Resource Type:
Polypeptide
Name:
XM_017395800.1
Identifier:
XM_017395800.1-protein
Sequence:
MGSCFSTKKITGSSSNTTNTNTHVKKPASSATSTSATTKLTYRNNNNKNK
NKNDNDHRNQQLIRHRDKASSRKQNGVIPCGKRTDFGYDKDFDLRYSIGK
LLGHGQFGYTYVAVDRSNGDRVAVKKIDKNKMILPIAVEDVKREVRILKA
LSGHENVVQFYNAFEDDSYVYIAMELCEGGELLDRILAKKSSRYTEKDAA
RVVRQMLKVAAECHLHGLVHRDMKPENFLFKSPKDDSALKATDFGLSDFI
RPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWD
KTEDGIFKEVLRNKPDFRRKPWPTISNGAKDFVKKLLVKEPRARYTAAQA
LSHPWVREGGNALEIPLDISVLYNMRQFVKYSRLKQFALRALASTLDEEE
LADLRDQFHAIDVDKNGAISLEEMRQALAKDIPWKVKESRVLEILQAMDS
NTDGLVDFHEFVAATLHVHQLEEHNSEKWQQISHAAFEKFDVDKDGYITA
EELKMHTGLRGSIDPLLEEADIDKDGKISLSEFRKLLRTASMGTRNVNSP
AAHRGSRRQ
Sequence Length:
559
Sequence Checksum:
6eb6b8150f03d6eb2c578a3f1f594035
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017395800.1, derives from mRNA, XM_017395800.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017395800.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017395800.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2Z0DVE0 ((Calcium-dependent protein kinase 16-like protein {ECO:0000313|EMBL:AGH25068.1}))
HSP 1 Score: 959.133 bits (2478), Expect = 0.000e+0
Identity = 465/565 (82.30%), Postives = 504/565 (89.20%), Query Frame = 0
Match: A0A2Z0DVE0 ((Calcium-dependent protein kinase 16-like protein {ECO:0000313|EMBL:AGH25068.1}))
HSP 1 Score: 959.133 bits (2478), Expect = 0.000e+0
Identity = 465/565 (82.30%), Postives = 504/565 (89.20%), Query Frame = 0
Query: 1 MGSCFSTKKITGSSSNTT-------NTNTHVKKPASSATSTSATTKLTYRNNNNKNKNKNDNDHRNQQLIRHRDKASSRKQNGVIPCGKRTDFGYDKDFDLRYSIGKLLGHGQFGYTYVAVDRSNGDRVAVKKIDKNKMILPIAVEDVKREVRILKALSGHENVVQFYNAFEDDSYVYIAMELCEGGELLDRILAKKSSRYTEKDAARVVRQMLKVAAECHLHGLVHRDMKPENFLFKSPKDDSALKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNGAKDFVKKLLVKEPRARYTAAQALSHPWVREGGNALEIPLDISVLYNMRQFVKYSRLKQFALRALASTLDEEELADLRDQFHAIDVDKNGAISLEEMRQALAKDIPWKVKESRVLEILQAMDSNTDGLVDFHEFVAATLHVHQLEEHNSEKWQQISHAAFEKFDVDKDGYITAEELKMHTGLRGSIDPLLEEADIDKDGKISLSEFRKLLRTASMGTRNVNSPAAHRGSRR 558
MGSCFS+ K++GS+SN T N KP S+ +TS T+K + + NKN RN Q I+ K SSR+Q GVIPCGKRTDFGYDKDFD +Y+IGKLLGHGQFGYTYVA D+SNGDRVAVK+I+KNKMILPIAVEDVKREV+ILKAL+GHENVVQFYNAFEDDSYVYI MELCEGGELLDRIL+KK SRYTEKDAA +VRQMLKVAAECHLHGLVHRDMKP NFLFKSPK+DS+LKATDFGLSDFIRPGK+ QDIVGSAYYVAPEVLKR+SGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVL+NKPDFRRKPWP+ISN AKDFVKKLLVK+PRAR TAAQALSHPWVREGG+A EIPLDISVL NMRQFVKYSRLKQFALRALASTL EEELADLRDQF AIDVDKNG+ISLEEMRQALAKD+PWK+K+SRVLEILQA+DSNTDGLVDF EFVAATLHVHQLEEH+SEKWQQ S AAFEKFDVDKDGYIT +ELKMHTGL+GSIDPLLEEADIDKDGKISLSEFR+LLRTASM +R V+SP RGSRR
Sbjct: 1 MGSCFSSTKVSGSNSNNTQSANNGGNNRKTTTKPPPSSANTSVTSKFGGSHFKGRESNKNHQHQRNPQQIK---KPSSRRQGGVIPCGKRTDFGYDKDFDKKYTIGKLLGHGQFGYTYVATDKSNGDRVAVKRIEKNKMILPIAVEDVKREVKILKALAGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILSKKDSRYTEKDAAIIVRQMLKVAAECHLHGLVHRDMKPGNFLFKSPKEDSSLKATDFGLSDFIRPGKRLQDIVGSAYYVAPEVLKRRSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLKNKPDFRRKPWPSISNSAKDFVKKLLVKDPRARLTAAQALSHPWVREGGDASEIPLDISVLNNMRQFVKYSRLKQFALRALASTLGEEELADLRDQFDAIDVDKNGSISLEEMRQALAKDLPWKMKDSRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHSSEKWQQRSQAAFEKFDVDKDGYITPDELKMHTGLKGSIDPLLEEADIDKDGKISLSEFRRLLRTASMSSRAVSSPTV-RGSRR 561
BLAST of XM_017395800.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6T6V1 ((calcium-dependent protein kinase 18-like {ECO:0000313|RefSeq:XP_027073712.1, ECO:0000313|RefSeq:XP_027077515.1}))
HSP 1 Score: 947.962 bits (2449), Expect = 0.000e+0
Identity = 462/566 (81.63%), Postives = 501/566 (88.52%), Query Frame = 0
Match: A0A6P6T6V1 ((calcium-dependent protein kinase 18-like {ECO:0000313|RefSeq:XP_027073712.1, ECO:0000313|RefSeq:XP_027077515.1}))
HSP 1 Score: 947.962 bits (2449), Expect = 0.000e+0
Identity = 462/566 (81.63%), Postives = 501/566 (88.52%), Query Frame = 0
Query: 1 MGSCFSTKKITGSSSNTTNTNTHVKKPASSATSTSATTKLTYRNNNNKNKN-----KNDNDHRNQQLIRHRD---KASSRKQNGVIPCGKRTDFGYDKDFDLRYSIGKLLGHGQFGYTYVAVDRSNGDRVAVKKIDKNKMILPIAVEDVKREVRILKALSGHENVVQFYNAFEDDSYVYIAMELCEGGELLDRILAKKSSRYTEKDAARVVRQMLKVAAECHLHGLVHRDMKPENFLFKSPKDDSALKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNGAKDFVKKLLVKEPRARYTAAQALSHPWVREGGNALEIPLDISVLYNMRQFVKYSRLKQFALRALASTLDEEELADLRDQFHAIDVDKNGAISLEEMRQALAKDIPWKVKESRVLEILQAMDSNTDGLVDFHEFVAATLHVHQLEEHNSEKWQQISHAAFEKFDVDKDGYITAEELKMHTGLRGSIDPLLEEADIDKDGKISLSEFRKLLRTASMGTRNVNSPAAHRGSRR 558
MGSCFST K++GS+SNT T T +T T NN+ +K K H NQQ ++ + K SSR+Q GVIPCGKRTDFGYDKDFD RY++GKLLGHGQFGYTYV D+SNGDRVAVK+I+KNKM+LPIAVEDVKREVRILKAL+GHENVVQFYNAFEDDSYVYI MELCEGGELLDRIL+KK SRYTEKDAA VVRQMLKVAAECHLHGLVHRDMKPENFLFKSPK DS+LKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKR+SGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWP+ISN A+DFVKKLLVK+PRAR TAAQALSHPWVREGG+A EIP+DISVL NMRQFVKYSRLKQFALRALASTLDEEELADLRDQFHAIDVDKNG+ISLEEMRQALAKD+PWK+K+SRVLEILQA+DSN DGLVDF EFVAATLHVHQLEEHNSEKWQQ S AAF+KFDVDKDGYIT +ELKMHTGLRGSIDPLLEEADIDKDGKISL+EFR+LLRTASM +R V+SP ++ R+
Sbjct: 1 MGSCFSTTKVSGSNSNTPTTTTTTTVSHQQQNRKVSTKATTSGNNSVASKEQELHYKGKGSHPNQQKQKNTEQGKKPSSRRQGGVIPCGKRTDFGYDKDFDRRYTLGKLLGHGQFGYTYVGTDKSNGDRVAVKRIEKNKMVLPIAVEDVKREVRILKALAGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILSKKDSRYTEKDAAIVVRQMLKVAAECHLHGLVHRDMKPENFLFKSPKVDSSLKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRRSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPSISNSARDFVKKLLVKDPRARLTAAQALSHPWVREGGDASEIPVDISVLSNMRQFVKYSRLKQFALRALASTLDEEELADLRDQFHAIDVDKNGSISLEEMRQALAKDLPWKMKDSRVLEILQAVDSNADGLVDFSEFVAATLHVHQLEEHNSEKWQQRSQAAFDKFDVDKDGYITPDELKMHTGLRGSIDPLLEEADIDKDGKISLAEFRRLLRTASMSSRVVSSPTVNKVPRK 566
BLAST of XM_017395800.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UHY3 ((calcium-dependent protein kinase 18-like {ECO:0000313|RefSeq:XP_011099853.1, ECO:0000313|RefSeq:XP_011099854.1}))
HSP 1 Score: 947.577 bits (2448), Expect = 0.000e+0
Identity = 457/566 (80.74%), Postives = 501/566 (88.52%), Query Frame = 0
Match: A0A6I9UHY3 ((calcium-dependent protein kinase 18-like {ECO:0000313|RefSeq:XP_011099853.1, ECO:0000313|RefSeq:XP_011099854.1}))
HSP 1 Score: 947.577 bits (2448), Expect = 0.000e+0
Identity = 457/566 (80.74%), Postives = 501/566 (88.52%), Query Frame = 0
Query: 1 MGSCFSTKKITGSSSN-----TTNTNTHVKKPASSATSTSATTKLTYRNNNNKNKNKNDNDH---RNQQLIRHRDKASSRKQNGVIPCGKRTDFGYDKDFDLRYSIGKLLGHGQFGYTYVAVDRSNGDRVAVKKIDKNKMILPIAVEDVKREVRILKALSGHENVVQFYNAFEDDSYVYIAMELCEGGELLDRILAKKSSRYTEKDAARVVRQMLKVAAECHLHGLVHRDMKPENFLFKSPKDDSALKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNGAKDFVKKLLVKEPRARYTAAQALSHPWVREGGNALEIPLDISVLYNMRQFVKYSRLKQFALRALASTLDEEELADLRDQFHAIDVDKNGAISLEEMRQALAKDIPWKVKESRVLEILQAMDSNTDGLVDFHEFVAATLHVHQLEEHNSEKWQQISHAAFEKFDVDKDGYITAEELKMHTGLRGSIDPLLEEADIDKDGKISLSEFRKLLRTASMGTRNVNSPAAHRGSRR 558
MGSCFST K++G++ N TT N H ++A+ AT + NN K + N H ++QQ+I++ SS+K +GVIPCGKRTDFGYDKDFD RY+IGKLLGHGQFGYTYVA+D+SNGDRVAVK+I+KNKM+LPIAVEDVKREV+ILKAL+GHENVV FYNAFEDDSYVYI MELCEGGELLDRIL+KK SRYTEKDAA VVRQMLKVAAECHLHG VHRDMKPENFLFKSPK+DS LKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWP ISN AKDFVKKLL+K+PRAR TAAQALSHPWVREGG A EIPLDISVL NMRQFVKYSR KQFALRALASTLD+EELADLRDQF AIDVDKNG ISLEEMRQA+ KD+PWK+K+SRV+EILQA+DSNTDGLVDF EFVAATLHVHQLEEHNSEKWQQ S AAFEKFDVD+DG+IT EELK+HT LRGSIDPLLEEAD+DKDG+ISLSEFR+LLRTASM +R VNSPAA RG+ +
Sbjct: 1 MGSCFSTTKVSGANGNAPSITTTAVNFHFGNRRAAASKPGATKQDVPPNNPQKTRENNKTQHPQKQSQQVIKN----SSKKPSGVIPCGKRTDFGYDKDFDKRYTIGKLLGHGQFGYTYVAIDKSNGDRVAVKRIEKNKMVLPIAVEDVKREVKILKALAGHENVVHFYNAFEDDSYVYIVMELCEGGELLDRILSKKDSRYTEKDAAIVVRQMLKVAAECHLHGFVHRDMKPENFLFKSPKEDSPLKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPGISNAAKDFVKKLLMKDPRARLTAAQALSHPWVREGGEASEIPLDISVLNNMRQFVKYSRFKQFALRALASTLDDEELADLRDQFDAIDVDKNGVISLEEMRQAMEKDLPWKMKDSRVVEILQAIDSNTDGLVDFSEFVAATLHVHQLEEHNSEKWQQRSQAAFEKFDVDRDGFITPEELKLHTCLRGSIDPLLEEADLDKDGRISLSEFRRLLRTASMSSRGVNSPAARRGANK 562
BLAST of XM_017395800.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2Z7C1M6 ((Calcium-dependent protein kinase 16-like {ECO:0000313|EMBL:KZV40794.1}))
HSP 1 Score: 940.258 bits (2429), Expect = 0.000e+0
Identity = 456/569 (80.14%), Postives = 500/569 (87.87%), Query Frame = 0
Match: A0A2Z7C1M6 ((Calcium-dependent protein kinase 16-like {ECO:0000313|EMBL:KZV40794.1}))
HSP 1 Score: 940.258 bits (2429), Expect = 0.000e+0
Identity = 456/569 (80.14%), Postives = 500/569 (87.87%), Query Frame = 0
Query: 1 MGSCFSTKKITGSSSNTTNTN-----------THVKKPASSATSTSATTKLTYRNNNNKNKNKNDNDHRNQQL--IRHRDKASSRKQNGVIPCGKRTDFGYDKDFDLRYSIGKLLGHGQFGYTYVAVDRSNGDRVAVKKIDKNKMILPIAVEDVKREVRILKALSGHENVVQFYNAFEDDSYVYIAMELCEGGELLDRILAKKSSRYTEKDAARVVRQMLKVAAECHLHGLVHRDMKPENFLFKSPKDDSALKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNGAKDFVKKLLVKEPRARYTAAQALSHPWVREGGNALEIPLDISVLYNMRQFVKYSRLKQFALRALASTLDEEELADLRDQFHAIDVDKNGAISLEEMRQALAKDIPWKVKESRVLEILQAMDSNTDGLVDFHEFVAATLHVHQLEEHNSEKWQQISHAAFEKFDVDKDGYITAEELKMHTGLRGSIDPLLEEADIDKDGKISLSEFRKLLRTASMGTRNVNSPAAHRGS 556
MGSCFST K++GS+SNT +T T KP S+ ST+A + + N K ++HRNQQ + K+ S KQ+GVIPCGKRTDFGYDKDFD RY+IGKLLGHGQFGYTY A+D+SNGDRVAVK+I+K KM+LPIAVEDVKREV+ILKAL+GHENVVQFYNAFEDDSYVYI MELCEGGELLDRIL+KK SRYTEKDAA +VRQMLKVAAECHLHG+VHRDMKPENFLFKSPK+DS LKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISN AKDFVKK+LVK+PRAR TAAQALSHPWVREGG A EIPLDISVL +MRQFV YSRLKQFALRALASTLDEEE+ADLRDQF AID+DK+GAISLEEMRQALAKD+PWK+K+SRVLEILQA+DSNTDGLVDF EFVAATLHVHQLEEHNSEKWQQ S AAFEKFDVD DG+IT +EL+MHT LR S+DPLLEEADIDKDGKISLSEFR+LLR ASM +R V SP+A++ S
Sbjct: 1 MGSCFSTSKVSGSNSNTPSTTVAAAANNQRHPTAATKPQSATPSTAAPGN---KEGSRYNHRKTKDNHRNQQQRPSQQVHKSGSIKQSGVIPCGKRTDFGYDKDFDARYTIGKLLGHGQFGYTYAAIDKSNGDRVAVKRIEKKKMVLPIAVEDVKREVKILKALTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILSKKDSRYTEKDAAIIVRQMLKVAAECHLHGMVHRDMKPENFLFKSPKEDSHLKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVKKILVKDPRARLTAAQALSHPWVREGGEASEIPLDISVLSSMRQFVNYSRLKQFALRALASTLDEEEIADLRDQFDAIDMDKSGAISLEEMRQALAKDLPWKMKDSRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHNSEKWQQRSRAAFEKFDVDGDGFITPDELRMHTCLRSSVDPLLEEADIDKDGKISLSEFRRLLRNASMNSRGVTSPSANQHS 566
BLAST of XM_017395800.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q252 ((Calcium-dependent protein kinase {ECO:0000313|EMBL:PSS00478.1}))
HSP 1 Score: 939.488 bits (2427), Expect = 0.000e+0
Identity = 461/564 (81.74%), Postives = 501/564 (88.83%), Query Frame = 0
Match: A0A2R6Q252 ((Calcium-dependent protein kinase {ECO:0000313|EMBL:PSS00478.1}))
HSP 1 Score: 939.488 bits (2427), Expect = 0.000e+0
Identity = 461/564 (81.74%), Postives = 501/564 (88.83%), Query Frame = 0
Query: 1 MGSCFSTKKITGSSSNT-----TNTNTHVKKPASSATSTSATTKLTYRNNNNKNKNKNDNDHRNQQLIRHRDKASSRKQNGVIPCGKRTDFGYDKDFDLRYSIGKLLGHGQFGYTYVAVDRSNGDRVAVKKIDKNKMILPIAVEDVKREVRILKALSGHENVVQFYNAFEDDSYVYIAMELCEGGELLDRILAKKSSRYTEKDAARVVRQMLKVAAECHLHGLVHRDMKPENFLFKSPKDDSALKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNGAKDFVKKLLVKEPRARYTAAQALSHPWVREGGNALEIPLDISVLYNMRQFVKYSRLKQFALRALASTLDEEELADLRDQFHAIDVDKNGAISLEEMRQALAKDIPWKVKESRVLEILQAMDSNTDGLVDFHEFVAATLHVHQLEEHNSEKWQQISHAAFEKFDVDKDGYITAEELKMHTGLRGSIDPLLEEADIDKDGKISLSEFRKLLRTASM-GTRNVNSPAAHRGSRR 558
MGSCFST K+TGS+SNT N H K+ A ++ +AT R+ ++ N K N QQ + KA ++Q GVIPCGKRTDFGY KDFD RY+IGKLLGHGQFGYTYVA D+SNGDRVAVK+I+KNKMILPIAVEDVKREV+IL+AL+GHENVVQFYNAF+DDSYVYI MELCEGGELLDRIL+KK SRY+EKDAA VVRQMLKVAAECHLHGLVHRDMKPENFLFKSPK+DS LKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKR+SGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISN AKDFVKKLLVK+PRAR TAAQALSHPWVREGG+A EIPLDI VL NMR+FVKYSRLKQFALRALASTLDEEEL+DL+DQF AIDVDKNGAISLEEMRQALAKD+PW++KESRVLEILQA+DSNTDGLVDF EFVAAT+HVHQLEEHNSEKW Q S AAFEKFDVD+DGYITAEEL+MHT L+GS+DPLLEEADIDKDGKISL EFRKLLRTASM +RNVNSP AHR R+
Sbjct: 1 MGSCFSTSKVTGSNSNTHPAAGVTGNRHRKEGAKQQSTATATATGKNRDGSHYNHQKR-NSQPQQQRNSQQSKA--KRQGGVIPCGKRTDFGYAKDFDKRYTIGKLLGHGQFGYTYVATDKSNGDRVAVKRIEKNKMILPIAVEDVKREVKILQALAGHENVVQFYNAFDDDSYVYIVMELCEGGELLDRILSKKDSRYSEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSPKEDSHLKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRRSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNSAKDFVKKLLVKDPRARLTAAQALSHPWVREGGDASEIPLDILVLSNMRRFVKYSRLKQFALRALASTLDEEELSDLKDQFDAIDVDKNGAISLEEMRQALAKDLPWRLKESRVLEILQAIDSNTDGLVDFTEFVAATVHVHQLEEHNSEKWNQRSQAAFEKFDVDRDGYITAEELRMHTALKGSLDPLLEEADIDKDGKISLLEFRKLLRTASMSSSRNVNSPVAHRNPRK 561
BLAST of XM_017395800.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5A7RDZ1 ((Calcium-dependent protein kinase {ECO:0000313|EMBL:GER54644.1}))
HSP 1 Score: 938.717 bits (2425), Expect = 0.000e+0
Identity = 456/566 (80.57%), Postives = 504/566 (89.05%), Query Frame = 0
Match: A0A5A7RDZ1 ((Calcium-dependent protein kinase {ECO:0000313|EMBL:GER54644.1}))
HSP 1 Score: 938.717 bits (2425), Expect = 0.000e+0
Identity = 456/566 (80.57%), Postives = 504/566 (89.05%), Query Frame = 0
Query: 1 MGSCFSTKKITGSSSN---TTNTNTHVKKPASSATST-----SATTKLTYRNNNNKNKNKNDNDHRNQQLIRHRDKASSRKQNGVIPCGKRTDFGYDKDFDLRYSIGKLLGHGQFGYTYVAVDRSNGDRVAVKKIDKNKMILPIAVEDVKREVRILKALSGHENVVQFYNAFEDDSYVYIAMELCEGGELLDRILAKKSSRYTEKDAARVVRQMLKVAAECHLHGLVHRDMKPENFLFKSPKDDSALKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNGAKDFVKKLLVKEPRARYTAAQALSHPWVREGGNALEIPLDISVLYNMRQFVKYSRLKQFALRALASTLDEEELADLRDQFHAIDVDKNGAISLEEMRQALAKDIPWKVKESRVLEILQAMDSNTDGLVDFHEFVAATLHVHQLEEHNSEKWQQISHAAFEKFDVDKDGYITAEELKM--HTGLRGSIDPLLEEADIDKDGKISLSEFRKLLRTASMGTRNVNSPAAHRGS 556
MG+CFST K+ GS SN TT N ++ ++++T+T + T+K ++N +N +N+ DH++Q+ +H K +S+K +GVIPCGKRTDFGYDKDF RY+IGKLLGHGQFGYTYVA+D+SN DRVAVK+I+KNKM+LPIAVEDVKREV+ILKAL+GHENVV FYNAFEDDSYVYI MELCEGGELLDRIL+KK SRYTEKDAA VVRQMLKVAAECHLHG VHRDMKPENFLFKS K+DS LKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWP ISN AKDFVKKLL+K+PRAR TAAQALSHPWVREGG A EIPLDISVL NMRQFVKYSR KQFALRALASTLDEEEL++LRDQF AIDVDKNGAISLEEMRQAL KD+PWK+K+SRV+EILQA+DSNTDGLVDF EFVAATLHVHQLEEHNSEKWQQ S AAFEKFDVD+DG+IT EELKM HTGLRGSIDPLLEEADIDKDGKISLSEFR+LLRTAS+ +R V SP A RG+
Sbjct: 1 MGTCFSTIKVCGSGSNNPPTTANNPKNRRSSAASTATYGNSSTTTSKKQEGSHNRQNPRENNKDHQHQKQSQHVIKNTSKKSSGVIPCGKRTDFGYDKDFHTRYTIGKLLGHGQFGYTYVAIDKSNEDRVAVKRIEKNKMVLPIAVEDVKREVKILKALAGHENVVHFYNAFEDDSYVYIVMELCEGGELLDRILSKKDSRYTEKDAAIVVRQMLKVAAECHLHGFVHRDMKPENFLFKSAKEDSPLKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPGISNAAKDFVKKLLMKDPRARLTAAQALSHPWVREGGEASEIPLDISVLSNMRQFVKYSRFKQFALRALASTLDEEELSNLRDQFDAIDVDKNGAISLEEMRQALEKDLPWKMKDSRVVEILQAIDSNTDGLVDFSEFVAATLHVHQLEEHNSEKWQQRSQAAFEKFDVDRDGFITPEELKMVRHTGLRGSIDPLLEEADIDKDGKISLSEFRRLLRTASLSSRGVKSPTA-RGA 565
BLAST of XM_017395800.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9GUE5 ((Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily {ECO:0000313|EMBL:PIN08903.1}) (2.7.11.1 {ECO:0000313|EMBL:PIN08903.1}))
HSP 1 Score: 937.947 bits (2423), Expect = 0.000e+0
Identity = 457/567 (80.60%), Postives = 502/567 (88.54%), Query Frame = 0
Match: A0A2G9GUE5 ((Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily {ECO:0000313|EMBL:PIN08903.1}) (2.7.11.1 {ECO:0000313|EMBL:PIN08903.1}))
HSP 1 Score: 937.947 bits (2423), Expect = 0.000e+0
Identity = 457/567 (80.60%), Postives = 502/567 (88.54%), Query Frame = 0
Query: 1 MGSCFSTKKITGSSSN--TTNTNTHVKKPASSATSTSATTKLTY----RNNNNKNKNKNDNDHRNQQLIRHRD---KASSRKQNGVIPCGKRTDFGYDKDFDLRYSIGKLLGHGQFGYTYVAVDRSNGDRVAVKKIDKNKMILPIAVEDVKREVRILKALSGHENVVQFYNAFEDDSYVYIAMELCEGGELLDRILAKKSSRYTEKDAARVVRQMLKVAAECHLHGLVHRDMKPENFLFKSPKDDSALKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNGAKDFVKKLLVKEPRARYTAAQALSHPWVREGGNALEIPLDISVLYNMRQFVKYSRLKQFALRALASTLDEEELADLRDQFHAIDVDKNGAISLEEMRQALAKDIPWKVKESRVLEILQAMDSNTDGLVDFHEFVAATLHVHQLEEHNSEKWQQISHAAFEKFDVDKDGYITAEELKMHTGLRGSIDPLLEEADIDKDGKISLSEFRKLLRTASMGTRNVNSPAAHRGSRR 558
MGSCFST K+ GS+SN +T+ + H + +S+A+ ATT T + ++ N +K +H+NQQ +H K SS++ GVIPCGKRTDFGYDKDFD RY+IGKLLGHGQFGYTYVA+D+SNGDRVAVK+I+KNKM+LPIAVEDVKREV+ILKAL+GHENVV FYNAFEDDSYVYI MELCEGGELLDRIL+KK SRYTEKDAA VVRQMLKVAAECHLHG VHRDMKPENFLFKSPK DS LKATDFGLSD IRPG+KFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWP ISN AKDFVKKLL+K+PRAR TAAQALSHPWVREGG A EIPLDISVL NMRQFVKYSR KQFALRALASTLDEEELADLRDQF AIDVDKNG ISLEEMRQAL KD+PWK+K+SRV+EILQA+DSNTDGLVDF EFVAATLHVHQLEE+NSEKWQQ S AFEKFDVD+DG+IT EELKMHTGLRGSIDPLLEEADIDKDG+ISLSEFR+LLRTASM +R VNSP+ +R + +
Sbjct: 1 MGSCFSTSKVCGSNSNAPSTSGSHHQNRRSSAASKLPATTSSTVTGKKQEGSHNNHHKAKENHKNQQQQKHSQQIIKNSSKRPTGVIPCGKRTDFGYDKDFDKRYTIGKLLGHGQFGYTYVAIDKSNGDRVAVKRIEKNKMLLPIAVEDVKREVKILKALAGHENVVHFYNAFEDDSYVYIVMELCEGGELLDRILSKKDSRYTEKDAAIVVRQMLKVAAECHLHGFVHRDMKPENFLFKSPKVDSPLKATDFGLSDVIRPGRKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPQISNAAKDFVKKLLIKDPRARLTAAQALSHPWVREGGEASEIPLDISVLSNMRQFVKYSRFKQFALRALASTLDEEELADLRDQFDAIDVDKNGVISLEEMRQALEKDLPWKMKDSRVVEILQAIDSNTDGLVDFSEFVAATLHVHQLEEYNSEKWQQRSQTAFEKFDVDRDGFITPEELKMHTGLRGSIDPLLEEADIDKDGRISLSEFRRLLRTASMSSRGVNSPSGYRAAHK 567
BLAST of XM_017395800.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6MCM3 ((Uncharacterized protein {ECO:0000313|EMBL:PLY97329.1}))
HSP 1 Score: 936.406 bits (2419), Expect = 0.000e+0
Identity = 467/573 (81.50%), Postives = 508/573 (88.66%), Query Frame = 0
Match: A0A2J6MCM3 ((Uncharacterized protein {ECO:0000313|EMBL:PLY97329.1}))
HSP 1 Score: 936.406 bits (2419), Expect = 0.000e+0
Identity = 467/573 (81.50%), Postives = 508/573 (88.66%), Query Frame = 0
Query: 1 MGSCFSTKKITGSSSNTTN----------TNTHVKKPASSATSTSATTKLTYRNNNNKNKNKNDNDHRNQQ-----LIRHRDKASSRKQNGVIPCGKRTDFGYDKDFDLRYSIGKLLGHGQFGYTYVAVDRSNGDRVAVKKIDKNKMILPIAVEDVKREVRILKALSGHENVVQFYNAFEDDSYVYIAMELCEGGELLDRILAKKSSRYTEKDAARVVRQMLKVAAECHLHGLVHRDMKPENFLFKSPKDDSALKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNGAKDFVKKLLVKEPRARYTAAQALSHPWVREGGNALEIPLDISVLYNMRQFVKYSRLKQFALRALASTLDEEELADLRDQFHAIDVDKNGAISLEEMRQALAKDIPWKVKESRVLEILQAMDSNTDGLVDFHEFVAATLHVHQLEEHNSEKWQQISHAAFEKFDVDKDGYITAEELKMHTGLRGSIDPLLEEADIDKDGKISLSEFRKLLRTASMGTRNVNSPAAHRGSRR 558
MGSCFS+ KI+GS+SN + +N V + T+T+A K +N N +K + RNQQ + ++KA+SR+QNGVI CGKRTDFGY KDFD RYSIGKLLGHGQFGYTYVA D++NGDRVAVKKIDKNKMILPIAVEDVKREVRIL+ALSGHENVVQFYNAFEDDSYVYIAMELCEGGELLDRIL+KK SRYTEKDAA VVRQMLKVAA+CHLHGLVHRDMKPENFLFKSPK+DS LKATDFGLSDFIRPGKKF DIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTIS A+DFVKKLLVK+PRAR TAAQALSHPWVREGGNA IPLDISVL NMRQFV+YSRLKQFALRALASTLDEEEL+DL+DQFHAID+DK+GAISLEEMRQALAKD+PWK+KESRVLEIL+A+DSNTDGLVDF EFVAATLHVHQLEEHNSEKWQQ+S AAFEKFDVDKDGYIT EELKM+TGLRGSIDP+LEEADIDKDGKISLSEFR+LLRTAS+ + N+ SPA HRG R+
Sbjct: 1 MGSCFSSSKISGSNSNAPSTTATTTTTTTSNAVVNQHPHRRTATTAANKHD-GGGSNWNPHKTKENSRNQQQGSNNKNKMKNKATSRRQNGVISCGKRTDFGYLKDFDQRYSIGKLLGHGQFGYTYVATDKANGDRVAVKKIDKNKMILPIAVEDVKREVRILQALSGHENVVQFYNAFEDDSYVYIAMELCEGGELLDRILSKKDSRYTEKDAAIVVRQMLKVAAQCHLHGLVHRDMKPENFLFKSPKEDSHLKATDFGLSDFIRPGKKFTDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISTSARDFVKKLLVKDPRARLTAAQALSHPWVREGGNASGIPLDISVLSNMRQFVRYSRLKQFALRALASTLDEEELSDLKDQFHAIDIDKSGAISLEEMRQALAKDLPWKMKESRVLEILEAIDSNTDGLVDFTEFVAATLHVHQLEEHNSEKWQQLSQAAFEKFDVDKDGYITPEELKMYTGLRGSIDPILEEADIDKDGKISLSEFRRLLRTASLSSNNIPSPAPHRGLRK 572
BLAST of XM_017395800.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7N1B2 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4094346.1}))
HSP 1 Score: 935.636 bits (2417), Expect = 0.000e+0
Identity = 466/572 (81.47%), Postives = 508/572 (88.81%), Query Frame = 0
Match: A0A6S7N1B2 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4094346.1}))
HSP 1 Score: 935.636 bits (2417), Expect = 0.000e+0
Identity = 466/572 (81.47%), Postives = 508/572 (88.81%), Query Frame = 0
Query: 1 MGSCFSTKKITGSSSNTTN---------TNTHVKKPASSATSTSATTKLTYRNNNNKNKNKNDNDHRNQQ-----LIRHRDKASSRKQNGVIPCGKRTDFGYDKDFDLRYSIGKLLGHGQFGYTYVAVDRSNGDRVAVKKIDKNKMILPIAVEDVKREVRILKALSGHENVVQFYNAFEDDSYVYIAMELCEGGELLDRILAKKSSRYTEKDAARVVRQMLKVAAECHLHGLVHRDMKPENFLFKSPKDDSALKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNGAKDFVKKLLVKEPRARYTAAQALSHPWVREGGNALEIPLDISVLYNMRQFVKYSRLKQFALRALASTLDEEELADLRDQFHAIDVDKNGAISLEEMRQALAKDIPWKVKESRVLEILQAMDSNTDGLVDFHEFVAATLHVHQLEEHNSEKWQQISHAAFEKFDVDKDGYITAEELKMHTGLRGSIDPLLEEADIDKDGKISLSEFRKLLRTASMGTRNVNSPAAHRGSRR 558
MGSCFS+ KI+GS+SN + +N V + T+T+A + +N N +K + RNQQ + ++KA+SR+QNGVI CGKRTDFGY KDFD RYSIGKLLGHGQFGYTYVA D++NGDRVAVKKIDKNKMILPIAVEDVKREVRIL+ALSGHENVVQFYNAFEDDSYVYIAMELCEGGELLDRIL+KK SRYTEKDAA VVRQMLKVAA+CHLHGLVHRDMKPENFLFKSPK+DS LKATDFGLSDFIRPGKKF DIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTIS A+DFVKKLLVK+PRAR TAAQALSHPWVREGGNA IPLDISVL NMRQFV+YSRLKQFALRALASTLDEEEL+DL+DQFHAID+DK+GAISLEEMRQALAKD+PWK+KESRVLEIL+A+DSNTDGLVDF EFVAATLHVHQLEEHNSEKWQQ+S AAFEKFDVDKDGYIT EELKM+TGLRGSIDP+LEEADIDKDGKISLSEFR+LLRTAS+ + N+ SPA HRG R+
Sbjct: 1 MGSCFSSSKISGSNSNAPSTTATTTTTTSNAVVNQHPHRRTATTAANRHD-GGGSNWNPHKTKENSRNQQQGSNNKNKMKNKATSRRQNGVISCGKRTDFGYLKDFDQRYSIGKLLGHGQFGYTYVATDKANGDRVAVKKIDKNKMILPIAVEDVKREVRILQALSGHENVVQFYNAFEDDSYVYIAMELCEGGELLDRILSKKDSRYTEKDAAIVVRQMLKVAAQCHLHGLVHRDMKPENFLFKSPKEDSHLKATDFGLSDFIRPGKKFTDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISTSARDFVKKLLVKDPRARLTAAQALSHPWVREGGNASGIPLDISVLSNMRQFVRYSRLKQFALRALASTLDEEELSDLKDQFHAIDIDKSGAISLEEMRQALAKDLPWKMKESRVLEILEAIDSNTDGLVDFTEFVAATLHVHQLEEHNSEKWQQLSQAAFEKFDVDKDGYITPEELKMYTGLRGSIDPILEEADIDKDGKISLSEFRRLLRTASLSSNNIPSPAPHRGLRK 571
BLAST of XM_017395800.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4E3E1 ((Full=PREDICTED: calcium-dependent {ECO:0000313|EMBL:VVA09882.1}))
HSP 1 Score: 932.554 bits (2409), Expect = 0.000e+0
Identity = 449/561 (80.04%), Postives = 494/561 (88.06%), Query Frame = 0
Match: A0A5E4E3E1 ((Full=PREDICTED: calcium-dependent {ECO:0000313|EMBL:VVA09882.1}))
HSP 1 Score: 932.554 bits (2409), Expect = 0.000e+0
Identity = 449/561 (80.04%), Postives = 494/561 (88.06%), Query Frame = 0
Query: 1 MGSCFSTKKITGSSSNTTNT---NTHVKKPASSATSTSATTKLTYRNNNNKNKNKNDNDHRNQQLIRHRDKASSRKQNGVIPCGKRTDFGYDKDFDLRYSIGKLLGHGQFGYTYVAVDRSNGDRVAVKKIDKNKMILPIAVEDVKREVRILKALSGHENVVQFYNAFEDDSYVYIAMELCEGGELLDRILAKKSSRYTEKDAARVVRQMLKVAAECHLHGLVHRDMKPENFLFKSPKDDSALKATDFGLSDFIRPGKKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNGAKDFVKKLLVKEPRARYTAAQALSHPWVREGGNALEIPLDISVLYNMRQFVKYSRLKQFALRALASTLDEEELADLRDQFHAIDVDKNGAISLEEMRQALAKDIPWKVKESRVLEILQAMDSNTDGLVDFHEFVAATLHVHQLEEHNSEKWQQISHAAFEKFDVDKDGYITAEELKMHTGLRGSIDPLLEEADIDKDGKISLSEFRKLLRTASMGTRNVNSPAAHRGSRR 558
MG CFST K++GS+SN T N + K+ +S+ ST+ K R N N+ R Q + + K +SR+Q GVIPCGKRTDFGYDK+FD RY+IGKLLGHGQFGYTYVA D++NGDRVAVK+IDKNKMILPIAVEDVKREV+ILK L+GHENVVQFYNAFEDDSYV+I MELCEGGELLDRIL KK SRYTEKDAA VVRQMLKVAAECHLHGLVHRDMKPENFLFKS DS LKATDFGLSDFI+PGKKFQDIVGSAYYVAPEVL+RKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTIS AKDFVKK+LVK+PRAR TAAQALSHPWVREGGNA EIP+DISVL NMRQFV+YSRLKQFALRALASTL+ EEL+DL+DQF AIDVDKNG+ISLEEMRQALAKD+PWK+K+SRVLEIL+A+DSNTDGLVDF EFVAATLHVHQLEEH+SEKWQQ S AAFEKFD+DKDG+IT EELKMHTGLRGSIDPLLEEADIDKDGKISLSEFR+LLRTAS+ ++ V SP R +R+
Sbjct: 1 MGGCFSTVKVSGSNSNNTTAPTANHNRKQSTASSQSTTPPVKQEQRRTNRPNEMP-----RKQLANKTKGKPNSRRQTGVIPCGKRTDFGYDKNFDKRYTIGKLLGHGQFGYTYVATDKANGDRVAVKRIDKNKMILPIAVEDVKREVKILKELAGHENVVQFYNAFEDDSYVFIVMELCEGGELLDRILEKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSKALDSPLKATDFGLSDFIKPGKKFQDIVGSAYYVAPEVLRRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISTSAKDFVKKILVKDPRARLTAAQALSHPWVREGGNASEIPIDISVLNNMRQFVRYSRLKQFALRALASTLNAEELSDLKDQFDAIDVDKNGSISLEEMRQALAKDVPWKLKDSRVLEILEAIDSNTDGLVDFTEFVAATLHVHQLEEHDSEKWQQRSRAAFEKFDIDKDGFITPEELKMHTGLRGSIDPLLEEADIDKDGKISLSEFRRLLRTASISSKTVTSPPGQRNARK 556
| Match Name | Stats | Description |
|---|---|---|
| A0A2Z0DVE0 | E-Value: 0.000e+0, PID: 82.30 | (Calcium-dependent protein kinase 16-like protein ... [more] |
| A0A6P6T6V1 | E-Value: 0.000e+0, PID: 81.63 | (calcium-dependent protein kinase 18-like {ECO:000... [more] |
| A0A6I9UHY3 | E-Value: 0.000e+0, PID: 80.74 | (calcium-dependent protein kinase 18-like {ECO:000... [more] |
| A0A2Z7C1M6 | E-Value: 0.000e+0, PID: 80.14 | (Calcium-dependent protein kinase 16-like {ECO:000... [more] |
| A0A2R6Q252 | E-Value: 0.000e+0, PID: 81.74 | (Calcium-dependent protein kinase {ECO:0000313|EMB... [more] |
| A0A5A7RDZ1 | E-Value: 0.000e+0, PID: 80.57 | (Calcium-dependent protein kinase {ECO:0000313|EMB... [more] |
| A0A2G9GUE5 | E-Value: 0.000e+0, PID: 80.60 | (Ca2+/calmodulin-dependent protein kinase, EF-Hand... [more] |
| A0A2J6MCM3 | E-Value: 0.000e+0, PID: 81.50 | (Uncharacterized protein {ECO:0000313|EMBL:PLY9732... [more] |
| A0A6S7N1B2 | E-Value: 0.000e+0, PID: 81.47 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4094... [more] |
| A0A5E4E3E1 | E-Value: 0.000e+0, PID: 80.04 | (Full=PREDICTED: calcium-dependent {ECO:0000313|EM... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |