MASSSSADDFSVFVLASDLGVDARPFLQDKWHDCPTQLDHDIAPDDLQYF
SHLDALHFLSLQPGFDKSGNRIFRIVGKYFPAPVVDAERLKKYVVHKISN
EMPEGPFCIVYMHTTVQKDDNSPGMSILRWIYEELTADIKDRLQVVYFIH
PGLRSRLVFATLGRLLLSGGLYWKIKYISRLEYLWEDVKKGDVDIPQFVQ
EHDKILENRPLTDYGIEPDPLHLTAIPSAGYPFGRFEERWSSREYMS
| Relationships |
|---|
| The polypeptide, XM_017398376.1, derives from mRNA, XM_017398376.1. |
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A5J4ZH86 (CRAL-TRIO domain-containing protein {ECO:0000259|SMART:SM00516})
HSP 1 Score: 380.563 bits (976), Expect = 1.523e-132
Identity = 184/254 (72.44%), Postives = 211/254 (83.07%), Query Frame = 0
Query: 4 SSSADDFSVFVLASDLGVDARPFL----------QDKWHDCPTQLDHDIAPDDLQYFSHLDALHFLSLQPGFDKSGNRIFRIVGKYFPAPVVDAERLKKYVVHKISNEMPEGPFCIVYMHTTVQKDDNSPGMSILRWIYEELTADIKDRLQVVYFIHPGLRSRLVFATLGRLLLSGGLYWKIKYISRLEYLWEDVKKGDVDIPQFVQEHDKILENRPLTDYGIEPDPLHLTAIPSAGYPFGRFEERWSSREYMS 247
SSS DDFSV VLASDLG+DARPFL ++ WHDCP+ I+ +D FS LDAL F L+ G +KSGNRIFRIVGKY PAPVV ERLKKY+ HKI +EMPEGP+CIVYMH+TVQK+DNSPG++ILRWIYEEL ++ KDRLQ+VYFIHPGLRSRLVFATLGR LSGGLYWKIKYISRL+YLWED+KKG+V+IP+FVQ HD +LE+RPLTDYGIEPDPLHLT IPS Y FGR+EERW+SREYMS
Sbjct: 3 SSSTDDFSVVVLASDLGIDARPFLSSTDRDAEVPEENWHDCPSYF---ISDED---FSDLDALQFFRLERGSNKSGNRIFRIVGKYLPAPVVSGERLKKYIFHKIFSEMPEGPYCIVYMHSTVQKEDNSPGLTILRWIYEELPSEHKDRLQIVYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYISRLQYLWEDIKKGEVEIPEFVQSHDDVLEHRPLTDYGIEPDPLHLTEIPSTAYSFGRYEERWTSREYMS 250
Match: A0A5J4ZL95 (CRAL-TRIO domain-containing protein {ECO:0000259|SMART:SM00516})
HSP 1 Score: 380.178 bits (975), Expect = 3.145e-132
Identity = 184/254 (72.44%), Postives = 210/254 (82.68%), Query Frame = 0
Query: 4 SSSADDFSVFVLASDLGVDARPFL----------QDKWHDCPTQLDHDIAPDDLQYFSHLDALHFLSLQPGFDKSGNRIFRIVGKYFPAPVVDAERLKKYVVHKISNEMPEGPFCIVYMHTTVQKDDNSPGMSILRWIYEELTADIKDRLQVVYFIHPGLRSRLVFATLGRLLLSGGLYWKIKYISRLEYLWEDVKKGDVDIPQFVQEHDKILENRPLTDYGIEPDPLHLTAIPSAGYPFGRFEERWSSREYMS 247
SSS DDFSV VLASDLG+DARPFL ++ W DCP+ I+ +D FS LDAL F L+ G DKSGNRIFRIVGKY PAPVV ERLKKY+ HKI +EMPEGP+CIVYMH+TVQK+DNSPG++ILRWIYEEL ++ KDRLQ+VYFIHPGLRSRLVFATLGR LSGGLYWKIKYISRL+YLWED+KKG+V+IP+FVQ HD +LE+RPLTDYGIEPDPLHLT IPS Y FGR+EERW+SREYMS
Sbjct: 17 SSSTDDFSVVVLASDLGIDARPFLSSSDRDAEVPEENWQDCPSYF---ISDED---FSDLDALQFFRLERGSDKSGNRIFRIVGKYLPAPVVSGERLKKYIFHKIFSEMPEGPYCIVYMHSTVQKEDNSPGLTILRWIYEELPSEHKDRLQIVYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYISRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEIPSTAYSFGRYEERWTSREYMS 264
Match: A0A5B7BCR5 ((Putative ganglioside-induced differentiation-associated protein 2 {ECO:0000313|EMBL:MPA66662.1}))
HSP 1 Score: 375.555 bits (963), Expect = 1.460e-130
Identity = 179/251 (71.31%), Postives = 205/251 (81.67%), Query Frame = 0
Query: 4 SSSADDFSVFVLASDLGVDARPFL----------QDKWHDCPTQLDHDIAPDDLQYFSHLDALHFLSLQPGFDKSGNRIFRIVGKYFPAPVVDAERLKKYVVHKISNEMPEGPFCIVYMHTTVQKDDNSPGMSILRWIYEELTADIKDRLQVVYFIHPGLRSRLVFATLGRLLLSGGLYWKIKYISRLEYLWEDVKKGDVDIPQFVQEHDKILENRPLTDYGIEPDPLHLTAIPSAGYPFGRFEERWSSRE 244
SSS+DDFSV VLASDLG+DARPFL ++ WHDCP+ D + FS L+AL F L+ G DK GNRIFRIVGKYFPAPVV ERLKKY+ HKI EMPEGP+CIVYMH+TVQK+DNSPG++ILRWIYEEL +D KDRLQ++YFIHPGLRSRLVFATLGR LSGGLYWKIKYISRL+YLWED+KKG+V+IP+FVQ HD +LE+RPLTDYGIEPDP HLT IPS Y FGR+EERW+SRE
Sbjct: 3 SSSSDDFSVLVLASDLGIDARPFLSPSDQEKESPEENWHDCPSYFVSD------EDFSDLEALQFFRLESGCDKFGNRIFRIVGKYFPAPVVSGERLKKYIFHKIFTEMPEGPYCIVYMHSTVQKEDNSPGLTILRWIYEELPSDCKDRLQIMYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYISRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPFHLTEIPSTAYSFGRYEERWTSRE 247
Match: A0A6J1A6E2 ((ganglioside-induced differentiation-associated protein 2 {ECO:0000313|RefSeq:XP_021282548.1}))
HSP 1 Score: 374.4 bits (960), Expect = 3.070e-130
Identity = 183/254 (72.05%), Postives = 210/254 (82.68%), Query Frame = 0
Query: 3 SSSSADDFSVFVLASDLGVDARPFL---------QDKWHDCPTQLDHDIAPDDLQYFSHLDALHFLSLQPGFDKSGNRIFRIVGKYFPAPVVDAERLKKYVVHKISNEMPEGPFCIVYMHTTVQKDDNSPGMSILRWIYEELTADIKDRLQVVYFIHPGLRSRLVFATLGRLLLSGGLYWKIKYISRLEYLWEDVKKGDVDIPQFVQEHDKILENRPLTDYGIEPDPLHLTAIPSAGYPFGRFEERWSSREYMS 247
SSS DDFSV VLASDLGVDARPFL QD WHDC D + +D FS LD LHF Q G DKSGNRI RIVGKYFPAPVV ERLKKY+ HKI +E+PEGPFCIVY+H+TVQK+DNSPG++I+RWIYEEL ++IKDRLQVVYFIHPGLRSRLVFATLGRL LSGGLYWKIKY++RL+YLW+D+KKG+V+IP+FVQ HDK+LE+RPLTDYGIEPDPLHLT +PSA Y GR+EER +SRE+MS
Sbjct: 2 GSSSNDDFSVVVLASDLGVDARPFLANQDREIEDQDNWHDC----SQDFSDED---FSDLDVLHFFRFQ-GSDKSGNRIIRIVGKYFPAPVVSGERLKKYIFHKICSELPEGPFCIVYVHSTVQKEDNSPGVTIMRWIYEELPSEIKDRLQVVYFIHPGLRSRLVFATLGRLFLSGGLYWKIKYVNRLQYLWDDIKKGEVEIPEFVQNHDKVLEHRPLTDYGIEPDPLHLTEVPSAAYSLGRYEERLASREFMS 247
Match: A0A061EVD9 ((SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 1 {ECO:0000313|EMBL:EOY09060.1}))
HSP 1 Score: 373.629 bits (958), Expect = 5.427e-130
Identity = 182/254 (71.65%), Postives = 207/254 (81.50%), Query Frame = 0
Query: 3 SSSSADDFSVFVLASDLGVDARPFL---------QDKWHDCPTQLDHDIAPDDLQYFSHLDALHFLSLQPGFDKSGNRIFRIVGKYFPAPVVDAERLKKYVVHKISNEMPEGPFCIVYMHTTVQKDDNSPGMSILRWIYEELTADIKDRLQVVYFIHPGLRSRLVFATLGRLLLSGGLYWKIKYISRLEYLWEDVKKGDVDIPQFVQEHDKILENRPLTDYGIEPDPLHLTAIPSAGYPFGRFEERWSSREYMS 247
SSS DDFSV VLASDLG+DARPFL QD WHDC + PD LD LHF LQ G DKSGNRIFRIVGKYFPAPV+ ERLKKY+ HKI +E+PEGPFCIVYMH+TVQK+DNSPG++ILRWIYEEL ++IKDRLQVVYFIHPGL SRLVFATLGRL LSGGLYWKIKY+SRL+YLW+D+KKG+V+IP+FVQ HD +LE+RPLTDYGIEPDPLHLT +PSA Y GR+EER +SRE+MS
Sbjct: 2 GSSSNDDFSVVVLASDLGIDARPFLANQDREIEDQDNWHDCSQDFSDEDFPD-------LDVLHFFRLQ-GSDKSGNRIFRIVGKYFPAPVISGERLKKYIFHKICSELPEGPFCIVYMHSTVQKEDNSPGVTILRWIYEELPSEIKDRLQVVYFIHPGLCSRLVFATLGRLFLSGGLYWKIKYVSRLQYLWDDIKKGEVEIPEFVQNHDNVLEHRPLTDYGIEPDPLHLTEVPSAAYSLGRYEERLASREFMS 247
Match: A0A6I9T4W7 ((ganglioside-induced differentiation-associated protein 2 {ECO:0000313|RefSeq:XP_011078925.1}))
HSP 1 Score: 373.244 bits (957), Expect = 9.819e-130
Identity = 181/253 (71.54%), Postives = 208/253 (82.21%), Query Frame = 0
Query: 3 SSSSADDFSVFVLASDLGVDARPFL--------QDKWHDCPTQLDHDIAPDDLQYFSHLDALHFLSLQPGFDKSGNRIFRIVGKYFPAPVVDAERLKKYVVHKISNEMPEGPFCIVYMHTTVQKDDNSPGMSILRWIYEELTADIKDRLQVVYFIHPGLRSRLVFATLGRLLLSGGLYWKIKYISRLEYLWEDVKKGDVDIPQFVQEHDKILENRPLTDYGIEPDPLHLTAIPSAGYPFGRFEERWSSREYMS 247
+SSS+DDFSV VLASDLG+DARPFL +D WHDCP+ L A D FS LDAL FL L+ G DK+GNRI R+VGKYFPAPV+ ERLKKYV HKIS E+P+GPFCIVYMH+TVQK+DNSPG++ILRWIYEEL D KDRLQVVYFIHPGLRSRLVFATLGR LLSGGLYWKIKY+SRL+YLW+D+KKG+V+IP+FV+EHD ILE+RPLTDYGIEPDPLHL +PS Y GR+E W+SRE S
Sbjct: 2 ASSSSDDFSVMVLASDLGIDARPFLSHSPQPPEEDNWHDCPSYLPS--ADDQNLDFSDLDALQFLRLERGSDKAGNRILRVVGKYFPAPVITGERLKKYVFHKISTEVPDGPFCIVYMHSTVQKEDNSPGITILRWIYEELPNDYKDRLQVVYFIHPGLRSRLVFATLGRFLLSGGLYWKIKYVSRLQYLWQDIKKGEVEIPEFVKEHDDILEHRPLTDYGIEPDPLHLMEVPSTAYSLGRYEAEWASRECRS 252
Match: A0A3N7F167 (CRAL-TRIO domain-containing protein {ECO:0000259|SMART:SM00516})
HSP 1 Score: 370.933 bits (951), Expect = 1.035e-128
Identity = 180/258 (69.77%), Postives = 207/258 (80.23%), Query Frame = 0
Query: 3 SSSSADDFSVFVLASDLGVDARPFLQDK-------------WHDCPTQLDHDIAPDDLQYFSHLDALHFLSLQPGFDKSGNRIFRIVGKYFPAPVVDAERLKKYVVHKISNEMPEGPFCIVYMHTTVQKDDNSPGMSILRWIYEELTADIKDRLQVVYFIHPGLRSRLVFATLGRLLLSGGLYWKIKYISRLEYLWEDVKKGDVDIPQFVQEHDKILENRPLTDYGIEPDPLHLTAIPSAGYPFGRFEERWSSREYMS 247
++SS+DDFSVFVLASDLG+DARPFL +K WHDC I+ +D FS LD L F +LQ G DKSGNR+FRIVGKYFPA VV ERLKKY+ HKI +E+PEGP CIVYMH+TVQK+DNSPG++ILRWIYEEL A IKDRLQ VYFIHPGLRSRLVFATLGR LSGGLYWKIKY+SRL+YLWED+KKG+++IP+FVQ HD ILENRPLTDYGIEPDP HL+ +P Y FGR+EERWSSRE+ S
Sbjct: 2 ATSSSDDFSVFVLASDLGIDARPFLTNKEREQNQENPEPENWHDCCQDF---ISDED---FSDLDLLQFFTLQ-GSDKSGNRVFRIVGKYFPAQVVSGERLKKYIFHKICSELPEGPLCIVYMHSTVQKEDNSPGVTILRWIYEELPAGIKDRLQTVYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYVSRLQYLWEDIKKGEIEIPEFVQNHDNILENRPLTDYGIEPDPFHLSEMPMTAYSFGRYEERWSSREFAS 252
Match: A0A834FTP6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7112561.1}))
HSP 1 Score: 370.548 bits (950), Expect = 1.948e-128
Identity = 175/266 (65.79%), Postives = 209/266 (78.57%), Query Frame = 0
Query: 1 MASSSSADDFSVFVLASDLGVDARPFLQ-------------------DKWHDCPTQLDHDIAPDDLQYFSHLDALHFLSLQPGFDKSGNRIFRIVGKYFPAPVVDAERLKKYVVHKISNEMPEGPFCIVYMHTTVQKDDNSPGMSILRWIYEELTADIKDRLQVVYFIHPGLRSRLVFATLGRLLLSGGLYWKIKYISRLEYLWEDVKKGDVDIPQFVQEHDKILENRPLTDYGIEPDPLHLTAIPSAGYPFGRFEERWSSREYMS 247
M SS+++DFSVFVLASDLG+DARPFL D WHDCP+ L D + FS L+ L F L+ G DK GNRIFRIVGKY+PAPVV ERLKK+V HKI+ EMPEGPFCIVYMH+TVQK+DN+PG++ILRWIYEEL +D KDRLQ VYFIHPGLRSRLV ATLGR L+GGLYWKIKY+SRL+YLWED++KG+++IP+FVQ HD ILE+RPLTDYGIEPDP HLT +P++ Y FGRF+ERW++RE+MS
Sbjct: 1 MGGSSTSEDFSVFVLASDLGIDARPFLTATERQTAEGHHQSLPAPADDNWHDCPSDLPAD------EDFSDLEFLQFFRLEDGSDKDGNRIFRIVGKYYPAPVVAGERLKKFVFHKINTEMPEGPFCIVYMHSTVQKEDNNPGLTILRWIYEELPSDCKDRLQAVYFIHPGLRSRLVIATLGRFFLTGGLYWKIKYVSRLQYLWEDIRKGEIEIPEFVQNHDDILEDRPLTDYGIEPDPFHLTMMPTSAYSFGRFDERWATREFMS 260
Match: A0A834LUN3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7147508.1}))
HSP 1 Score: 370.163 bits (949), Expect = 2.478e-128
Identity = 175/266 (65.79%), Postives = 209/266 (78.57%), Query Frame = 0
Query: 1 MASSSSADDFSVFVLASDLGVDARPFLQ-------------------DKWHDCPTQLDHDIAPDDLQYFSHLDALHFLSLQPGFDKSGNRIFRIVGKYFPAPVVDAERLKKYVVHKISNEMPEGPFCIVYMHTTVQKDDNSPGMSILRWIYEELTADIKDRLQVVYFIHPGLRSRLVFATLGRLLLSGGLYWKIKYISRLEYLWEDVKKGDVDIPQFVQEHDKILENRPLTDYGIEPDPLHLTAIPSAGYPFGRFEERWSSREYMS 247
M SS+++DFSVFVLASDLG+DARPFL D WHDCP+ L D + FS L+ L F L+ G DK GNRIFRIVGKY+PAPVV ERLKK+V HKI+ EMPEGPFCIVYMH+TVQK+DN+PG++ILRWIYEEL +D KDRLQ VYFIHPGLRSRLV ATLGR L+GGLYWKIKY+SRL+YLWED++KG+++IP+FVQ HD ILE+RPLTDYGIEPDP HLT IP++ Y FGR++ERW++RE+MS
Sbjct: 1 MGGSSTSEDFSVFVLASDLGIDARPFLSATERQTAEGHHQSLPAPADDNWHDCPSDLPAD------EDFSDLEFLQFFRLEDGSDKDGNRIFRIVGKYYPAPVVAGERLKKFVFHKINTEMPEGPFCIVYMHSTVQKEDNNPGLTILRWIYEELPSDCKDRLQAVYFIHPGLRSRLVIATLGRFFLTGGLYWKIKYVSRLQYLWEDIRKGEIEIPEFVQNHDDILEDRPLTDYGIEPDPFHLTEIPTSAYSFGRYDERWATREFMS 260
Match: A0A7J0FBQ5 ((SEC14 cytosolic factor family protein {ECO:0000313|EMBL:GFY96154.1}))
HSP 1 Score: 369.392 bits (947), Expect = 2.829e-128
Identity = 178/251 (70.92%), Postives = 206/251 (82.07%), Query Frame = 0
Query: 4 SSSADDFSVFVLASDLGVDARPFL-------QDKWHDCPTQLDHDIAPDDLQYFSHLDALHFLSLQPGFDKSGNRIFRIVGKYFPAPVVDAERLKKYVVHKISNEMPEGPFCIVYMHTTVQKDDNSPGMSILRWIYEELTADIKDRLQVVYFIHPGLRSRLVFATLGRLLLSGGLYWKIKYISRLEYLWEDVKKGDVDIPQFVQEHDKILENRPLTDYGIEPDPLHLTAIPSAGYPFGRFEERWSSREYMS 247
SS+++DFSV VLASDLGVDARPFL ++ WHDCP D D FS L+AL F L+ G DKSGNRIFRIVGKYFPAPV+ ERLK+YV HKI +EMPEGPFCIVY H+TVQK+DN+PG++ILRWIYE+L +D KDRLQ VYFIHPGLRSRLV ATLGR LLSGGLYWKIKY+SRL+YLWED+KKGDV+IP+FVQ HD ILE+RPLTDYGIEPDP HLT +PS Y GR+EERW+S+E+MS
Sbjct: 3 SSTSEDFSVLVLASDLGVDARPFLSQSDAAPEENWHDCP---DED--------FSDLEALQFFRLETGSDKSGNRIFRIVGKYFPAPVICGERLKRYVFHKIYSEMPEGPFCIVYFHSTVQKEDNNPGLTILRWIYEDLPSDSKDRLQAVYFIHPGLRSRLVIATLGRFLLSGGLYWKIKYVSRLQYLWEDIKKGDVEIPEFVQNHDDILEHRPLTDYGIEPDPFHLTEMPSTAYSLGRYEERWASKEFMS 242
| Match Name | Stats | Description |
|---|---|---|
| A0A5J4ZH86 | E-Value: 1.523e-132, PID: 72.44 | CRAL-TRIO domain-containing protein {ECO:0000259|S... [more] |
| A0A5J4ZL95 | E-Value: 3.145e-132, PID: 72.44 | CRAL-TRIO domain-containing protein {ECO:0000259|S... [more] |
| A0A5B7BCR5 | E-Value: 1.460e-130, PID: 71.31 | (Putative ganglioside-induced differentiation-asso... [more] |
| A0A6J1A6E2 | E-Value: 3.070e-130, PID: 72.05 | (ganglioside-induced differentiation-associated pr... [more] |
| A0A061EVD9 | E-Value: 5.427e-130, PID: 71.65 | (SEC14 cytosolic factor family protein / phosphogl... [more] |
| A0A6I9T4W7 | E-Value: 9.819e-130, PID: 71.54 | (ganglioside-induced differentiation-associated pr... [more] |
| A0A3N7F167 | E-Value: 1.035e-128, PID: 69.77 | CRAL-TRIO domain-containing protein {ECO:0000259|S... [more] |
| A0A834FTP6 | E-Value: 1.948e-128, PID: 65.79 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7112... [more] |
| A0A834LUN3 | E-Value: 2.478e-128, PID: 65.79 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7147... [more] |
| A0A7J0FBQ5 | E-Value: 2.829e-128, PID: 70.92 | (SEC14 cytosolic factor family protein {ECO:000031... [more] |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |