Resource Type:
Polypeptide
Name:
XM_017396034.1
Identifier:
XM_017396034.1-protein
Sequence:
MKLSSALSLKIKQMAFSTSFLLWFFVTFSIAFPHSVVDAFVGTYGVNYGR
LADNIPAPESVVTLLKAAKIRNVRIYDSDHSVLQAFKGSGIEIIIGLNNG
LVKDVGASEDRAIAWVKENVEAFVPGTRIRGVAVGNEILGSGDQGLMEAL
LPAVKNVYSALERLNLAKEIEVSSPHSAAVFADSYPPSDGVFKDTVLPYM
RPLLQFFSQIHSPFYMNIYPFLAYISDPVTIDIKYALFKKNKGVYDSKSK
LHYDNMFDAQIDAAYAALDKAGFGKTEVIVSETGWASRGDANEVGASVKN
AKTYNSNLRKKLLKKKGTPARPKTPVKAYVFALFNENLKPGPTSERNFGL
FKADGSTAYDIGFTGLVPSSASSSFISIKGNGLQGLLGSSLSLMIYASCS
VAVLLLMM
Sequence Length:
408
Sequence Checksum:
559749bd66593fa0263c99b6dcced86a
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017396034.1, derives from mRNA, XM_017396034.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017396034.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017396034.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1W0C8 ((1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA:ARBA00020943} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}) (Beta-1,3-endoglucanase {ECO:0000256|ARBA:ARBA00013986}))
HSP 1 Score: 583.178 bits (1502), Expect = 0.000e+0
Identity = 277/391 (70.84%), Postives = 329/391 (84.14%), Query Frame = 0
Match: A0A6A1W0C8 ((1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA:ARBA00020943} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}) (Beta-1,3-endoglucanase {ECO:0000256|ARBA:ARBA00013986}))
HSP 1 Score: 583.178 bits (1502), Expect = 0.000e+0
Identity = 277/391 (70.84%), Postives = 329/391 (84.14%), Query Frame = 0
Query: 17 STSFLLWFFVTFSIAFPHSVVDAFVGTYGVNYGRLADNIPAPESVVTLLKAAKIRNVRIYDSDHSVLQAFKGSGIEIIIGLNNGLVKDVGASEDRAIAWVKENVEAFVPGTRIRGVAVGNEILGSGDQGLMEALLPAVKNVYSALERLNLAKEIEVSSPHSAAVFADSYPPSDGVFKDTVLPYMRPLLQFFSQIHSPFYMNIYPFLAYISDPVTIDIKYALFKKNKGVYDSKSKLHYDNMFDAQIDAAYAALDKAGFGKTEVIVSETGWASRGDANEVGASVKNAKTYNSNLRKKLLKKKGTPARPKTPVKAYVFALFNENLKPGPTSERNFGLFKADGSTAYDIGFTGLVPSSASSSFISIKGNGLQGLLGSSLSLMIYASCSVAVLLLM 407
S F LWF + F P++ AF GTYGVNYGR+ADN+P PESVVTLLKAAKI+N+RIYD+DH+VL AFKGSGIEI+IGL N +KD+ +EDRA+ W+KENV+ F+PGTRIRG+AVGNEILG D L EALLPA KNVY+ALERL+L K +EVSSPHS AVF++S+PPS +FKD VLPYM+PLLQFFS+I+SPFY+N YPFLAY SDP IDI YALF+KN G+YD+K+KLHYDNMFDAQ+DAAYAAL+KAGFGKTEVIVSETGWASRGDA+E GA+ KNA+TYN NLRK+L+KKKGTP RPK+PV+AY+FALFNENLKPGPTSERNFGLFKADGS AYDIGF+GLVPSSA SS +S K G S+ +++ASC+ +LL+
Sbjct: 3 SPPFFLWFLLVFCAIAPNA--QAFTGTYGVNYGRIADNLPPPESVVTLLKAAKIKNIRIYDADHAVLTAFKGSGIEIVIGLGNEFLKDMSVAEDRAMTWIKENVQPFLPGTRIRGIAVGNEILGGTDVDLWEALLPAAKNVYNALERLDLTKVVEVSSPHSEAVFSNSFPPSSCIFKDNVLPYMKPLLQFFSEINSPFYINAYPFLAYKSDPDHIDINYALFQKNPGIYDAKTKLHYDNMFDAQVDAAYAALEKAGFGKTEVIVSETGWASRGDADEGGATEKNARTYNYNLRKRLMKKKGTPYRPKSPVRAYIFALFNENLKPGPTSERNFGLFKADGSIAYDIGFSGLVPSSAVSSLLSFKETG-------SIYTLVFASCTAVLLLIF 384
BLAST of XM_017396034.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YV98 ((Putative glucan endo-1,3-beta-glucosidase 14 isoform X1 {ECO:0000313|EMBL:MPA35549.1}) (3.2.1.39 {ECO:0000313|EMBL:MPA35549.1}))
HSP 1 Score: 575.859 bits (1483), Expect = 0.000e+0
Identity = 280/379 (73.88%), Postives = 324/379 (85.49%), Query Frame = 0
Match: A0A5B6YV98 ((Putative glucan endo-1,3-beta-glucosidase 14 isoform X1 {ECO:0000313|EMBL:MPA35549.1}) (3.2.1.39 {ECO:0000313|EMBL:MPA35549.1}))
HSP 1 Score: 575.859 bits (1483), Expect = 0.000e+0
Identity = 280/379 (73.88%), Postives = 324/379 (85.49%), Query Frame = 0
Query: 30 IAFPHSVVDAFVGTYGVNYGRLADNIPAPESVVTLLKAAKIRNVRIYDSDHSVLQAFKGSGIEIIIGLNNGLVKDVGASEDRAIAWVKENVEAFVPGTRIRGVAVGNEILGSGDQGLMEALLPAVKNVYSALERLNLAKEIEVSSPHSAAVFADSYPPSDGVFKDTVLPYMRPLLQFFSQIHSPFYMNIYPFLAYISDPVTIDIKYALFKKNKGVYDSKSKLHYDNMFDAQIDAAYAALDKAGFGKTEVIVSETGWASRGDANEVGASVKNAKTYNSNLRKKLLKKKGTPARPKTPVKAYVFALFNENLKPGPTSERNFGLFKADGSTAYDIGFTGLVPSSASSSFISIKGNGLQGLLGSSLSLMIYASCSVAVLLLMM 408
+ FP+ V AF GTYGVNYGR+ADNIP PESVVTLLKAAKI+N+RIYD+DH VL AF GSGIEI++GL N +KD+ +EDRA+ WVKENV+ F+P T IRG+AVGNEILG+GD GL EALL AVKNVYSAL+RL LA++++VSSPHS AVFA+SYPPS +FK+T+LPYM+PLLQFFSQI+SPFY+N YPFLAYI+DP IDIKYALF+ N G+YD+K+KLHYDNMFDAQIDAAY AL+KAGF KTEVIVSETGWASRGDANE GA+ KNA+ YN NLRK+L KKKGTP RPK V+AYVFALFNENLKPGPTSERNFGLFKADGS +YDIGFTGLVPSSAS S+K GL+ GSS SL IY +C+ VLL+MM
Sbjct: 13 VTFPN--VLAFTGTYGVNYGRIADNIPEPESVVTLLKAAKIKNIRIYDADHKVLSAFNGSGIEIVVGLGNEFLKDISVNEDRAMDWVKENVQPFLPRTSIRGIAVGNEILGNGDVGLWEALLGAVKNVYSALDRLGLARDVQVSSPHSEAVFANSYPPSACIFKETLLPYMKPLLQFFSQINSPFYINAYPFLAYITDPEHIDIKYALFQSNPGIYDAKTKLHYDNMFDAQIDAAYVALEKAGFDKTEVIVSETGWASRGDANEAGATEKNARAYNYNLRKRLAKKKGTPFRPKVVVRAYVFALFNENLKPGPTSERNFGLFKADGSISYDIGFTGLVPSSAS----SLKDIGLRSWFGSSYSL-IYTTCAAVVLLIMM 384
BLAST of XM_017396034.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251TL02 ((Putative glycoside hydrolase family 17 {ECO:0000313|EMBL:OTG11760.1}))
HSP 1 Score: 569.311 bits (1466), Expect = 0.000e+0
Identity = 278/397 (70.03%), Postives = 326/397 (82.12%), Query Frame = 0
Match: A0A251TL02 ((Putative glycoside hydrolase family 17 {ECO:0000313|EMBL:OTG11760.1}))
HSP 1 Score: 569.311 bits (1466), Expect = 0.000e+0
Identity = 278/397 (70.03%), Postives = 326/397 (82.12%), Query Frame = 0
Query: 14 MAFSTSF---LLWFFVTFSIAFPHSVVDAFVGTYGVNYGRLADNIPAPESVVTLLKAAKIRNVRIYDSDHSVLQAFKGSGIEIIIGLNNGLVKDVGASEDRAIAWVKENVEAFVPGTRIRGVAVGNEILGSGDQGLMEALLPAVKNVYSALERLNLAKEIEVSSPHSAAVFADSYPPSDGVFKDTVLPYMRPLLQFFSQIHSPFYMNIYPFLAYISDPVTIDIKYALFKKNKGVYDSKSKLHYDNMFDAQIDAAYAALDKAGFGKTEVIVSETGWASRGDANEVGASVKNAKTYNSNLRKKLLKKKGTPARPKTPVKAYVFALFNENLKPGPTSERNFGLFKADGSTAYDIGFTGLVPSSASSSFISIKGNGLQGLLGSSLSLMIYASCSVAVLLLM 407
M F S+ ++ F+TFS + AF GTYGVNYGR+ADNIP+PESVVTL+KA KI+N RIYD+DH VL+AFKGSGIEIIIGL NG +KD+ S+DRA+ WVK+NVEAFVPGTRIRG+AVGNE+LG GD L EALLPAVKN+++AL+ L+LA +EVSSPHSA VFA SYPPS G FK+T++PYM+PLL+FFS+I+SPFY+N YPFLAYISDP ID+ YA+FKKNKG+YD +KLHYDNMF+AQIDA YAAL+KAGFGK EVI SETGWASRGD NEVGASV NA+TYN NLRK+LLKKKGTP RPK VKAYVFA+FNENLKPGPTSERNFGLFKADGS AYDIGFTGL PSSA+SSF S+KG G +Y C A++L++
Sbjct: 1 MGFFISYHVSIILVFITFSNVL---IASAFTGTYGVNYGRIADNIPSPESVVTLMKANKIKNTRIYDADHDVLKAFKGSGIEIIIGLPNGFLKDISVSQDRAMDWVKQNVEAFVPGTRIRGIAVGNEVLGGGDPQLWEALLPAVKNIHAALDTLHLADHVEVSSPHSAGVFASSYPPSAGAFKETLMPYMKPLLEFFSKINSPFYINTYPFLAYISDPEHIDLNYAIFKKNKGIYDETTKLHYDNMFEAQIDATYAALEKAGFGKMEVIASETGWASRGDPNEVGASVSNARTYNKNLRKRLLKKKGTPYRPKKVVKAYVFAMFNENLKPGPTSERNFGLFKADGSIAYDIGFTGLKPSSATSSF-SLKGIG-----------SMYLVCIAALILII 382
BLAST of XM_017396034.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7NP56 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4098369.1}))
HSP 1 Score: 559.681 bits (1441), Expect = 0.000e+0
Identity = 269/395 (68.10%), Postives = 320/395 (81.01%), Query Frame = 0
Match: A0A6S7NP56 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4098369.1}))
HSP 1 Score: 559.681 bits (1441), Expect = 0.000e+0
Identity = 269/395 (68.10%), Postives = 320/395 (81.01%), Query Frame = 0
Query: 14 MAFSTSFLLWFFVTFSIAFPHSVVDAFVGTYGVNYGRLADNIPAPESVVTLLKAAKIRNVRIYDSDHSVLQAFKGSGIEIIIGLNNGLVKDVGASEDRAIAWVKENVEAFVPGTRIRGVAVGNEILGSGDQGLMEALLPAVKNVYSALERLNLAKEIEVSSPHSAAVFADSYPPSDGVFKDTVLPYMRPLLQFFSQIHSPFYMNIYPFLAYISDPVTIDIKYALFKKNKGVYDSKSKLHYDNMFDAQIDAAYAALDKAGFGKTEVIVSETGWASRGDANEVGASVKNAKTYNSNLRKKLLKKKGTPARPKTPVKAYVFALFNENLKPGPTSERNFGLFKADGSTAYDIGFTGLVPSSASSSFISIKGNGLQGLLGSSLSLMIYASCSVAVLLLMM 408
M FSTS L +F + + AF GTYGVNYGR+ADNIP+PESVVTL+KAAKI+N RIYD+DH VL+AFKGSGIEIIIGL N ++D+ S+DRA+ WVK NVE FVPGTRIRG+AVGNE+LG DQ L E LLPAVKN+++AL+ L+LA ++EVSSPHSA VFA S+PPS G FK+T++PYM+PLL+FFSQI SPFY+N YPFLAYISDP IDI YA+FKKN G+ D+K+KLHYDNMF+AQIDA YAAL+KAGF K EVIVSETGWAS+GDANE GA++ NA+TYN NLRK+LLKKKGTP RPK VKAYVFA+FNENLKPGPTSERNFGLFKADGS +YDIGFTGLVPSSA+S F S + A+CS A++L+++
Sbjct: 1 MDFSTSSLRFFILVIVAINNVLIASAFTGTYGVNYGRIADNIPSPESVVTLMKAAKIKNTRIYDADHEVLKAFKGSGIEIIIGLGNEFLRDISTSQDRAMDWVKNNVEPFVPGTRIRGIAVGNEVLGGADQELWEVLLPAVKNIHTALDLLHLADDVEVSSPHSAGVFASSFPPSAGAFKETLVPYMKPLLEFFSQIKSPFYINTYPFLAYISDPEHIDINYAIFKKNAGIEDAKTKLHYDNMFEAQIDATYAALEKAGFEKMEVIVSETGWASKGDANEAGATLSNARTYNLNLRKRLLKKKGTPYRPKMVVKAYVFAMFNENLKPGPTSERNFGLFKADGSISYDIGFTGLVPSSATSLF----------------SFKVMAACSTALVLMVL 379
BLAST of XM_017396034.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6LQK4 ((Uncharacterized protein {ECO:0000313|EMBL:KAD2394469.1}))
HSP 1 Score: 558.91 bits (1439), Expect = 0.000e+0
Identity = 271/372 (72.85%), Postives = 317/372 (85.22%), Query Frame = 0
Match: A0A5N6LQK4 ((Uncharacterized protein {ECO:0000313|EMBL:KAD2394469.1}))
HSP 1 Score: 558.91 bits (1439), Expect = 0.000e+0
Identity = 271/372 (72.85%), Postives = 317/372 (85.22%), Query Frame = 0
Query: 36 VVDAFVGTYGVNYGRLADNIPAPESVVTLLKAAKIRNVRIYDSDHSVLQAFKGSGIEIIIGLNNGLVKDVGASEDRAIAWVKENVEAFVPGTRIRGVAVGNEILGSGDQGLMEALLPAVKNVYSALERLNLAKEIEVSSPHSAAVFADSYPPSDGVFKDTVLPYMRPLLQFFSQIHSPFYMNIYPFLAYISDPVTIDIKYALFKKNKGVYDSKSKLHYDNMFDAQIDAAYAALDKAGFGKTEVIVSETGWASRGDANEVGASVKNAKTYNSNLRKKLLKKKGTPARPKTPVKAYVFALFNENLKPGPTSERNFGLFKADGSTAYDIGFTGLVPSSASSSFISIKGNGLQGLLGSSLSLMIYASCSVAVLLLM 407
+ +F GTYGVNYGR+ADNIPAPESVVTL+KAAKI+N RIYD++H VL+AFKGSGIEIIIGL N +KD+ AS+DRA+ WVKENVE FVPGTRIRG+AVGNE+LG GDQ L E LLPAVKNV++AL+ L+LA ++EVSSPHSA VFA S+PPS G FK+T++PYM+PLL+FFS+I+SPFY+N YPFLAYISDP IDI YA F+KN G+YD K+KLHY NMF+AQIDAAYAAL+K+GF K +VIVSETGWASRGD NEVGA+V NA+ YN NLRK+LLKKKGTP RPK VKAYVFA+FNENLKPGPTSERNFGLFKADGS AYDIGFTGLVPSSASS F S KGNGL +YA +VA++L++
Sbjct: 8 IASSFTGTYGVNYGRIADNIPAPESVVTLMKAAKIKNTRIYDANHDVLKAFKGSGIEIIIGLGNEFLKDISASQDRAMDWVKENVEPFVPGTRIRGIAVGNEVLGGGDQELWEVLLPAVKNVHTALDLLHLADDVEVSSPHSAGVFASSFPPSAGAFKETLVPYMKPLLEFFSRINSPFYINTYPFLAYISDPEHIDINYATFRKNPGIYDEKTKLHYYNMFEAQIDAAYAALEKSGFSKMDVIVSETGWASRGDPNEVGATVSNARIYNLNLRKRLLKKKGTPYRPKKVVKAYVFAMFNENLKPGPTSERNFGLFKADGSIAYDIGFTGLVPSSASSLF-SFKGNGL-----------MYAVYAVALVLII 367
BLAST of XM_017396034.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251T118 ((Putative glycoside hydrolase family 17 {ECO:0000313|EMBL:OTG04362.1}))
HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0
Identity = 269/376 (71.54%), Postives = 319/376 (84.84%), Query Frame = 0
Match: A0A251T118 ((Putative glycoside hydrolase family 17 {ECO:0000313|EMBL:OTG04362.1}))
HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0
Identity = 269/376 (71.54%), Postives = 319/376 (84.84%), Query Frame = 0
Query: 20 FLLWFFVTFSIAFPHSVVDAFVGTYGVNYGRLADNIPAPESVVTLLKAAKIRNVRIYDSDHSVLQAFKGSGIEIIIGLNNGLVKDVGASEDRAIAWVKENVEAFVPGTRIRGVAVGNEILGSGDQGLMEALLPAVKNVYSALERLNLAKEIEVSSPHSAAVFADSYPPSDGVFKDTVLPYMRPLLQFFSQIHSPFYMNIYPFLAYISDPVTIDIKYALFKKNKGVYDSKSKLHYDNMFDAQIDAAYAALDKAGFGKTEVIVSETGWASRGDANEVGASVKNAKTYNSNLRKKLLKKKGTPARPKTPVKAYVFALFNENLKPGPTSERNFGLFKADGSTAYDIGFTGLVPSSASSSFISIKGNGLQGLLGSSLSLMI 395
F++ FVTF+ + + AF GTYGVNYGR+ADNIPAPESVVTL+KAAKI+N RIY++DH VL+AFKGSGIEIIIGL N L+K++GAS+DRA+ WVK+NVE FVP TRI GVAVGNE+LG DQGL E LLPAVKN+Y AL+ L+LA ++EVSSPHSA VF S+PPS G FK++++PYM+PLL+FFS+ SPFY+N YPFLAYISDP IDI YALFKKN G+YD K+KLHY NMF+AQ+DA YAAL+KAGFGK EVIVSETGWAS+GD NEVGA+V+NA+TYN NLRK+LLKKKGTP RPK VKAYVFA+FNENLKPGPTSERNFGLFKADGS AYDIGFTGLVPSSA+S F S K G+ +G++ ++I
Sbjct: 10 FIVLLFVTFANVW---IASAFTGTYGVNYGRIADNIPAPESVVTLMKAAKIKNTRIYNADHEVLKAFKGSGIEIIIGLPNELLKEIGASQDRAMDWVKQNVEPFVPATRISGVAVGNEVLGGADQGLWEVLLPAVKNIYHALDLLHLADDVEVSSPHSAGVFGSSFPPSAGAFKESLMPYMKPLLEFFSRTKSPFYINTYPFLAYISDPEHIDINYALFKKNPGIYDEKTKLHYYNMFEAQLDATYAALEKAGFGKMEVIVSETGWASKGDPNEVGATVENARTYNLNLRKRLLKKKGTPYRPKKIVKAYVFAMFNENLKPGPTSERNFGLFKADGSIAYDIGFTGLVPSSATSLF-SFKRYGMMYAVGAAALVLI 381
BLAST of XM_017396034.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1Q3CML2 ((1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA:ARBA00020943} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}) (Beta-1,3-endoglucanase {ECO:0000256|ARBA:ARBA00013986}) (Fragment))
HSP 1 Score: 557.37 bits (1435), Expect = 0.000e+0
Identity = 273/373 (73.19%), Postives = 312/373 (83.65%), Query Frame = 0
Match: A0A1Q3CML2 ((1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA:ARBA00020943} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}) (Beta-1,3-endoglucanase {ECO:0000256|ARBA:ARBA00013986}) (Fragment))
HSP 1 Score: 557.37 bits (1435), Expect = 0.000e+0
Identity = 273/373 (73.19%), Postives = 312/373 (83.65%), Query Frame = 0
Query: 37 VDAFVGTYGVNYGRLADNIPAPESVVTLLKAAKIRNVRIYDSDHSVLQAFKGSGIEIIIGLNNGLVKDVGASEDRAIAWVKENVEAFVPGTRIRGVAVGNEILGSGDQGLMEALLPAVKNVYSALERLNLAKEIEVSSPHSAAVFADSYPPSDGVFKDTVLPYMRPLLQFFSQIHSPFYMNIYPFLAYISDPVTIDIKYALFKKNKGVYDSKSKLHYDNMFDAQIDAAYAALDKAGFGKTEVIVSETGWASRGDANEVGASVKNAKTYNSNLRKKLLKKKGTPARPKTPVKAYVFALFNENLKPGPTSERNFGLFKADGSTAYDIGFTGLVPSSA-SSSFISIKGNGLQGLLGSSLSLMIYASCSVAVLLLMM 408
VDAF GTYGVNYGR+ADN+P PESVVTLLKAAKI+NVRIYD++H VL AFKGSGIEI++GL N L+KD+ EDRA+ WVKENVE F+P T IRG+AVGNEILGS D L E LLPAVKNVYSAL+RLNL K +EVSSPHS VFA+SYPPS VFK+ VL YM+PLLQFFSQI SPFY+N YPFLAY SDP I+I YALF N G+ D+K+ LHYDNMFDAQ+DAAYAAL+KAGF KTEVIVSETGWASRGDANE GA+VKNA+TYN N+RK+L KKGTP RPK VKAYVFALFNENLKPGPTSERN+GLFKADG AYDIGFTGLVPSSA S S S K G +GLLG S +++ +C+ ++LL++M
Sbjct: 101 VDAFTGTYGVNYGRIADNLPPPESVVTLLKAAKIKNVRIYDANHDVLTAFKGSGIEIVVGLGNELLKDISVGEDRALNWVKENVEPFLPRTPIRGIAVGNEILGSTDPELWEVLLPAVKNVYSALDRLNLTKTVEVSSPHSEGVFANSYPPSACVFKEDVLVYMKPLLQFFSQIDSPFYINAYPFLAYKSDPEHININYALFLSNVGLVDTKTNLHYDNMFDAQVDAAYAALEKAGFNKTEVIVSETGWASRGDANEAGATVKNARTYNYNMRKRLAAKKGTPYRPKIAVKAYVFALFNENLKPGPTSERNYGLFKADGGIAYDIGFTGLVPSSAVSQSLHSFKAIGAKGLLGYSYPVLL-ITCAASLLLIVM 472
BLAST of XM_017396034.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6LP19 ((Uncharacterized protein {ECO:0000313|EMBL:KAD2393929.1}))
HSP 1 Score: 555.444 bits (1430), Expect = 0.000e+0
Identity = 267/361 (73.96%), Postives = 312/361 (86.43%), Query Frame = 0
Match: A0A5N6LP19 ((Uncharacterized protein {ECO:0000313|EMBL:KAD2393929.1}))
HSP 1 Score: 555.444 bits (1430), Expect = 0.000e+0
Identity = 267/361 (73.96%), Postives = 312/361 (86.43%), Query Frame = 0
Query: 36 VVDAFVGTYGVNYGRLADNIPAPESVVTLLKAAKIRNVRIYDSDHSVLQAFKGSGIEIIIGLNNGLVKDVGASEDRAIAWVKENVEAFVPGTRIRGVAVGNEILGSGDQGLMEALLPAVKNVYSALERLNLAKEIEVSSPHSAAVFADSYPPSDGVFKDTVLPYMRPLLQFFSQIHSPFYMNIYPFLAYISDPVTIDIKYALFKKNKGVYDSKSKLHYDNMFDAQIDAAYAALDKAGFGKTEVIVSETGWASRGDANEVGASVKNAKTYNSNLRKKLLKKKGTPARPKTPVKAYVFALFNENLKPGPTSERNFGLFKADGSTAYDIGFTGLVPSSASSSFISIKGNGLQ-GLLGSSLSLMI 395
+ +F GTYGVNYGR+ADNIPAPESVVTL+KAAKI+N RIYD++H VL+AFKGSGIEIIIGL N +KD+ S+DRA+ WVK+NVE FVPGTRIRG+AVGNE+LG DQ L E LLPAVKNV++AL+ L+LA ++EVSSPHSA VFA S+PPS G FK+T++PYM+PLL+FFS+I+SPFY+N YPFLAYISDP IDI YA F+KN G+YD K+KLHY NMF+AQIDAAYAAL+K+GFGK +VIVSETGWASRGD NEVGA+V NA+ YN NLRK+LLKKKGTP RPK VKAYVFA+FNENLKPGPTSERNFGLFKADGS AYDIGFTGLVPSSASS F S KGNGL + ++L L+I
Sbjct: 8 IASSFTGTYGVNYGRIADNIPAPESVVTLMKAAKIKNTRIYDANHDVLKAFKGSGIEIIIGLGNEFLKDISTSQDRAMDWVKQNVEPFVPGTRIRGIAVGNEVLGGADQELWEVLLPAVKNVHTALDLLHLADDVEVSSPHSAGVFASSFPPSAGAFKETLVPYMKPLLEFFSRINSPFYINTYPFLAYISDPEHIDINYATFRKNPGIYDEKTKLHYYNMFEAQIDAAYAALEKSGFGKMDVIVSETGWASRGDPNEVGATVSNARIYNLNLRKRLLKKKGTPYRPKKVVKAYVFAMFNENLKPGPTSERNFGLFKADGSIAYDIGFTGLVPSSASSLF-SFKGNGLMYAVYAAALVLII 367
BLAST of XM_017396034.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1NQU0 ((Glycoside hydrolase family 17 {ECO:0000313|EMBL:PWA75838.1}))
HSP 1 Score: 555.444 bits (1430), Expect = 0.000e+0
Identity = 271/397 (68.26%), Postives = 325/397 (81.86%), Query Frame = 0
Match: A0A2U1NQU0 ((Glycoside hydrolase family 17 {ECO:0000313|EMBL:PWA75838.1}))
HSP 1 Score: 555.444 bits (1430), Expect = 0.000e+0
Identity = 271/397 (68.26%), Postives = 325/397 (81.86%), Query Frame = 0
Query: 14 MAFST---SFLLWFFVTFSIAFPHSVVDAFVGTYGVNYGRLADNIPAPESVVTLLKAAKIRNVRIYDSDHSVLQAFKGSGIEIIIGLNNGLVKDVGASEDRAIAWVKENVEAFVPGTRIRGVAVGNEILGSGDQGLMEALLPAVKNVYSALERLNLAKEIEVSSPHSAAVFADSYPPSDGVFKDTVLPYMRPLLQFFSQIHSPFYMNIYPFLAYISDPVTIDIKYALFKKNKGVYDSKSKLHYDNMFDAQIDAAYAALDKAGFGKTEVIVSETGWASRGDANEVGASVKNAKTYNSNLRKKLLKKKGTPARPKTPVKAYVFALFNENLKPGPTSERNFGLFKADGSTAYDIGFTGLVPSSASSSFISIKGNGLQGLLGSSLSLMIYASCSVAVLLLM 407
MAFS ++ F+TF+ + +AF GTYGVNYGR+ADNIP PESVVTL+KA KI+N RIYD+DH VL+AFKGSGIEIIIGL N +K++ AS+DRA+ WVK+NV+ FVPGTRIRG+AVGNE+LG GD L E LLPAVKN+++AL+ L+LA ++EVSSPHSA VFA SYPPS G FK+T++PY++PLL+FF+QI SPFY+N YPFLAYISD IDI YALFKKN G+YD K+KLHYDNMF+AQIDAAY+AL+KAGF K +VIVSETGWAS+GDANE GA+V NAKTYN NLRK+LLKKKGTP RPK VKAYVFA+FNENLKPGPTSERNFGLFKADGS +YDIGFTGL PSSA +S +S+KG + IYA+C AV+L++
Sbjct: 1 MAFSILSRRSIILLFITFTNVL---IANAFTGTYGVNYGRIADNIPPPESVVTLMKANKIKNTRIYDADHDVLKAFKGSGIEIIIGLGNEFIKEISASQDRAMDWVKQNVQPFVPGTRIRGIAVGNEVLGGGDPELWEVLLPAVKNIHNALDLLHLADDVEVSSPHSAGVFASSYPPSAGAFKETLVPYLKPLLEFFTQIKSPFYINTYPFLAYISDSEHIDINYALFKKNPGIYDEKTKLHYDNMFEAQIDAAYSALEKAGFAKMDVIVSETGWASKGDANEPGATVDNAKTYNRNLRKRLLKKKGTPYRPKKVVKAYVFAMFNENLKPGPTSERNFGLFKADGSKSYDIGFTGLKPSSA-TSLLSLKG-----------ARSIYAACVAAVVLII 382
BLAST of XM_017396034.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834CP62 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5466749.1}))
HSP 1 Score: 554.673 bits (1428), Expect = 0.000e+0
Identity = 271/402 (67.41%), Postives = 327/402 (81.34%), Query Frame = 0
Match: A0A834CP62 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5466749.1}))
HSP 1 Score: 554.673 bits (1428), Expect = 0.000e+0
Identity = 271/402 (67.41%), Postives = 327/402 (81.34%), Query Frame = 0
Query: 7 LSLKIKQMAFSTSFLLWFFVTFSIAFPHSVV-DAFVGTYGVNYGRLADNIPAPESVVTLLKAAKIRNVRIYDSDHSVLQAFKGSGIEIIIGLNNGLVKDVGASEDRAIAWVKENVEAFVPGTRIRGVAVGNEILGSGDQGLMEALLPAVKNVYSALERLNLAKEIEVSSPHSAAVFADSYPPSDGVFKDTVLPYMRPLLQFFSQIHSPFYMNIYPFLAYISDPVTIDIKYALFKKNKGVYDSKSKLHYDNMFDAQIDAAYAALDKAGFGKTEVIVSETGWASRGDANEVGASVKNAKTYNSNLRKKLLKKKGTPARPKTPVKAYVFALFNENLKPGPTSERNFGLFKADGSTAYDIGFTGLVPSSASSSFISIKGNGLQGLLGSSLSLMIYASCSVAVLLLM 407
+++ IK M FS SF LW + FSI + + DAF GTYGVNYGR+ADNIP+P+SVVTLLKAAKI+N+RIYD++ VL+AFKGSGIEI++GL N +KD+ EDRA+ W+KENV+ F+PGT IRG+AVGNEILG D L E LLPAVKNVYSAL+RL L K++EVSSPHS AVFA+S+PPS F++ +LP+M+PLLQFFS+ SPFY+N YPFLAY SDP ID+KYALF+ N G+YD+K+KLHY NMFDAQ+DAAYAAL+K GF K EVIVSETGWASRGD NE GA++ NA+TYN NLRKKL KKKGTP RPK VKAY+FALFNENLKPGPTSERNFGLFKADGS +YDIGFTGLVPS+A SS +S K +GSS +L ++ASC+ +LL+
Sbjct: 33 VNMPIKPMKFS-SFFLWSLLIFSITSLNVLTADAFTGTYGVNYGRIADNIPSPQSVVTLLKAAKIKNIRIYDANQDVLKAFKGSGIEIVVGLGNEFLKDISVGEDRAMNWIKENVQPFLPGTPIRGIAVGNEILGGADVELWEVLLPAVKNVYSALDRLGLTKKVEVSSPHSEAVFANSFPPSLCNFREDILPFMKPLLQFFSETGSPFYINAYPFLAYKSDPEHIDLKYALFQSNPGIYDAKTKLHYSNMFDAQVDAAYAALEKVGFHKMEVIVSETGWASRGDDNEAGATLDNARTYNYNLRKKLAKKKGTPYRPKIAVKAYIFALFNENLKPGPTSERNFGLFKADGSISYDIGFTGLVPSAAPSSLLSFKE------IGSSCTL-VFASCAAILLLIF 426
| Match Name | Stats | Description |
|---|---|---|
| A0A6A1W0C8 | E-Value: 0.000e+0, PID: 70.84 | (1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA... [more] |
| A0A5B6YV98 | E-Value: 0.000e+0, PID: 73.88 | (Putative glucan endo-1,3-beta-glucosidase 14 isof... [more] |
| A0A251TL02 | E-Value: 0.000e+0, PID: 70.03 | (Putative glycoside hydrolase family 17 {ECO:00003... [more] |
| A0A6S7NP56 | E-Value: 0.000e+0, PID: 68.10 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4098... [more] |
| A0A5N6LQK4 | E-Value: 0.000e+0, PID: 72.85 | (Uncharacterized protein {ECO:0000313|EMBL:KAD2394... [more] |
| A0A251T118 | E-Value: 0.000e+0, PID: 71.54 | (Putative glycoside hydrolase family 17 {ECO:00003... [more] |
| A0A1Q3CML2 | E-Value: 0.000e+0, PID: 73.19 | (1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA... [more] |
| A0A5N6LP19 | E-Value: 0.000e+0, PID: 73.96 | (Uncharacterized protein {ECO:0000313|EMBL:KAD2393... [more] |
| A0A2U1NQU0 | E-Value: 0.000e+0, PID: 68.26 | (Glycoside hydrolase family 17 {ECO:0000313|EMBL:P... [more] |
| A0A834CP62 | E-Value: 0.000e+0, PID: 67.41 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5466... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |