XM_017393885.1

Resource Type: 
Polypeptide
Name: 
XM_017393885.1
Identifier: 
XM_017393885.1-protein
Sequence: 
MIMEGSEDHFHRPNFPFQLLEKKEDEACSSSGYPPNNNSLALTTDINPSL
GRSTSNLQVVSAEPSKKAPPKRTSTKDRHTKVDGRGRRIRMPALCAARVF
QLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSG
SSMSVPSQLRSTYFNPNFSMPQRRSLFPGIGLSSENNASNLMSFQSTSQN
PNGMFQAKHETTTLELSEENLGQKRRTEQDMSQMGTYLMQSSTGSLPSSH
SSVPANFWMVANSGNQVMSGDPVWTFPTVNNSAALYRGTVSSGLHFMNFP
TPVALMPSQQLGAVNINSGGGGGGGGNGANGGFSEAQLSMLAGLSQYRPI
FGSGLTDSQASGSHSHHGCGGGDGGGDDRHDTNSHDHDHS
Sequence Length: 
390
Sequence Checksum: 
b7ac2f47fe4a86dfa38086fe6ed70738
View location in JBrowse: 
DCARv2_Chr5:4564480..4565652+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017393885.1, derives from mRNA, XM_017393885.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017393885.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017393885.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BKS4 (TCP domain-containing protein {ECO:0000259|PROSITE:PS51369})

HSP 1 Score: 491.115 bits (1263), Expect = 1.904e-171
Identity = 278/384 (72.40%), Postives = 317/384 (82.55%), Query Frame = 0
 
Query:   11 HRPNFPFQLLEKKEDEACSSSGYPPNNNSLALTTDINPSLGRSTSNLQVVSAEPSKKAPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFSMPQRRSLFPGIGLSSENNASNLMSFQSTSQNPNGMFQAKHE---TTTLELS--EENLGQKRRTEQDMS---QMGTYLMQSSTG-SLPSSHSSVPANFWMVANSGNQVMSGDPVWTFPTVNNSAALYRGTVSSGLHFMNFPTPVALMPSQQLGAVNINSGGGGGGGGNGANGGFSEAQLSMLAGLSQYRPIFGSGLTDSQASGSHSHHGCGGGDGGGDDRHDTNSH 385
             RPNFPFQLLEKKE+EACSSSGYP    SL ++ + NP+  RS S+LQ+V+ +PSKK PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFS+PQ RSLFPGIGLSSEN+ + L++FQST+ NP  M QAK E   T+TLELS  EE++G+KRR EQ++S   QMG+YL+QSSTG + P++H S+PANFWMVANS NQ+MSGDP+WTFP+VNNS ALYRGT+SSGLHFMNFPTPVAL+PSQQLG+         G G  G   G ++ QL ML GL+ YR I G G+++SQASGSHSHH       GGDDRHD  SH
Sbjct:   46 QRPNFPFQLLEKKEEEACSSSGYP----SLTISAETNPN--RSNSSLQIVADQPSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFSIPQSRSLFPGIGLSSENSPT-LLNFQSTNLNP--MLQAKQELRDTSTLELSETEESIGRKRRPEQELSSQHQMGSYLLQSSTGATAPATHGSIPANFWMVANSNNQIMSGDPIWTFPSVNNS-ALYRGTMSSGLHFMNFPTPVALLPSQQLGS---------GVGSGGGVCGINDGQLGMLTGLNPYRQISGPGVSESQASGSHSHH-------GGDDRHDAASH 403
[Close]
BLAST of XM_017393885.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438I1G0 ((Transcription factor TCP15 {ECO:0000313|EMBL:RVW90470.1}))

HSP 1 Score: 484.182 bits (1245), Expect = 2.979e-169
Identity = 286/390 (73.33%), Postives = 321/390 (82.31%), Query Frame = 0
 
Query:    3 MEGSEDHFHRPNFPFQLLEKKEDEACSSSGYPPNNNSLALTTDINPSLGRSTSNLQVVSAEPSKKAPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFSMPQRRSLFPGIGLSSENNASNLMSFQSTSQNPNGMFQAKHET--TTLELS--EENLGQKRRTEQDMS--QMGTYLMQSSTGSLPSSHSSVPANFWMVANSGNQVMSGDPVWTFPTVNNSAALYRGTVSSGLHFMNFPTPVALMPSQQL-GAVNINSGGGGGGGGNGANGGFSEAQLSMLAGLSQYRPIFGSGLTDSQASGSHSHHGCGGGDGGGDDRHDTNSH 385
            MEG  D  HRPNFPFQLLEKKE+EACSSSGYP    SLA+++   P+  RS S+LQ+ +AEPSKK PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFS+PQRRSLFP  GLSSE N+S L++FQS   N N MFQAK E   T+L+LS  EE++G+KRR EQD+S  QMG+YL+QSSTGS+P+SH  +PANFWM+ NS NQVMS DP+W FP+VNNS  LYRGT+SSGLHFMNFPTPVAL+PSQQL       SGGGGGGGG+G   G  E   +MLAGL+ YRP+ GSG+++SQASGS SHH       GGDDRHD  SH
Sbjct:    1 MEGG-DELHRPNFPFQLLEKKEEEACSSSGYP----SLAISS-AEPNTNRSNSSLQI-AAEPSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFSVPQRRSLFP--GLSSE-NSSTLVNFQSN--NLNSMFQAKQELRDTSLDLSETEESIGRKRRPEQDLSQQQMGSYLLQSSTGSIPASHGQIPANFWMLTNSNNQVMSADPIWPFPSVNNS-NLYRGTMSSGLHFMNFPTPVALLPSQQLSSGGGGGSGGGGGGGGSGGGSGMGEGHFNMLAGLNPYRPVMGSGVSESQASGSQSHH-------GGDDRHDATSH 370
[Close]
BLAST of XM_017393885.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438BV18 ((Transcription factor TCP15 {ECO:0000313|EMBL:RVW14680.1}))

HSP 1 Score: 482.641 bits (1241), Expect = 1.059e-168
Identity = 282/389 (72.49%), Postives = 317/389 (81.49%), Query Frame = 0
 
Query:    3 MEGSEDHFHRPNFPFQLLEKKEDEACSSSGYPPNNNSLALTTDINPSLGRSTSNLQVVSAEPSKKAPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFSMPQRRSLFPGIGLSSENNASNLMSFQSTSQNPNGMFQAKHET--TTLELS--EENLGQKRRTEQDMS--QMGTYLMQSSTGSLPSSHSSVPANFWMVANSGNQVMSGDPVWTFPTVNNSAALYRGTVSSGLHFMNFPTPVALMPSQQLGAVNINSGGGGGGGGNGANGGFSEAQLSMLAGLSQYRPIFGSGLTDSQASGSHSHHGCGGGDGGGDDRHDTNSH 385
            MEG  D  HRPNFPFQLLEKKE+EACSSSGYP    SLA+++   P+  RS S+LQ+ +AEPSKK PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFS+PQRRSLFP  GLSSE N+S L++FQS   N N MFQAK E   T+L+LS  EE++G+KRR EQD+S  QMG+YL+QSSTGS+P+SH  +PANFWM+ NS NQVMS DP+W FP+VNNS  LYRGT+SSGLHFMNFPTPVAL+PSQQL +      GGGGGGG        E   +MLAGL+ YRP+ GSG+++SQASGS SHH       GGDDRHD  SH
Sbjct:    1 MEGG-DELHRPNFPFQLLEKKEEEACSSSGYP----SLAISS-AEPNTNRSNSSLQI-AAEPSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFSVPQRRSLFP--GLSSE-NSSTLVNFQSN--NLNSMFQAKQELRDTSLDLSETEESIGRKRRPEQDLSQQQMGSYLLQSSTGSIPASHGQIPANFWMLTNSNNQVMSADPIWPFPSVNNS-NLYRGTMSSGLHFMNFPTPVALLPSQQLSSGGGGGSGGGGGGGGSGM---GEGHFNMLAGLNPYRPVMGSGVSESQASGSQSHH-------GGDDRHDATSH 366
[Close]
BLAST of XM_017393885.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6GT89 (TCP domain-containing protein {ECO:0000259|PROSITE:PS51369})

HSP 1 Score: 482.641 bits (1241), Expect = 1.059e-168
Identity = 282/389 (72.49%), Postives = 317/389 (81.49%), Query Frame = 0
 
Query:    3 MEGSEDHFHRPNFPFQLLEKKEDEACSSSGYPPNNNSLALTTDINPSLGRSTSNLQVVSAEPSKKAPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFSMPQRRSLFPGIGLSSENNASNLMSFQSTSQNPNGMFQAKHET--TTLELS--EENLGQKRRTEQDMS--QMGTYLMQSSTGSLPSSHSSVPANFWMVANSGNQVMSGDPVWTFPTVNNSAALYRGTVSSGLHFMNFPTPVALMPSQQLGAVNINSGGGGGGGGNGANGGFSEAQLSMLAGLSQYRPIFGSGLTDSQASGSHSHHGCGGGDGGGDDRHDTNSH 385
            MEG  D  HRPNFPFQLLEKKE+EACSSSGYP    SLA+++   P+  RS S+LQ+ +AEPSKK PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFS+PQRRSLFP  GLSSE N+S L++FQS   N N MFQAK E   T+L+LS  EE++G+KRR EQD+S  QMG+YL+QSSTGS+P+SH  +PANFWM+ NS NQVMS DP+W FP+VNNS  LYRGT+SSGLHFMNFPTPVAL+PSQQL +      GGGGGGG        E   +MLAGL+ YRP+ GSG+++SQASGS SHH       GGDDRHD  SH
Sbjct:    1 MEGG-DELHRPNFPFQLLEKKEEEACSSSGYP----SLAISS-AEPNTNRSNSSLQI-AAEPSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFSVPQRRSLFP--GLSSE-NSSTLVNFQSN--NLNSMFQAKQELRDTSLDLSETEESIGRKRRPEQDLSQQQMGSYLLQSSTGSIPASHGQIPANFWMLTNSNNQVMSADPIWPFPSVNNS-NLYRGTMSSGLHFMNFPTPVALLPSQQLSSGGGGGSGGGGGGGGSGM---GEGHFNMLAGLNPYRPVMGSGVSESQASGSQSHH-------GGDDRHDATSH 366
[Close]
BLAST of XM_017393885.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7NGH2 (TCP domain-containing protein {ECO:0000259|PROSITE:PS51369})

HSP 1 Score: 476.093 bits (1224), Expect = 1.422e-165
Identity = 284/409 (69.44%), Postives = 326/409 (79.71%), Query Frame = 0
 
Query:    3 MEGSEDHFH-RPNFPFQLLEKKEDEA--CSSSGYPPNNNSLALTTD--INPSLGRSTSNLQVV------SAEPSKKAPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFSMPQRRSLFPGIGLSSENNASNLMSFQSTSQNPNGMFQAKHET--TTLELS--EENLGQKRR--TEQDMS-----QMGTYLMQSSTGSLPSSHSSVPANFWMVAN-SGNQVMSGDPVWTFPTVNNSAALYRGTVSSGLHFMNFPTPVALMPSQQLGAVNINSGGGGGGGGNGANGGFSEAQLSMLAGLSQYRPIFGSGLTDSQASG--SHSHHGCGGGDGGGDDRHDTNSHD 386
            M+G +DHFH RPNFPF+LLEKK+DEA  CSSSG      SLA++ D  +NP +  +TSN+Q++      SAEPSKK PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEP+VIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYF PNF++PQRR+LFPGIGLS   N+S+ +    ++ N N M QAK E    T+ELS  EE +G+KRR   E D+S     QMG YLMQSS G++ +SH S+PANFWMV+N + +QVM+GDPVWTFP VNNSAA+YRGTVSSGLHFMNFPTPVAL+PSQQLGA    + GGGGGGG G  G +SE QL+MLAGL+ YRPIFG GL++  ASG  S SHH  G   GGGDDRHDT SH+
Sbjct:    1 MDGGDDHFHHRPNFPFKLLEKKDDEAASCSSSGTAAAYPSLAISADTNLNPGIRSNTSNMQIITTATTSSAEPSKKQPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFKPNFTLPQRRNLFPGIGLSPSENSSSNLLSFGSTMNLNQMLQAKQEMRDNTVELSEMEEGMGRKRRPPMELDLSSQHQQQMGNYLMQSSAGAMAASHPSIPANFWMVSNPNQHQVMNGDPVWTFPNVNNSAAVYRGTVSSGLHFMNFPTPVALLPSQQLGAGIGGNNGGGGGGGGGGGGCYSEGQLNMLAGLNPYRPIFGPGLSEPTASGSESQSHHRSG---GGGDDRHDTTSHN 406
[Close]
BLAST of XM_017393885.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834D0T5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5477024.1}))

HSP 1 Score: 472.626 bits (1215), Expect = 2.376e-164
Identity = 284/401 (70.82%), Postives = 322/401 (80.30%), Query Frame = 0
 
Query:    2 IMEGSEDH-FHRPNFPFQLLEKKEDEACSSS--GYPPNNNSLALTTDINPSLGRSTSNLQVVSAEPSKKAPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFSM-PQRRSLFPGIGLSSENNASNLMSFQSTSQNPNGMFQAKHE----TTTLELS---EENL-GQKRRTEQD--MS--QMGTYLMQSSTGSLPSSHSSVPANFWMVANSGNQVMSGDPVWTFPTVNNS-AALYRGTVSSGLHFMNFPTPVALMPSQQLGAVNINSGGGGGGGGNGANGGFSEAQLSMLAGLSQYRPIFGSGLTDSQASGSHSHHGCGGGDGGGDDRHDTNSH 385
            IMEG +DH  HRPNFPFQLLEKKEDE CS+S  GYP    SLA++    P+  + ++     SAEPSKK PPKR STKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRS+YFNPNFSM  QRRSLFPGIGLSSE+  S L++FQS+S   N M QAK E    T++L+LS   EE++ G+KRR EQ   MS  QMG+YL+QSSTG++P+SH  VPANFWMVANS NQVMSGDP+WTFP+VNNS AALYRGT+SSGLHFMNFP PVALMP QQLG+  I++     GGG+G N   SE  L+MLAG + YRP+ G+ +++SQASGSHSHHG     G GDDRHDT SH
Sbjct:   13 IMEGGDDHQLHRPNFPFQLLEKKEDEPCSTSTAGYP----SLAISPVAEPNAVQPST----ASAEPSKKPPPKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSMQQQRRSLFPGIGLSSESGTSTLLNFQSSSSM-NSMLQAKQELRDATSSLDLSETTEESIGGRKRRPEQQDLMSQHQMGSYLLQSSTGAIPASHGQVPANFWMVANSNNQVMSGDPIWTFPSVNNSAAALYRGTMSSGLHFMNFPPPVALMPGQQLGSSGIST-----GGGSGGNSSMSEGHLNMLAGFNPYRPMSGTSVSESQASGSHSHHG-----GAGDDRHDTTSH 394
[Close]
BLAST of XM_017393885.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PE21 ((Transcription factor like {ECO:0000313|EMBL:PSR89651.1}))

HSP 1 Score: 471.085 bits (1211), Expect = 6.051e-164
Identity = 269/397 (67.76%), Postives = 311/397 (78.34%), Query Frame = 0
 
Query:    3 MEGSEDHFHRPNFPFQLLEKKEDEACSSSGYPPNNNSLALTTDINPSLGRSTSNLQVVSA--EPSKKAPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFSMPQRRSLFPGIGLSSE--NNASNLMSFQSTSQNPNGMFQAKHE---TTTLELS---EENLGQKRRTEQ---DMSQMGTYLMQSS-TGSLPSSHSSVPANFWMVANSGNQVMSGDPVWTFPTVNNSAALYRGTVSSGLHFMNFPTPVALMPSQQLGAVNINSGGGGGGGGNGANGGFSEAQLSMLAGLSQYRPIFGSGLTDSQASGSHSHHGCGGGDGGGDDRHDTNSH 385
            M+GS D  HRPNFPFQLLEKKE+E CSSSGYP    SLA++ D   +   S+S LQ+ +A  EPSKK PPKR+STKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGS+MSVPS LRSTYFNPNFS+PQRR+LFPGI  S E  N+ S L++FQS   N   + QAKHE   TT+L+LS   E+++ +KRR EQ      Q+G YL+QSS  G++P+SH+S+PANFWMVANS N V+SGDP+WTFP+VNNS  LYRGT+SSGLHFMNFPTPVAL+PSQQ GA      GGGG GG G + G ++  L + AGL+ YRP    G+++SQ SGSHSHH       GGDDRHDT SH
Sbjct:    1 MDGS-DGLHRPNFPFQLLEKKEEETCSSSGYP----SLAISADTA-AANLSSSGLQIAAAAAEPSKKPPPKRSSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSVPSHLRSTYFNPNFSLPQRRTLFPGISNSPETPNSNSTLLNFQSPHPN-YSIPQAKHELRDTTSLDLSESAEDSINRKRRAEQLELSQHQIGNYLLQSSAAGAIPASHASIPANFWMVANSSNPVISGDPIWTFPSVNNS-GLYRGTMSSGLHFMNFPTPVALLPSQQFGAGL-GGSGGGGNGGGGVSSGLNDGHLGVFAGLNPYRP---GGVSESQPSGSHSHH-------GGDDRHDTTSH 378
[Close]
BLAST of XM_017393885.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4F4F4 ((transcription factor TCP14 {ECO:0000313|RefSeq:XP_018826533.1}))

HSP 1 Score: 471.085 bits (1211), Expect = 6.095e-164
Identity = 283/400 (70.75%), Postives = 321/400 (80.25%), Query Frame = 0
 
Query:    3 MEGSEDH-FHRPNFPFQLLEKKEDEACSSS--GYPPNNNSLALTTDINPSLGRSTSNLQVVSAEPSKKAPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFSM-PQRRSLFPGIGLSSENNASNLMSFQSTSQNPNGMFQAKHE----TTTLELS---EENL-GQKRRTEQD--MS--QMGTYLMQSSTGSLPSSHSSVPANFWMVANSGNQVMSGDPVWTFPTVNNS-AALYRGTVSSGLHFMNFPTPVALMPSQQLGAVNINSGGGGGGGGNGANGGFSEAQLSMLAGLSQYRPIFGSGLTDSQASGSHSHHGCGGGDGGGDDRHDTNSH 385
            MEG +DH  HRPNFPFQLLEKKEDE CS+S  GYP    SLA++    P+  + ++     SAEPSKK PPKR STKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRS+YFNPNFSM  QRRSLFPGIGLSSE+  S L++FQS+S   N M QAK E    T++L+LS   EE++ G+KRR EQ   MS  QMG+YL+QSSTG++P+SH  VPANFWMVANS NQVMSGDP+WTFP+VNNS AALYRGT+SSGLHFMNFP PVALMP QQLG+  I++     GGG+G N   SE  L+MLAG + YRP+ G+ +++SQASGSHSHHG     G GDDRHDT SH
Sbjct:    1 MEGGDDHQLHRPNFPFQLLEKKEDEPCSTSTAGYP----SLAISPVAEPNAVQPST----ASAEPSKKPPPKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSMQQQRRSLFPGIGLSSESGTSTLLNFQSSSSM-NSMLQAKQELRDATSSLDLSETTEESIGGRKRRPEQQDLMSQHQMGSYLLQSSTGAIPASHGQVPANFWMVANSNNQVMSGDPIWTFPSVNNSAAALYRGTMSSGLHFMNFPPPVALMPGQQLGSSGIST-----GGGSGGNSSMSEGHLNMLAGFNPYRPMSGTSVSESQASGSHSHHG-----GAGDDRHDTTSH 381
[Close]
BLAST of XM_017393885.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A7Q1 ((Putative transcription factor TCP15 {ECO:0000313|EMBL:MPA52850.1}))

HSP 1 Score: 462.611 bits (1189), Expect = 1.279e-160
Identity = 272/408 (66.67%), Postives = 309/408 (75.74%), Query Frame = 0
 
Query:    3 MEGSEDHFHRPNFPFQLLEKKEDEACSSSGYPPNNNSLALTTDINPSLGRSTSNLQVVSAEPSKKAPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFSMPQRRS-LFPGIGLSSENNASNLMSFQSTSQNPNGMFQAKHE----TTTLELSEE---NLGQKRR--TEQDMSQMGTYLMQSSTG------SLPSSHSSVPANFWMVANSGN--QVMS-----GDPVWTFPTVNNSAALYRGTVSSGLHFMNFPTPVALMPSQQLGAVNINSGGGGGGGGNGANGGFSEAQLSMLAGLSQYRPIFGS--GLTDSQASGSHSHHGCGGGDGGGDDRHDTNSH 385
            ME   D  HRPNFPFQLLEKKE+EACSSSGYP   ++LA++ +      +S SNLQ+ + +PSKK PPKR STKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGS+MSVPSQLRSTYFNPNFS+PQRRS LFPGIGLSS+ N+S L++FQS++  P  M QAK E    T +LELSE    ++G+KRR   EQ++S    YL+QSSTG         +SH+S+PANFWMVANS N  QVMS     GDP+WTFP+VNNS ALYRGT+SSGLHFMNFPTPVAL+P QQLG         GGGGG    GG SE  LSMLAGL+ YRP+FG   G+++SQAS              GDDRHDT SH
Sbjct:    1 MELGGDDLHRPNFPFQLLEKKEEEACSSSGYP---STLAISAET-----KSNSNLQITAVDPSKKPPPKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSVPSQLRSTYFNPNFSLPQRRSTLFPGIGLSSD-NSSTLLNFQSSNLAP--MLQAKQELRDSTNSLELSETEEISIGRKRRPPPEQELS----YLLQSSTGAMPMAMPAAASHASIPANFWMVANSNNHHQVMSGGGGGGDPIWTFPSVNNS-ALYRGTMSSGLHFMNFPTPVALLPGQQLGTG--GGAAAGGGGGGNGGGGLSEGHLSMLAGLNPYRPVFGPGGGISESQAS--------------GDDRHDTTSH 376
[Close]
BLAST of XM_017393885.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103YC57 ((Transcription factor, TCP {ECO:0000313|EMBL:KVI06398.1}))

HSP 1 Score: 459.144 bits (1180), Expect = 4.582e-159
Identity = 278/407 (68.30%), Postives = 316/407 (77.64%), Query Frame = 0
 
Query:    3 MEGSEDHFH-RPNFPFQLLEKKEDEACSSS-------GYP--PNNNSLALTTDINPSLGRSTSNLQVVSA-EPSKKAPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFSMPQRRSLFPGIGLSS-ENNASNLMSFQSTSQNPNGMFQAKHET--TTLELS--EENLGQKRR--TE-----QDMSQMGTYLMQSSTGSLPSSHSSVPANFWMVANSG-NQVMSGDPVWTFPTVNNSAALYRGTVSSGLHFMNFPTPVALMPSQQLGAVNINSGGGGGGGGNGANGGFSEAQLSMLAGLSQYRPIFGSGLTDSQASGSHSHHGCGGGDGGGDDRHDTNSH 385
            M+G +DHFH RPNFPFQLLEKK+DEACSSS       GYP  P +     T +  P L  +TSNLQ+ +  EPSKK  PKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHK+DGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRS YFNPNF+ PQ R+LFPGIGLSS EN++SNL++F S + N + M QAK ET   ++ELS  EE++G+KRR  TE     Q   QMG YL+QSS+ S+ ++H+S+PANFWMVANS  +Q MSGDP+WTFPTVNN+ ALYRG VS+GLHFMNFPTPVALMPSQQL +    +       GNG  GGFSE QLSML GL+ YRPIFG G ++ QASGS SHH      GGGDD HDT SH
Sbjct:    1 MDGGDDHFHHRPNFPFQLLEKKDDEACSSSANVSATSGYPTPPTD-----TNNNPPLLSNNTSNLQITTTLEPSKKLAPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSGYFNPNFTFPQNRNLFPGIGLSSTENSSSNLLNFGSAT-NLHQMLQAKQETRDNSVELSETEESIGRKRRHPTEPELPSQHQQQMGNYLLQSSSASMAANHASIPANFWMVANSNQHQSMSGDPIWTFPTVNNT-ALYRGAVSTGLHFMNFPTPVALMPSQQLASGVGGN------SGNGGGGGFSEGQLSMLTGLNPYRPIFGPGASEQQASGSQSHH------GGGDDPHDTTSH 388
Match NameStatsDescription
A0A5J5BKS4E-Value: 1.904e-171, PID: 72.40TCP domain-containing protein {ECO:0000259|PROSITE... [more]
A0A438I1G0E-Value: 2.979e-169, PID: 73.33(Transcription factor TCP15 {ECO:0000313|EMBL:RVW9... [more]
A0A438BV18E-Value: 1.059e-168, PID: 72.49(Transcription factor TCP15 {ECO:0000313|EMBL:RVW1... [more]
F6GT89E-Value: 1.059e-168, PID: 72.49TCP domain-containing protein {ECO:0000259|PROSITE... [more]
A0A6S7NGH2E-Value: 1.422e-165, PID: 69.44TCP domain-containing protein {ECO:0000259|PROSITE... [more]
A0A834D0T5E-Value: 2.376e-164, PID: 70.82(Uncharacterized protein {ECO:0000313|EMBL:KAF5477... [more]
A0A2R6PE21E-Value: 6.051e-164, PID: 67.76(Transcription factor like {ECO:0000313|EMBL:PSR89... [more]
A0A2I4F4F4E-Value: 6.095e-164, PID: 70.75(transcription factor TCP14 {ECO:0000313|RefSeq:XP... [more]
A0A5B7A7Q1E-Value: 1.279e-160, PID: 66.67(Putative transcription factor TCP15 {ECO:0000313|... [more]
A0A103YC57E-Value: 4.582e-159, PID: 68.30(Transcription factor, TCP {ECO:0000313|EMBL:KVI06... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.