MQDPSTYSQINLQFPEQEHLKCPRCDSSNTKFCYYNNYNLSQPRHLCKNC
KRYWTKGGTLRNIPVGGGSRKVTKRSSNPKKSTNSKSTQEKQEPLSASAS
VINTKDQDGSLLEIGGTFSSLLEVNNGQFGNMIEGLNASGSPSLQLGDFS
QNQSNSGLGSSLVANPFVEFGNNKDSEGFLGVQHDQDSSSWSGTSGDPDL
AMYTPGSSFSVDKSFNL
| Relationships |
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| The polypeptide, XM_017394256.1, derives from mRNA, XM_017394256.1. |
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A5B6YKS4 ((Putative dof zinc finger protein DOF3.1 {ECO:0000313|EMBL:MPA32318.1}))
HSP 1 Score: 252.292 bits (643), Expect = 5.842e-83
Identity = 133/223 (59.64%), Postives = 167/223 (74.89%), Query Frame = 0
Query: 1 MQDPSTYSQINLQFPEQEHLKCPRCDSSNTKFCYYNNYNLSQPRHLCKNCKRYWTKGGTLRNIPVGGGSRKVTKRSSNPKKSTNSKSTQE------------KQEPLSASASVINTKDQDGSLLEIGGTFSSLLEVNNGQFGNMIEGLNASGSPSLQLGDFSQNQSNSGLGSSLVANPFVEFGNNKDSEGFLGVQHDQDSSSWSGTSGD--PDLAMYTPGSSF 209
MQDPSTY QIN QFPEQEHLKCPRCDS+NTKFCYYNNYNLSQPRH CKNC+RYWTKGG LRNIPVGGGSRK TKR+SNPK++++S S+ K EP + DQD +L+I G+FSSLL +N QFGN ++GLN +GS ++Q+G+F++NQ++S + S+++ NP +E N +SE FLGVQ DSS WSG +G+ PDLA+YTPGS+F
Sbjct: 1 MQDPSTYQQINPQFPEQEHLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRTSNPKRTSSSSSSSSFSSVSSSTKAVPKSEPSGMYGLSASAFDQDRRMLDITGSFSSLL-ASNPQFGNFLDGLNPNGS-AVQVGEFAENQNSSSV-SNMIRNPPMELQNADNSETFLGVQSGGDSSCWSGGNGNGWPDLAIYTPGSTF 220
Match: A0A5B6YL21 ((Putative dof zinc finger protein DOF3.1 {ECO:0000313|EMBL:MPA32319.1}))
HSP 1 Score: 246.899 bits (629), Expect = 5.993e-81
Identity = 132/214 (61.68%), Postives = 159/214 (74.30%), Query Frame = 0
Query: 1 MQDPSTYSQINLQFPEQEHLKCPRCDSSNTKFCYYNNYNLSQPRHLCKNCKRYWTKGGTLRNIPVGGGSRKVTKR---SSNPKKSTNSKSTQE--KQEPLSASASVINTKDQDGSLLEIGGTFSSLLEVNNGQFGNMIEGLNASGSPSLQLGDFSQNQSNSGLGSSLVANPFVEFGNNKDSEGFLGVQHDQDSSSWSGTSGDPDLAMYTPGSSF 209
MQDPSTY QI QFPEQEHLKCPRCDS+NTKFCYYNNYNLSQPRH CKNC+RYWTKGG+LRNIPVGGG+RK TKR S +S +TQ K EP +T DQD +L+I G+FSSLL +NGQFGN ++GLN +GS ++QLG+F++N NS GS+++ NP +E + +SE FLGVQ DSS W G +G PDLA+YTPGSSF
Sbjct: 1 MQDPSTYQQIRPQFPEQEHLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGSLRNIPVGGGTRKNTKRSSNPKRSSSSVSSSTTQAVPKPEPSEMYGLSASTFDQDRGMLDITGSFSSLL-ASNGQFGNFLDGLNPNGS-TVQLGEFAEN-PNSSSGSNMIRNPPMELQSANNSETFLGVQSGGDSSCWGGGNGWPDLAIYTPGSSF 211
Match: A0A2R6QFH2 ((Dof zinc finger protein like {ECO:0000313|EMBL:PSS07364.1}))
HSP 1 Score: 238.81 bits (608), Expect = 5.277e-78
Identity = 127/211 (60.19%), Postives = 155/211 (73.46%), Query Frame = 0
Query: 1 MQDPSTYSQINLQFPEQEHLKCPRCDSSNTKFCYYNNYNLSQPRHLCKNCKRYWTKGGTLRNIPVGGGSRKVTKRSSNPKKSTNSKSTQEKQEPLSASASVINTKDQDGSLLEIGGTFSSLLEVNNGQFGNMIEGLNASGSPSLQLGDFSQNQSNSGLGSSLVANPFVEFGNNKDSEGFLGVQHDQDSSSWSGTSGD--PDLAMYTPGSSF 209
MQDPSTY QI QFPE EHLKCPRCDS+NTKFCYYNNYNLSQPRH CKNC+RYWTKGG LRNIPVGGGSRK TKRSSNPK+ T K +P A S + DQD +L+ GG+FSSLL NGQFGN++EGLN +GS + QLG+F +N +L NP +E +++++E FLGV++ DSS W G G+ P+L++YTPGS+F
Sbjct: 1 MQDPSTYQQIQPQFPEHEHLKCPRCDSTNTKFCYYNNYNLSQPRHYCKNCRRYWTKGGALRNIPVGGGSRKNTKRSSNPKRPT------PKPDPSGAYGSP-SAFDQDRRILDSGGSFSSLL---NGQFGNLLEGLNPNGS-AGQLGEFGEN-------PNLTRNPQIELQSSENAESFLGVENGGDSSCWDGGGGNGWPNLSIYTPGSTF 193
Match: A0A5J5BGD3 (Dof-type domain-containing protein {ECO:0000259|PROSITE:PS50884})
HSP 1 Score: 239.195 bits (609), Expect = 6.258e-78
Identity = 127/214 (59.35%), Postives = 159/214 (74.30%), Query Frame = 0
Query: 1 MQDPSTYSQINLQFPEQEHLKCPRCDSSNTKFCYYNNYNLSQPRHLCKNCKRYWTKGGTLRNIPVGGGSRKVTKRSSNPKK---------STNSKSTQEKQEPLSASASVINTKDQDGSLLEIGGTFSSLLEVNNGQFGNMIEGLNASGSPSLQLGDFSQNQSNSGLGSSLVANPFVEFGNNKDSEGFLGVQHDQDSSSWSGTSGDPDLAMYTP 205
MQDPS Y QI QFP+QEHLKCPRCDSSNTKFCYYNNYNLSQPRH CKNC+RYWTKGG+LRNIPVGGG+RK TKRSSNPK+ S+ S++T K E S + ++ DQD +L++ G+FSSLL +NGQFGN ++GLN +G P+ QLG+F++N NS S+++ NP +E + +SE FLGVQ +SS W G +G PDLA+YTP
Sbjct: 1 MQDPSMYQQIKPQFPDQEHLKCPRCDSSNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGSLRNIPVGGGTRKNTKRSSNPKRLSSSSPSVSSSTSQATIPKSE-HSEMYGLSSSFDQDRGMLDVTGSFSSLL-ASNGQFGNFLDGLNPNG-PTAQLGEFAEN-PNSSSASNMLRNPPIELQSANNSETFLGVQSGGESSCWGGGNGWPDLAIYTP 210
Match: A0A1U8ALW5 ((dof zinc finger protein DOF3.1-like {ECO:0000313|RefSeq:XP_010267036.1}))
HSP 1 Score: 238.424 bits (607), Expect = 1.128e-77
Identity = 127/215 (59.07%), Postives = 158/215 (73.49%), Query Frame = 0
Query: 1 MQDPSTYSQINLQFPEQEHLKCPRCDSSNTKFCYYNNYNLSQPRHLCKNCKRYWTKGGTLRNIPVGGGSRKVTKRSSNPKKSTNSKSTQ----EKQEPLSASASVINTKDQDGSLLEIGGTFSSLLEVNNGQFGNMIEGLN--ASGSPSLQLGDFSQNQSNSGLGSSLVANPFVEFGNNKDSEGFLGVQHDQDSSSWSGTSGDPDLAMYTPGSSF 209
MQDPST+ + FPEQE LKCPRCDS+NTKFCYYNNYNLSQPRH CKNC+RYWTKGG LRNIPVGGGSRK TKRSSNPK+ST+S STQ K EP + + T D D +L+I G+FSSLL +NGQ GN+++GLN +SG+ +LQ G+F++N ++S + +S +E N + E FLG+Q D DSS W +G PDLA+YTPGS+F
Sbjct: 1 MQDPSTFQPVKPHFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRSSNPKRSTSSSSTQNAAVPKPEPTGTFSPPVTTIDHDRRMLDISGSFSSLL-ASNGQMGNLLDGLNPSSSGTRTLQFGEFAENSNSSSIENST-----LELQGNNNQESFLGIQ-DGDSSCWGSGNGWPDLAIYTPGSTF 208
Match: A0A834Z5S2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8400970.1}))
HSP 1 Score: 235.343 bits (599), Expect = 2.229e-76
Identity = 124/217 (57.14%), Postives = 157/217 (72.35%), Query Frame = 0
Query: 1 MQDPSTYSQINLQFPEQEHLKCPRCDSSNTKFCYYNNYNLSQPRHLCKNCKRYWTKGGTLRNIPVGGGSRKVTKRSSNPKKSTNSKSTQEKQ------EPLSASASVINTKDQDGSLLEIGGTFSSLLEVNNGQFGNMIEGLNASGSP--SLQLGDFSQNQSNSGLGSSLVANPFVEFGNNKDSEGFLGVQHDQDSSSWSGTSGDPDLAMYTPGSSF 209
MQDPST+ + FPEQEHLKCPRCDS+NTKFCYYNNYNLSQPRH CKNC+RYWTKGG+LRNIPVGGGSRK +KRSSNPK+S++S S+ Q EP + + DQD +L+I G+FSSLL +NGQFGN++EG+N + S ++Q G+F++N +++ +G NP +E + E FLG Q DSS W G +G PDLA+YTPGSSF
Sbjct: 1 MQDPSTFQTMKPHFPEQEHLKCPRCDSNNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGSLRNIPVGGGSRKNSKRSSNPKRSSSSSSSSSSQNAFPKPEPTGIYSPPVTMIDQDCRMLDISGSFSSLL-ASNGQFGNLLEGMNPNSSSIRTVQFGEFAENSNSNSIG-----NPTLELQRTHNQESFLGPQSG-DSSCWGGGNGWPDLAIYTPGSSF 210
Match: A0A7J0G086 ((DOF zinc finger protein 1 {ECO:0000313|EMBL:GFZ04244.1}))
HSP 1 Score: 233.417 bits (594), Expect = 7.304e-76
Identity = 125/211 (59.24%), Postives = 154/211 (72.99%), Query Frame = 0
Query: 1 MQDPSTYSQINLQFPEQEHLKCPRCDSSNTKFCYYNNYNLSQPRHLCKNCKRYWTKGGTLRNIPVGGGSRKVTKRSSNPKKSTNSKSTQEKQEPLSASASVINTKDQDGSLLEIGGTFSSLLEVNNGQFGNMIEGLNASGSPSLQLGDFSQNQSNSGLGSSLVANPFVEFGNNKDSEGFLGVQHDQDSSSWSGTSGD--PDLAMYTPGSSF 209
MQDPSTY QI QFPE EHLKCPRC+S+NTKFCYYNNYNLSQPRH CKNC+RYWTKGG LRNIPVGGGSRK TKRSSNPK+ T K +P S + DQD +L+ GG+FSSLL NGQFGN++EGLN +GS + QLG+F +N +L NP +E +++++E FLGV++ DSS W G G+ P+L++YTPGS+F
Sbjct: 1 MQDPSTYQQIQPQFPEHEHLKCPRCNSTNTKFCYYNNYNLSQPRHYCKNCRRYWTKGGALRNIPVGGGSRKNTKRSSNPKRPT------PKPDP-SGEYGSHSGFDQDRRILDSGGSFSSLL---NGQFGNLLEGLNPNGS-AGQLGEFGEN-------PNLTRNPQMELQSSENAESFLGVENGGDSSCWDGGGGNGWPNLSIYTPGSTF 193
Match: A0A822ZVM6 ((Uncharacterized protein {ECO:0000313|EMBL:DAD48937.1}))
HSP 1 Score: 234.958 bits (598), Expect = 8.993e-76
Identity = 126/213 (59.15%), Postives = 156/213 (73.24%), Query Frame = 0
Query: 1 MQDPSTYSQINLQFPEQEHLKCPRCDSSNTKFCYYNNYNLSQPRHLCKNCKRYWTKGGTLRNIPVGGGSRKVTKRSSNPKKSTNSKSTQ----EKQEPLSASASVINTKDQDGSLLEIGGTFSSLLEVNNGQFGNMIEGLN--ASGSPSLQLGDFSQNQSNSGLGSSLVANPFVEFGNNKDSEGFLGVQHDQDSSSWSGTSGDPDLAMYTPGS 207
MQDPST+ + FPEQE LKCPRCDS+NTKFCYYNNYNLSQPRH CKNC+RYWTKGG LRNIPVGGGSRK TKRSSNPK+ST+S STQ K EP + + T D D +L+I G+FSSLL +NGQ GN+++GLN +SG+ +LQ G+F++N ++S + +S +E N + E FLG+Q D DSS W +G PDLA+YTPGS
Sbjct: 1 MQDPSTFQPVKPHFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRSSNPKRSTSSSSTQNAAVPKPEPTGTFSPPVTTIDHDRRMLDISGSFSSLL-ASNGQMGNLLDGLNPSSSGTRTLQFGEFAENSNSSSIENST-----LELQGNNNQESFLGIQ-DGDSSCWGSGNGWPDLAIYTPGS 206
Match: A0A200QMT7 ((Zinc finger protein {ECO:0000313|EMBL:OVA11764.1}))
HSP 1 Score: 232.646 bits (592), Expect = 2.780e-75
Identity = 124/219 (56.62%), Postives = 155/219 (70.78%), Query Frame = 0
Query: 1 MQDPSTYSQINLQFPEQEHLKCPRCDSSNTKFCYYNNYNLSQPRHLCKNCKRYWTKGGTLRNIPVGGGSRKVTKRSSNPKKSTNSKSTQ---EKQEPLSASASVINTKDQDGSLLEIGGTFSSLLEVNNGQFGNMIEGLNASGSPSL-------QLGDFSQNQSNSGLGSSLVANPFVEFGNNKDSEGFLGVQHDQDSSSWSGTSGDPDLAMYTPGSSF 209
MQDP+T+ I FPEQEHLKCPRCDS+NTKFCYYNNYNLSQPRH CKNC+RYWTKGG LRNIPVGGGSRK K+ SNPK+S++S STQ K +P +S I DQD +L+I G+FSSLL +NGQFGN++EGLN G+P++ Q G+F +N N ++NP +E +N + E LG+Q DSS W G G PDL+++TPGS+F
Sbjct: 1 MQDPTTFQPIKPHFPEQEHLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNAKKPSNPKRSSSSSSTQNSVPKPQPTGIYSSAITGMDQDHQMLDISGSFSSLL-ASNGQFGNLLEGLN--GNPNVSSVREVHQFGEFVENSEN-------LSNPTLELQSNGNPETLLGIQ-TGDSSCWGGGHGWPDLSIFTPGSNF 208
Match: A0A1U8A4Z1 ((dof zinc finger protein DOF3.1 {ECO:0000313|RefSeq:XP_010262218.1}))
HSP 1 Score: 232.261 bits (591), Expect = 5.296e-75
Identity = 121/221 (54.75%), Postives = 155/221 (70.14%), Query Frame = 0
Query: 1 MQDPSTYSQINLQFPEQEHLKCPRCDSSNTKFCYYNNYNLSQPRHLCKNCKRYWTKGGTLRNIPVGGGSRKVTKRSSNPKK----------STNSKSTQEKQEPLSASASVINTKDQDGSLLEIGGTFSSLLEVNNGQFGNMIEGLN--ASGSPSLQLGDFSQNQSNSGLGSSLVANPFVEFGNNKDSEGFLGVQHDQDSSSWSGTSGDPDLAMYTPGSSF 209
MQDP T+ + F EQE LKCPRC+S+NTKFCYYNNYNLSQPRH CKNC+RYWTKGG LRNIPVGGGSRK TKRSSNPK+ S+++++ K EP + + T DQD +L+I G+FSSLL +NGQFGN++EGLN +SG+ +LQLG+F++N + S+ + N +E N ++E FL DSS WS +G PDLA+YTPGS+F
Sbjct: 1 MQDPYTFQSLKPHFAEQEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRSSNPKRVLSSSSSSSLSSSTQNAVPKPEPSGIFSLPVTTIDQDRRMLDITGSFSSLL-ASNGQFGNLLEGLNPCSSGARTLQLGEFAENSN-----STSIRNSAIELQANNNAESFLASIQGGDSSCWSSGNGWPDLAIYTPGSTF 215
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6YKS4 | E-Value: 5.842e-83, PID: 59.64 | (Putative dof zinc finger protein DOF3.1 {ECO:0000... [more] |
| A0A5B6YL21 | E-Value: 5.993e-81, PID: 61.68 | (Putative dof zinc finger protein DOF3.1 {ECO:0000... [more] |
| A0A2R6QFH2 | E-Value: 5.277e-78, PID: 60.19 | (Dof zinc finger protein like {ECO:0000313|EMBL:PS... [more] |
| A0A5J5BGD3 | E-Value: 6.258e-78, PID: 59.35 | Dof-type domain-containing protein {ECO:0000259|PR... [more] |
| A0A1U8ALW5 | E-Value: 1.128e-77, PID: 59.07 | (dof zinc finger protein DOF3.1-like {ECO:0000313|... [more] |
| A0A834Z5S2 | E-Value: 2.229e-76, PID: 57.14 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8400... [more] |
| A0A7J0G086 | E-Value: 7.304e-76, PID: 59.24 | (DOF zinc finger protein 1 {ECO:0000313|EMBL:GFZ04... [more] |
| A0A822ZVM6 | E-Value: 8.993e-76, PID: 59.15 | (Uncharacterized protein {ECO:0000313|EMBL:DAD4893... [more] |
| A0A200QMT7 | E-Value: 2.780e-75, PID: 56.62 | (Zinc finger protein {ECO:0000313|EMBL:OVA11764.1}... [more] |
| A0A1U8A4Z1 | E-Value: 5.296e-75, PID: 54.75 | (dof zinc finger protein DOF3.1 {ECO:0000313|RefSe... [more] |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |