Resource Type:
Polypeptide
Name:
XM_017396761.1
Identifier:
XM_017396761.1-protein
Sequence:
MLSKQHLNSWTWFKHHHLSNWFSFIISPLPPFITYKKNLFFLFFIPSIHI
FLSIYITSGFYITDKPYNPASTMASTSNSTLSSKFLGTQLVLLSPPTPKT
SSSLPSLSRKKMILTQTALNNKIKKPNSALQDLSTNATLATLLLSSISPQ
ALALNDTVSPPSPAPSTTVLEAENPVKSSPFSQTLSLNAPVTKGASSDLP
EGTQWRYSEFLNAVKKGKVERVRFNKEGGVLQLTAVDGRRASVVVPNDPD
LVDILAMNGVDISVSEGESSNGLVGFIGNLLFPVIAFAGLFFLFRRGQGG
PGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFL
KNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEF
VELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQRGAGMGGGNDER
EQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDR
PDVAGRVKILQVHSRGKSLAKDVDFDKIARRTPGFTGADLQNLMNEAAIL
AARRDLKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALV
GALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAV
ALGGRVAEEVIFGKENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAV
GGAGGNPFLGQQMSSQKDYSMATADIVDSEVRELVEKAYARATEIVNTHI
DILHKLAQLLIEKESVDGEEFMSLFIDGKAELYVA
Sequence Length:
785
Sequence Checksum:
62d3ea7c88dc7e14cdcd476eb5d5d19d
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017396761.1, derives from mRNA, XM_017396761.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017396761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017396761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BE70 (AAA domain-containing protein {ECO:0000259|SMART:SM00382})
HSP 1 Score: 1227.62 bits (3175), Expect = 0.000e+0
Identity = 634/713 (88.92%), Postives = 669/713 (93.83%), Query Frame = 0
Match: A0A6L5BE70 (AAA domain-containing protein {ECO:0000259|SMART:SM00382})
HSP 1 Score: 1227.62 bits (3175), Expect = 0.000e+0
Identity = 634/713 (88.92%), Postives = 669/713 (93.83%), Query Frame = 0
Query: 82 SSKFLGTQLVLLSPPTPKTSSS-----LPSLSRKKMILTQTALNNKIKKPNSAL---QDLSTNATLATLLLSSISPQALALNDTVSPPSPAPSTTVLEAENP-VKSSPFSQTLSLNAPVTKGASSDLPEGTQWRYSEFLNAVKKGKVERVRFNKEGGVLQLTAVDGRRASVVVPNDPDLVDILAMNGVDISVSEGESSNGLVGFIGNLLFPVIAFAGLFFLFRRGQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKSLAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGKENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVGGAGGNPFLGQQMSSQKDYSMATADIVDSEVRELVEKAYARATEIVNTHIDILHKLAQLLIEKESVDGEEFMSLFIDGKAELYVA 785
S +F G+QLVLLSPPTPKTS S LP L +++ ++ + LN+K K L QDL++NA LA LL SS+SP+A AL++ VSPPSP V++AE VKSSPFSQTLSL+AP T+ A S+LPEG QWRYSEFLNAVKKGKVERVRFNK+GGVLQLTA+DGRRASVVVPNDPDL+DILAMNGVDISVSEGESSNGL+GFIGNLLFP +AFAGLFFLF+R QGG GGPGG+GGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAK+KAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK+LAKDVDFDK+ARRTPGFTGADLQNLMNEAAILAARR+LKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGKENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVGG+GG+PFLGQQMSSQKDYSMATAD+VDSEVRELVEKAYARATEI+NTHIDILHKLA LLIEKESVDGEEFMSLFIDGKAELYVA
Sbjct: 3 SKQFFGSQLVLLSPPTPKTSRSSSSSSLPLLFKRRFLIAHSLLNHKNNKKPKNLRLVQDLTSNAALAALLFSSVSPKAFALDEIVSPPSP---PEVIQAEAAAVKSSPFSQTLSLDAPKTQ-AVSELPEGAQWRYSEFLNAVKKGKVERVRFNKDGGVLQLTAIDGRRASVVVPNDPDLIDILAMNGVDISVSEGESSNGLLGFIGNLLFPFLAFAGLFFLFQRAQGGSGGPGGMGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKVARRTPGFTGADLQNLMNEAAILAARRELKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGKENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVGGSGGDPFLGQQMSSQKDYSMATADVVDSEVRELVEKAYARATEIINTHIDILHKLALLLIEKESVDGEEFMSLFIDGKAELYVA 711
BLAST of XM_017396761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RME1 ((ATP-dependent zinc metalloprotease {ECO:0000313|EMBL:PSS31204.1}))
HSP 1 Score: 1197.96 bits (3098), Expect = 0.000e+0
Identity = 615/716 (85.89%), Postives = 661/716 (92.32%), Query Frame = 0
Match: A0A2R6RME1 ((ATP-dependent zinc metalloprotease {ECO:0000313|EMBL:PSS31204.1}))
HSP 1 Score: 1197.96 bits (3098), Expect = 0.000e+0
Identity = 615/716 (85.89%), Postives = 661/716 (92.32%), Query Frame = 0
Query: 74 ASTSNSTLSSKFLGTQLVLLSPPTPKTSSSLPSLSRKKMILTQTALNNKIKKPNSALQDLSTNATLATLLLSSISPQALALNDTVSPPSPAPSTTVLEAENPV---KSSPFSQTLSLNAPVTKG-ASSDLPEGTQWRYSEFLNAVKKGKVERVRFNKEGGVLQLTAVDGRRASVVVPNDPDLVDILAMNGVDISVSEGESSNGLVGFIGNLLFPVIAFAGLFFLFRRGQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKSLAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGKENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVGGAGGNPFLGQQMSSQKDYSMATADIVDSEVRELVEKAYARATEIVNTHIDILHKLAQLLIEKESVDGEEFMSLFIDGKAELYVA 785
++T+N SS+FLG Q +LLSPPTP T+ PSLSR+K ++ Q+ LN +KPN L + + ATLA L+ SSI+PQALA+ DT +PP+P P + EA P+ SSPFSQ L L AP + +SDLPEG+QWRYSEFLNAVKKGKVERVRF+K+G LQLTAVDGRRASV+VPNDPDL+DILAMNGVDISVSEG+S NGL FIGNLLFP +AFAGLFFLFRR QGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG PFFSCAASEFVELFVGVGASRVRDLFEKAK+KAPCIVFIDEIDAVGRQRGAG+GGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK+LAKDVDF+KI+RRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI+DALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFG++NVTTGASNDFMQVSRVARQMVERFGFSKKIGQ+A+GG GGNPFLGQQMSSQKDYSMATADIVD+EVRELVEKAY+R+ +I+ THIDILHKLAQLLIEKE+VDGEEFMSLFIDGKAEL+VA
Sbjct: 3 STTTNPLFSSRFLGNQ-ILLSPPTPNTTK-FPSLSRRKFLVPQSILN---RKPNH-LNSIPSQATLAALIFSSITPQALAV-DTANPPNPPPVISA-EAPKPIPSNSSSPFSQNLLLTAPKPQTQTTSDLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRASVIVPNDPDLIDILAMNGVDISVSEGDSGNGLFSFIGNLLFPFLAFAGLFFLFRRSQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEDNVTTGASNDFMQVSRVARQMVERFGFSKKIGQIAIGGPGGNPFLGQQMSSQKDYSMATADIVDAEVRELVEKAYSRSKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELFVA 710
BLAST of XM_017396761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UHD2 ((ATP-dependent zinc metalloprotease FTSH, chloroplastic {ECO:0000313|RefSeq:XP_011101039.1}))
HSP 1 Score: 1197.57 bits (3097), Expect = 0.000e+0
Identity = 613/715 (85.73%), Postives = 656/715 (91.75%), Query Frame = 0
Match: A0A6I9UHD2 ((ATP-dependent zinc metalloprotease FTSH, chloroplastic {ECO:0000313|RefSeq:XP_011101039.1}))
HSP 1 Score: 1197.57 bits (3097), Expect = 0.000e+0
Identity = 613/715 (85.73%), Postives = 656/715 (91.75%), Query Frame = 0
Query: 73 MAST-SNSTLSSKFLGTQLVLLSPPTPKTSSSLPSLSRKKMILTQTALNNKIKKPNSALQDLSTNATLATLLLSSISPQALALNDTVSPPSPAPSTTVLEAENPVKSSPFSQTLSLNAPVTKGAS-SDLPEGTQWRYSEFLNAVKKGKVERVRFNKEGGVLQLTAVDGRRASVVVPNDPDLVDILAMNGVDISVSEGESSNGLVGFIGNLLFPVIAFAGLFFLFRRGQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKSLAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGKENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVGGAGGNPFLGQQMSSQKDYSMATADIVDSEVRELVEKAYARATEIVNTHIDILHKLAQLLIEKESVDGEEFMSLFIDGKAELYVA 785
MAS +N LSS F GTQ V +S PTPKT S +K I+ Q+ LNNK + + S++ LA LL SSI+PQALAL++T PP+PAP +EA+ +SSPF+Q L LNAP + S SDLPEG+QWRYSEFLNAVKKGKVERVRF+KEG LQLTAVDGRRA+V+VPNDPDL+DILAMNGVDISVSEG+S NGL FIGNLLFPV+AFAGLFFLFRR QGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG PFFSCAASEFVELFVGVGASRVRDLF+KAK+KAPCIVFIDEIDAVGRQRGAG+GGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRV+ILQVHSRGK+LAKDVDF+KIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI+DALERIIAGPEKKNAVVS+EKK+LVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFG+ENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVA+GG GGNPFLGQQMSSQKDYSMATAD+VD+EVRELVE+AY RAT+I+ THIDILHKLAQLLIEKE+VDGEEFMSLFIDGKAELY+A
Sbjct: 1 MASALTNPLLSSNFFGTQ-VYISSPTPKTVS-------RKFIVPQSILNNKNSNKSKVV---SSHGALAALLFSSIAPQALALDNT-PPPAPAPQVIEIEAQKTSQSSPFAQNLILNAPKPQAQSTSDLPEGSQWRYSEFLNAVKKGKVERVRFSKEGSALQLTAVDGRRATVIVPNDPDLIDILAMNGVDISVSEGDSGNGLFNFIGNLLFPVLAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFDKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVRILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVERAYTRATQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYIA 703
BLAST of XM_017396761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DCH1 ((FTSH protease 1 {ECO:0000313|EMBL:GFS31921.1}))
HSP 1 Score: 1196.8 bits (3095), Expect = 0.000e+0
Identity = 615/716 (85.89%), Postives = 661/716 (92.32%), Query Frame = 0
Match: A0A7J0DCH1 ((FTSH protease 1 {ECO:0000313|EMBL:GFS31921.1}))
HSP 1 Score: 1196.8 bits (3095), Expect = 0.000e+0
Identity = 615/716 (85.89%), Postives = 661/716 (92.32%), Query Frame = 0
Query: 74 ASTSNSTLSSKFLGTQLVLLSPPTPKTSSSLPSLSRKKMILTQTALNNKIKKPNSALQDLSTNATLATLLLSSISPQALALNDTVSPPSPAPSTTVLEAENPV---KSSPFSQTLSLNAPVTKG-ASSDLPEGTQWRYSEFLNAVKKGKVERVRFNKEGGVLQLTAVDGRRASVVVPNDPDLVDILAMNGVDISVSEGESSNGLVGFIGNLLFPVIAFAGLFFLFRRGQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKSLAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGKENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVGGAGGNPFLGQQMSSQKDYSMATADIVDSEVRELVEKAYARATEIVNTHIDILHKLAQLLIEKESVDGEEFMSLFIDGKAELYVA 785
++T+N SS+FLG Q +LLSPPTP T+ L SLSR+K ++ Q+ LN +KPN L + + ATLA L+ SSI+PQALA+ DT +PP+P P + EA P+ SSPFSQ L L AP + +SDLPEG+QWRYSEFLNAVKKGKVERVRF+K+G LQLTAVDGRRASV+VPNDPDL+DILAMNGVDISVSEG+S NGL FIGNLLFP +AFAGLFFLFRR QGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG PFFSCAASEFVELFVGVGASRVRDLFEKAK+KAPCIVFIDEIDAVGRQRGAG+GGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK+LAKDVDF+KI+RRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI+DALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFG++NVTTGASNDFMQVSRVARQMVERFGFSKKIGQ+A+GG GGNPFLGQQMSSQKDYSMATADIVD+EVRELVEKAY+R+ +I+ THIDILHKLAQLLIEKE+VDGEEFMSLFIDGKAEL+VA
Sbjct: 3 STTTNPLFSSRFLGNQ-ILLSPPTPNTTK-LSSLSRRKFLVPQSILN---RKPNH-LNSIPSQATLAALIFSSITPQALAV-DTANPPNPPPVISA-EAPKPIPSNSSSPFSQNLLLTAPKPQTQTTSDLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRASVIVPNDPDLIDILAMNGVDISVSEGDSGNGLFSFIGNLLFPFLAFAGLFFLFRRSQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEDNVTTGASNDFMQVSRVARQMVERFGFSKKIGQIAIGGPGGNPFLGQQMSSQKDYSMATADIVDAEVRELVEKAYSRSKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELFVA 710
BLAST of XM_017396761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AI47 (AAA domain-containing protein {ECO:0000259|SMART:SM00382})
HSP 1 Score: 1194.87 bits (3090), Expect = 0.000e+0
Identity = 621/720 (86.25%), Postives = 668/720 (92.78%), Query Frame = 0
Match: A0A5J5AI47 (AAA domain-containing protein {ECO:0000259|SMART:SM00382})
HSP 1 Score: 1194.87 bits (3090), Expect = 0.000e+0
Identity = 621/720 (86.25%), Postives = 668/720 (92.78%), Query Frame = 0
Query: 73 MASTSNSTLSSKFLGTQLVLLSPPTPKTSSSLPSLSRKKMILTQTALNNKIKKPNSA--LQDLSTNATLATLLLSSISPQALALNDTVSPPSPAPSTTVLEAE----NPVKSSPFSQTLSLNAPVTKG-ASSDLPEGTQWRYSEFLNAVKKGKVERVRFNKEGGVLQLTAVDGRRASVVVPNDPDLVDILAMNGVDISVSEGESSNGLVGFIGNLLFPVIAFAGLFFLFRRGQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKSLAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGKENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVGGAGGNPFLGQQMSSQKDYSMATADIVDSEVRELVEKAYARATEIVNTHIDILHKLAQLLIEKESVDGEEFMSLFIDGKAELYVA 785
MAST+NS LSSKF G+Q +L+SPPTPKT+ SLP LS++K ++ Q+ L +KPN++ L++L ++ATLA L+ SS +PQALAL++T SPP VL+AE +P SSPFSQ L L AP + +S+LP+G+QWRYSEFLNAVKKGKVERVRF+K+G LQLTAVDGRRA+V+VPNDPDL+DILAMNGVDISVSEG++ NGL FIGNLLFP IAFAGLFFLFRR QGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG PFFSCAASEFVELFVGVGASRVRDLFEKAK+KAPCIVFIDEIDAVGRQRGAG+GGGNDEREQTINQLLTEMDGFSGNSGVIVL ATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK+LAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI+DALERIIAGPEKKNAVVS+EKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFG+ NVTTGASNDFMQVSRVARQMVERFGFSK+IGQVA+GGAGGNPFLGQQMSSQKDYSMATAD+VD+EVRELVEKAY+RA EIV THIDILHKLAQLLIEKE+VDGEEFMSLFIDGKAELYVA
Sbjct: 1 MASTTNSLLSSKFFGSQ-ILISPPTPKTTKSLPLLSKRKFLIPQSVLQ---EKPNNSQTLKNLPSHATLAALVFSSFAPQALALDNT-SPP-------VLQAEAPKPSPSNSSPFSQNLILTAPKPQTQTTSELPDGSQWRYSEFLNAVKKGKVERVRFSKDGSTLQLTAVDGRRATVIVPNDPDLIDILAMNGVDISVSEGDAGNGLFSFIGNLLFPFIAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLGATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGENNVTTGASNDFMQVSRVARQMVERFGFSKRIGQVAIGGAGGNPFLGQQMSSQKDYSMATADVVDAEVRELVEKAYSRAKEIVTTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVA 708
BLAST of XM_017396761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YRM9 ((ATP-dependent zinc metalloprotease FTSH, chloroplastic {ECO:0000313|RefSeq:XP_010242853.1}))
HSP 1 Score: 1194.87 bits (3090), Expect = 0.000e+0
Identity = 614/724 (84.81%), Postives = 662/724 (91.44%), Query Frame = 0
Match: A0A1U7YRM9 ((ATP-dependent zinc metalloprotease FTSH, chloroplastic {ECO:0000313|RefSeq:XP_010242853.1}))
HSP 1 Score: 1194.87 bits (3090), Expect = 0.000e+0
Identity = 614/724 (84.81%), Postives = 662/724 (91.44%), Query Frame = 0
Query: 73 MASTSNSTLSSKFLGTQLVLLSPPTPKT---SSSLPSLSRKKMILTQTALNNKIKKPNSALQDLSTNATLATLLLSSIS---PQALALNDTVSPPSPAPSTTVLEAE----NPVKSSPFSQTLSLNAPVTKGAS-SDLPEGTQWRYSEFLNAVKKGKVERVRFNKEGGVLQLTAVDGRRASVVVPNDPDLVDILAMNGVDISVSEGESSNGLVGFIGNLLFPVIAFAGLFFLFRRGQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKSLAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGKENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVGGAGGNPFLGQQMSSQKDYSMATADIVDSEVRELVEKAYARATEIVNTHIDILHKLAQLLIEKESVDGEEFMSLFIDGKAELYVA 785
MAS SN LSS FLGTQL LSPPTPKT S L ++++K ++T++ L ++ L+++ + ATLA L+ SSI+ P ALA+++ ++ PSP P+ +EAE NP SSPFSQ L L AP + S SDLPEG+QWRYSEFLNAVKKGKVERVRF+K+G LQLTAVDGRRA+V VPNDPDL+DILAMNGVDISVSEG+S NGL FIGNLLFP +AFAGLFFLFRR QGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG PFFSCAASEFVELFVGVGASRVRDLFEKAK+KAPCIVFIDEIDAVGRQRGAG+GGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD+ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK+LAKDVDF+KIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI+DALERIIAGPEKKNAVVS+EKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGK+NVTTGASNDFMQVSRVARQMVERFGFSK+IGQVA+GG GGNPFLGQQMSSQKDYSMATAD+VD+EVRELVE+AYARAT+I+ THIDILHKLAQLL+EKE+VDGEEFMSLFIDGKAELYVA
Sbjct: 1 MASISNPLLSSTFLGTQL-HLSPPTPKTTKPSFPLSLITKRKFLITKSTLKRNPISNSNTLRNIPSQATLAALIFSSIAQNPPAALAIDNNINTPSPPPA---IEAEATKANPSASSPFSQNLLLTAPKPQAQSTSDLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATVTVPNDPDLIDILAMNGVDISVSEGDSGNGLFNFIGNLLFPFLAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDAALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGKDNVTTGASNDFMQVSRVARQMVERFGFSKRIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVERAYARATQIITTHIDILHKLAQLLMEKETVDGEEFMSLFIDGKAELYVA 720
BLAST of XM_017396761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3K7C6 ((Peptidase M41 {ECO:0000313|EMBL:OMP02992.1}))
HSP 1 Score: 1194.49 bits (3089), Expect = 0.000e+0
Identity = 611/719 (84.98%), Postives = 660/719 (91.79%), Query Frame = 0
Match: A0A1R3K7C6 ((Peptidase M41 {ECO:0000313|EMBL:OMP02992.1}))
HSP 1 Score: 1194.49 bits (3089), Expect = 0.000e+0
Identity = 611/719 (84.98%), Postives = 660/719 (91.79%), Query Frame = 0
Query: 73 MASTSNSTLSSKFLGTQLVLLSPPTPKTSSSLPSLSRKKMILTQTALNNKIKKPNS--ALQDLSTNATLATLLLSSISPQALALNDTVSPPSPAPSTTVLEAE----NPVKSSPFSQTLSLNAPVTKGASSDLPEGTQWRYSEFLNAVKKGKVERVRFNKEGGVLQLTAVDGRRASVVVPNDPDLVDILAMNGVDISVSEGESSNGLVGFIGNLLFPVIAFAGLFFLFRRGQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKSLAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGKENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVGGAGGNPFLGQQMSSQKDYSMATADIVDSEVRELVEKAYARATEIVNTHIDILHKLAQLLIEKESVDGEEFMSLFIDGKAELYVA 785
M S +NS LSS F GTQL L+SPPTPKT+ ++ +TQ LN KKPNS +L+ L ++ATLA LL SS++PQALA+++ +PP+P P V+EA+ +P SPF+Q L L AP + SSDLPEG+QWRYSEFLNAVKKGKVERVRF+K+G LQLTAVDGRRA+V+VPNDPDL+DILAMNGVDISVSEG+S NGL FIGNLLFP++AFAGLFFLFRR QGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG PFFSCAASEFVELFVGVGASRVRDLF+KAK+KAPCIVFIDEIDAVGRQRGAG+GGGNDEREQTINQLLTEMDGF+GNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK+LAKDVDF+KIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI+DALERIIAGPEKKNAVVS+EKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFG+ENVTTGASNDFMQVSRVARQMVERFGFSKKIGQ+A+GG GGNPFLGQQMSSQKDYSMATAD+VD+EVRELVE AY RA +I+ THIDILH+LAQLLIEKE+VDGEEFMSLFIDGKAELYV+
Sbjct: 1 MPSMANSLLSSNFFGTQL-LISPPTPKTT--------RRFQVTQAILN---KKPNSDKSLKSLQSHATLAALLFSSVTPQALAVDN--APPTPPP---VIEAQPTRPSPSNQSPFAQNLLLTAPKPQSQSSDLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATVIVPNDPDLIDILAMNGVDISVSEGDSGNGLFNFIGNLLFPILAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFDKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFAGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQIAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHQLAQLLIEKETVDGEEFMSLFIDGKAELYVS 702
BLAST of XM_017396761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5WT00 (AAA domain-containing protein {ECO:0000259|SMART:SM00382})
HSP 1 Score: 1193.33 bits (3086), Expect = 0.000e+0
Identity = 609/713 (85.41%), Postives = 658/713 (92.29%), Query Frame = 0
Match: A0A2P5WT00 (AAA domain-containing protein {ECO:0000259|SMART:SM00382})
HSP 1 Score: 1193.33 bits (3086), Expect = 0.000e+0
Identity = 609/713 (85.41%), Postives = 658/713 (92.29%), Query Frame = 0
Query: 77 SNSTLSSKFLGTQLVLLSPPTPKTSSSLPSLSRKKMILTQTALNNKIKKPNSALQDLSTNATLATLLLSSISPQALALNDTVSPPSPAPSTTVLEAE----NPVKSSPFSQTLSLNAPVTKGASSDLPEGTQWRYSEFLNAVKKGKVERVRFNKEGGVLQLTAVDGRRASVVVPNDPDLVDILAMNGVDISVSEGESSNGLVGFIGNLLFPVIAFAGLFFLFRRGQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKSLAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGKENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVGGAGGNPFLGQQMSSQKDYSMATADIVDSEVRELVEKAYARATEIVNTHIDILHKLAQLLIEKESVDGEEFMSLFIDGKAELYVA 785
+NS LSS F GTQL LLSPPTPKT+ +K+ +TQ+ LNNK N + L ++ATLA L SS++PQALA+++ +PP+P P V+EA+ +P+ SPFSQ L L AP + SSDLPEG+QWRYSEFLNAVKKGKVERVRF+K+G VLQL+AVDGRRASV+VPNDPDL+DILAMNGVDISVSEGES+NGL FIGNLLFP +AFAGLFFLFRR QGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG PFFSCAASEFVELFVGVGASRVRDLFEKAK+KAPCIVFIDEIDAVGRQRGAG+GGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD+ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK+LAKDVDF+KIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI+DALERIIAGPEKKNAVVS+EKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYL+NQMAVALGGR+AEEVIFG+ENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVA+GG GGNPFLGQQMSSQKDYSMATAD+VD+EVR+LVE AY+RA +I+ THIDILHKLAQLL+EKE+VDGEEFMSLFIDGKAELYV+
Sbjct: 2 ANSFLSSNFFGTQL-LLSPPTPKTT--------RKLQVTQSILNNK-PNSNHTFRALQSHATLAALYFSSVTPQALAVDN--APPTPPP---VIEAQPTNPSPLNQSPFSQDLLLTAPKPQSQSSDLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSVLQLSAVDGRRASVIVPNDPDLIDILAMNGVDISVSEGESANGLFNFIGNLLFPFLAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDAALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLQNQMAVALGGRIAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRDLVETAYSRAKQIITTHIDILHKLAQLLMEKETVDGEEFMSLFIDGKAELYVS 699
BLAST of XM_017396761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2GJ09 (AAA domain-containing protein {ECO:0000259|SMART:SM00382})
HSP 1 Score: 1192.95 bits (3085), Expect = 0.000e+0
Identity = 608/713 (85.27%), Postives = 658/713 (92.29%), Query Frame = 0
Match: A0A5D2GJ09 (AAA domain-containing protein {ECO:0000259|SMART:SM00382})
HSP 1 Score: 1192.95 bits (3085), Expect = 0.000e+0
Identity = 608/713 (85.27%), Postives = 658/713 (92.29%), Query Frame = 0
Query: 77 SNSTLSSKFLGTQLVLLSPPTPKTSSSLPSLSRKKMILTQTALNNKIKKPNSALQDLSTNATLATLLLSSISPQALALNDTVSPPSPAPSTTVLEAE----NPVKSSPFSQTLSLNAPVTKGASSDLPEGTQWRYSEFLNAVKKGKVERVRFNKEGGVLQLTAVDGRRASVVVPNDPDLVDILAMNGVDISVSEGESSNGLVGFIGNLLFPVIAFAGLFFLFRRGQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKSLAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGKENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVGGAGGNPFLGQQMSSQKDYSMATADIVDSEVRELVEKAYARATEIVNTHIDILHKLAQLLIEKESVDGEEFMSLFIDGKAELYVA 785
+NS LSS F GTQL LLSPPTPKT+ +K+ +TQ+ LNNK N + L ++ATLA L SS++PQALA+++ +PP+P P V+EA+ +P+ SPFSQ L L AP + SSDLPEG+QWRYSEFLNAVKKGKVERVRF+K+G VLQL+AVDGRRASV+VPNDPDL+DILAMNGVDISVSEGES+NGL FIGNLLFP +AFAGLFFLFRR QGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG PFFSCAASEFVELFVGVGASRVRDLFEKAK+KAPCIVFIDEIDAVGRQRGAG+GGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD+ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK+LAKDVDF+KIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI+DALERIIAGPEKKNAVVS+EKKKLVAYHEAGHALVGA+MPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYL+NQMAVALGGR+AEEVIFG+ENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVA+GG GGNPFLGQQMSSQKDYSMATAD+VD+EVR+LVE AY+RA +I+ THIDILHKLAQLL+EKE+VDGEEFMSLFIDGKAELYV+
Sbjct: 2 ANSFLSSNFFGTQL-LLSPPTPKTT--------RKLQVTQSILNNK-PNSNHTFRALQSHATLAALYFSSVTPQALAVDN--APPTPPP---VIEAQPTNPSPLNQSPFSQDLLLTAPKPQSQSSDLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSVLQLSAVDGRRASVIVPNDPDLIDILAMNGVDISVSEGESANGLFNFIGNLLFPFLAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDAALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGAVMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLQNQMAVALGGRIAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRDLVETAYSRAKQIITTHIDILHKLAQLLMEKETVDGEEFMSLFIDGKAELYVS 699
BLAST of XM_017396761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3ISE8 ((Peptidase M41 {ECO:0000313|EMBL:OMO85491.1}))
HSP 1 Score: 1192.18 bits (3083), Expect = 0.000e+0
Identity = 609/719 (84.70%), Postives = 659/719 (91.66%), Query Frame = 0
Match: A0A1R3ISE8 ((Peptidase M41 {ECO:0000313|EMBL:OMO85491.1}))
HSP 1 Score: 1192.18 bits (3083), Expect = 0.000e+0
Identity = 609/719 (84.70%), Postives = 659/719 (91.66%), Query Frame = 0
Query: 73 MASTSNSTLSSKFLGTQLVLLSPPTPKTSSSLPSLSRKKMILTQTALNNKIKKPNS--ALQDLSTNATLATLLLSSISPQALALNDTVSPPSPAPSTTVLEAE----NPVKSSPFSQTLSLNAPVTKGASSDLPEGTQWRYSEFLNAVKKGKVERVRFNKEGGVLQLTAVDGRRASVVVPNDPDLVDILAMNGVDISVSEGESSNGLVGFIGNLLFPVIAFAGLFFLFRRGQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKSLAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGKENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVGGAGGNPFLGQQMSSQKDYSMATADIVDSEVRELVEKAYARATEIVNTHIDILHKLAQLLIEKESVDGEEFMSLFIDGKAELYVA 785
M S ++S LSS F GTQL L+SPPTPKT+ ++ +TQ LN KKPNS + + L ++ATLA LL SS++PQALA+++ +PP+P P V+EA+ +P SPF+Q L L AP + SSDLPEG+QWRYSEFLNAVKKGKVERVRF+K+G LQLTAVDGRRA+V+VPNDPDL+DILAMNGVDISVSEG+S NGL FIGNLLFP++AFAGLFFLFRR QGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG PFFSCAASEFVELFVGVGASRVRDLF+KAK+KAPCIVFIDEIDAVGRQRGAG+GGGNDEREQTINQLLTEMDGF+GNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK+LAKDVDF+KIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI+DALERIIAGPEKKNAVVS+EKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFG+ENVTTGASNDFMQVSRVARQMVERFGFSKKIGQ+A+GG GGNPFLGQQMSSQKDYSMATAD+VD+EVRELVE AY RA +I+ THIDILH+LAQLLIEKE+VDGEEFMSLFIDGKAELYV+
Sbjct: 1 MPSMASSLLSSNFFGTQL-LISPPTPKTT--------RRFQVTQAILN---KKPNSETSFKSLQSHATLAALLFSSVTPQALAVDN--APPTPPP---VIEAQPTKPSPSNQSPFAQNLLLTAPKPQSQSSDLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATVIVPNDPDLIDILAMNGVDISVSEGDSGNGLFNFIGNLLFPILAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFDKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFAGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQIAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHQLAQLLIEKETVDGEEFMSLFIDGKAELYVS 702
| Match Name | Stats | Description |
|---|---|---|
| A0A6L5BE70 | E-Value: 0.000e+0, PID: 88.92 | AAA domain-containing protein {ECO:0000259|SMART:S... [more] |
| A0A2R6RME1 | E-Value: 0.000e+0, PID: 85.89 | (ATP-dependent zinc metalloprotease {ECO:0000313|E... [more] |
| A0A6I9UHD2 | E-Value: 0.000e+0, PID: 85.73 | (ATP-dependent zinc metalloprotease FTSH, chloropl... [more] |
| A0A7J0DCH1 | E-Value: 0.000e+0, PID: 85.89 | (FTSH protease 1 {ECO:0000313|EMBL:GFS31921.1})[more] |
| A0A5J5AI47 | E-Value: 0.000e+0, PID: 86.25 | AAA domain-containing protein {ECO:0000259|SMART:S... [more] |
| A0A1U7YRM9 | E-Value: 0.000e+0, PID: 84.81 | (ATP-dependent zinc metalloprotease FTSH, chloropl... [more] |
| A0A1R3K7C6 | E-Value: 0.000e+0, PID: 84.98 | (Peptidase M41 {ECO:0000313|EMBL:OMP02992.1})[more] |
| A0A2P5WT00 | E-Value: 0.000e+0, PID: 85.41 | AAA domain-containing protein {ECO:0000259|SMART:S... [more] |
| A0A5D2GJ09 | E-Value: 0.000e+0, PID: 85.27 | AAA domain-containing protein {ECO:0000259|SMART:S... [more] |
| A0A1R3ISE8 | E-Value: 0.000e+0, PID: 84.70 | (Peptidase M41 {ECO:0000313|EMBL:OMO85491.1})[more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |