Resource Type:
Polypeptide
Name:
XM_017393397.1
Identifier:
XM_017393397.1-protein
Sequence:
MPQVASSKAVQSSSSSVWTRHSSLISLATLTLISLTYLSQKSLRIPSMVQ
AKSEIISIKDEVSDDVYHSPEIFRLNYAEMEKKFKVFIYPDGDPNTFYQT
PRKLTGKYASEGYFFQNIRESGFRTEDPDQAHLFFIPISCHKMRGKGTSY
DNMTIIVQNYVESLIYKYPYWNRTLGADHFFVTCHDVGVRATEGLPLLVK
NSIRAVCSPSYDVGFIPHKDIALPQVLQPFALPAGGNDIENRTRLGFWAG
HRNSKIRVILARVWENDTELDIANNRINRATGHLVYQKKFYRTKFCICPG
GSQVNSARIADSIHYGCIPVILSNYYDLPFNDILDWKKFAVVLRENDVYQ
LKQILKAITNEEFVSLHQNLVKIQKHFQWNTPPIKFDAFHMVMYDLWLRH
RVIKY
Sequence Length:
405
Sequence Checksum:
54820a470f89cefc3d5c62fd609c3049
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017393397.1, derives from mRNA, XM_017393397.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017393397.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017393397.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BAP1 (Exostosin domain-containing protein {ECO:0000259|Pfam:PF03016})
HSP 1 Score: 735.717 bits (1898), Expect = 0.000e+0
Identity = 355/409 (86.80%), Postives = 378/409 (92.42%), Query Frame = 0
Match: A0A6L5BAP1 (Exostosin domain-containing protein {ECO:0000259|Pfam:PF03016})
HSP 1 Score: 735.717 bits (1898), Expect = 0.000e+0
Identity = 355/409 (86.80%), Postives = 378/409 (92.42%), Query Frame = 0
Query: 1 MPQVASSKAVQSSSSSVWTRHSSLISLATLTLISLTYLSQKSLRIP----SMVQAKSEIISIKDEVSDDVYHSPEIFRLNYAEMEKKFKVFIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESGFRTEDPDQAHLFFIPISCHKMRGKGTSYDNMTIIVQNYVESLIYKYPYWNRTLGADHFFVTCHDVGVRATEGLPLLVKNSIRAVCSPSYDVGFIPHKDIALPQVLQPFALPAGGNDIENRTRLGFWAGHRNSKIRVILARVWENDTELDIANNRINRATGHLVYQKKFYRTKFCICPGGSQVNSARIADSIHYGCIPVILSNYYDLPFNDILDWKKFAVVLRENDVYQLKQILKAITNEEFVSLHQNLVKIQKHFQWNTPPIKFDAFHMVMYDLWLRHRVIKY 405
MP + S K +QS ++ + TRHS+ ++LA LTLIS+TYLS KSLR P S + + I DE+SD VYHSPE+FRLNYAEME+KFKVFIY DGDP TFYQTPRKLTGKYASEGYFFQNIRES FRTE PD+A LFFIPISCHKMRGKGTSYDNMTIIVQNYVESLIYKYPYWNRTLGADHFFVTCHDVGVRATEGLPLLVKNSIRAVCSPSYDVGFIPHKDIALPQVLQPFALPAGGNDIENRTRLGFWAGHRNSKIRVILARVWENDTELDIANNRI+R+TG+LVYQKKFYRTKFCICPGGSQVNSARIADSIHYGCIPVILSNYYDLPFNDILDWKKFAVVL+ENDVY+LKQILKAI NEEF+SLHQNLVKIQKHFQWN+PP+KFDAFHMVMYDLWLRHRVIKY
Sbjct: 1 MPPLPS-KPLQSPTA-ICTRHSTFLTLAALTLISITYLSLKSLRSPLQSTSSYAVSPQHLIINDELSD-VYHSPEVFRLNYAEMERKFKVFIYTDGDPKTFYQTPRKLTGKYASEGYFFQNIRESRFRTEVPDEADLFFIPISCHKMRGKGTSYDNMTIIVQNYVESLIYKYPYWNRTLGADHFFVTCHDVGVRATEGLPLLVKNSIRAVCSPSYDVGFIPHKDIALPQVLQPFALPAGGNDIENRTRLGFWAGHRNSKIRVILARVWENDTELDIANNRIDRSTGNLVYQKKFYRTKFCICPGGSQVNSARIADSIHYGCIPVILSNYYDLPFNDILDWKKFAVVLKENDVYRLKQILKAIKNEEFISLHQNLVKIQKHFQWNSPPVKFDAFHMVMYDLWLRHRVIKY 406
BLAST of XM_017393397.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7I607 (Exostosin domain-containing protein {ECO:0000259|Pfam:PF03016})
HSP 1 Score: 701.819 bits (1810), Expect = 0.000e+0
Identity = 332/400 (83.00%), Postives = 363/400 (90.75%), Query Frame = 0
Match: A0A7J7I607 (Exostosin domain-containing protein {ECO:0000259|Pfam:PF03016})
HSP 1 Score: 701.819 bits (1810), Expect = 0.000e+0
Identity = 332/400 (83.00%), Postives = 363/400 (90.75%), Query Frame = 0
Query: 17 VWTRHSSLISLATLTLISLTYLSQKSLRIPS----------MVQAKSEIISIKD-EVSDDVYHSPEIFRLNYAEMEKKFKVFIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESGFRTEDPDQAHLFFIPISCHKMRGKGTSYDNMTIIVQNYVESLIYKYPYWNRTLGADHFFVTCHDVGVRATEGLPLLVKNSIRAVCSPSYDVGFIPHKDIALPQVLQPFALPAGGNDIENRTRLGFWAGHRNSKIRVILARVWENDTELDIANNRINRATGHLVYQKKFYRTKFCICPGGSQVNSARIADSIHYGCIPVILSNYYDLPFNDILDWKKFAVVLRENDVYQLKQILKAITNEEFVSLHQNLVKIQKHFQWNTPPIKFDAFHMVMYDLWLRHRVIKY 405
V++ SL++LA LTLIS TYLS KS+ P ++ + S++++ D E DVYHSP+IFRLNYAEME KFKVFIYPDGDPNTFYQTPRKLTGKYASEGYFFQN+R+S FRT+DPDQAHLFFIPISCHKMRGKGTSY+NMTIIVQNYVESLI KYPYWNRTLGADHFFVTCHDVGVRATEGLPLLVKNSIR VCSPSYDVGFIPHKDIALPQVLQPFALPAGGND+ENRT LGFWAGHRNSKIRVILARVWENDTELDI+NNRINRATGHL+YQKKFYRTKFCICPGGSQVNSARI DSIHYGCIPVILSNYYDLPFNDILDW+KF+VVL+E DVY+LKQILK I++ EFV+LH+NLVK+QKHFQWN+PPIK+DAFHMVMYDLWLRH VIKY
Sbjct: 15 VFSIRGSLVTLAILTLISFTYLSLKSIHFPPQPNSSTPPNPILASPSKVLADHDFEDYSDVYHSPQIFRLNYAEMENKFKVFIYPDGDPNTFYQTPRKLTGKYASEGYFFQNVRDSPFRTDDPDQAHLFFIPISCHKMRGKGTSYENMTIIVQNYVESLISKYPYWNRTLGADHFFVTCHDVGVRATEGLPLLVKNSIRVVCSPSYDVGFIPHKDIALPQVLQPFALPAGGNDVENRTTLGFWAGHRNSKIRVILARVWENDTELDISNNRINRATGHLLYQKKFYRTKFCICPGGSQVNSARITDSIHYGCIPVILSNYYDLPFNDILDWRKFSVVLKEIDVYRLKQILKDISDAEFVALHKNLVKVQKHFQWNSPPIKYDAFHMVMYDLWLRHHVIKY 414
BLAST of XM_017393397.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AI74 (Exostosin domain-containing protein {ECO:0000259|Pfam:PF03016})
HSP 1 Score: 699.123 bits (1803), Expect = 0.000e+0
Identity = 328/405 (80.99%), Postives = 361/405 (89.14%), Query Frame = 0
Match: A0A5J5AI74 (Exostosin domain-containing protein {ECO:0000259|Pfam:PF03016})
HSP 1 Score: 699.123 bits (1803), Expect = 0.000e+0
Identity = 328/405 (80.99%), Postives = 361/405 (89.14%), Query Frame = 0
Query: 12 SSSSSVWTRHSSLISLATLTLISLTYLSQKSLRIP----------SMVQAKSEIISIKDEVS-DDVYHSPEIFRLNYAEMEKKFKVFIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESGFRTEDPDQAHLFFIPISCHKMRGKGTSYDNMTIIVQNYVESLIYKYPYWNRTLGADHFFVTCHDVGVRATEGLPLLVKNSIRAVCSPSYDVGFIPHKDIALPQVLQPFALPAGGNDIENRTRLGFWAGHRNSKIRVILARVWENDTELDIANNRINRATGHLVYQKKFYRTKFCICPGGSQVNSARIADSIHYGCIPVILSNYYDLPFNDILDWKKFAVVLRENDVYQLKQILKAITNEEFVSLHQNLVKIQKHFQWNTPPIKFDAFHMVMYDLWLRHRVIKY 405
SS++++ + SL++LA LTL+S TYLS KSL P ++ + S+++S D + D+YHSPE FR+ YAEMEK FKV+IYPDGDPNT+YQTPRKLTGKYASEGYFFQNIRES FRTEDPDQAHLFFIPISCHKMRGKGTSY+NMTIIVQNYVESLI KYPYWNRTLGADHFFVTCHDVGVRATEG+PLLVKNSIR VCSPSYDVGFIPHKD+ALPQVLQPFALPAGGND+ENRT LGFWAGHRNSKIRVILARVWENDTELDI+NNRINRATG L+YQKKFYRTKFCICPGGSQVNSARI DSIHYGC PVILSNYYDLPFNDIL+W+KF+V+L+ENDVYQLKQILK I N EFV LH NLVK+QKHFQWN+PPIK+DAFHMVMYDLWLRH VIKY
Sbjct: 11 SSTAAICSLQGSLLTLAILTLVSFTYLSLKSLHFPLQYTPYTTPHTLSASVSQVVSAHDLGNFSDIYHSPETFRIIYAEMEKNFKVYIYPDGDPNTYYQTPRKLTGKYASEGYFFQNIRESRFRTEDPDQAHLFFIPISCHKMRGKGTSYENMTIIVQNYVESLITKYPYWNRTLGADHFFVTCHDVGVRATEGVPLLVKNSIRVVCSPSYDVGFIPHKDVALPQVLQPFALPAGGNDVENRTTLGFWAGHRNSKIRVILARVWENDTELDISNNRINRATGPLLYQKKFYRTKFCICPGGSQVNSARITDSIHYGCTPVILSNYYDLPFNDILNWRKFSVILKENDVYQLKQILKDIPNAEFVGLHNNLVKVQKHFQWNSPPIKYDAFHMVMYDLWLRHHVIKY 415
BLAST of XM_017393397.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200PUE7 ((Exostosin-like {ECO:0000313|EMBL:OVA01831.1}))
HSP 1 Score: 695.271 bits (1793), Expect = 0.000e+0
Identity = 326/395 (82.53%), Postives = 357/395 (90.38%), Query Frame = 0
Match: A0A200PUE7 ((Exostosin-like {ECO:0000313|EMBL:OVA01831.1}))
HSP 1 Score: 695.271 bits (1793), Expect = 0.000e+0
Identity = 326/395 (82.53%), Postives = 357/395 (90.38%), Query Frame = 0
Query: 19 TRHSSLISLATLTLISLTYLSQKSLRIPSMVQAKSEIISIKDEVS--------DDVYHSPEIFRLNYAEMEKKFKVFIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESGFRTEDPDQAHLFFIPISCHKMRGKGTSYDNMTIIVQNYVESLIYKYPYWNRTLGADHFFVTCHDVGVRATEGLPLLVKNSIRAVCSPSYDVGFIPHKDIALPQVLQPFALPAGGNDIENRTRLGFWAGHRNSKIRVILARVWENDTELDIANNRINRATGHLVYQKKFYRTKFCICPGGSQVNSARIADSIHYGCIPVILSNYYDLPFNDILDWKKFAVVLRENDVYQLKQILKAITNEEFVSLHQNLVKIQKHFQWNTPPIKFDAFHMVMYDLWLRHRVIKY 405
T H S ++L+ LTLI+ T+LS KSLR P +Q S +S+ +VS DVYHSPE+FRLNYAEMEK FKV+IYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRES FRT+DPD AHLFFIPISCHKMRGKGTSY+NMTIIV++YV+SLI KYPYWNRTLGADHFFVTCHDVGVRATEG+PLLVKNSIR VCSPSYDVGFIPHKD+ALPQVLQPFALPAGGND+ENRT LGFWAGHRNSKIRVILARVWENDTEL+IANNRINRATGHLVYQKKFYR KFCICPGGSQVNSARI DSIHYGC+PVILSNYYDLPFNDILDW+KF+V+L+E+DVY+LK ILK I +EEFV LH NLVK+QKHFQWNTPP+K+DAFHMVMYDLWLRH VIKY
Sbjct: 17 TLHRSFLTLSALTLITFTFLSLKSLRFP--LQYSSSDLSLTRQVSGDGDLEELSDVYHSPEVFRLNYAEMEKNFKVYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESKFRTDDPDLAHLFFIPISCHKMRGKGTSYENMTIIVESYVQSLIMKYPYWNRTLGADHFFVTCHDVGVRATEGVPLLVKNSIRVVCSPSYDVGFIPHKDVALPQVLQPFALPAGGNDLENRTTLGFWAGHRNSKIRVILARVWENDTELEIANNRINRATGHLVYQKKFYRMKFCICPGGSQVNSARITDSIHYGCVPVILSNYYDLPFNDILDWQKFSVILKESDVYRLKYILKDIPDEEFVLLHNNLVKVQKHFQWNTPPLKYDAFHMVMYDLWLRHHVIKY 409
BLAST of XM_017393397.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8B6R3 ((probable glycosyltransferase At5g03795 {ECO:0000313|RefSeq:XP_010276665.1}))
HSP 1 Score: 694.886 bits (1792), Expect = 0.000e+0
Identity = 331/407 (81.33%), Postives = 357/407 (87.71%), Query Frame = 0
Match: A0A1U8B6R3 ((probable glycosyltransferase At5g03795 {ECO:0000313|RefSeq:XP_010276665.1}))
HSP 1 Score: 694.886 bits (1792), Expect = 0.000e+0
Identity = 331/407 (81.33%), Postives = 357/407 (87.71%), Query Frame = 0
Query: 7 SKAVQSSSSSVWTRHSSLISLATLTLISLTYLSQKSLRIP-------SMVQAKSEIISIKDEVS-DDVYHSPEIFRLNYAEMEKKFKVFIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESGFRTEDPDQAHLFFIPISCHKMRGKGTSYDNMTIIVQNYVESLIYKYPYWNRTLGADHFFVTCHDVGVRATEGLPLLVKNSIRAVCSPSYDVGFIPHKDIALPQVLQPFALPAGGNDIENRTRLGFWAGHRNSKIRVILARVWENDTELDIANNRINRATGHLVYQKKFYRTKFCICPGGSQVNSARIADSIHYGCIPVILSNYYDLPFNDILDWKKFAVVLRENDVYQLKQILKAITNEEFVSLHQNLVKIQKHFQWNTPPIKFDAFHMVMYDLWLRHRVIKY 405
K V SS V T SL++ A LTLIS TY+S KSLR P S K ++++ D V D+YHSP++F LNYAEMEK FKV+IYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRES FRT+DPDQA LFFIPISCHKMRGKGTSY+NMTIIVQNY+ESLI KYPYWNRTLGADHFFVTCHDVGVRATEG+PLLVKNSIR VCSPSYDVGFIPHKD+ALPQVLQPFALPAGGNDIENRT LGFWAGHRNSKIRVILA VWENDTELDI NNRINRATGHLVYQK+FY+TK+CICPGGSQVNSARIADSIHYGCIPVILSNYYDLPFNDILDW KF+V+L E DVYQLK ILK I + EFV+LH NLVK+QKHFQWNTPP++FDAFHMVMYDLWLRHRVIKY
Sbjct: 3 GKPVPYPSSPVCTLQRSLLTFAALTLISFTYVSFKSLRFPLQYGSDLSENPPKVKVVAEGDFVELSDIYHSPKVFLLNYAEMEKNFKVYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESRFRTDDPDQADLFFIPISCHKMRGKGTSYENMTIIVQNYIESLISKYPYWNRTLGADHFFVTCHDVGVRATEGVPLLVKNSIRVVCSPSYDVGFIPHKDVALPQVLQPFALPAGGNDIENRTTLGFWAGHRNSKIRVILAHVWENDTELDIMNNRINRATGHLVYQKRFYKTKYCICPGGSQVNSARIADSIHYGCIPVILSNYYDLPFNDILDWHKFSVILNEQDVYQLKDILKGIPDTEFVTLHNNLVKVQKHFQWNTPPVRFDAFHMVMYDLWLRHRVIKY 409
BLAST of XM_017393397.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1ESD6 ((probable glycosyltransferase At5g03795 isoform X2 {ECO:0000313|RefSeq:XP_022929528.1}))
HSP 1 Score: 690.649 bits (1781), Expect = 0.000e+0
Identity = 322/387 (83.20%), Postives = 356/387 (91.99%), Query Frame = 0
Match: A0A6J1ESD6 ((probable glycosyltransferase At5g03795 isoform X2 {ECO:0000313|RefSeq:XP_022929528.1}))
HSP 1 Score: 690.649 bits (1781), Expect = 0.000e+0
Identity = 322/387 (83.20%), Postives = 356/387 (91.99%), Query Frame = 0
Query: 22 SSLISLATLTLISLTYLSQKSLRIPSMVQAKSEIISIKDEVSD---DVYHSPEIFRLNYAEMEKKFKVFIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESGFRTEDPDQAHLFFIPISCHKMRGKGTSYDNMTIIVQNYVESLIYKYPYWNRTLGADHFFVTCHDVGVRATEGLPLLVKNSIRAVCSPSYDVGFIPHKDIALPQVLQPFALPAGGNDIENRTRLGFWAGHRNSKIRVILARVWENDTELDIANNRINRATGHLVYQKKFYRTKFCICPGGSQVNSARIADSIHYGCIPVILSNYYDLPFNDILDWKKFAVVLRENDVYQLKQILKAITNEEFVSLHQNLVKIQKHFQWNTPPIKFDAFHMVMYDLWLRHRVIKY 405
+SL++LA LT +SLTYLS + S + S++ I+D D DVYHSPE+FRLNYAEME+KFKV+IYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRES FRTEDPDQAHLFFIPISCHKMRGKGTSY+NMTIIVQNYVESLI KYPYWNRTLGADHFFVTCHDVGVRA+EGLP L+KN+IR VCSPSYDVGFIPHKD+ALPQVLQPFALPAGGND ENRT LGFWAGHRNSKIRVILARVWENDTELDI+NNRINRATGHLVYQK+FYRTKFCICPGGSQVNSARIADSIHYGC+PVILS+YYDLPFNDI+DWKKF+V+++E DVYQLKQILK I++ EF+ LH+NLV++QKHFQWN+PPIK+DAFHMVMYDLWLRH VIKY
Sbjct: 90 ASLLTLAVLTFLSLTYLS-FTSLHSSASSSPSQLGGIEDAADDEISDVYHSPEVFRLNYAEMERKFKVYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESRFRTEDPDQAHLFFIPISCHKMRGKGTSYENMTIIVQNYVESLISKYPYWNRTLGADHFFVTCHDVGVRASEGLPFLIKNAIRVVCSPSYDVGFIPHKDVALPQVLQPFALPAGGNDTENRTTLGFWAGHRNSKIRVILARVWENDTELDISNNRINRATGHLVYQKRFYRTKFCICPGGSQVNSARIADSIHYGCVPVILSDYYDLPFNDIIDWKKFSVIVKERDVYQLKQILKDISDIEFIKLHKNLVQVQKHFQWNSPPIKYDAFHMVMYDLWLRHHVIKY 475
BLAST of XM_017393397.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1EN04 ((probable glycosyltransferase At5g03795 isoform X1 {ECO:0000313|RefSeq:XP_022929527.1}))
HSP 1 Score: 690.649 bits (1781), Expect = 0.000e+0
Identity = 323/390 (82.82%), Postives = 355/390 (91.03%), Query Frame = 0
Match: A0A6J1EN04 ((probable glycosyltransferase At5g03795 isoform X1 {ECO:0000313|RefSeq:XP_022929527.1}))
HSP 1 Score: 690.649 bits (1781), Expect = 0.000e+0
Identity = 323/390 (82.82%), Postives = 355/390 (91.03%), Query Frame = 0
Query: 22 SSLISLATLTLISLTYLS---QKSLRIPSMVQAKSEIISIKDEVSD---DVYHSPEIFRLNYAEMEKKFKVFIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESGFRTEDPDQAHLFFIPISCHKMRGKGTSYDNMTIIVQNYVESLIYKYPYWNRTLGADHFFVTCHDVGVRATEGLPLLVKNSIRAVCSPSYDVGFIPHKDIALPQVLQPFALPAGGNDIENRTRLGFWAGHRNSKIRVILARVWENDTELDIANNRINRATGHLVYQKKFYRTKFCICPGGSQVNSARIADSIHYGCIPVILSNYYDLPFNDILDWKKFAVVLRENDVYQLKQILKAITNEEFVSLHQNLVKIQKHFQWNTPPIKFDAFHMVMYDLWLRHRVIKY 405
+SL++LA LT +SLTYLS S S Q ++ I+D D DVYHSPE+FRLNYAEME+KFKV+IYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRES FRTEDPDQAHLFFIPISCHKMRGKGTSY+NMTIIVQNYVESLI KYPYWNRTLGADHFFVTCHDVGVRA+EGLP L+KN+IR VCSPSYDVGFIPHKD+ALPQVLQPFALPAGGND ENRT LGFWAGHRNSKIRVILARVWENDTELDI+NNRINRATGHLVYQK+FYRTKFCICPGGSQVNSARIADSIHYGC+PVILS+YYDLPFNDI+DWKKF+V+++E DVYQLKQILK I++ EF+ LH+NLV++QKHFQWN+PPIK+DAFHMVMYDLWLRH VIKY
Sbjct: 90 ASLLTLAVLTFLSLTYLSFTSLHSSASSSPSQLPVKLGGIEDAADDEISDVYHSPEVFRLNYAEMERKFKVYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESRFRTEDPDQAHLFFIPISCHKMRGKGTSYENMTIIVQNYVESLISKYPYWNRTLGADHFFVTCHDVGVRASEGLPFLIKNAIRVVCSPSYDVGFIPHKDVALPQVLQPFALPAGGNDTENRTTLGFWAGHRNSKIRVILARVWENDTELDISNNRINRATGHLVYQKRFYRTKFCICPGGSQVNSARIADSIHYGCVPVILSDYYDLPFNDIIDWKKFSVIVKERDVYQLKQILKDISDIEFIKLHKNLVQVQKHFQWNSPPIKYDAFHMVMYDLWLRHHVIKY 479
BLAST of XM_017393397.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7C9AM31 ((Xylogalacturonan beta-1,3-xylosyltransferase {ECO:0000313|EMBL:MBA4670257.1}) (2.4.2.41 {ECO:0000313|EMBL:MBA4670257.1}))
HSP 1 Score: 687.182 bits (1772), Expect = 0.000e+0
Identity = 326/400 (81.50%), Postives = 356/400 (89.00%), Query Frame = 0
Match: A0A7C9AM31 ((Xylogalacturonan beta-1,3-xylosyltransferase {ECO:0000313|EMBL:MBA4670257.1}) (2.4.2.41 {ECO:0000313|EMBL:MBA4670257.1}))
HSP 1 Score: 687.182 bits (1772), Expect = 0.000e+0
Identity = 326/400 (81.50%), Postives = 356/400 (89.00%), Query Frame = 0
Query: 13 SSSSVWTRHSSLISLATLTLISLTYLSQKSLRIPSMVQAKSEIISIKDEVSDD-------VYHSPEIFRLNYAEMEKKFKVFIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESGFRTEDPDQAHLFFIPISCHKMRGKGTSYDNMTIIVQNYVESLIYKYPYWNRTLGADHFFVTCHDVGVRATEGLPLLVKNSIRAVCSPSYDVGFIPHKDIALPQVLQPFALPAGGNDIENRTRLGFWAGHRNSKIRVILARVWENDTELDIANNRINRATGHLVYQKKFYRTKFCICPGGSQVNSARIADSIHYGCIPVILSNYYDLPFNDILDWKKFAVVLRENDVYQLKQILKAITNEEFVSLHQNLVKIQKHFQWNTPPIKFDAFHMVMYDLWLRHRVIKY 405
SSSS++T SL++LA LTL+S T+LS KSLR S Q S +I SDD VYHSPEIFRLNY EMEK+FKV+IYPDGDPNTFYQTPRKLTGKY+SEGYFFQNIRES FRT+DPDQA LFFIPISCHKMRGKGTSY+NMTIIV++YVESL+ KYPYWNRTLGADHFFVTCHDVGVRATEGLP LVKNSIRAVCSPSYDVGFIPHKD+ALPQVLQPFALPAGGND+ENRT LGFWAGHRNSKIRVILARVWENDTELD++NNRI+RA G LVYQK+FYR K+CICPGGSQVNSARI DSIHYGCIPVILS+YYDLPFNDILDW+KFAV+LRE DVY+LKQ LK I EFV LH NLVK+QKHFQWNTPPIK+DAFHMVMY+LWLRHRVI+Y
Sbjct: 11 SSSSMFTLRGSLLTLAILTLVSFTFLSLKSLR-SSPTQPSSNLIVNTVGKSDDEKEELSEVYHSPEIFRLNYEEMEKRFKVYIYPDGDPNTFYQTPRKLTGKYSSEGYFFQNIRESRFRTDDPDQADLFFIPISCHKMRGKGTSYENMTIIVKDYVESLMVKYPYWNRTLGADHFFVTCHDVGVRATEGLPFLVKNSIRAVCSPSYDVGFIPHKDVALPQVLQPFALPAGGNDLENRTNLGFWAGHRNSKIRVILARVWENDTELDVSNNRISRAIGPLVYQKRFYRNKYCICPGGSQVNSARITDSIHYGCIPVILSDYYDLPFNDILDWRKFAVILRERDVYELKQKLKDIPYSEFVRLHMNLVKVQKHFQWNTPPIKYDAFHMVMYELWLRHRVIRY 409
BLAST of XM_017393397.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A484MJ79 (Exostosin domain-containing protein {ECO:0000259|Pfam:PF03016})
HSP 1 Score: 686.797 bits (1771), Expect = 0.000e+0
Identity = 322/429 (75.06%), Postives = 363/429 (84.62%), Query Frame = 0
Match: A0A484MJ79 (Exostosin domain-containing protein {ECO:0000259|Pfam:PF03016})
HSP 1 Score: 686.797 bits (1771), Expect = 0.000e+0
Identity = 322/429 (75.06%), Postives = 363/429 (84.62%), Query Frame = 0
Query: 4 VASSKAVQSSSSSVWTRHSSLISLATLTLISLTYLSQKSLRIP---------------------------SMVQAKSEIISIKDEVSDDVYHSPEIFRLNYAEMEKKFKVFIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESGFRTEDPDQAHLFFIPISCHKMRGKGTSYDNMTIIVQNYVESLIYKYPYWNRTLGADHFFVTCHDVGVRATEGLPLLVKNSIRAVCSPSYDVGFIPHKDIALPQVLQPFALPAGGNDIENRTRLGFWAGHRNSKIRVILARVWENDTELDIANNRINRATGHLVYQKKFYRTKFCICPGGSQVNSARIADSIHYGCIPVILSNYYDLPFNDILDWKKFAVVLRENDVYQLKQILKAITNEEFVSLHQNLVKIQKHFQWNTPPIKFDAFHMVMYDLWLRHRVIKY 405
A + +S ++V T S+++LA LTL+S + +S KSL P + ++ + +S +++ DVYHSP++FRLNYAEMEKKFKV+IYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRES F T+DPDQAHLFFIPISCHKMRGKGTSY+NMTIIVQNYVESLI KYPYWNRTLGADHFFVTCHDVGVRATEG P L+KNSIR VCSPSYDVG+IPHKD+ALPQVLQPFALPAGGND+ENRT LGFWAGHRNSKIRVILARVWENDTELDI+NNRINRA+GHL+YQK+FYRTKFCICPGGSQVNSARIADSIHY CIPVILSNYYDLPFNDI++W KFAVVLRE DVY+LKQILK IT EEFV+LH NL+KIQKHFQWN+PP+K+DAFHMVMY+LWLRHRV+KY
Sbjct: 3 AARPSQLPTSLATVCTLKCSILTLAVLTLLSFSCISLKSLHSPFIESSSNPSHFQRTLVINSATNATGSSASIEVPVDSLSPEEDDLSDVYHSPDVFRLNYAEMEKKFKVYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESNFVTDDPDQAHLFFIPISCHKMRGKGTSYENMTIIVQNYVESLIVKYPYWNRTLGADHFFVTCHDVGVRATEGHPFLIKNSIRVVCSPSYDVGYIPHKDVALPQVLQPFALPAGGNDVENRTSLGFWAGHRNSKIRVILARVWENDTELDISNNRINRASGHLLYQKRFYRTKFCICPGGSQVNSARIADSIHYACIPVILSNYYDLPFNDIINWHKFAVVLREKDVYELKQILKNITQEEFVTLHYNLLKIQKHFQWNSPPVKYDAFHMVMYELWLRHRVVKY 431
BLAST of XM_017393397.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A484NE32 (Exostosin domain-containing protein {ECO:0000259|Pfam:PF03016})
HSP 1 Score: 686.797 bits (1771), Expect = 0.000e+0
Identity = 325/429 (75.76%), Postives = 361/429 (84.15%), Query Frame = 0
Match: A0A484NE32 (Exostosin domain-containing protein {ECO:0000259|Pfam:PF03016})
HSP 1 Score: 686.797 bits (1771), Expect = 0.000e+0
Identity = 325/429 (75.76%), Postives = 361/429 (84.15%), Query Frame = 0
Query: 4 VASSKAVQSSSSSVWTRHSSLISLATLTLISLTYLSQKSLRIP------------------SMVQAKSEIISIKDEVSD---------DVYHSPEIFRLNYAEMEKKFKVFIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESGFRTEDPDQAHLFFIPISCHKMRGKGTSYDNMTIIVQNYVESLIYKYPYWNRTLGADHFFVTCHDVGVRATEGLPLLVKNSIRAVCSPSYDVGFIPHKDIALPQVLQPFALPAGGNDIENRTRLGFWAGHRNSKIRVILARVWENDTELDIANNRINRATGHLVYQKKFYRTKFCICPGGSQVNSARIADSIHYGCIPVILSNYYDLPFNDILDWKKFAVVLRENDVYQLKQILKAITNEEFVSLHQNLVKIQKHFQWNTPPIKFDAFHMVMYDLWLRHRVIKY 405
A + +S +++ T S+++LA LTL+S + +S KSL P S A SI++ V DVYHSP++FRLNYAEMEKKFKV+IYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRES F T+DPDQAHLFFIPISCHKMRGKGTSY+NMTIIVQNYVESLI KYPYWNRTLGADHFFVTCHDVGVRATEG P L+KNSIR VCSPSYDVG+IPHKD+ALPQVLQPFALPAGGND+ENRT LGFWAGHRNSKIRVILARVWENDTELDI+NNRINRA+GHL+YQK+FYRTKFCICPGGSQVNSARIADSIHY CIPVILSNYYDLPFNDI++W KFAVVLRE DVY+LKQILK IT EEFV+LH NL+KIQKHFQWN+PP+K+DAFHMVMY+LWLRHRV+KY
Sbjct: 3 AARPSQLPTSLATICTLKCSILTLAVLTLLSFSCISLKSLHSPFIESSSNPSPFQRTLVINSASNATGSSASIEEPVDSLSPEEDELSDVYHSPDVFRLNYAEMEKKFKVYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESNFVTDDPDQAHLFFIPISCHKMRGKGTSYENMTIIVQNYVESLIVKYPYWNRTLGADHFFVTCHDVGVRATEGHPFLIKNSIRVVCSPSYDVGYIPHKDVALPQVLQPFALPAGGNDVENRTSLGFWAGHRNSKIRVILARVWENDTELDISNNRINRASGHLLYQKRFYRTKFCICPGGSQVNSARIADSIHYACIPVILSNYYDLPFNDIINWHKFAVVLREKDVYELKQILKNITQEEFVTLHYNLLKIQKHFQWNSPPVKYDAFHMVMYELWLRHRVVKY 431
| Match Name | Stats | Description |
|---|---|---|
| A0A6L5BAP1 | E-Value: 0.000e+0, PID: 86.80 | Exostosin domain-containing protein {ECO:0000259|P... [more] |
| A0A7J7I607 | E-Value: 0.000e+0, PID: 83.00 | Exostosin domain-containing protein {ECO:0000259|P... [more] |
| A0A5J5AI74 | E-Value: 0.000e+0, PID: 80.99 | Exostosin domain-containing protein {ECO:0000259|P... [more] |
| A0A200PUE7 | E-Value: 0.000e+0, PID: 82.53 | (Exostosin-like {ECO:0000313|EMBL:OVA01831.1})[more] |
| A0A1U8B6R3 | E-Value: 0.000e+0, PID: 81.33 | (probable glycosyltransferase At5g03795 {ECO:00003... [more] |
| A0A6J1ESD6 | E-Value: 0.000e+0, PID: 83.20 | (probable glycosyltransferase At5g03795 isoform X2... [more] |
| A0A6J1EN04 | E-Value: 0.000e+0, PID: 82.82 | (probable glycosyltransferase At5g03795 isoform X1... [more] |
| A0A7C9AM31 | E-Value: 0.000e+0, PID: 81.50 | (Xylogalacturonan beta-1,3-xylosyltransferase {ECO... [more] |
| A0A484MJ79 | E-Value: 0.000e+0, PID: 75.06 | Exostosin domain-containing protein {ECO:0000259|P... [more] |
| A0A484NE32 | E-Value: 0.000e+0, PID: 75.76 | Exostosin domain-containing protein {ECO:0000259|P... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |