XM_017398641.1

Resource Type: 
Polypeptide
Name: 
XM_017398641.1
Identifier: 
XM_017398641.1-protein
Sequence: 
MMKRHNRSSNGVVDASDPPGSNDLESRVVEDGGFRHGLNPLRFVGVFVIC
LMGFSVFFSFSLILKDSSTHALWAVAEATRTLDDFNPQQNTVTSLESDSS
HLFEVWNDEVLGGLLPGGFDAKSCLSRHHSGSYRKESQYKPSSYLLSRLR
SYESHLKRCGPYTMSYNITVDKLKAGQQPNPSESDCKYVVWISYSGLGNR
ILTLASAFLYALLTNRVLLVDRGTDMADLFCEPFPEMSWFLPLDFPISNQ
FNKFDQRSPHSYGNILKNATLEKSDTPFLYLHLAHDYGDHDKLFFCEQDQ
AAFQNINWLIIKTDNYFIPSLFLIPSFEQELSSLFPEKETVFHFLGRYLF
YPTNSIWGLITRFYEAYLAKADERIGIQIRVFDTGVGPFQHVLDQILACA
MKENLLPEVDENNQIIVPSTNQKTKAVLMTSLSSGYLDKVRDIYWEHPTV
TGEIIGVYQPSHEEYQQTEKKMQNKKAWAEMYLLSLTDKLVTSSWSTFGY
VAQGLGGLKPWILYKPENATAPDPPCRRAMSMEPCFHAPPFYDCKKKTGI
DTGAVVPHVRHCEDMSWGLKLVDHVSDL
Sequence Length: 
578
Sequence Checksum: 
4ee583d8dd45a87551108a795a75e97d
View location in JBrowse: 
DCARv2_Chr5:4805817..4808402-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017398641.1, derives from mRNA, XM_017398641.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017398641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017398641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BGW9 (Fucosyltransferase {ECO:0000256|RuleBase:RU367004} (2.4.1.- {ECO:0000256|RuleBase:RU367004}))

HSP 1 Score: 855.899 bits (2210), Expect = 0.000e+0
Identity = 420/577 (72.79%), Postives = 476/577 (82.50%), Query Frame = 0
 
Query:    2 MKRHNRSSNGVVDASDPPGSNDLESRVVEDGGFRHGLNPLRFVGVFVICLMGFSVFFSFSLILKDSSTHALWAVAEATRTLDDFNPQQNTVTSLESD-SSHLFEVWNDEVLGGLLPGGFDAKSCLSRHHSGSYRKESQYKPSSYLLSRLRSYESHLKRCGPYTMSYNITVDKLKAGQQPNPSESDCKYVVWISYSGLGNRILTLASAFLYALLTNRVLLVDRGTDMADLFCEPFPEMSWFLPLDFPISNQFNKFDQRSPHSYGNILKNATLEKSDT----PFLYLHLAHDYGDHDKLFFCEQDQAAFQNINWLIIKTDNYFIPSLFLIPSFEQELSSLFPEKETVFHFLGRYLFYPTNSIWGLITRFYEAYLAKADERIGIQIRVFDTGVGPFQHVLDQILACAMKENLLPEVDENNQIIVPSTNQKTKAVLMTSLSSGYLDKVRDIYWEHPTVTGEIIGVYQPSHEEYQQTEKKMQNKKAWAEMYLLSLTDKLVTSSWSTFGYVAQGLGGLKPWILYKPENATAPDPPCRRAMSMEPCFHAPPFYDCKKKTGIDTGAVVPHVRHCEDMSWGLKLVD 573
            MKR NR+SN     SDP G++D    V    G + GLNP++ +G+FV CLMG SV FS S+IL D  +  +WAVAEA R L+   PQ  TV  LE D SS   +V  D++LG LL  GFD +SCLSR+ S  YRKE  +KPSSYL+SRLRSYE+  KRCGPYT SYN T+++LK+GQ  +  +SDC YVVWIS+SGLGNRILTLASAFLYALLTNRVLLVDRG DM DLFCEPFPE+SW LP DFPI++QFN F Q+S H YGN+LKN  L  S      PF+YLHL HDY DHDKLFFC+QDQ   Q + WLI+K+DNYFIPSLFLIPSFEQELS+LFPEKETVFHFLGRYLF+PTN +WGLITR+Y+AYLAKADE+IGIQIRVFDTG+GPFQHVLDQILAC MKENLLPEV+    I  PS NQK+KAVLMTSLSSGY + VR+IYWE+PTVTGE+IGVYQPSHEE+QQT+K+M N+KAWAEMYLLSLTDKLVTSSWSTFGYVAQGLGGLKPWILYKPEN TAPDPPCRR MSMEPCFHAPPFYDCKKK G+DTGA+VPHVRHCEDMSWGLKLVD
Sbjct:    1 MKRLNRNSNDQPKPSDP-GNDD----VYRALGMKCGLNPMKLMGIFVACLMGLSVLFSISVILSDPPSDGIWAVAEA-RMLE-VKPQ--TVKDLEGDDSSQPVQVPRDKLLGSLLSAGFDERSCLSRYQSILYRKELGHKPSSYLISRLRSYEALHKRCGPYTDSYNKTLEQLKSGQ--HTGDSDCNYVVWISFSGLGNRILTLASAFLYALLTNRVLLVDRGLDMDDLFCEPFPEVSWLLPPDFPITSQFNSFSQKSHHCYGNMLKNDILANSTVSVVPPFIYLHLVHDYDDHDKLFFCDQDQTFLQKVPWLIMKSDNYFIPSLFLIPSFEQELSNLFPEKETVFHFLGRYLFHPTNQVWGLITRYYQAYLAKADEKIGIQIRVFDTGIGPFQHVLDQILACTMKENLLPEVNRQELITSPSGNQKSKAVLMTSLSSGYFEHVRNIYWEYPTVTGEVIGVYQPSHEEHQQTQKQMHNRKAWAEMYLLSLTDKLVTSSWSTFGYVAQGLGGLKPWILYKPENQTAPDPPCRRVMSMEPCFHAPPFYDCKKKMGVDTGALVPHVRHCEDMSWGLKLVD 566
[Close]
BLAST of XM_017398641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BE56 (Fucosyltransferase {ECO:0000256|RuleBase:RU367004} (2.4.1.- {ECO:0000256|RuleBase:RU367004}))

HSP 1 Score: 837.795 bits (2163), Expect = 0.000e+0
Identity = 409/582 (70.27%), Postives = 475/582 (81.62%), Query Frame = 0
 
Query:    2 MKRHNRSSNGVVDASDPPGSNDLESRVVEDGGFRHGLNPLRFVGVFVICLMGFSVFFSFSLILKDSSTHALWAVAEATRTLDDFNPQQNTVTSLESD-SSHLFEVWNDEVLGGLLPGGFDAKSCLSRHHSGSYRKESQYKPSSYLLSRLRSYESHLKRCGPYTMSYNITVDKLKAGQQPNPSESDCKYVVWISYSGLGNRILTLASAFLYALLTNRVLLVDRGTDMADLFCEPFPEMSWFLPLDFPISNQFNKFDQRSPHSYGNILKNATLEKSD----TPFLYLHLAHDYGDHDKLFFCEQDQAAFQNINWLIIKTDNYFIPSLFLIPSFEQELSSLFPEKETVFHFLGRYLFYPTNSIWGLITRFYEAYLAKADERIGIQIRVFDTGVGPFQHVLDQILACAMKENLLPEVDENNQIIVPSTNQKTKAVLMTSLSSGYLDKVRDIYWEHPTVTGEIIGVYQPSHEEYQQTEKKMQNKKAWAEMYLLSLTDKLVTSSWSTFGYVAQGLGGLKPWILYKPENATAPDPPCRRAMSMEPCFHAPPFYDCKKKTGIDTGAVVPHVRHCEDMSWGLKLVDHVSDL 578
            MKR +++SN     SDP  ++D  +  V     + GLNP++ +G+FV CLMG SV FS S+IL+D  +  +WAVAEA      F+ +  TV  LE D SS   +V  D++LGGLL  GFD +SCLSR+ S  YRKE  +KPSSYL+SRLRSYE+  KRCGPYT SYN T+++LK+G+Q     SDC YVVWIS+SGLGNRILTLASAFLYALLTNRVLLVDRG DM DLFCEPFPE+SW LP DFPI+NQFN F+ +S H YGN+LKN  L  S      PF+YLHLAHDYGDHDKLFFC+QDQ   + + WLI++TDNYFIPSLFLIPSFEQEL +LFPEKETVFH+LGRYLF+PTN +WGLITR+Y+AYLA ADE+IGIQIR+FDTG+GPFQHV+DQILAC MKENLLP+V+    I  PS NQ +KAVLMTSLSSGY + VR++YWE PTVTGE+IGVYQPSHEE+QQTEK M N+KAWAEMYLLSLTDKLVTS+WSTFGYVAQGLGGLKPWILYKPEN TAPDPPC R MSMEPCFHAPPFYDCKKKTG+DTGA+VPHVRHCEDMSWGLKLVD+ S+L
Sbjct:    1 MKRLSKNSNDPAKPSDPGNNDDYRAPKV-----KCGLNPMKMMGIFVACLMGLSVLFSISVILRDPLSDGIWAVAEARV----FDVKPETVKHLEDDDSSQPVQVPRDKLLGGLLSDGFDERSCLSRYQSFLYRKELGHKPSSYLISRLRSYEALHKRCGPYTESYNKTLEQLKSGKQS--GLSDCNYVVWISFSGLGNRILTLASAFLYALLTNRVLLVDRGVDMDDLFCEPFPEVSWLLPSDFPITNQFNSFNPKSHHCYGNMLKNDILANSTGSVVPPFVYLHLAHDYGDHDKLFFCDQDQTFLKKVPWLIMRTDNYFIPSLFLIPSFEQELGNLFPEKETVFHYLGRYLFHPTNQVWGLITRYYQAYLANADEKIGIQIRIFDTGIGPFQHVIDQILACTMKENLLPQVNRVEFIASPSGNQ-SKAVLMTSLSSGYFEHVRNMYWEFPTVTGEVIGVYQPSHEEHQQTEKLMHNRKAWAEMYLLSLTDKLVTSAWSTFGYVAQGLGGLKPWILYKPENQTAPDPPCGRVMSMEPCFHAPPFYDCKKKTGVDTGALVPHVRHCEDMSWGLKLVDNESEL 570
[Close]
BLAST of XM_017398641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4D786 (Fucosyltransferase {ECO:0000256|RuleBase:RU367004} (2.4.1.- {ECO:0000256|RuleBase:RU367004}))

HSP 1 Score: 824.313 bits (2128), Expect = 0.000e+0
Identity = 406/573 (70.86%), Postives = 460/573 (80.28%), Query Frame = 0
 
Query:    2 MKRHNRSSNGVVDASDPPGSNDLESRVVEDGGFRHGLNPLRFVGVFVICLMGFSVFFSFSLILKDSSTHALWAVAEATRTLDDFNPQQNTVTSLESDSSHLFEVWNDEVLGGLLPGGFDAKSCLSRHHSGSYRKESQYKPSSYLLSRLRSYESHLKRCGPYTMSYNITVDKLKAGQQPNPSESDCKYVVWISYSGLGNRILTLASAFLYALLTNRVLLVDRGTDMADLFCEPFPEMSWFLPLDFPISNQFNKFDQRSPHSYGNILKNATLEKSDTPFLYLHLAHDYGDHDKLFFCEQDQAAFQNINWLIIKTDNYFIPSLFLIPSFEQELSSLFPEKETVFHFLGRYLFYPTNSIWGLITRFYEAYLAKADERIGIQIRVFDTGVGPFQHVLDQILACAMKENLLPEVDENNQIIVPSTNQKTKAVLMTSLSSGYLDKVRDIYWEHPTVTGEIIGVYQPSHEEYQQTEKKMQNKKAWAEMYLLSLTDKLVTSSWSTFGYVAQGLGGLKPWILYKPENATAPDPPCRRAMSMEPCFHAPPFYDCKKKTGIDTGAVVPHVRHCEDMSWGLKLVDH 574
            MKR NR  N V    DP   N + SRV E    + GLNPL+ +GVFV CLMG SV FS S+IL+D  +  +W  AEA R L+   PQQ      E DSS   EV  D++L GLL  GFD +SCLSR+ S  Y K   +KPSSYL+SRLRSYE   KRCGP+T SYN TV++LK+GQQ +P+  DC Y+VWIS+SGLGNRILTLASAFLYALLTNRVLLVDRG D+ADLFCEPFPE+SW LP DFPI+ QF+ F+Q+S  SYGN+LK    +    PFLYLHL HDY D DKLFFC+Q+Q   + + WLI+KTDNYFIPSLFLIPSFEQEL +LFPEK TVFHFLGRYLF+PTN +WGL+ R+Y AYL+KADE+IGIQIRVFDTGVGPFQHVLDQI+AC +KENLLP ++    II P   Q TKAVLMTSL+SGY +KVRD+YWEHPTVTGE IGVYQPSHE YQQTEK+M N KAWAEMYLLSLTDKLVTSSWSTFGYVAQGLGGLKPWILYKPEN TAP+PPCRRAMSMEPCFHAPPFYDCKKK G+DTGA+VPHVRHCEDMSWGLKLVDH
Sbjct:    1 MKRFNR--NFVDPPRDP--VNAVVSRVPET---KWGLNPLKLMGVFVACLMGLSVLFSVSVILRDPLSDGIWVGAEA-RVLE-VKPQQEE----EDDSSQPAEVPKDKLLNGLLASGFDERSCLSRYQSVLYGKSLAHKPSSYLISRLRSYEDLHKRCGPFTESYNKTVEQLKSGQQTDPT--DCNYLVWISFSGLGNRILTLASAFLYALLTNRVLLVDRGVDIADLFCEPFPEVSWLLPTDFPITAQFSSFNQKSDLSYGNMLKKNPTQTDVLPFLYLHLVHDYDDQDKLFFCDQEQDFIKKVPWLIMKTDNYFIPSLFLIPSFEQELRNLFPEKATVFHFLGRYLFHPTNQVWGLVARYYRAYLSKADEKIGIQIRVFDTGVGPFQHVLDQIIACTLKENLLPGINPEEHIISPPGKQNTKAVLMTSLNSGYFEKVRDMYWEHPTVTGEFIGVYQPSHEGYQQTEKQMHNVKAWAEMYLLSLTDKLVTSSWSTFGYVAQGLGGLKPWILYKPENQTAPNPPCRRAMSMEPCFHAPPFYDCKKKIGVDTGALVPHVRHCEDMSWGLKLVDH 558
[Close]
BLAST of XM_017398641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4MID3 (Fucosyltransferase {ECO:0000256|RuleBase:RU367004} (2.4.1.- {ECO:0000256|RuleBase:RU367004}) (Fragment))

HSP 1 Score: 812.757 bits (2098), Expect = 0.000e+0
Identity = 387/585 (66.15%), Postives = 466/585 (79.66%), Query Frame = 0
 
Query:    2 MKRHNRSSNGVVDASDPPGSNDLESRVVEDGGFRHGLNPLRFVGVFVICLMGFSVFFSFSLILKDSSTHALWAVAEATRTLDDFNPQQNTVTSL------------ESDSSHLFEVWNDEVLGGLLPGGFDAKSCLSRHHSGSYRKESQYKPSSYLLSRLRSYESHLKRCGPYTMSYNITVDKLKAGQQPNPSESDCKYVVWISYSGLGNRILTLASAFLYALLTNRVLLVDRGTDMADLFCEPFPEMSWFLPLDFPISNQFNKFDQRSPHSYGNILKNATLEKSDTPFLYLHLAHDYGDHDKLFFCEQDQAAFQNINWLIIKTDNYFIPSLFLIPSFEQELSSLFPEKETVFHFLGRYLFYPTNSIWGLITRFYEAYLAKADERIGIQIRVFDTGVGPFQHVLDQILACAMKENLLPEVDENNQIIVPSTNQKTKAVLMTSLSSGYLDKVRDIYWEHPTVTGEIIGVYQPSHEEYQQTEKKMQNKKAWAEMYLLSLTDKLVTSSWSTFGYVAQGLGGLKPWILYKPENATAPDPPCRRAMSMEPCFHAPPFYDCKKKTGIDTGAVVPHVRHCEDMSWGLKLVDH 574
            M+R NR+S+  +        N   SR  E    + GLNP++ +G+ V CLM  SV FS S+IL+D  + ++W+ AEA R L   +  Q T   +            E DS H  +V  D++LGGLL  GFD +SCLSR+ S  Y K   + PS YL+SRLRSYE+ LKRCGP+T  YN T+++L +G+Q     SDC YVVWIS+SGLGNRILTLASAFLY+LLTNRVLLVDRG D+ DLFCEPFP++SW LP DFP+++QF+  DQ+S HSYGN+LKN +L  S  PF+YLHL HDYGDHDKLFFC+QDQ+    + WL++KTDNYF+PSLFLIPSFE+EL +LFPEK+TVFHFLGRYLF+PTN +WGL+TR+Y+AYLAKADE+IGIQIRVFDTGVGPFQHVLDQILAC + ENLLP+++    II  +  QK+KAVLMTSLSSGY +++RD+YWE+PT TG+IIG+YQPSHEEYQQTEK+M N KAWAEMYLLS+TDKLVTSSWSTFGYVAQGLGGLKPWILYKPEN+TAPDPPC+RAMSMEPCFHAPPF+DCKKK G+DTGA+VPHVRHCEDMSWGLKLVDH
Sbjct:   33 MRRLNRNSDDQLRDQ----GNGAVSRAPET---KCGLNPMKSMGILVACLMLLSVVFSVSVILEDLPSESIWSGAEA-RVLQVKSQLQGTSNLIFYLFIAINFRGSEDDSPHGVKVPGDKLLGGLLTNGFDERSCLSRYQSVLYSKALTHNPSPYLISRLRSYEALLKRCGPHTEPYNKTIEQLVSGKQTG--TSDCNYVVWISFSGLGNRILTLASAFLYSLLTNRVLLVDRGVDITDLFCEPFPDVSWLLPTDFPLTSQFSHLDQKSVHSYGNMLKNNSLVDSTLPFVYLHLVHDYGDHDKLFFCDQDQSFLDRVPWLVMKTDNYFVPSLFLIPSFEEELRNLFPEKQTVFHFLGRYLFHPTNQVWGLVTRYYQAYLAKADEKIGIQIRVFDTGVGPFQHVLDQILACTLNENLLPKINRQEHIIGTAGKQKSKAVLMTSLSSGYFERIRDMYWEYPTTTGDIIGIYQPSHEEYQQTEKQMHNVKAWAEMYLLSMTDKLVTSSWSTFGYVAQGLGGLKPWILYKPENSTAPDPPCQRAMSMEPCFHAPPFFDCKKKIGVDTGALVPHVRHCEDMSWGLKLVDH 607
[Close]
BLAST of XM_017398641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9F3Y0 (Fucosyltransferase {ECO:0000256|RuleBase:RU367004} (2.4.1.- {ECO:0000256|RuleBase:RU367004}))

HSP 1 Score: 803.512 bits (2074), Expect = 0.000e+0
Identity = 388/580 (66.90%), Postives = 450/580 (77.59%), Query Frame = 0
 
Query:    2 MKRHNRSSNGVVDASDPPGSNDLESRVVEDGGFRHGLNPLRFVGVFVICLMGFSVFFSFSLILKDSSTHALWAVAEATRTLDDFNPQQNTVTSLESDSSHLFEVWNDEVLGGLLPGGFDAKSCLSRHHSGSYRKESQYKPSSYLLSRLRSYESHLKRCGPYTMSYNITVDKLKAGQQPNPSESDCKYVVWISYSGLGNRILTLASAFLYALLTNRVLLVDRGTDMADLFCEPFPEMSWFLPLDFPISNQFNKFDQRSPHSYGNILKNATLEKSDTPF---LYLHLAHDYGDHDKLFFCEQDQAAFQNINWLIIKTDNYFIPSLFLIPSFEQELSSLFPEKETVFHFLGRYLFYPTNSIWGLITRFYEAYLAKADERIGIQIRVFDTGVGPFQHVLDQILACAMKENLLPEVDENNQIIVPSTNQKTKAVLMTSLSSGYLDKVRDIYWEHPTVTGEIIGVYQPSHEEYQQTEKKMQNKKAWAEMYLLSLTDKLVTSSWSTFGYVAQGLGGLKPWILYKPENATAPDPPCRRAMSMEPCFHAPPFYDCKKKTGIDTGAVVPHVRHCEDMSWGLKLVDHVSDL 578
            MKR  ++ +   D + P   N     ++ D   + G NP++ +G+ V+CLM  SV FS S++LKD  +  +W  +  T  +        T    E D+        D++L GL+  GFD  SCLSR+HS  YRKE  +KPSSYL+SRLR YE+  K+CGPYT SYN T+++LK+     PSE  C Y+VWISYSGLGNRILTLASAFLYALLTNRVLLVD G D+ADLFCEPFPE+SWFLP DFP+ NQFN F+Q SP  YG +LKN T+  S       +YLHLAHDY DHDKLFFC++DQ   Q + WLI+KTDNYFIPSL+L+PSFEQELS+LFP KETVFHFLGRYLF+PTN +WGLITR+YEAYLAKADERIGIQIRVFDTG GPFQHVLDQILAC  KENLLPE ++   II  S  QK+KAVLMTSL+SGY +KVRDIYWEHPTVTGE+IG++QPSHEEYQQTEK++ N+KAWAEMYLLSLTD LVTSSWSTFGYVAQGLGGL+PWIL KPEN T+PDPPCRRAMSMEPCFHAPPFYDCK K GIDTG VVPHVRHCEDMSWGLKLVDH   L
Sbjct:    1 MKRLKKNQDDDNDIARP--QNSETHILLRDPDRKSGPNPMKLMGILVVCLMVISVLFSVSVVLKDPPSDNVWKASSETSFV-----HVGTKKGSEDDAFLSIGAPKDKLLNGLISAGFDEGSCLSRYHSVEYRKELSHKPSSYLISRLRKYEALHKQCGPYTESYNKTLEQLKSVHYTGPSE--CNYLVWISYSGLGNRILTLASAFLYALLTNRVLLVDPGVDVADLFCEPFPEVSWFLPPDFPLKNQFNSFNQESPQCYGKMLKNNTITNSKRLIPSSVYLHLAHDYDDHDKLFFCDEDQTFLQKVPWLIVKTDNYFIPSLYLMPSFEQELSNLFPNKETVFHFLGRYLFHPTNQVWGLITRYYEAYLAKADERIGIQIRVFDTGTGPFQHVLDQILACTTKENLLPETNKQQHIISSSRIQKSKAVLMTSLNSGYFEKVRDIYWEHPTVTGEVIGIFQPSHEEYQQTEKQVHNRKAWAEMYLLSLTDMLVTSSWSTFGYVAQGLGGLRPWILDKPENQTSPDPPCRRAMSMEPCFHAPPFYDCKAKVGIDTGKVVPHVRHCEDMSWGLKLVDHYDKL 571
[Close]
BLAST of XM_017398641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2MQB6 (Fucosyltransferase {ECO:0000256|RuleBase:RU367004} (2.4.1.- {ECO:0000256|RuleBase:RU367004}))

HSP 1 Score: 802.742 bits (2072), Expect = 0.000e+0
Identity = 385/577 (66.72%), Postives = 453/577 (78.51%), Query Frame = 0
 
Query:    6 NRSSNGVVDASDPPGSNDLESRVVEDGGFRHGLNPLRFVGVFVICLMGFSVFFSFSLILKDSSTHALWAVAEATRTLDDFNPQQNTVTSLESDSSHLFEVWNDEVLGGLLPGGFDAKSCLSRHHSGSYRKESQYKPSSYLLSRLRSYESHLKRCGPYTMSYNITVDKLKAGQQPNPSESDCKYVVWISYSGLGNRILTLASAFLYALLTNRVLLVDRGTDMADLFCEPFPEMSWFLPLDFPISNQFNKFDQRSPHSYGNILKNATLEKSDTPF---LYLHLAHDYGDHDKLFFCEQDQAAFQNINWLIIKTDNYFIPSLFLIPSFEQELSSLFPEKETVFHFLGRYLFYPTNSIWGLITRFYEAYLAKADERIGIQIRVFDTGVGPFQHVLDQILACAMKENLLPEVDENNQIIVPST-NQKTKAVLMTSLSSGYLDKVRDIYWEHPTVTGEIIGVYQPSHEEYQQTEKKMQNKKAWAEMYLLSLTDKLVTSSWSTFGYVAQGLGGLKPWILYKPENATAPDPPCRRAMSMEPCFHAPPFYDCKKKTGIDTGAVVPHVRHCEDMSWGLKLVDHVSDL 578
            + + NGV   + PP S+     VV D   + G NP+R VG+ V+CLM  SV FS S++LKD  +  +W  A   R +D   P++ +    E D+     V  D++L GLL  GFD  SC+SR+ S  YRKE  +KPSSYL SRLR YE+  K+CGPYT  YN T+++LK+G     SE  C YVVWISYSGLGNRILTLA++FLYALLTNRVLLVD G D+ADLFCEPFPE+SWFLP DFP+ N FN F+Q SP  YG ++KN T+   +      +YLHLAHDYGDHDKLFFC++DQ+  Q + WLI+KTDNYFIPS+FLIPSFEQELS+LFP ++TVFHFLGRYLF+PTN +WGLITR+YEAYLA+A ERIGIQIRVFD G GPFQHVLDQILAC +KENLLPE++    II  S   QK+KAVLMTSLSSGY +K+RDIYWEHPTVTGE++G++QPSHEEYQQTEK + N+KAWAEMYLLS+TD LVTSSWSTFGYVAQGLGGLKPWILYKPEN TAPDPPCRRAMSMEPCFHAPPFYDCK K G+DTG +VPHVRHCEDMSWGLKLVDH  +L
Sbjct:   10 DENGNGV---ARPPNSD--SHIVVRDPDRKSGSNPMRLVGIVVVCLMIISVLFSVSVVLKDPPSDKVWIAAAEARFVD-VGPKKGS----EDDAVQSTGVPKDKLLRGLLSAGFDEGSCISRYQSAEYRKELSHKPSSYLTSRLRRYEALHKKCGPYTELYNKTLEQLKSGHSTGSSE--CNYVVWISYSGLGNRILTLAASFLYALLTNRVLLVDPGVDVADLFCEPFPEVSWFLPPDFPLKNHFNSFNQESPQCYGKMVKNNTIANLNGLIPSSVYLHLAHDYGDHDKLFFCDEDQSFLQKVPWLIVKTDNYFIPSIFLIPSFEQELSNLFPNRDTVFHFLGRYLFHPTNQVWGLITRYYEAYLARAHERIGIQIRVFDVGTGPFQHVLDQILACTIKENLLPEINREQHIISTSKGTQKSKAVLMTSLSSGYSEKIRDIYWEHPTVTGEVVGIFQPSHEEYQQTEKLVHNRKAWAEMYLLSMTDMLVTSSWSTFGYVAQGLGGLKPWILYKPENGTAPDPPCRRAMSMEPCFHAPPFYDCKAKVGVDTGKIVPHVRHCEDMSWGLKLVDHYDEL 574
[Close]
BLAST of XM_017398641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834GQQ5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7136591.1}))

HSP 1 Score: 801.971 bits (2070), Expect = 0.000e+0
Identity = 385/604 (63.74%), Postives = 464/604 (76.82%), Query Frame = 0
 
Query:    2 MKRHNRSSNGVVDASDPPGSNDLESRVVEDGGFRHGLNPLRFVGVFVICLMGFSVFFSFSLILKDSSTHALWAVAEATRTLDDFNPQQNTVTSL-------------------------------ESDSSHLFEVWNDEVLGGLLPGGFDAKSCLSRHHSGSYRKESQYKPSSYLLSRLRSYESHLKRCGPYTMSYNITVDKLKAGQQPNPSESDCKYVVWISYSGLGNRILTLASAFLYALLTNRVLLVDRGTDMADLFCEPFPEMSWFLPLDFPISNQFNKFDQRSPHSYGNILKNATLEKSDTPFLYLHLAHDYGDHDKLFFCEQDQAAFQNINWLIIKTDNYFIPSLFLIPSFEQELSSLFPEKETVFHFLGRYLFYPTNSIWGLITRFYEAYLAKADERIGIQIRVFDTGVGPFQHVLDQILACAMKENLLPEVDENNQIIVPSTNQKTKAVLMTSLSSGYLDKVRDIYWEHPTVTGEIIGVYQPSHEEYQQTEKKMQNKKAWAEMYLLSLTDKLVTSSWSTFGYVAQGLGGLKPWILYKPENATAPDPPCRRAMSMEPCFHAPPFYDCKKKTGIDTGAVVPHVRHCEDMSWGLKLVDH 574
            M+R NR+S+  +        N   SR  E    + GLNP++ +G+ V CLM  SV FS S+IL+D  + ++W+ AEA R L    PQ   + S+                               E DS H  +V  D++LGGLL  GFD +SCLSR+ S  Y K   + PS YL+SRLRSYE+  KRCGP+T  YN T+++L +G+Q     SDCKYVVWIS+SGLGNRILTLASAFLY+LLTNRVLLVDRG D+ DLFCEPFP++SW LP DFP+++QF+  DQ+S HSYGN++KN +L  S  PF+YLHL HDYGDHDKLFFC+QDQ+    + WL++KTDNYF+PSLFLIPSFE EL +LFPEK+TVFHFLGRYLF+PTN +WGL+TR+Y+AYLAKADE+IGIQIRVFDTGVGPFQHVLDQILAC +  NLLP+++    II  +  QK+KAVLMTSLSSGY +++RD+YWE+PT TG+IIG+YQPSHEEYQQTEK+M N KAWAEMYLLS+TDKLVTSSWSTFGYVAQGLGGLKPWILYKPEN+TAPDPPC+RAMSMEPCFHAPPF+DC KK G+DTGA+VPHVRHCEDMSWGLKLVDH
Sbjct:   33 MRRLNRNSDDQLRDQ----GNGAVSRAPET---KCGLNPMKSMGILVACLMLLSVVFSVSVILEDLPSESIWSGAEA-RVL-QVKPQLQALVSVIALIPKLENSSAANVHKPFQEQESYMLVVGSEDDSPHDVKVPGDKLLGGLLTNGFDERSCLSRYQSVLYSKALTHNPSPYLISRLRSYEALHKRCGPHTEPYNKTIEQLASGKQTG--TSDCKYVVWISFSGLGNRILTLASAFLYSLLTNRVLLVDRGVDITDLFCEPFPDVSWLLPTDFPLTSQFSHLDQKSVHSYGNMVKNNSLVDSTLPFVYLHLVHDYGDHDKLFFCDQDQSFLDRVPWLVMKTDNYFVPSLFLIPSFETELRNLFPEKQTVFHFLGRYLFHPTNQVWGLVTRYYQAYLAKADEKIGIQIRVFDTGVGPFQHVLDQILACTLNANLLPKINRQEHIIGTAGKQKSKAVLMTSLSSGYFERIRDMYWEYPTTTGDIIGIYQPSHEEYQQTEKQMHNVKAWAEMYLLSMTDKLVTSSWSTFGYVAQGLGGLKPWILYKPENSTAPDPPCQRAMSMEPCFHAPPFFDCMKKIGVDTGALVPHVRHCEDMSWGLKLVDH 625
[Close]
BLAST of XM_017398641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834YLC3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8390155.1}))

HSP 1 Score: 798.505 bits (2061), Expect = 0.000e+0
Identity = 383/576 (66.49%), Postives = 449/576 (77.95%), Query Frame = 0
 
Query:    2 MKRHNRSSNGVVDASDPPGSNDLESRVVEDGGFRHGLNPLRFVGVFVICLMGFSVFFSFSLILKDSSTHALWAVAEATRTLDDFNPQQNTVTSLESDSSHLFEVWNDEVLGGLLPGGFDAKSCLSRHHSGSYRKESQYKPSSYLLSRLRSYESHLKRCGPYTMSYNITVDKLKAGQQPNPSESDCKYVVWISYSGLGNRILTLASAFLYALLTNRVLLVDRGTDMADLFCEPFPEMSWFLPLDFPISNQFNKFDQRSPHSYGNILKNATLEKSD---TPFLYLHLAHDYGDHDKLFFCEQDQAAFQNINWLIIKTDNYFIPSLFLIPSFEQELSSLFPEKETVFHFLGRYLFYPTNSIWGLITRFYEAYLAKADERIGIQIRVFDTGVGPFQHVLDQILACAMKENLLPEVDENNQIIVPSTNQKTKAVLMTSLSSGYLDKVRDIYWEHPTVTGEIIGVYQPSHEEYQQTEKKMQNKKAWAEMYLLSLTDKLVTSSWSTFGYVAQGLGGLKPWILYKPENATAPDPPCRRAMSMEPCFHAPPFYDCKKKTGIDTGAVVPHVRHCEDMSWGLKLVDH 574
            MKR  +  N     +DP   ++  SRV E    + GLN +R +G+   CL   +V  + S+I +   T       EA R  +            E DS+   +V  D++LGGLL  GFD  SCLSR+ S  YRK   +KPSSYLLSRLR YE+  KRCGPYT +YN T+++L +G+   P+E  C YV+WIS+SGLGNRILTLASAFLYALLTNRVLLVDRG DM DLFCEPFPE SW LPLDFP++ QFN FDQ+SP  YGN+LKN     S     P+LYLHL HDYGDHDKLFFC+QDQ  FQ + WLI+KTDNYF+PSLFLIPSFEQELS+LFP+K+TVFH LGRYLF+P+N +WG+ITR+Y+AYLAKADER+GIQIRVFDTG GPFQHV DQ+LACA+KE LLPEV+    I+ PS NQ +KA+LMTSLSSGY +K+R++YWEHPT+TGE+IGV+QPSHEE+QQTEK+M N+KAWAEMYLLSLTD L+TSSWSTFGYVAQGLGGLKPWIL KPEN TAPDPPCRRAMSMEPCFHAPPFYDCK K GIDTGA+VPHVRHCEDMSWGLKLVDH
Sbjct:    3 MKRFRKQLNPS-KPTDP--EDEAVSRVAER---KSGLNTMRLMGILAACLTILTVLVTISVIYRPPPTDRFPGFPEA-RVFE-------VKAEKEDDSTQFLDVPKDKLLGGLLAAGFDEGSCLSRYQSSLYRKAPPHKPSSYLLSRLRKYEALHKRCGPYTEAYNKTLEQLNSGRNNRPTE--CNYVIWISFSGLGNRILTLASAFLYALLTNRVLLVDRGADMTDLFCEPFPEKSWLLPLDFPLNYQFNSFDQKSPQCYGNMLKNNITNNSTGSLLPYLYLHLVHDYGDHDKLFFCDQDQTLFQTVPWLIMKTDNYFVPSLFLIPSFEQELSNLFPDKQTVFHHLGRYLFHPSNPVWGMITRYYQAYLAKADERVGIQIRVFDTGTGPFQHVFDQVLACAVKEKLLPEVNAQEPIVSPSRNQGSKAILMTSLSSGYFEKLRNMYWEHPTLTGEVIGVFQPSHEEHQQTEKQMHNRKAWAEMYLLSLTDALITSSWSTFGYVAQGLGGLKPWILDKPENRTAPDPPCRRAMSMEPCFHAPPFYDCKAKIGIDTGALVPHVRHCEDMSWGLKLVDH 562
[Close]
BLAST of XM_017398641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RQ05 (Fucosyltransferase {ECO:0000256|RuleBase:RU367004} (2.4.1.- {ECO:0000256|RuleBase:RU367004}))

HSP 1 Score: 796.193 bits (2055), Expect = 0.000e+0
Identity = 381/554 (68.77%), Postives = 452/554 (81.59%), Query Frame = 0
 
Query:   28 VVEDGGFRHGLNPLRFVGVFVICLMGFSVFFSFSLILKDSSTHALWAVAEATRTLDDFNPQQNTVTSLESDSSHLFEVWNDEVLGGLLPGGFDAKSCLSRHHSGSYRKESQYKPSSYLLSRLRSYESHLKRCGPYTMSYNITVDKLKAGQQPNPSESDCKYVVWISYSGLGNRILTLASAFLYALLTNRVLLVDRGTDMADLFCEPFPEMSWFLPLDFPISNQFNKFDQRSPHSYGNILKNATLEKSDT---PFLYLHLAHDYGDHDKLFFCEQDQAAFQNINWLIIKTDNYFIPSLFLIPSFEQELSSLFPEKETVFHFLGRYLFYPTNSIWGLITRFYEAYLAKADERIGIQIRVFDTGVGPFQHVLDQILACAMKENLLPEVDENNQIIVPSTNQKTKAVLMTSLSSGYLDKVRDIYWEHPTVTGEIIGVYQPSHEEYQQTEKKMQNKKAWAEMYLLSLTDKLVTSSWSTFGYVAQGLGGLKPWILYKPENATAPDPPCRRAMSMEPCFHAPPFYDCKKKTGIDTGAVVPHVRHCEDMSWGLKLVDHVSDL 578
            V+ D   + G NP+R +G+ V+CLM  SV FS S++L D  + ++W ++E  + + +  P+Q +    E   S   EV  D++LGGLL  GFD  SCLSR+ S  YRKE  +KPSSYL+SRLR YE+  K+CGPYT SYN T+++LK+G    PSE  C YVVW+S+SGLGNRIL+LAS+FLYALLTNRVLLVD G D+ADL CEPFPE+SWFLP DFP+ NQFN+F+Q SP  YG +LKN T+  S+    P +YLHL HDY DHDKLFFC+++Q   Q + WLI+KTDNYFIPSLFLIPSFEQELS LFP+K+TVFHF+GRYLF+PTN +WGLITR+YE+YLAKADERIGIQIRVFDTG GPFQHVLDQILAC +KENLLPE++    II PS  QK+KAVLMTSLSSGY +KVR++YWE+PTVTGE++G+YQPSHEEYQQTEK+M N+KAW EMYLLSLTD LVTSSWSTFGYVAQGLGGLKPWILYKPEN T P+PPCRRAMSMEPCFHAPPFYDCK K G+DTGA+VPHVRHCEDMSWGLKLVDH  +L
Sbjct:  104 VLVDPDRKLGSNPMRLMGIIVVCLMVVSVLFSVSVVLSDLPSDSIWELSE--KRVLEVEPRQGS----EDGVSQSTEVPKDKLLGGLLSAGFDEGSCLSRYQSVKYRKEVSHKPSSYLISRLRRYEALHKQCGPYTESYNKTLEQLKSGHYTGPSE--CNYVVWVSFSGLGNRILSLASSFLYALLTNRVLLVDPGVDVADLLCEPFPEVSWFLPPDFPLKNQFNQFNQESPECYGKMLKNITITNSNRLTPPSVYLHLVHDYNDHDKLFFCDEEQTFLQKVPWLIVKTDNYFIPSLFLIPSFEQELSKLFPKKDTVFHFMGRYLFHPTNQVWGLITRYYESYLAKADERIGIQIRVFDTGTGPFQHVLDQILACTVKENLLPEINREQHIIGPSGTQKSKAVLMTSLSSGYFEKVREMYWEYPTVTGEVVGIYQPSHEEYQQTEKQMHNRKAWTEMYLLSLTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENRTTPNPPCRRAMSMEPCFHAPPFYDCKAKIGVDTGALVPHVRHCEDMSWGLKLVDHHDEL 649
[Close]
BLAST of XM_017398641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4H420 (Fucosyltransferase {ECO:0000256|RuleBase:RU367004} (2.4.1.- {ECO:0000256|RuleBase:RU367004}))

HSP 1 Score: 794.267 bits (2050), Expect = 0.000e+0
Identity = 387/578 (66.96%), Postives = 453/578 (78.37%), Query Frame = 0
 
Query:    2 MKRHNRS---SNGVVDASDPPGSNDLESRVVEDGGFRHGLNPLRFVGVFVICLMGFSVFFSFSLILKDSSTHALWAVAEATRTLDDFNPQQNTVTSLESDSSHLFEVWNDEVLGGLLPGGFDAKSCLSRHHSGSYRKESQYKPSSYLLSRLRSYESHLKRCGPYTMSYNITVDKLKAGQQPNPSESDCKYVVWISYSGLGNRILTLASAFLYALLTNRVLLVDRGTDMADLFCEPFPEMSWFLPLDFPISNQFNKFDQRSPHSYGNILKNAT---LEKSDTPFLYLHLAHDYGDHDKLFFCEQDQAAFQNINWLIIKTDNYFIPSLFLIPSFEQELSSLFPEKETVFHFLGRYLFYPTNSIWGLITRFYEAYLAKADERIGIQIRVFDTGVGPFQHVLDQILACAMKENLLPEVDENNQIIVPSTNQKTKAVLMTSLSSGYLDKVRDIYWEHPTVTGEIIGVYQPSHEEYQQTEKKMQNKKAWAEMYLLSLTDKLVTSSWSTFGYVAQGLGGLKPWILYKPENATAPDPPCRRAMSMEPCFHAPPFYDCKKKTGIDTGAVVPHVRHCEDMSWGLKLVD 573
            MKR  ++    NG  + S+    +D+ S +V D   + G NP+R +G+ V+CLM  SV FS S+ILKD  +  +   A  TR L     Q  +    E D+S  F +  D++LGGLL  GF+  SCLSR+ S  Y KE  +KPSSYL+SRLR YE+  K+CGPYT SYN T+++LK+G    PSE  C YVVWIS+SGLGNRILTL S+FLYALLTNRVLLVD G D+ADL CEPFP++SWFLP DFP+ NQFN F+Q SP  YG +LKN T   L +   P +YLHL HDY DHDKLFFC++DQ   Q + WLI+KTDNYFIPSLFLIPS EQEL +LFP+KETVFHFLGRYLF+PTN +WGLITR+YEAYL+KADERIGIQIRVFD G GPFQHVLDQILACAMKENLLPE++    II PS   K+KAVLMTSLSSGY +K+RD+YWEHPTVTGE++G+YQPSHEEYQQTEK   N+KAWAEMYLLSL+D LVTSSWSTFGYVAQGLGGL+PWILYKPEN TAP+PPC+RAMSMEPCFHAPPFYDCK K G+DTG +VPHVRHCEDMSWGLKLVD
Sbjct:    1 MKRFKKNLDDDNG--NHSEKRPDSDIHSFLV-DPDRKSGYNPMRLMGITVVCLMVISVLFSASVILKDPPSDGIRE-ASQTRVL-----QVGSEKGSEDDASQSFGLPKDKLLGGLLSAGFNKGSCLSRYQSVEYHKELLHKPSSYLISRLRRYEALHKQCGPYTESYNKTLEQLKSGHNTGPSE--CNYVVWISFSGLGNRILTLVSSFLYALLTNRVLLVDPGVDVADLLCEPFPDVSWFLPTDFPLKNQFNNFNQESPQCYGKMLKNTTISNLNRLMPPSVYLHLVHDYDDHDKLFFCDEDQHFLQKVPWLIMKTDNYFIPSLFLIPSLEQELMNLFPKKETVFHFLGRYLFHPTNQVWGLITRYYEAYLSKADERIGIQIRVFDIGTGPFQHVLDQILACAMKENLLPEINRQQHIISPSGTNKSKAVLMTSLSSGYFEKIRDMYWEHPTVTGEVVGIYQPSHEEYQQTEKLFHNRKAWAEMYLLSLSDVLVTSSWSTFGYVAQGLGGLRPWILYKPENRTAPNPPCQRAMSMEPCFHAPPFYDCKTKVGVDTGEIVPHVRHCEDMSWGLKLVD 567
Match NameStatsDescription
A0A5B7BGW9E-Value: 0.000e+0, PID: 72.79Fucosyltransferase {ECO:0000256|RuleBase:RU367004}... [more]
A0A5J5BE56E-Value: 0.000e+0, PID: 70.27Fucosyltransferase {ECO:0000256|RuleBase:RU367004}... [more]
A0A4S4D786E-Value: 0.000e+0, PID: 70.86Fucosyltransferase {ECO:0000256|RuleBase:RU367004}... [more]
A0A6A4MID3E-Value: 0.000e+0, PID: 66.15Fucosyltransferase {ECO:0000256|RuleBase:RU367004}... [more]
A0A2N9F3Y0E-Value: 0.000e+0, PID: 66.90Fucosyltransferase {ECO:0000256|RuleBase:RU367004}... [more]
A0A7N2MQB6E-Value: 0.000e+0, PID: 66.72Fucosyltransferase {ECO:0000256|RuleBase:RU367004}... [more]
A0A834GQQ5E-Value: 0.000e+0, PID: 63.74(Uncharacterized protein {ECO:0000313|EMBL:KAF7136... [more]
A0A834YLC3E-Value: 0.000e+0, PID: 66.49(Uncharacterized protein {ECO:0000313|EMBL:KAF8390... [more]
A0A5N6RQ05E-Value: 0.000e+0, PID: 68.77Fucosyltransferase {ECO:0000256|RuleBase:RU367004}... [more]
A0A2I4H420E-Value: 0.000e+0, PID: 66.96Fucosyltransferase {ECO:0000256|RuleBase:RU367004}... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.