Resource Type:
Polypeptide
Name:
XM_017398208.1
Identifier:
XM_017398208.1-protein
Sequence:
MVLEATMICVDNSEWMRNGDYSPSRFLAQADAVNLICGAKTQSNPENTVG
VLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQIAQLALKH
RQNKKQQQRIIVFVGGPVKYDKKVLEMIGRKLKKNSVALDVVNFGEEDDD
KTEKLQALVSAVNNNDSSHIVHVPAGANALSDVLISTPIFTGDGEGGSGF
AAAAAAAAAGGVSGFDFDVDPNVDPELALALRVSMEEERARQEEAAKKAA
EEGAQTEKTGEQASTSQDVTMAGTAAPTASETENKAVNLMDDENALLQQA
LAMSMDDPAASAIMRDTDMSEAAADDQDLALALQLSVQGGAEDGSSHMDM
SNVLADQTFMSTILSSLPGVDPNDPSVKELLASMQNASEPEHKKDEDNKP
GEEK
Sequence Length:
404
Sequence Checksum:
1f1fbea9096e2eac6c4908e49305fd2e
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017398208.1, derives from mRNA, XM_017398208.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017398208.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017398208.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5BXE5 ((Proteasome subunit Rpn {ECO:0000313|EMBL:PON53458.1}))
HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0
Identity = 323/403 (80.15%), Postives = 358/403 (88.83%), Query Frame = 0
Match: A0A2P5BXE5 ((Proteasome subunit Rpn {ECO:0000313|EMBL:PON53458.1}))
HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0
Identity = 323/403 (80.15%), Postives = 358/403 (88.83%), Query Frame = 0
Query: 1 MVLEATMICVDNSEWMRNGDYSPSRFLAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQIAQLALKHRQNKKQQQRIIVFVGGPVKYDKKVLEMIGRKLKKNSVALDVVNFGEEDDDKTEKLQALVSAVNNNDSSHIVHVPAGANALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFDVDPNVDPELALALRVSMEEERARQEEAAKKAAEEGAQTEKTGEQASTSQDVTMAGTAAPTASETENKAVNLMDDENALLQQALAMSMDDPAASAIMRDTDMSEAAADDQDLALALQLSVQGGAEDGSSHMDMSNVLADQTFMSTILSSLPGVDPNDPSVKELLASMQNASEPEHKKDEDNKPGEE 403
MVLEATMIC+DNSEWMRNGDYSPSR AQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQ+AQLALKHRQNKKQQQRIIVF G P+K++KK+LE IGRKLKKNSVALD+VNFGEEDD KTEKL+AL+++VNNND+SHIVHVP G N LSDVLISTPIFTGDGEG S FAAA AA AAGGVSGFDF VDPN+DPELALALRVSMEEERARQE AAKKA+EE ++ EK GEQ S+SQD TM A AS +KA +L DDENALLQQALAMSMDDP++ ++DTDMSEAAADD DLALALQLSVQ A+D SS+ DMS +LADQ+F+S+IL+SLPGVDPNDPSVK+LLASMQ+ SE + KK+ED +P EE
Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPSRIQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPIKHEKKLLETIGRKLKKNSVALDIVNFGEEDDGKTEKLEALLASVNNNDTSHIVHVPPGPNVLSDVLISTPIFTGDGEGASSFAAATAAVAAGGVSGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKASEESSKQEKEGEQPSSSQDATMTERATAAASGA-DKATDLTDDENALLQQALAMSMDDPSSGQDLQDTDMSEAAADDPDLALALQLSVQDSAKD-SSNQDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQSEGDQKKNEDKEPKEE 401
BLAST of XM_017398208.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LGG7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7135638.1}))
HSP 1 Score: 621.313 bits (1601), Expect = 0.000e+0
Identity = 320/389 (82.26%), Postives = 353/389 (90.75%), Query Frame = 0
Match: A0A834LGG7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7135638.1}))
HSP 1 Score: 621.313 bits (1601), Expect = 0.000e+0
Identity = 320/389 (82.26%), Postives = 353/389 (90.75%), Query Frame = 0
Query: 1 MVLEATMICVDNSEWMRNGDYSPSRFLAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQIAQLALKHRQNKKQQQRIIVFVGGPVKYDKKVLEMIGRKLKKNSVALDVVNFGEEDDDKTEKLQALVSAVNNNDSSHIVHVPAGANALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFDVDPNVDPELALALRVSMEEERARQEEAAKKAAEEGAQTEKTGEQASTSQDVTMAGTAAPTASETENKAVNLMDDENALLQQALAMSMDDPAASAIMRDTDMSEAAADDQDLALALQLSVQGGAEDGSSHMDMSNVLADQTFMSTILSSLPGVDPNDPSVKELLASMQNASE 389
+++ATMICVDNSEWMRNGDYSP+RF AQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLE+GGE NLAAGIQ+AQLALKHRQNKKQQQRIIVFVG PVKYDKKVLEMIGRKLKKNSVALD+VNFGEEDD K EKL+AL++AVNNNDSSHIVHVP+ ++ALSDVLISTPIFTGDGEGGS FAAAAAAAAAGGVSG+DF VDPN+DPELALALRVSMEEERARQE AAKKAAEE ++ EK GEQ S SQD TM + A E+K +LMDDENALLQQALAMSMDDP AS + RDTDMSEAAA+D+DLALALQLSVQ G++D +S DMS +LADQ+F+S+IL+SLPGVDPNDPSVK+LLASMQ+ SE
Sbjct: 27 FLVQATMICVDNSEWMRNGDYSPTRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEVGGECNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPVKYDKKVLEMIGRKLKKNSVALDIVNFGEEDDGKAEKLEALLAAVNNNDSSHIVHVPSDSSALSDVLISTPIFTGDGEGGSSFAAAAAAAAAGGVSGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEEASKQEKGGEQPSASQDATMTENVSAAAPGAEDKTSDLMDDENALLQQALAMSMDDPVASVVTRDTDMSEAAAEDEDLALALQLSVQDGSKDQASQTDMSQLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQSE 415
BLAST of XM_017398208.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0B2PG91 ((26S proteasome non-ATPase regulatory subunit 4 {ECO:0000313|EMBL:KHN08386.1}) (26S proteasome non-ATPase regulatory subunit 4-like isoform A {ECO:0000313|EMBL:RZB60793.1}))
HSP 1 Score: 620.542 bits (1599), Expect = 0.000e+0
Identity = 317/404 (78.47%), Postives = 355/404 (87.87%), Query Frame = 0
Match: A0A0B2PG91 ((26S proteasome non-ATPase regulatory subunit 4 {ECO:0000313|EMBL:KHN08386.1}) (26S proteasome non-ATPase regulatory subunit 4-like isoform A {ECO:0000313|EMBL:RZB60793.1}))
HSP 1 Score: 620.542 bits (1599), Expect = 0.000e+0
Identity = 317/404 (78.47%), Postives = 355/404 (87.87%), Query Frame = 0
Query: 1 MVLEATMICVDNSEWMRNGDYSPSRFLAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQIAQLALKHRQNKKQQQRIIVFVGGPVKYDKKVLEMIGRKLKKNSVALDVVNFGEEDDDKTEKLQALVSAVNNNDSSHIVHVPAGANALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFDVDPNVDPELALALRVSMEEERARQEEAAKKAAEEGAQTEKTGEQASTSQDVTMAGTAAPTASETENKAVNLMDDENALLQQALAMSMDDPAASAIMRDTDMSEAAADDQDLALALQLSVQGGAEDGSSHMDMSNVLADQTFMSTILSSLPGVDPNDPSVKELLASMQNASEPEHKKDEDNKPGEEK 404
MVLEATMIC+DNSEWMRNGDYSPSRF AQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQ+AQLALKHRQNKKQQQRIIVF GGPV ++KK+LEMIGRKLKKNSVALDVVNFGEED+ KTEKL+AL+SAVNNND+SHIVHVP+G NALSDVLISTPIFTGDGEGGSGF AAG VSGF+F VDPN+DPELALALRVSMEEERARQE AAKKAAE+ A+ EK GEQ ++ QD TM + ASE E K +L +ENALLQQALAMSMDDP + MRDTDMSEAAA+D +LALALQLSV+ ++D +S D+S +LADQ+F+S+IL+SLPGVDPNDPSVK+LLAS+QN SEP+ +K+ED P EE+
Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGGPVNHEKKMLEMIGRKLKKNSVALDVVNFGEEDEGKTEKLEALLSAVNNNDTSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGF-------AAGSVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDAAKQEKDGEQQASPQDTTMTEGVSAAASEAETKRTDLTVNENALLQQALAMSMDDPTINHDMRDTDMSEAAAEDPELALALQLSVEDSSKDSASQSDVSKLLADQSFVSSILASLPGVDPNDPSVKDLLASLQNQSEPQ-QKNEDKPPNEEE 396
BLAST of XM_017398208.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4MER3 (VWFA domain-containing protein {ECO:0000259|PROSITE:PS50234} (Fragment))
HSP 1 Score: 619.387 bits (1596), Expect = 0.000e+0
Identity = 332/445 (74.61%), Postives = 363/445 (81.57%), Query Frame = 0
Match: A0A6A4MER3 (VWFA domain-containing protein {ECO:0000259|PROSITE:PS50234} (Fragment))
HSP 1 Score: 619.387 bits (1596), Expect = 0.000e+0
Identity = 332/445 (74.61%), Postives = 363/445 (81.57%), Query Frame = 0
Query: 1 MVLEATMICVDNSEWMRNGDYSPSRFLAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHG-----------------------------------------LEIGGEMNLAAGIQIAQLALKHRQNKKQQQRIIVFVGGPVKYDKKVLEMIGRKLKKNSVALDVVNFGEEDDDKTEKLQALVSAVNNNDSSHIVHVPAGANALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFDVDPNVDPELALALRVSMEEERARQEEAAKKAAEEGAQTEKTGEQASTSQDVTMAGTAAPTASETENKAVNLMDDENALLQQALAMSMDDPAASAIMRDTDMSEAAADDQDLALALQLSVQGGAEDGSSHMDMSNVLADQTFMSTILSSLPGVDPNDPSVKELLASMQNASEPEHKK-DEDNKPGEE 403
MVLEATMICVDNSEWMRNGDYSP+RF AQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHG LE+GGE NLAAGIQ+AQLALKHRQNKKQQQRIIVFVG PVKYDKKVLEMIGRKLKKNSVALD+VNFGEED+ K EKL+AL++AVNNNDSSHIVHVP+ ++ALSDVLISTPIFTGDGEGGS FAAAAAAAAAGGVSGFDF VDPN+DPELALALRVSMEEERARQE AAKKAAEE ++ EK GEQ S SQD TM + A E+K +LMDDENALLQQALAMSMDDP AS + RDTDMSEAAA+D+DLALALQLSVQ G+++ +S DMS +LADQ+F+S+IL+SLPGVDPNDPSVK+LLASMQ+ SE E KK DED P EE
Sbjct: 1 MVLEATMICVDNSEWMRNGDYSPTRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGQLLHLAMLCRLIRIVSYKNDNFSAAMVLFVFARISFCMSSGLEVGGECNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPVKYDKKVLEMIGRKLKKNSVALDIVNFGEEDEGKAEKLEALLAAVNNNDSSHIVHVPSDSSALSDVLISTPIFTGDGEGGSSFAAAAAAAAAGGVSGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEEASKQEKGGEQPSASQDATMTENVSAXAPGAEDKTSDLMDDENALLQQALAMSMDDPVASVVTRDTDMSEAAAEDEDLALALQLSVQDGSKEQASQTDMSQLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQSESEQKKDDEDKAPKEE 445
BLAST of XM_017398208.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: I1MN40 (VWFA domain-containing protein {ECO:0000259|PROSITE:PS50234})
HSP 1 Score: 619.002 bits (1595), Expect = 0.000e+0
Identity = 316/404 (78.22%), Postives = 354/404 (87.62%), Query Frame = 0
Match: I1MN40 (VWFA domain-containing protein {ECO:0000259|PROSITE:PS50234})
HSP 1 Score: 619.002 bits (1595), Expect = 0.000e+0
Identity = 316/404 (78.22%), Postives = 354/404 (87.62%), Query Frame = 0
Query: 1 MVLEATMICVDNSEWMRNGDYSPSRFLAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQIAQLALKHRQNKKQQQRIIVFVGGPVKYDKKVLEMIGRKLKKNSVALDVVNFGEEDDDKTEKLQALVSAVNNNDSSHIVHVPAGANALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFDVDPNVDPELALALRVSMEEERARQEEAAKKAAEEGAQTEKTGEQASTSQDVTMAGTAAPTASETENKAVNLMDDENALLQQALAMSMDDPAASAIMRDTDMSEAAADDQDLALALQLSVQGGAEDGSSHMDMSNVLADQTFMSTILSSLPGVDPNDPSVKELLASMQNASEPEHKKDEDNKPGEEK 404
MVLEATMIC+DNSEWMRNGDYSPSRF AQADA NLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQ+AQLALKHRQNKKQQQRIIVF GGPV ++KK+LEMIGRKLKKNSVALDVVNFGEED+ KTEKL+AL+SAVNNND+SHIVHVP+G NALSDVLISTPIFTGDGEGGSGF AAG VSGF+F VDPN+DPELALALRVSMEEERARQE AAKKAAE+ A+ EK GEQ ++ QD TM + ASE E K +L +ENALLQQALAMSMDDP + MRDTDMSEAAA+D +LALALQLSV+ ++D +S D+S +LADQ+F+S+IL+SLPGVDPNDPSVK+LLAS+QN SEP+ +K+ED P EE+
Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPSRFQAQADAANLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGGPVNHEKKMLEMIGRKLKKNSVALDVVNFGEEDEGKTEKLEALLSAVNNNDTSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGF-------AAGSVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDAAKQEKDGEQQASPQDTTMTKGVSAAASEAETKRTDLTVNENALLQQALAMSMDDPTINHDMRDTDMSEAAAEDPELALALQLSVEDSSKDSASQSDVSKLLADQSFVSSILASLPGVDPNDPSVKDLLASLQNQSEPQ-QKNEDKPPNEEE 396
BLAST of XM_017398208.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A498HYE7 (VWFA domain-containing protein {ECO:0000259|PROSITE:PS50234})
HSP 1 Score: 618.616 bits (1594), Expect = 0.000e+0
Identity = 327/404 (80.94%), Postives = 363/404 (89.85%), Query Frame = 0
Match: A0A498HYE7 (VWFA domain-containing protein {ECO:0000259|PROSITE:PS50234})
HSP 1 Score: 618.616 bits (1594), Expect = 0.000e+0
Identity = 327/404 (80.94%), Postives = 363/404 (89.85%), Query Frame = 0
Query: 1 MVLEATMICVDNSEWMRNGDYSPSRFLAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQIAQLALKHRQNKKQQQRIIVFVGGPVKYDKKVLEMIGRKLKKNSVALDVVNFGEEDDDKTEKLQALVSAVNNNDSSHIVHVPAGANALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFDVDPNVDPELALALRVSMEEERARQEEAAKKAAEEGAQTEKTGEQASTSQDVTMAGTAAPTASETENKAVNLMDDENALLQQALAMSMDDPAASAIMRDTDMSEAAADDQDLALALQLSVQGGAEDGSSHMDMSNVLADQTFMSTILSSLPGVDPNDPSVKELLASMQNASEPEHKKDEDNKPGEEK 404
MVLEATMIC+DNSEWMRNGDY+PSRFLAQADAVNLICGAKTQSNPENTVG+LTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQ+AQLALKHRQNKKQQQRIIVF G VK+DKK+LEMIGRKLKKNSVALD+VNFGEED+ KTEKL+AL++AVNNND+SHIVHVPAG +ALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDF VDPN+DPELALALRVSMEEERARQE AAKKA+E+ A+ EK GE S+SQD TM A+ SE ENK+ + MDDENALLQQALAMSMD+P +S +RDTDMSEA D +LALALQ+SVQ G +D S DMS +LADQ+F+S+IL+SLPGVDPNDPSVK+LLASMQN SEP+ KK+ED P EE+
Sbjct: 81 MVLEATMICIDNSEWMRNGDYAPSRFLAQADAVNLICGAKTQSNPENTVGILTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSTVKHDKKLLEMIGRKLKKNSVALDIVNFGEEDEAKTEKLEALLAAVNNNDTSHIVHVPAGPSALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKASEDVAKQEKGGEGQSSSQDATMTDRASVGTSEAENKSSDFMDDENALLQQALAMSMDEPVSSDDIRDTDMSEAT--DPELALALQMSVQEGEKDSGSEKDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSEPDQKKNEDKPPKEEE 482
BLAST of XM_017398208.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6LZC8 (VWFA domain-containing protein {ECO:0000259|PROSITE:PS50234})
HSP 1 Score: 618.231 bits (1593), Expect = 0.000e+0
Identity = 336/406 (82.76%), Postives = 368/406 (90.64%), Query Frame = 0
Match: A0A2J6LZC8 (VWFA domain-containing protein {ECO:0000259|PROSITE:PS50234})
HSP 1 Score: 618.231 bits (1593), Expect = 0.000e+0
Identity = 336/406 (82.76%), Postives = 368/406 (90.64%), Query Frame = 0
Query: 1 MVLEATMICVDNSEWMRNGDYSPSRFLAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQIAQLALKHRQNKKQQQRIIVFVGGPVKYDKKVLEMIGRKLKKNSVALDVVNFGEEDDDKTEKLQALVSAVNNNDSSHIVHVPAGANALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFDVDPNVDPELALALRVSMEEERARQEEAAKKAAEEGAQTEKTGEQASTSQDVTMAGTAAPTASETENKAVNLMDDENALLQQALAMSMDDPAASAI-MRDTDMSEAAADDQDLALALQLSVQGGAED--GSSHMDMSNVLADQTFMSTILSSLPGVDPNDPSVKELLASMQNASEPEHKKDEDNKPGEE 403
MVLEATMIC+DNSEWMRNGDYSP+RF AQ+DAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQIAQLALKHRQNKKQQQRIIVF GGPVKYDKKVLE+IG+KLKKNSVALDVVNFGEED+ K+EKL+ALV+AVNNNDSSHIVHVPAG+NALSDVL+STPIFTGDGEGGSGFAAAAAAAAAGGVSG+DF VDPN+DPELALALRVSMEEERARQE AAKKAA++ ++ EK GE STSQD TM+ ASE+ENK +LMDDENALLQQALAMSMDDPAA+ + RDTDMSEAAADDQDLALALQLSV+ GA+D GS DM +LADQ+F+S+IL+SLPGVDPNDPSVK+LLASMQN E + KK ED P E+
Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPTRFQAQSDAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQIAQLALKHRQNKKQQQRIIVFAGGPVKYDKKVLELIGKKLKKNSVALDVVNFGEEDESKSEKLEALVAAVNNNDSSHIVHVPAGSNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAAGGVSGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAADDSSKNEKQGE--STSQDATMSEN---VASESENKKDDLMDDENALLQQALAMSMDDPAATTVTTRDTDMSEAAADDQDLALALQLSVEEGAKDGSGSGQADMGKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQPESDQKKKEDKAPKED 401
BLAST of XM_017398208.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6LTD7 (VWFA domain-containing protein {ECO:0000259|PROSITE:PS50234})
HSP 1 Score: 617.076 bits (1590), Expect = 0.000e+0
Identity = 338/403 (83.87%), Postives = 366/403 (90.82%), Query Frame = 0
Match: A0A5N6LTD7 (VWFA domain-containing protein {ECO:0000259|PROSITE:PS50234})
HSP 1 Score: 617.076 bits (1590), Expect = 0.000e+0
Identity = 338/403 (83.87%), Postives = 366/403 (90.82%), Query Frame = 0
Query: 1 MVLEATMICVDNSEWMRNGDYSPSRFLAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQIAQLALKHRQNKKQQQRIIVFVGGPVKYDKKVLEMIGRKLKKNSVALDVVNFGEEDDDKTEKLQALVSAVNNNDSSHIVHVPAGANALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFDVDPNVDPELALALRVSMEEERARQEEAAKKAAEEGAQTEKTGEQASTSQDVTMAGTAAPTASETENKAVNLMDDENALLQQALAMSMDDPAASAIMRDTDMSEAAADDQDLALALQLSVQGGAEDGSSHMDMSNVLADQTFMSTILSSLPGVDPNDPSVKELLASMQNASEPEHKKDEDNKPGEE 403
MVLEATMIC+DNSEWMRNGDYSP+RF AQA+AVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGI +AQLALKHRQNKKQQQRIIVF GGPVKYDKKVLEMIG+KLKKNSVALDVVNFGEED++KTEKL+ALV+AVNNNDSSHIVHVPAG+NALSDVL+STPIFTGDGEGGSGFAAAAAAAAAGGVSGFDF VDPN+DPELALALRVSMEEERARQE AAKKAA++ ++ EK GE STSQD TM+ AA +ASE+ENK +LMDDENALLQQALAMSMDDPA + RDTDMSEAAADDQDLALALQLSVQ A D S DM +LADQ+F+S++L+SLPGVDPNDPSVK+LLASM N SE KKDED P EE
Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPTRFQAQAEAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGILVAQLALKHRQNKKQQQRIIVFAGGPVKYDKKVLEMIGKKLKKNSVALDVVNFGEEDEEKTEKLEALVAAVNNNDSSHIVHVPAGSNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAADDSSKQEK-GE--STSQDATMSENAAASASESENKKDDLMDDENALLQQALAMSMDDPATTVTTRDTDMSEAAADDQDLALALQLSVQEDANDQSGETDMGKLLADQSFVSSVLASLPGVDPNDPSVKDLLASMHNQSE---KKDEDKAPKEE 397
BLAST of XM_017398208.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7SNX7 (VWFA domain-containing protein {ECO:0000259|PROSITE:PS50234})
HSP 1 Score: 615.92 bits (1587), Expect = 0.000e+0
Identity = 334/403 (82.88%), Postives = 363/403 (90.07%), Query Frame = 0
Match: D7SNX7 (VWFA domain-containing protein {ECO:0000259|PROSITE:PS50234})
HSP 1 Score: 615.92 bits (1587), Expect = 0.000e+0
Identity = 334/403 (82.88%), Postives = 363/403 (90.07%), Query Frame = 0
Query: 1 MVLEATMICVDNSEWMRNGDYSPSRFLAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQIAQLALKHRQNKKQQQRIIVFVGGPVKYDKKVLEMIGRKLKKNSVALDVVNFGEEDDDKTEKLQALVSAVNNNDSSHIVHVPAGANALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFDVDPNVDPELALALRVSMEEERARQEEAAKKAAEEGAQTEKTGEQASTSQDVTMAGTAAPTASETENKAVNLMDDENALLQQALAMSMDDPAASAIMRDTDMSEAAADDQDLALALQLSVQGGAEDGSSHMDMSNVLADQTFMSTILSSLPGVDPNDPSVKELLASMQNASEPEHKKDEDNKPGEE 403
MVLEATMIC+DNSEWMRNGDYSP+RF AQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLE+GGEMNLAAGIQ+AQLALKHRQNKKQQQRIIVF G PVKYDKKVLEMIGRKLKKNSVA+D+V+FGE+DD K EKL+AL+ +VNNNDSSHIVHVPAG NALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGV+GFDF VDPN+DPELALALRVSMEEERARQE AAKKAAEE ++ EK GEQ S+SQD TM A AS+ + K+ +LMDDENALLQQALAMSMDDPA S MRDTDMSEAAADDQDLALALQLSVQ +D +S DMS +L DQTF+S+IL+SLPGVDPNDPSVK+LLASMQN SE + KK+ED P EE
Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPTRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEVGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPVKYDKKVLEMIGRKLKKNSVAIDIVDFGEDDDGKPEKLEALLGSVNNNDSSHIVHVPAGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVAGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEEASRQEKEGEQQSSSQDATMTEHANVAASDADKKS-DLMDDENALLQQALAMSMDDPATSLAMRDTDMSEAAADDQDLALALQLSVQDTGKDSTSQTDMSKLLTDQTFVSSILASLPGVDPNDPSVKDLLASMQNESESQQKKNEDKAPDEE 402
BLAST of XM_017398208.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251U5B9 ((Putative 26S proteasome non-ATPase regulatory subunit 4 {ECO:0000313|EMBL:OTG18046.1}))
HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0
Identity = 332/386 (86.01%), Postives = 359/386 (93.01%), Query Frame = 0
Match: A0A251U5B9 ((Putative 26S proteasome non-ATPase regulatory subunit 4 {ECO:0000313|EMBL:OTG18046.1}))
HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0
Identity = 332/386 (86.01%), Postives = 359/386 (93.01%), Query Frame = 0
Query: 1 MVLEATMICVDNSEWMRNGDYSPSRFLAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQIAQLALKHRQNKKQQQRIIVFVGGPVKYDKKVLEMIGRKLKKNSVALDVVNFGEEDDDKTEKLQALVSAVNNNDSSHIVHVPAGANALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFDVDPNVDPELALALRVSMEEERARQEEAAKKAAEEGAQTEKTGEQASTSQDVTMAGTAAPTASETENKAVNLMDDENALLQQALAMSMDDPAASAIMRDTDMSEAAADDQDLALALQLSVQGGAEDGSSHMDMSNVLADQTFMSTILSSLPGVDPNDPSVKELLASMQN 386
MVLEATMIC+DNSEWMRNGDYSP+RF AQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQ+AQLALKHRQNKKQQQRIIVF GGPVKYDKKVLEMIG+KLKKNSVALDVVNFGEED+ KTEKL+ALV+AVNNNDSSHIVHVPAG+NALSDVL+STPIFTGDGEGGSGFAAAAAAAAAGGVSGFDF VDPN+DPELALALRVSMEEERARQE AAKKAA++ ++ EK G ASTSQD TM+ A +ASE+ENK +LMDDENALLQQALAMSMDDPA +A RDTDMSEAAADDQDLALALQLSVQ GA+D S DM +LADQ+F+S++L+SLPGVDPNDPSVK+LLASMQN
Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPTRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGGPVKYDKKVLEMIGKKLKKNSVALDVVNFGEEDEAKTEKLEALVAAVNNNDSSHIVHVPAGSNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAADDSSKQEKEG--ASTSQDATMSENVATSASESENKKDDLMDDENALLQQALAMSMDDPATTATARDTDMSEAAADDQDLALALQLSVQEGAKDQSGETDMGKLLADQSFVSSVLASLPGVDPNDPSVKDLLASMQN 384
| Match Name | Stats | Description |
|---|---|---|
| A0A2P5BXE5 | E-Value: 0.000e+0, PID: 80.15 | (Proteasome subunit Rpn {ECO:0000313|EMBL:PON53458... [more] |
| A0A834LGG7 | E-Value: 0.000e+0, PID: 82.26 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7135... [more] |
| A0A0B2PG91 | E-Value: 0.000e+0, PID: 78.47 | (26S proteasome non-ATPase regulatory subunit 4 {E... [more] |
| A0A6A4MER3 | E-Value: 0.000e+0, PID: 74.61 | VWFA domain-containing protein {ECO:0000259|PROSIT... [more] |
| I1MN40 | E-Value: 0.000e+0, PID: 78.22 | VWFA domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A498HYE7 | E-Value: 0.000e+0, PID: 80.94 | VWFA domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A2J6LZC8 | E-Value: 0.000e+0, PID: 82.76 | VWFA domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A5N6LTD7 | E-Value: 0.000e+0, PID: 83.87 | VWFA domain-containing protein {ECO:0000259|PROSIT... [more] |
| D7SNX7 | E-Value: 0.000e+0, PID: 82.88 | VWFA domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A251U5B9 | E-Value: 0.000e+0, PID: 86.01 | (Putative 26S proteasome non-ATPase regulatory sub... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |