Resource Type:
Polypeptide
Name:
XM_017393270.1
Identifier:
XM_017393270.1-protein
Sequence:
MADNPTQSSAKQLQSSNSITMDPNIIPQQQNQTQITSASNLNNNNNNINS
IDLPQLTPSNQQQQQFNLQQQHSNNNMMGPTSSFQMQRSPSMSRLQQQQQ
YSLAAAARQQAAVAGIYGQMSFGGNASQQQQNSNNLNNNNQQQQMGQMGQ
VGNANLSRSGLMGAQGGNLPMLPAQAAAQLNLQSQLLASPRQKTGLAQAG
TQFHPGNSPAQSLQGMQAMGMMGNFNIGSQIRGNGSIAYTQQRLNQGQMR
QQLSQQNQLNSTQKLQAQSLGRTSFINPQLSGLAQNGQPALIQNTLSQQQ
WLKQVPAMSAPNSPSYRLQHQRQQQALLQQQLASSSQMQQNSSALNPQQL
SQMVQQQQQQSAGQLQLQQQQQPVPPTQQQILHHQQQSPRMATPAGQKSL
SLTGSQPDATASGTTTPGGSSSQGTEASNQLLGKRRIQDLVSQVDPQAKL
DPVVEDMLLEIADNFIDSVTSYACSLAKHRNSSTVESKDVLLHLEKNLGL
SIPGYSSEERKHQENDSSSHAHKTRLDKIRSLMESSNSDTINANEVTGQG
TGNSVGANHLMRPSSSDQLVSQVQHQIKRFGSVDE
Sequence Length:
585
Sequence Checksum:
421d7f63b644ad1a9a1ab8d785f94b09
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017393270.1, derives from mRNA, XM_017393270.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017393270.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017393270.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5B978 (TFIID_20kDa domain-containing protein {ECO:0000259|Pfam:PF03847})
HSP 1 Score: 708.368 bits (1827), Expect = 0.000e+0
Identity = 477/609 (78.33%), Postives = 507/609 (83.25%), Query Frame = 0
Match: A0A6L5B978 (TFIID_20kDa domain-containing protein {ECO:0000259|Pfam:PF03847})
HSP 1 Score: 708.368 bits (1827), Expect = 0.000e+0
Identity = 477/609 (78.33%), Postives = 507/609 (83.25%), Query Frame = 0
Query: 1 MADNPTQSSAKQLQSSNSITMD---PNIIPQQQNQTQITSASNLNNNNNNINSIDLPQLTPSN--QQQQQFNLQQQHSNNNMMGPTSSFQMQRSPSMSRLQQQQQYSLAAAARQQAAVAGIYGQMSFGGNASQQQQNSNNLNNNNQQQQMGQM-------------------GQVGNANLSRSGLMGAQGGNLPMLPAQAAAQLNLQSQLLASPRQKTGLAQAGTQFHPGNSPAQSLQGMQAMGMMGNFNIGSQIRGNGSIAYTQQRLNQGQMRQQLSQQNQLNSTQKLQAQSLGRTSFINPQLSGLAQNGQPALIQNTLSQQQWLKQVPAMSAPNSPSYRLQHQRQQQALLQQQLASSSQMQQNSSALNPQQLSQMVQQQQQQSAGQLQLQQQQQPVPPTQQQILHHQQQSPRMATPAGQKSLSLTGSQPDATASGTTTPGGSSSQGTEASNQLLGKRRIQDLVSQVDPQAKLDPVVEDMLLEIADNFIDSVTSYACSLAKHRNSSTVESKDVLLHLEKNLGLSIPGYSSEERKHQENDSSSHAHKTRLDKIRSLMESSNSDTINANEVTGQGTGNSVGANHLMRPSSSDQLVSQVQHQIKRFGSVDE 585
MADNPTQSSAKQLQSS++ + P +I QQQNQ + N NN+ ++ S PSN QQQQ Q NN+MGPTS++QMQRSPSMSRLQQQQQY+LAAAARQQAAVAGIYGQMSFGG + +NN Q GQVGNANL+RSGLMGAQGGNLPMLP QAAAQLNLQ QLLASPRQKTGLAQAGTQFHPGNSPAQSLQGMQAMGMMGN+NIGSQIRGNGSIAYTQQRLNQGQMRQQLSQQNQL S QKLQAQSLGRTSFINPQLSGLAQNGQPALIQNTLSQQQWLKQ+PAMSAPNSPSYRLQHQRQQQALLQQQLASSSQMQQNS+ALNPQQLSQMVQQQQQQS GQLQLQQQ P QQ + H QQQSPRMATPAGQKSLSLTGSQPDATASGTTTPGGSSSQGTEASNQLLGKRRIQDLV+QVDPQA LDP VE+MLL +ADNFID+VT+YAC+LAKHRNSSTVESKDVLLHLEKNLG++IPGYSSEERK+QENDSSS AHK RLDKIRSLMESS SD NANEVTGQGT NS+GANH MRPS S+ LVSQ QHQIKRFGS DE
Sbjct: 1 MADNPTQSSAKQLQSSDNNINNNNNPILITQQQNQISSSPNINNNNSLASLQS-------PSNTIDQQQQQQFNLQQQQNNLMGPTSNYQMQRSPSMSRLQQQQQYTLAAAARQQAAVAGIYGQMSFGGTNNNNININNNSQQQQQNSISISNTNQQQQMGQQMGQQMGQQMGQVGNANLTRSGLMGAQGGNLPMLPGQAAAQLNLQPQLLASPRQKTGLAQAGTQFHPGNSPAQSLQGMQAMGMMGNYNIGSQIRGNGSIAYTQQRLNQGQMRQQLSQQNQLGSAQKLQAQSLGRTSFINPQLSGLAQNGQPALIQNTLSQQQWLKQMPAMSAPNSPSYRLQHQRQQQALLQQQLASSSQMQQNSTALNPQQLSQMVQQQQQQSVGQLQLQQQPV-PPAQQQILHHQQQQSPRMATPAGQKSLSLTGSQPDATASGTTTPGGSSSQGTEASNQLLGKRRIQDLVAQVDPQAVLDPEVEEMLLMLADNFIDTVTTYACTLAKHRNSSTVESKDVLLHLEKNLGMNIPGYSSEERKNQENDSSSQAHKIRLDKIRSLMESSTSDANNANEVTGQGTSNSMGANHQMRPSGSE-LVSQPQHQIKRFGSADE 600
BLAST of XM_017393270.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7FY35 (TFIID_20kDa domain-containing protein {ECO:0000259|Pfam:PF03847})
HSP 1 Score: 522.702 bits (1345), Expect = 3.528e-177
Identity = 350/554 (63.18%), Postives = 394/554 (71.12%), Query Frame = 0
Match: A0A7J7FY35 (TFIID_20kDa domain-containing protein {ECO:0000259|Pfam:PF03847})
HSP 1 Score: 522.702 bits (1345), Expect = 3.528e-177
Identity = 350/554 (63.18%), Postives = 394/554 (71.12%), Query Frame = 0
Query: 76 NMMGPTSSFQ----MQRSPSMSRLQQQQQYSLA-------AAARQQAAVAGIYGQ-MSFGGNASQQQQNSNNLNNNNQQQQMGQMGQVGNANLSRSGLMGAQGGNLPMLPAQAAAQLNLQSQLLASPRQKTGLAQAGTQFHPGNSPAQSLQGMQAMGMMGNFNIGSQIRGNGSIAYT-QQRLNQGQMRQQLSQQNQLNSTQ---------------KLQAQSLGRTSFINPQLSGLAQNGQPALIQNTLSQQQWLKQVPAMSAPNSPSYRLQHQRQQQALLQQQLASSSQMQQNSSALNPQQLSQMVQQQQ---------QQSAGQLQLQQQQQPVPPTQQQILHHQQQSPRMATPAGQKSLSLTGSQPDATASGTTTPGGSSSQGTEASNQLLGKRRIQDLVSQVDPQAKLDPVVEDMLLEIADNFIDSVTSYACSLAKHRNSSTVESKDVLLHLEKNLGLSIPGYSSEERKHQENDSSSHAHKTRLDKIRSLMESSNSDT--INANEVTGQGTGNSVGANHLMRPS-SSDQLVSQ------VQHQIKRFGSV 583
N+M +S+FQ MQR PS+SRL Q QQ A RQQ GIYGQ M+FGG + QQQ QQQ Q+GN NL RS L+G Q +L MLP+QAA QLNLQSQLLASP QKTG Q G+QFHPG+SP Q LQGMQ MGM G+ N+ SQIR NGS+AY QQR+NQ QMRQQLSQQN L+S+Q KLQAQS RTSFINPQLSGL QNGQ L+Q +LSQQQWLKQ+ AMS+PNSPSYRLQ QRQQQ LL QLASS Q+QQ S +LNPQQ SQ+VQQ Q QQ Q Q Q QQ QQQ L +QQQSPRMA P GQKSLSLTGSQPDATASGTTTPGGSSS GTEASNQLLGKR+IQDLVSQVDP+ KLDP VED+LLEIAD+FIDSVT++ACSLAKHRNSS VE+KDVLLHLEKNL L+IPG+SSEERK+Q+N SS+ HK RLD I S+ME S S+T N EV QG N VG NHL+RPS SSDQL SQ +Q QI R ++
Sbjct: 89 NLMD-SSNFQIQQSMQRLPSISRLNQMQQQQQQQQQQQSYGAMRQQQ---GIYGQQMNFGGGSISQQQQQQQQQQQQQQQNQ----QMGNGNLGRSALIG-QTSHLSMLPSQAA-QLNLQSQLLASPGQKTGFVQ-GSQFHPGSSPGQPLQGMQGMGM-GSLNLSSQIRANGSLAYAPQQRINQVQMRQQLSQQNPLSSSQIMVIKIAIRSYDLELKLQAQSQLRTSFINPQLSGLTQNGQAGLMQGSLSQQQWLKQMSAMSSPNSPSYRLQSQRQQQVLLHNQLASSPQLQQTSMSLNPQQFSQLVQQHQSILHPQLHQQQQQPQPQPQPHQQQHHHLQQQQLLNQQQSPRMAVPPGQKSLSLTGSQPDATASGTTTPGGSSSLGTEASNQLLGKRKIQDLVSQVDPRGKLDPEVEDLLLEIADDFIDSVTTFACSLAKHRNSSIVEAKDVLLHLEKNLHLTIPGFSSEERKNQQNHSSTDLHKKRLDMIHSVMEPSQSETNVNNGKEVARQGLINPVGTNHLIRPSPSSDQLDSQSNASQMLQQQITRCWAI 630
BLAST of XM_017393270.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PV16 ((Transcription initiation factor TFIID subunit 12b like {ECO:0000313|EMBL:PSR96941.1}))
HSP 1 Score: 486.878 bits (1252), Expect = 8.033e-164
Identity = 328/514 (63.81%), Postives = 374/514 (72.76%), Query Frame = 0
Match: A0A2R6PV16 ((Transcription initiation factor TFIID subunit 12b like {ECO:0000313|EMBL:PSR96941.1}))
HSP 1 Score: 486.878 bits (1252), Expect = 8.033e-164
Identity = 328/514 (63.81%), Postives = 374/514 (72.76%), Query Frame = 0
Query: 86 MQRSPSMSRL---QQQQQYSLAAAARQQAAVAGIYGQMSFGGNASQQQQNSNNLNNNNQQQQMGQMGQVGNANLSRSGLMGAQGGNLPMLPAQAAAQLNLQSQLLASPRQKTGLAQAGTQFHPGNSPAQSLQGMQAMGMMGNFNIGSQIRGNGSIAYTQQ-RLNQGQMRQQLSQQNQLNSTQKLQAQSLGRTSFINPQLSGLAQNGQPALIQNTLSQQQWLKQVPAMSAPNSPSYRLQHQRQQQALLQQQL-ASSSQMQQNSSALNPQQLSQMVQQQQQQSAGQLQLQQQQQPVPPTQQQILHHQQQ------SPRMATPAGQKSLSLTGSQPDATASGTTTPGGSSSQGTEASNQLLGKRRIQDLVSQVDPQAKLDPVVEDMLLEIADNFIDSVTSYACSLAKHRNSSTVESKDVLLHLEKNLGLSIPGYSSEERKHQENDSSSHAHKTRLDKIRSLMESSNSDT--INANEVTGQGTGNSVGANHLMRPS-SSDQL-----VSQVQHQIKRF 580
+QR+PSMSRL QQQQQ+ +AA + G+YGQM+FG QQQ NL RS L+G Q G+LPML QAA Q NLQSQLL SPR K GL Q G+ F PGNSP QSLQG+QAMGMMG N+ SQIR NGS+AY QQ R+NQGQMRQQLSQQ L +TQKLQ+Q+L RTSF+NPQLSG+AQN QPA+ N+L+QQQWLK PAMSAPNSPSYRLQ Q+Q+Q + Q ASS Q+QQNS ALNPQQLSQ+VQQQQ S Q LQQQQQ QQ QQ SPRMA P GQK+LSLTGSQPDATASGTTTPGGSSS GTEASNQLLGKR+IQDLVSQVD Q KLDP VED+LLEIAD+FIDSVT++ACSLAKHR SST+ESKDVLLHLEKN L+IPG+SSEERK+Q+N SS HK RLD IR+L+E SNS+T N EV G N VG+NHL+RPS SSDQL SQ+ Q+ +F
Sbjct: 119 LQRTPSMSRLNHMQQQQQFGVAAGGAMRQQTVGMYGQMNFGQQQQNQQQQMGG-----------------GGNLGRSTLLG-QTGHLPMLSGQAA-QFNLQSQLLTSPRHKAGLVQ-GSHFLPGNSPGQSLQGIQAMGMMGALNMSSQIRANGSLAYAQQQRMNQGQMRQQLSQQTSLTTTQKLQSQNLPRTSFMNPQLSGMAQNVQPAM--NSLTQQQWLKNTPAMSAPNSPSYRLQQQQQRQQQVLQHQLASSPQLQQNSMALNPQQLSQLVQQQQPYSQQQQLLQQQQQQQQQQQQPSPPSQQLLNQQQQSPRMAVPTGQKTLSLTGSQPDATASGTTTPGGSSSLGTEASNQLLGKRKIQDLVSQVDSQGKLDPEVEDLLLEIADDFIDSVTTFACSLAKHRKSSTLESKDVLLHLEKNWRLTIPGFSSEERKYQQNYPSSDLHKKRLDVIRALIEPSNSETNMSNGKEVPRHGLINPVGSNHLIRPSPSSDQLASQSNASQMLQQVTKF 610
BLAST of XM_017393270.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0GBQ6 ((Transcription initiation factor TFIID subunit A {ECO:0000313|EMBL:GFZ08128.1}))
HSP 1 Score: 479.174 bits (1232), Expect = 7.363e-161
Identity = 333/503 (66.20%), Postives = 379/503 (75.35%), Query Frame = 0
Match: A0A7J0GBQ6 ((Transcription initiation factor TFIID subunit A {ECO:0000313|EMBL:GFZ08128.1}))
HSP 1 Score: 479.174 bits (1232), Expect = 7.363e-161
Identity = 333/503 (66.20%), Postives = 379/503 (75.35%), Query Frame = 0
Query: 86 MQRSPSMSRL---QQQQQYSLAAAA---RQQAAVAGIYGQMSFGGNASQQQQNSNNLNNNNQQQQMGQMGQVGNANLSRSGLMGAQGGNLPMLPAQAAAQLNLQSQLLASPRQKTGLAQAGTQFHPGNSPAQSLQGMQAMGMMGNFNIGSQIRGNGSIAYTQQRLNQGQMRQQLSQQNQLNSTQKLQAQSLGRTSFINPQLSGLAQNGQPALIQNTLSQQQWLKQVPAMSAPNSPSYRLQHQRQQQALLQQQLA--SSSQMQQNSSALNPQQLSQ--------MVQQQQQQSAGQLQLQQQQQPVPPTQQQILHHQQQSPRMATPAGQKSLSLTGSQPDATASGTTTPGGSSSQGTEASNQLLGKRRIQDLVSQVDPQAKLDPVVEDMLLEIADNFIDSVTSYACSLAKHRNSSTVESKDVLLHLEKNLGLSIPGYSSEERKHQENDSSSHAHKTRLDKIRSLMESSNSDT--INANEVTGQGTGNSVGANHLMRPS-SSDQL 569
+QR+PSMSRL QQQQQY +AA A RQQ G+YGQM+FG QQQQN Q+G ANL+RS L+G Q G+LPML QAA Q NLQSQLLASPRQK GL Q G+ F PGNSP QSLQG+QAMGMMG N+ SQIR NG +AY QQR+NQGQMRQQLSQQ L +TQKLQ+Q+L RTSF+NPQLSG+AQNGQPA+ N+L+QQQWLK AMSAPNSPSYRLQ Q+Q+Q Q SS Q+Q NS ALNPQQLSQ + Q QQ Q Q QQQQQ P QQ+L+ QQQSPRMA PAGQKSLSLTGSQPDATASGTTTPGGSSS GTEASNQLLGKR+IQDLVSQVD Q KLDP VED+LLEIAD+FIDSVT++ACSLAKHR SST+ESKDVLLHLEKN L+IPG+SSEERK+Q+N SS HK RLD IR+L+E SNS+T N+ E+ G N VG+NHL++PS SSDQL
Sbjct: 119 LQRTPSMSRLNQMQQQQQYGVAAGAGVMRQQ--TVGMYGQMNFGQQQQQQQQNQQQ--------------QMGGANLARSALIG-QTGHLPMLSGQAA-QFNLQSQLLASPRQKAGLVQ-GSHFLPGNSPGQSLQGIQAMGMMGALNMSSQIRANGPLAYAQQRMNQGQMRQQLSQQTSLTATQKLQSQNLPRTSFMNPQLSGMAQNGQPAM--NSLTQQQWLKNTSAMSAPNSPSYRLQQQQQRQQQALLQHQLASSPQLQPNSMALNPQQLSQLVQQQQTIVHPQLLQQQQQQQQQQQQQQQPSPPSQQLLNQQQQSPRMAVPAGQKSLSLTGSQPDATASGTTTPGGSSSLGTEASNQLLGKRKIQDLVSQVDSQGKLDPEVEDLLLEIADDFIDSVTTFACSLAKHRKSSTLESKDVLLHLEKNWRLTIPGFSSEERKYQQNYPSSDLHKKRLDLIRALIEPSNSETNMNNSKELPRHGLINPVGSNHLIKPSPSSDQL 600
BLAST of XM_017393270.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4V6RYA5 (TFIID_20kDa domain-containing protein {ECO:0000259|Pfam:PF03847})
HSP 1 Score: 452.595 bits (1163), Expect = 2.996e-153
Identity = 274/411 (66.67%), Postives = 304/411 (73.97%), Query Frame = 0
Match: A0A4V6RYA5 (TFIID_20kDa domain-containing protein {ECO:0000259|Pfam:PF03847})
HSP 1 Score: 452.595 bits (1163), Expect = 2.996e-153
Identity = 274/411 (66.67%), Postives = 304/411 (73.97%), Query Frame = 0
Query: 190 PRQKTGLAQAGTQFHPGNSPAQSLQGMQAMGMMGNFNIGSQIRGNGSIAYT-QQRLNQGQMRQQLSQQNQLNSTQKLQAQSLGRTSFINPQLSGLAQNGQPALIQNTLSQQQWLKQVPAMSAPNSPSYRLQHQRQQQALLQQQLASSSQMQQNSSALNPQQLSQMVQQQQ-----------QQSAGQLQLQQQQQPVPPTQQQILHHQQQSPRMATPAGQKSLSLTGSQPDATASGTTTPGGSSSQGTEASNQLLGKRRIQDLVSQVDPQAKLDPVVEDMLLEIADNFIDSVTSYACSLAKHRNSSTVESKDVLLHLEKNLGLSIPGYSSEERKHQENDSSSHAHKTRLDKIRSLMESSNSDT--INANEVTGQGTGNSVGANHLMRPS-SSDQLVSQ------VQHQIKR 579
P QKTG Q G+QFHPG+SP Q LQGMQ MGM G+ N+ SQIR NGS+AY QQR+NQ KLQAQS RTSFINPQLSGL QNGQ L+Q +LSQQQWLKQ+ AMS+PNSPSYRLQ QRQQQ LL QLASS Q+QQ S +LNPQQ SQ+VQQ Q QQ Q Q Q QQ QQQ L +QQQSPRMA P GQKSLSLTGSQPDATASGTTTPGGSSS GTEASNQLLGKR+IQDLVSQVDP+ KLDP VED+LLEIAD+FIDSVT++ACSLAKHRNSS VE+KDVLLHLEKNL L+IPG+SSEERK+Q+N SS+ HK RLD I S+ME S S+T N EV QG N VG NHL+RPS SSDQL SQ +Q QI R
Sbjct: 16 PGQKTGFVQ-GSQFHPGSSPGQPLQGMQGMGM-GSLNLSSQIRANGSLAYAPQQRINQ-----------------KLQAQSQLRTSFINPQLSGLTQNGQAGLMQGSLSQQQWLKQMSAMSSPNSPSYRLQSQRQQQVLLHNQLASSPQLQQTSMSLNPQQFSQLVQQHQSILHPQLHQQQQQPQPQPQPQPHQQQHHHLQQQQLLNQQQSPRMAVPPGQKSLSLTGSQPDATASGTTTPGGSSSLGTEASNQLLGKRKIQDLVSQVDPRGKLDPEVEDLLLEIADDFIDSVTTFACSLAKHRNSSIVEAKDVLLHLEKNLHLTIPGFSSEERKNQQNHSSTDLHKKRLDMIHSVMEPSQSETNVNNGKEVARQGLINPVGTNHLIRPSPSSDQLDSQSNASQMLQQQITR 407
BLAST of XM_017393270.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A836XUH0 ((Transcription initiation factor IID family protein {ECO:0000313|EMBL:KAG5229018.1}))
HSP 1 Score: 458.759 bits (1179), Expect = 4.768e-153
Identity = 306/535 (57.20%), Postives = 368/535 (68.79%), Query Frame = 0
Match: A0A836XUH0 ((Transcription initiation factor IID family protein {ECO:0000313|EMBL:KAG5229018.1}))
HSP 1 Score: 458.759 bits (1179), Expect = 4.768e-153
Identity = 306/535 (57.20%), Postives = 368/535 (68.79%), Query Frame = 0
Query: 69 QQQHSNNNMMGPTSSFQMQRSPSMSRL-----QQQQQYS-LAAAARQQAAVAGIYGQMSFGGNASQQQQNSNNLNNNNQQQQMGQMGQVGNANLSRSGLMGAQGGNLPMLPAQAAAQLNLQSQLLASPRQKTGLAQAGTQFHPGNSPAQSLQGMQAMGMMGNFNIGSQIRGNGSIAYTQQRLNQGQMRQQLSQQNQLNSTQKLQAQSLGRTS---FINPQLSGLAQNGQPALIQNTLSQQQWLKQVPAMSAPNSPSYRLQHQRQQQALLQQQLASSSQMQQNSSALNPQQLSQMVQQQQQQSAGQLQLQQQQQP-----VP-PTQQQILHHQQQSPRMATPAGQKSLSLTGSQPDATASGTTTPGGSSSQGTEASNQLLGKRRIQDLVSQVDPQAKLDPVVEDMLLEIADNFIDSVTSYACSLAKHRNSSTVESKDVLLHLEKNLGLSIPGYSSEERKHQENDSSSHAHKTRLDKIRSLMESSNSDT--INANEVTGQGTGNSVGANHLMRPS-SSDQLV-----SQVQHQIKRF 580
QQQ + M G + + RSP MSRL QQ QY + +QQ G+YGQM+FGG+AS Q N+QQ Q Q+G ANLS S L+G Q G L + A AAAQLNL SQLLASPRQKTGL Q G+QF+PGNSP QSLQG+QAMG+MG+ N+GSQ++ NG++ Y QQR++ G RQQL QQN L S Q QSL RTS ++NPQ+SGL QN Q ++ N+LS QQWLKQ+P MS P SPS+ LQ QRQ QAL+QQQLASS Q+ QN A QL Q Q Q Q + QQQ VP QQQ HHQQQSPRM P QKSLSLTGS PDATASGTTTPGGSSSQGTEA+NQLLGKR+IQDLVSQVD KLDP VE+ LLEIAD+FIDS +++CSLAKHR SST+ESKD++LHLEKN L IPG+S+EE+KHQ+ + + H+ RLD IR+LMESS+S+ IN+ E+ QG N V NHL+RPS SS+Q+V S + +I RF
Sbjct: 73 QQQQNVTAMSGYPNQQTLHRSP-MSRLSQINQQQPNQYGGVLRQQQQQQQQQGLYGQMNFGGSASIQP--------NSQQNQ-----QLGGANLSHSALLG-QTGQLMLTGAAAAAQLNLPSQLLASPRQKTGLVQ-GSQFNPGNSPGQSLQGIQAMGVMGSLNMGSQLKPNGALTYAQQRIHPGSTRQQLVQQNPLTS----QVQSLQRTSSMAYMNPQMSGLVQNAQQNMMHNSLSHQQWLKQMPTMSGPASPSFHLQ-QRQSQALIQQQLASSGQLHQNLMAQQLSQLVQQQPQMGHQQLHQQKQQQQILQQRLQQVPLHHQQQQQHHQQQSPRMLGPTCQKSLSLTGSHPDATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSHGKLDPEVEECLLEIADHFIDSAITFSCSLAKHRKSSTLESKDIMLHLEKNWHLIIPGFSTEEQKHQKRPLACNLHRQRLDMIRALMESSHSEENNINSKEMLRQGLDNPVVTNHLIRPSPSSEQMVLQSTGSPMVQRITRF 586
BLAST of XM_017393270.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5WHJ5 ((transcription initiation factor TFIID subunit 12b-like {ECO:0000313|RefSeq:XP_022715267.1}))
HSP 1 Score: 456.447 bits (1173), Expect = 3.320e-151
Identity = 316/502 (62.95%), Postives = 363/502 (72.31%), Query Frame = 0
Match: A0A6P5WHJ5 ((transcription initiation factor TFIID subunit 12b-like {ECO:0000313|RefSeq:XP_022715267.1}))
HSP 1 Score: 456.447 bits (1173), Expect = 3.320e-151
Identity = 316/502 (62.95%), Postives = 363/502 (72.31%), Query Frame = 0
Query: 104 AAAARQQAAVAGIYGQMSFGGNASQQQQNSNNLNNNNQQQQMGQMGQVGNANLSRSGLMGAQGGNLPML--PAQAAAQLNLQSQLLASPRQKTGLAQAGTQFHPGNSPAQSLQGMQAMGMMGNFNIGSQIRGNGSIAYTQQRLNQGQMRQQLSQQNQLNSTQKLQAQSLGRTS---FINPQLSGLAQNGQPALIQNTLSQQQWLKQVPAMSAPNSPSYRLQHQRQQQALLQQQLASSS-QMQQNSSALNPQQLSQMVQQQQQ---------QSAGQLQLQQQQQPVPPTQQQILHH--QQQSPRMATPAGQKSLSLTGSQPDATASGTTTPGGSSSQGTEASNQLLGKRRIQDLVSQVDPQAKLDPVVEDMLLEIADNFIDSVTSYACSLAKHRNSSTVESKDVLLHLEKNLGLSIPGYSSEERKHQENDSSSHAHKTRLDKIRSLMESSNSDTINAN---EVTGQGTGNSVGANHLMRPSSSDQLV-----SQVQHQIKRF 580
A RQQA G YGQM+FGG+AS Q N N Q+GN N+SRS L+G Q G+LPML A A AQ +LQSQLL+SPRQK GL Q G+QFHPGN QSLQGMQAMGMM N+ SQ+R G++ Y QQR+NQGQMR QL+QQ QL S Q QSL RTS FINPQLSGL QNGQP ++QN++ QQQWLKQ+P++S+P SPS+RLQ RQ LLQ QLA+SS Q+ QN+ LNPQQLSQ+VQQQ Q Q Q QLQQQ Q QQ LH QQQSPRM PAGQK+LS TGSQPDATASGTTTPGGSSSQGTEA+NQLLGKR+IQDLVSQVD Q KL+P VED+LLEIAD+FIDSVT++ACSLAKHR SST+ESKD+LLHLEKN L+IPG+S EE ++Q SS HK RLD IR+LMESS +T NAN E QG GN VGANHLMRPSSS+QLV SQ+ QI R+
Sbjct: 187 ANVLRQQA---GFYGQMNFGGSASIQTNQQQNQQNQ----------QMGNPNISRSALIG-QSGHLPMLSGAAAATAQFSLQSQLLSSPRQKAGLVQ-GSQFHPGNPSGQSLQGMQAMGMM---NLNSQLRATGAL-YAQQRINQGQMRLQLAQQTQLTSPQ---VQSLPRTSSQAFINPQLSGLGQNGQPGMMQNSILQQQWLKQMPSISSPGSPSFRLQ--RQSPGLLQHQLAASSPQLHQNAMGLNPQQLSQLVQQQSQIGHPQMQQPQQHQQQQLQQQPQQQLQPQQSPLHQPQQQQSPRMPGPAGQKTLSFTGSQPDATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQGKLEPEVEDLLLEIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFSREE-QNQTRPLSSDLHKKRLDMIRALMESSQPET-NANNPKETIRQGLGNPVGANHLMRPSSSEQLVSQAAGSQMLQQITRY 662
BLAST of XM_017393270.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4CJ73 ((transcription initiation factor TFIID subunit 12b-like isoform X1 {ECO:0000313|RefSeq:XP_016501260.1}))
HSP 1 Score: 455.677 bits (1171), Expect = 5.143e-151
Identity = 325/543 (59.85%), Postives = 383/543 (70.53%), Query Frame = 0
Match: A0A1S4CJ73 ((transcription initiation factor TFIID subunit 12b-like isoform X1 {ECO:0000313|RefSeq:XP_016501260.1}))
HSP 1 Score: 455.677 bits (1171), Expect = 5.143e-151
Identity = 325/543 (59.85%), Postives = 383/543 (70.53%), Query Frame = 0
Query: 77 MMGPTSSFQMQRSPSMSRLQQQQQYSLAAAA---RQQAAVAGIYGQMSFGGNASQQQQNSNNLNNNNQQQQMGQM------------------------GQVGNANLSRSGLMGAQGGNLPMLPAQAAA---QLNLQSQLLASPRQKTGLAQAGTQFHPGNSPAQSLQGMQAMGMMGNFNIGSQIRGNGSIAYTQQRLNQGQMRQQLSQQNQLNSTQKLQAQSLGRTSFINPQLSGLAQNGQPALIQNTLSQQQWLKQVPAMSAPNSPSYRLQ-HQRQQQALLQQQLASSSQMQQNSSALNPQQLSQMVQQQQQQSAGQLQLQQQQQPVPPTQQQILHHQQQSPRMATPAGQKSLSLTGSQPDATASGTTTPGGSSSQGTEASNQLLGKRRIQDLVSQVDPQAKLDPVVEDMLLEIADNFIDSVTSYACSLAKHRNSSTVESKDVLLHLEKNLGLSIPGYSSEERKHQENDSSSHAHKTRLDKIRSLMESSNSDT---INANEVTGQGTGNSVGANHLMRPSSSDQLV-----SQVQHQIKRF 580
+M S+FQMQRSPSMSRL Q Q RQQ+ G+YGQM+FG + QQ QQQQ Q+ GQ+G+ NL+R+ LMG Q G+LPML QAAA Q NLQSQ L PRQK GL Q G QFH GNS QSLQG+QAMGMMG+ N+ SQ+R NG++AY QQR+NQ Q+RQQLSQQN L + QK+ Q+L RTSFINPQL GL QNGQ ++QN SQQQWLKQ+PA+S+PNSPSYRLQ ++QQ L+QQQL SS Q+ QN LNPQQLSQ+VQQQQQ Q+ QQQQQ QQ+LH QQ SPRMA PAGQKSLSLTGSQPDAT SGTTTPGGSSSQGTEASNQLLGKR+IQDLVSQVD KLDP VED+LLEIAD+FIDSVT++AC+LAKHR SST+ESKDVLLHLEKN L+IPG+SSEERKH S S HK RLD IR+LME+S ++T +A E G G+S NH++RP SS++LV SQ+ H++ +F
Sbjct: 114 LMAAASNFQMQRSPSMSRLSQFQMQQQQQQFGLMRQQSGGGGLYGQMNFGSGGTALQQQQLQQQQLQQQQQQQQLQQQQQQQQQQQQQQQNQQQQQQIGGQMGSGNLTRAALMG-QTGHLPMLSGQAAAAVAQFNLQSQFLNPPRQKAGLMQ-GNQFHTGNSHGQSLQGIQAMGMMGSLNMSSQLRANGALAYAQQRVNQNQLRQQLSQQNPLTTAQKISVQNLPRTSFINPQLPGLTQNGQSTIMQNNSSQQQWLKQMPAISSPNSPSYRLQSQRQQQPMLMQQQLTSSQQLHQNLIGLNPQQLSQIVQQQQQIGHPQMHQQQQQQ----QPQQLLHQQQSSPRMAAPAGQKSLSLTGSQPDATGSGTTTPGGSSSQGTEASNQLLGKRKIQDLVSQVDSHGKLDPEVEDLLLEIADDFIDSVTTFACNLAKHRKSSTLESKDVLLHLEKNWHLTIPGFSSEERKHYPEHSPSDLHKKRLDVIRTLMEASQAETSAHTSAKETVRPGVGDS---NHMIRPPSSEKLVSQSNASQMLHEMTKF 647
BLAST of XM_017393270.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YMM1 ((transcription initiation factor TFIID subunit 12b {ECO:0000313|RefSeq:XP_009800090.1}))
HSP 1 Score: 447.973 bits (1151), Expect = 4.316e-148
Identity = 326/543 (60.04%), Postives = 382/543 (70.35%), Query Frame = 0
Match: A0A1U7YMM1 ((transcription initiation factor TFIID subunit 12b {ECO:0000313|RefSeq:XP_009800090.1}))
HSP 1 Score: 447.973 bits (1151), Expect = 4.316e-148
Identity = 326/543 (60.04%), Postives = 382/543 (70.35%), Query Frame = 0
Query: 77 MMGPTSSFQMQRSPSMSRLQQQQQYSLAAAA---RQQAAVAGIYGQMSFGGNASQQQQNSNNLNNNNQQQQMGQM------------------------GQVGNANLSRSGLMGAQGGNLPMLPAQAAA---QLNLQSQLLASPRQKTGLAQAGTQFHPGNSPAQSLQGMQAMGMMGNFNIGSQIRGNGSIAYTQQRLNQGQMRQQLSQQNQLNSTQKLQAQSLGRTSFINPQLSGLAQNGQPALIQNTLSQQQWLKQVPAMSAPNSPSYRLQHQRQQQALLQQQLASSSQM-QQNSSALNPQQLSQMVQQQQQQSAGQLQLQQQQQPVPPTQQQILHHQQQSPRMATPAGQKSLSLTGSQPDATASGTTTPGGSSSQGTEASNQLLGKRRIQDLVSQVDPQAKLDPVVEDMLLEIADNFIDSVTSYACSLAKHRNSSTVESKDVLLHLEKNLGLSIPGYSSEERKHQENDSSSHAHKTRLDKIRSLMESSNSDT---INANEVTGQGTGNSVGANHLMRPSSSDQLV-----SQVQHQIKRF 580
+M S+FQMQRSPSMSRL Q Q RQQ+ G+YGQM+FG + QQ QQQQ Q+ GQ+G+ NL+R+ LMG Q G+LPML QAAA Q NLQSQ L PRQK GL Q G QFH GNS QSLQG+QAMGMMG+ N+ SQ+R NG++AY QQR+NQ Q+RQQLSQQN L + QK+ Q+L RTSFINPQL GL QNGQ ++QN SQQQWLKQ+PA+S+PNSPSYRLQ QRQQQ +L QQ +SSQ QN LNPQQLSQ+VQQQQQ Q+ QQQQQ QQ+LH QQ SPRMA PAGQKSLSLTGSQPDAT SGTTTPGGSSSQGTEASNQLLGKR+IQDLVSQVD KLDP VED+LLEIAD+FIDSVT++AC+LAKHR SST+ESKDVLLHLEKN L+IPG+SSEERKH S S HK RLD IR+LME+S ++T +A E G G+S NH++RP SS++LV SQ+ H++ +F
Sbjct: 114 LMAAASNFQMQRSPSMSRLSQFQMQQQQQQFGLMRQQSGGGGLYGQMNFGSGGTALQQQQLQQQQLQQQQQQQQLQQQQQQQQQQQQQQQNQQQQQQIGGQMGSGNLTRAALMG-QTGHLPMLSGQAAAAVAQFNLQSQFLNPPRQKAGLMQ-GNQFHTGNSHGQSLQGIQAMGMMGSLNMSSQLRANGALAYAQQRVNQNQLRQQLSQQNPLTTAQKISVQNLPRTSFINPQLPGLTQNGQSTIMQNNSSQQQWLKQMPAISSPNSPSYRLQPQRQQQPMLMQQQLTSSQQLHQNLIGLNPQQLSQIVQQQQQIGHPQMHQQQQQQ----QPQQLLHQQQSSPRMAAPAGQKSLSLTGSQPDATGSGTTTPGGSSSQGTEASNQLLGKRKIQDLVSQVDSHGKLDPEVEDLLLEIADDFIDSVTTFACNLAKHRKSSTLESKDVLLHLEKNWHLTIPGFSSEERKHYPEHSPSDLHKKRLDVIRTLMEASQAETSAHTSAKETVRPGVGDS---NHMIRPPSSEKLVSQSNASQMLHEMTKF 647
BLAST of XM_017393270.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3H706 ((Transcription initiation factor TFIID {ECO:0000313|EMBL:OMO66112.1}))
HSP 1 Score: 446.047 bits (1146), Expect = 6.908e-148
Identity = 308/528 (58.33%), Postives = 352/528 (66.67%), Query Frame = 0
Match: A0A1R3H706 ((Transcription initiation factor TFIID {ECO:0000313|EMBL:OMO66112.1}))
HSP 1 Score: 446.047 bits (1146), Expect = 6.908e-148
Identity = 308/528 (58.33%), Postives = 352/528 (66.67%), Query Frame = 0
Query: 86 MQRSPSMSRLQQQQQYSLAA-----------------AARQQAAVAGIYGQMSFGGNASQQQQNSNNLNNNNQQQQMGQMGQVGNANLSRSGLMGAQGGNLPMLPAQAAA---QLNLQSQLLASPRQKTGLAQAGTQFHPGNSPAQSLQGMQAMGMMGNFNIGSQIRGNGSIAYTQQRLNQGQMRQQLSQQNQLNSTQKLQAQSLGRTS---FINPQLSGLAQNGQPALIQNTLSQQQWLKQVPAMSAPNSPSYRLQHQRQQQALLQQQLASSS-QMQQNSSALNPQQLSQMVQQQQQQSAGQLQLQQQQQPVPPTQQQILHHQQQSPRMATPAGQKSLSLTGSQPDATASGTTTPGGSSSQGTEASNQLLGKRRIQDLVSQVDPQAKLDPVVEDMLLEIADNFIDSVTSYACSLAKHRNSSTVESKDVLLHLEKNLGLSIPGYSSEERKHQENDSSSHAHKTRLDKIRSLMESSNSDTINAN---EVTGQGTGNSVGANHLMRPS-SSDQLV-----SQVQHQIKRF 580
+QRSPS+SRL Q QQ RQQA G+YGQM+FGG+AS Q N N Q+GN NLSRSGL+G Q G+LPML AAA Q +LQS +L+SPRQK GL G+QFH GN QSLQGMQAMGMM N+ SQ+R NG++ Y QQR+ GQMRQQLSQQ QL S Q QSL RTS F+NPQLSGLAQNGQ +IQN+L QQQWLKQ+P+MS P SPS+RLQ + QALLQQQLASSS Q+ QN ALNPQQLSQM PAGQKSLSLTGSQPDATASGTTTPGGSSSQGTEA+NQLLGKR+IQDLVSQVD Q KL+P VED+LLEIAD+FIDSVT++ACSLAKHR SST+ESKD+LLHLEKN L+IPG+SSEER +Q SS HK RLD IR+LM+SS + NAN E+ QG GN V ANHLMRPS SS+QLV SQ+ QI R+
Sbjct: 149 LQRSPSISRLNQLQQQQQQQSQQQQQQQQQQQSPYGNVLRQQA---GLYGQMNFGGSASIQANQQQNQQNQ----------QMGNPNLSRSGLIG-QSGHLPMLSGAAAAAAAQFSLQSHILSSPRQKAGLQ--GSQFHAGNPTGQSLQGMQAMGMM---NLSSQLRANGAL-YAQQRMTAGQMRQQLSQQTQLTSPQ---VQSLPRTSSQAFMNPQLSGLAQNGQAGMIQNSLLQQQWLKQMPSMSGPGSPSFRLQ---RSQALLQQQLASSSPQLHQNL-ALNPQQLSQM--------------------------------------PGPAGQKSLSLTGSQPDATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQGKLEPEVEDLLLEIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFSSEER-NQTRPLSSDLHKKRLDMIRALMDSSQPEA-NANHPKEIIRQGIGNPVSANHLMRPSPSSEQLVSQAAGSQMLQQITRY 609
| Match Name | Stats | Description |
|---|---|---|
| A0A6L5B978 | E-Value: 0.000e+0, PID: 78.33 | TFIID_20kDa domain-containing protein {ECO:0000259... [more] |
| A0A7J7FY35 | E-Value: 3.528e-177, PID: 63.18 | TFIID_20kDa domain-containing protein {ECO:0000259... [more] |
| A0A2R6PV16 | E-Value: 8.033e-164, PID: 63.81 | (Transcription initiation factor TFIID subunit 12b... [more] |
| A0A7J0GBQ6 | E-Value: 7.363e-161, PID: 66.20 | (Transcription initiation factor TFIID subunit A {... [more] |
| A0A4V6RYA5 | E-Value: 2.996e-153, PID: 66.67 | TFIID_20kDa domain-containing protein {ECO:0000259... [more] |
| A0A836XUH0 | E-Value: 4.768e-153, PID: 57.20 | (Transcription initiation factor IID family protei... [more] |
| A0A6P5WHJ5 | E-Value: 3.320e-151, PID: 62.95 | (transcription initiation factor TFIID subunit 12b... [more] |
| A0A1S4CJ73 | E-Value: 5.143e-151, PID: 59.85 | (transcription initiation factor TFIID subunit 12b... [more] |
| A0A1U7YMM1 | E-Value: 4.316e-148, PID: 60.04 | (transcription initiation factor TFIID subunit 12b... [more] |
| A0A1R3H706 | E-Value: 6.908e-148, PID: 58.33 | (Transcription initiation factor TFIID {ECO:000031... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |