSSTSISGLCLDLKTPMPTNS 582
            + S+  S RS SE+SE+E  VR+ +DLVAAA+RNLGFLRLV ES WL +RPTILE+IRRYD+LWMPLISDL  G +PPMILPP DIEWVW+CHTLN  SYRQYCE+RFSKLIGKAAIFNEEN +YALNRC+EIWV +YP EPFENE +DSN +K +   +E+LL EVSKQR  L  KF EPY SE+VYLIA+++R+KGFL+MM K +D C  LVPT+D+LLM +THQSYPT Y  D K +E  M K+VG  + VK  +VE TKKLWE+ F++PYEKAG   I +   +K PIYW+VTD DVN KY S+LPRF+ EVC+ VKL PK    +   S EFLR +M+RCH+EL I++P SKFTS  W+KALHL+CEFGTKG+VLE+R   G C +GSSL +++TF WN LLRAPSL   +EI +KVR+  S+TPPVQA YLLKCV DRV+DDSGAMISDVIL+MNQY PQEGRWLSRTVLDHAGRECFVIR RV GGFWRRG E P+AVKWEDRI+EIREG W Y AGSIGRAP KVVG A PK+PPEGW A W  STGHELLV++ SS S SGL   +     T+S
Sbjct:    2 STSDVASMRSLSEISEEE-TVRLSIDLVAAARRNLGFLRLVTESQWLQERPTILESIRRYDQLWMPLISDLSNGSNPPMILPPFDIEWVWYCHTLNSVSYRQYCESRFSKLIGKAAIFNEENGEYALNRCKEIWVHRYPTEPFENEFDDSNLQKPVSTVHEELLKEVSKQRNYLCTKFSEPYYSEIVYLIAARQRYKGFLYMMHKLADSCSVLVPTSDILLMRITHQSYPTAYTLDTKGLEEEMRKVVGGWENVKEADVENTKKLWERIFDQPYEKAGGLAIGKAVDLKPPIYWEVTDTDVNAKYSSMLPRFLLEVCLSVKLKPKMKPLSCDASKEFLRFQMVRCHRELKIDRPFSKFTSQRWQKALHLYCEFGTKGMVLEVRQRGGGCIKGSSLRESVTFLWNDLLRAPSLNFAKEIDQKVRVATSITPPVQASYLLKCVPDRVSDDSGAMISDVILRMNQYHPQEGRWLSRTVLDHAGRECFVIRFRVGGGFWRRGAETPSAVKWEDRIIEIREGRWSYVAGSIGRAPEKVVGIAKPKDPPEGWHALWNLSTGHELLVQWESSRSTSGLNFSVINQQSTDS 583
[Close]
BLAST of XM_017392849.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2XYS5 ((Uncharacterized protein {ECO:0000313|EMBL:PHT62481.1}))

HSP 1 Score: 805.053 bits (2078), Expect = 0.000e+0
Identity = 394/620 (63.55%), Postives = 480/620 (77.42%), Query Frame = 0
 
Query:    3 AASEGFSTRSFSELSEDEFMVRVGVDLVAAAKRNLGFLRLVDESSWLHKRPTILEAIRRYDELWMPLISDLMVGISPPMILPPLDIEWVWFCHTLNPASYRQYCEARFSKLIGKAAIFNEENEDYALNRCREIWVQKYPNEPFENEEDSNQEKNIIC--NEDLLAEVSKQRCLYAKFHEPYMSELVYLIASKRRFKGFLHMMQKFSDGCCRLVPTTDVLLMLMTHQSYPTVYATDVKEMEGIMWKIVGPCDAVKPNEVEMTKKLWEQTFEEPYEKAGCEVISEVHKIKQPIYWKVTDLDVNTKYKSLLPRFISEVCVMVKLNPKTNITAEGTSNEFLRLRMLRCHKELNINQPLSKFTSDSWKKALHLFCEFGTKGLVLELRHPKGRCFRGSSLVDTITFTWNALLRAPSLTLGREISEKVRLFASMTPPVQAPYLLKCVADRVTDDSGAMISDVILKMNQYRPQEGRWLSRTVLDHAGRECFVIRIRVAGGFWRRGGEVPTAVKWEDRIMEIREGSWFYEAGSIGRAPAKVVGSAIPKEPPEGWQAAWCFSTGHELLVKYGSSTSISGLCLDLKTPMPTNSWGDNCSIENKHLEIPMTQKNTMKETQ---NKKLMEMMV 617
            + S+G S RS SE+SE+E + R+ VDLVAAA+RNLGFLRLV+ES WLH+ PTILE+IRRYDELWMPLISDL  G SPPMILPPLDIEWVW+CHTLNP  YRQYCE+RF  LIGKAAIFNEENE+YALNRC+EIW+Q+YP EPFENE D +  +  +   +E LL EV+KQR L+ KF EPY SE+VYLIA+++R+KGFL+MM +F D C  LVPT+D+LLM +THQSYPT Y  D K +E  M K+VG  +AVK  ++E T+KLW++ F++PYEKAG   I +   +K PIYW+VTD DVN KY S+LPRF+ EVC+ VKL PK    +   S EFLRL+M+RCH+EL I++PLS FTS  W+KALHL+CEFGTKG+VLE+R   G C +GS L +++TF WN LLRAPSL L +EI +KVR+  S+TPPVQA YLLKCV DRV+DDSGAMISDVIL+MNQY PQEGRWLSRTVLDHAGRECFVIR RV GGFWRRG E P+AVKWEDRI+EIREG W Y AGSIGRAP KVVG A PK+PPEGW A W  STG+ELLV++ SS S SGL   L     T+S      +E + ++  + +    +ET+   N+KL ++ V
Sbjct:    2 STSDGASMRSLSEISEEETL-RLSVDLVAAARRNLGFLRLVNESLWLHQTPTILESIRRYDELWMPLISDLSDGSSPPMILPPLDIEWVWYCHTLNPVGYRQYCESRFYTLIGKAAIFNEENEEYALNRCKEIWIQRYPTEPFENEYDDSTLQTSVSTFHEYLLKEVTKQRHLFTKFSEPYYSEIVYLIAARQRYKGFLYMMHRFGDSCSVLVPTSDILLMWITHQSYPTAYTLDTKGLEEEMRKVVGAWEAVKKEDIEDTEKLWDRIFDQPYEKAGGLAIGKAVDVKPPIYWEVTDTDVNAKYSSMLPRFLLEVCLTVKLKPKMKTLSCDASKEFLRLQMVRCHRELKIDRPLSNFTSQRWQKALHLYCEFGTKGMVLEVRQRGGGCIKGSRLRESVTFLWNDLLRAPSLNLAKEIDQKVRVATSITPPVQASYLLKCVPDRVSDDSGAMISDVILRMNQYHPQEGRWLSRTVLDHAGRECFVIRFRVGGGFWRRGAETPSAVKWEDRIIEIREGRWSYVAGSIGRAPEKVVGIAKPKDPPEGWHAHWNLSTGYELLVRWESSRSSSGLSFSLTNQQSTDSMVK--LLEGRQMQYEVKKSGLGEETEHVPNEKLKQVEV 618
Match NameStatsDescription
M1CB48E-Value: 0.000e+0, PID: 66.72(Uncharacterized protein {ECO:0000313|EnsemblPlant... [more]
A0A1J6K374E-Value: 0.000e+0, PID: 64.52(Glycine-rich domain-containing protein 1 {ECO:000... [more]
A0A1U7WBI4E-Value: 0.000e+0, PID: 64.59(uncharacterized protein LOC104224608 {ECO:0000313... [more]
A0A6I9U1H0E-Value: 0.000e+0, PID: 67.53(glycine-rich domain-containing protein 1 {ECO:000... [more]
A0A5B7BF66E-Value: 0.000e+0, PID: 67.07(Uncharacterized protein {ECO:0000313|EMBL:MPA6752... [more]
A0A2G9GI53E-Value: 0.000e+0, PID: 66.44(Uncharacterized protein {ECO:0000313|EMBL:PIN0495... [more]
A0A1S4B3A8E-Value: 0.000e+0, PID: 65.25(glycine-rich domain-containing protein 2 {ECO:000... [more]
A0A5J5B3L9E-Value: 0.000e+0, PID: 66.31(Uncharacterized protein {ECO:0000313|EMBL:KAA8536... [more]
A0A3Q7EQ03E-Value: 0.000e+0, PID: 66.72(Uncharacterized protein {ECO:0000313|EnsemblPlant... [more]
A0A2G2XYS5E-Value: 0.000e+0, PID: 63.55(Uncharacterized protein {ECO:0000313|EMBL:PHT6248... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.