Resource Type:
Polypeptide
Name:
XM_017397907.1
Identifier:
XM_017397907.1-protein
Sequence:
MGDEMPNANTMNLDLNLGPVVNPDEEIGSGESMNLEEWLGRPVNRLRETF
MRQRASRPRAGQRWRSVWRPVPIPPETRDLALELMAGAGLEMGEGSVAPA
ERPSEETKVCDTNNGYLENEALGKKDNDEKGNGEDGSFFDCNICLDLAKE
PVVTCCGHLFCWPCLYRWLHLHSDAKECPICKGEVTMKNLTPIYGRGNNS
KQEPEDESSLKIPQRPQARRVESWRQAFQRNAFTIPMEEMIRRLGNRFDL
SRDVAQGNPRNTGSPRVSPERSNLLLNRFLTSRGMRREQNVGLPSEEAVD
LSQSSPTNSEVVESLRVLRRSHPHRAAVISNFTSALSSAERLVESYFRSH
PAENVDDRDSVSSIAAVIQSESQTVDTAVEIDSRVSLSTSSSRRRHDASR
ISDVDSGDSRAPRRRRLN
Sequence Length:
418
Sequence Checksum:
49cfec419197ea9bf20265c74061cfca
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017397907.1, derives from mRNA, XM_017397907.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017397907.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017397907.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EUM8 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 547.354 bits (1409), Expect = 0.000e+0
Identity = 295/441 (66.89%), Postives = 340/441 (77.10%), Query Frame = 0
Match: A0A4S4EUM8 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 547.354 bits (1409), Expect = 0.000e+0
Identity = 295/441 (66.89%), Postives = 340/441 (77.10%), Query Frame = 0
Query: 1 MGDEMPNANTMNLDLNLGPVVNPDEEIGSGE----SMNLEEWLGRPVNRLRETFMRQRASRPRAGQRWRSVWRPVPIPPETRDLALELMAGAG------LEMGEGSVAPAERPSEETKVCDTNNGYLENEALGKKDNDEKGNGEDGSFFDCNICLDLAKEPVVTCCGHLFCWPCLYRWLHLHSDAKECPICKGEVTMKNLTPIYGRGNNSKQEPEDESSLKIPQRPQARRVESWRQAFQRNAFTIPMEEMIRRLGNRFDLSRDVAQGNPRNTGSPRVSPERSNLLLNRFLTSRGMRREQNV--GLPSEEAVDLSQSSPTNSEVVESL----RVLRRSHPHRAAVISNFTSALSSAERLVESYFRSHPAEN-------VDDRDSVSSIAAVIQSESQTVDTAVEIDSRVSLSTSSSRRRHDASRISDVDSGDSRAPRRRRLN 418
M DE+PN TMNLDLNLGP +PD+E GSG +MNLEEW+ VNRLRET R R QRWRSV R PIPPETR++A+ELMA +G L+ GEGSV+P ER +E K C+ N +ENE+LGKK+N+EKGNGEDGSFFDCNICLDLA++PVVTCCGHLFCWPCLY+W+H+HSDA+ECP+CKGEVT K +TPIYGRG+N++ E E++ SLKIP RPQ RR+ESWRQ QRNAFTIPMEEMIRRLG+RFDL+RD+ Q P+N+ S R SPER+N LLNR LTSRG+RREQN VDL+QSSPTNSEV ES +LRRSH HRA+ ISN TSALSSA ESYFR H E VDDRDS+SSIAA I SESQTVD AVEIDS V+LSTSSSRRR+DASR+SDVDSGDSRA RRRRLN
Sbjct: 1 MEDEIPN--TMNLDLNLGPSPSPDDEPGSGSLSSGTMNLEEWIDGRVNRLRETL------RLRNRQRWRSVRRQGPIPPETRNIAMELMANSGNAAVGSLQTGEGSVSPEERNAELIKTCENNATDVENESLGKKENEEKGNGEDGSFFDCNICLDLARDPVVTCCGHLFCWPCLYQWIHVHSDARECPVCKGEVTTKTVTPIYGRGSNNR-ELEEDPSLKIPLRPQGRRIESWRQTIQRNAFTIPMEEMIRRLGSRFDLTRDLVQALPQNSESARNSPERNNSLLNRILTSRGIRREQNTVVPPDDVVDVDLTQSSPTNSEVGESRWLSSLLLRRSHTHRASTISNLTSALSSA----ESYFRFHNVERNQEQPPPVDDRDSMSSIAAAIHSESQTVDNAVEIDSTVALSTSSSRRRNDASRVSDVDSGDSRAHRRRRLN 428
BLAST of XM_017397907.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GKC0 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 546.969 bits (1408), Expect = 0.000e+0
Identity = 295/441 (66.89%), Postives = 340/441 (77.10%), Query Frame = 0
Match: A0A7J7GKC0 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 546.969 bits (1408), Expect = 0.000e+0
Identity = 295/441 (66.89%), Postives = 340/441 (77.10%), Query Frame = 0
Query: 1 MGDEMPNANTMNLDLNLGPVVNPDEEIGSGE----SMNLEEWLGRPVNRLRETFMRQRASRPRAGQRWRSVWRPVPIPPETRDLALELMAGAG------LEMGEGSVAPAERPSEETKVCDTNNGYLENEALGKKDNDEKGNGEDGSFFDCNICLDLAKEPVVTCCGHLFCWPCLYRWLHLHSDAKECPICKGEVTMKNLTPIYGRGNNSKQEPEDESSLKIPQRPQARRVESWRQAFQRNAFTIPMEEMIRRLGNRFDLSRDVAQGNPRNTGSPRVSPERSNLLLNRFLTSRGMRREQNV--GLPSEEAVDLSQSSPTNSEVVESL----RVLRRSHPHRAAVISNFTSALSSAERLVESYFRSHPAEN-------VDDRDSVSSIAAVIQSESQTVDTAVEIDSRVSLSTSSSRRRHDASRISDVDSGDSRAPRRRRLN 418
M DE+PN TMNLDLNLGP +PD+E GSG +MNLEEW+ VNRLRET R R QRWRSV R PIPPETR++A+ELMA +G L+ GEGSV+P ER +E K C+ N +ENE+LGKK+N+EKGNGEDGSFFDCNICLDLA++PVVTCCGHLFCWPCLY+W+H+HSDA+ECP+CKGEVT K +TPIYGRG+N++ E E++ SLKIP RPQ RR+ESWRQ QRNAFTIPMEEMIRRLG+RFDL+RD+ Q P+N+ S R SPER+N LLNR LTSRG+RREQN VDL+QSSPTNSEV ES +LRRSH HRA+ ISN TSALSSA ESYFR H E VDDRDS+SSIAA I SESQTVD AVEIDS V+LSTSSSRRR+DASR+SDVDSGDSRA RRRRLN
Sbjct: 1 MEDEIPN--TMNLDLNLGPSPSPDDEPGSGSLSSATMNLEEWIDGRVNRLRETL------RLRNRQRWRSVRRQGPIPPETRNIAMELMANSGNAGVGSLQTGEGSVSPEERNAELIKTCENNATDVENESLGKKENEEKGNGEDGSFFDCNICLDLARDPVVTCCGHLFCWPCLYQWIHVHSDARECPVCKGEVTTKTVTPIYGRGSNNR-ELEEDPSLKIPPRPQGRRIESWRQTIQRNAFTIPMEEMIRRLGSRFDLTRDLVQALPQNSESARNSPERNNSLLNRILTSRGIRREQNTVVPPDDVVDVDLTQSSPTNSEVGESRWLSSLLLRRSHTHRASTISNLTSALSSA----ESYFRFHNVERNQEQPPPVDDRDSMSSIAAAIHSESQTVDNAVEIDSTVALSTSSSRRRNDASRVSDVDSGDSRAHRRRRLN 428
BLAST of XM_017397907.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0HCS4 ((RING/U-box superfamily protein {ECO:0000313|EMBL:GFZ20930.1}))
HSP 1 Score: 533.102 bits (1372), Expect = 0.000e+0
Identity = 302/444 (68.02%), Postives = 340/444 (76.58%), Query Frame = 0
Match: A0A7J0HCS4 ((RING/U-box superfamily protein {ECO:0000313|EMBL:GFZ20930.1}))
HSP 1 Score: 533.102 bits (1372), Expect = 0.000e+0
Identity = 302/444 (68.02%), Postives = 340/444 (76.58%), Query Frame = 0
Query: 1 MGDEMPNANTMNLDLNLGPVVNPDEEIGSG----ESMNLEEWLGRP-VNRLRETFMRQRASRPRAGQRWRSVWRPVPIPPETRDLALELM---------AGAGLEMGEGSVAPAERPSEETKVCDTNNGYLENEALGKKDNDEKGNGEDGSFFDCNICLDLAKEPVVTCCGHLFCWPCLYRWLHLHSDAKECPICKGEVTMKNLTPIYGRGNNSKQEPEDESSLKIPQRPQARRVESWRQAFQRNAFTIPMEEMIRRLGNRFDLSRDVAQGNPRNTGSPRVSPERSNLLLNRFLTSRGMRREQNVGLPSEEAVD--LSQSSPTNSEVVESLR---VLRRSHPHRAAVISNFTSALSSAERLVESYFRSHPAE-------NVDDRDSVSSIAAVIQSESQTVDTAVEIDSRVSLSTSSSRRRHDASRISDVDSGDSRAPRRRRLN 418
MGDE+PNA MNLDLNLGP +PD E+GSG ES+NLE+W+ R NR RE A R RA QR RS RPV IPPE R++ALELM AG GL+ GEGSV+ R E K C+ N + N+ LGKK+++EKGNGE+GSFFDCNICLDLA+ PVVTCCGHLFCWPCLYRWLH+HSDAKECP+CKGEV +KNLTPIYGRG NS EPE++ +LKIP RPQARR+ESWRQ QRNAFTIPMEEMIRRLG RFDL+RD+ Q P+NT S R SPER+N LLNR LTSRGMRREQN +P E+ VD L+ +SPTNS+V ES R + RRSH HRAA ISN TSALSS ER VESYF H AE VDDRDSVSSIAA I SESQTVDTAVEIDS VSLSTSSSRRR+DASR+SDVDSG+SRA RRRRLN
Sbjct: 1 MGDEIPNA--MNLDLNLGPSPSPDNELGSGSLSNESVNLEDWIDRQQYNRYRE------ALRIRARQRLRSFLRPVSIPPEARNIALELMINSSNGGGAAGGGLQTGEGSVSSEGRNDEAIKTCENNVTHEGNDVLGKKEDEEKGNGEEGSFFDCNICLDLARNPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVAIKNLTPIYGRG-NSIHEPEEDPTLKIPSRPQARRIESWRQTIQRNAFTIPMEEMIRRLGRRFDLTRDLVQVQPQNTDSVRESPERNNSLLNRILTSRGMRREQNTVIPQEDIVDVGLTPTSPTNSDVGESRRFSSLFRRSHAHRAATISNLTSALSSPERFVESYFHYHHAEINHEQPPPVDDRDSVSSIAAAIHSESQTVDTAVEIDSTVSLSTSSSRRRNDASRVSDVDSGESRAYRRRRLN 435
BLAST of XM_017397907.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P2P7 ((E3 ubiquitin-protein like {ECO:0000313|EMBL:PSR84560.1}))
HSP 1 Score: 518.464 bits (1334), Expect = 0.000e+0
Identity = 293/444 (65.99%), Postives = 335/444 (75.45%), Query Frame = 0
Match: A0A2R6P2P7 ((E3 ubiquitin-protein like {ECO:0000313|EMBL:PSR84560.1}))
HSP 1 Score: 518.464 bits (1334), Expect = 0.000e+0
Identity = 293/444 (65.99%), Postives = 335/444 (75.45%), Query Frame = 0
Query: 1 MGDEMPNANTMNLDLNLGPVVNPDEEIGSG----ESMNLEEWLGRP-VNRLRETFMRQRASRPRAGQRWRSVWRPVPIPPETRDLALELMAGAG---------LEMGEGSVAPAERPSEETKVCDTNNGYLENEALGKKDNDEKGNGEDGSFFDCNICLDLAKEPVVTCCGHLFCWPCLYRWLHLHSDAKECPICKGEVTMKNLTPIYGRGNNSKQEPEDESSLKIPQRPQARRVESWRQAFQRNAFTIPMEEMIRRLGNRFDLSRDVAQGNPRNTGSPRVSPERSNLLLNRFLTSRGMRREQNVGLPSEEAVD--LSQSSPTNSEVVESLR---VLRRSHPHRAAVISNFTSALSSAERLVESYFRSHPAE-------NVDDRDSVSSIAAVIQSESQTVDTAVEIDSRVSLSTSSSRRRHDASRISDVDSGDSRAPRRRRLN 418
MGDE+PNA MNLDLNLGP +PD E+GSG ES+NLE+W+ R NR RE + R R S RPV IPPETR++ALELM + L+ GEGSV+ R E K C+ N + N+ LGKK+++EKGNGE+GSFFDCNICLDLA+ PVVTCCGHLFCWPCLYRWLH+HSDAKECP+CKGEV +KNLTPIYGRG NS EPE++ +LKIP RPQARR+ESWRQ +RNAFTIPMEEMIRRLG+ FDL+RD+ Q P+NT S R SPER+N LLNR LTSRGMRREQN +P E+ VD L+ +SPTNS+V ES R + RRSH HRAA ISN TSALSS ER VESYF H AE VDDRDSVSSIAA I SESQTVDTAVEIDS VSLSTSSSRRR+DASR+SDVDSG+SRA RRRRLN
Sbjct: 1 MGDEIPNA--MNLDLNLGPSPSPDNELGSGSLSNESVNLEDWIDRQQYNRYREALRLRARQRLR------SFLRPVSIPPETRNIALELMINSSNGGGGAGGGLQTGEGSVSSEGRNDEAIKTCENNVTHEGNDVLGKKEDEEKGNGEEGSFFDCNICLDLARNPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVAIKNLTPIYGRG-NSIHEPEEDPTLKIPSRPQARRIESWRQTIRRNAFTIPMEEMIRRLGSGFDLTRDLVQVQPQNTDSVRDSPERNNSLLNRILTSRGMRREQNTVIPQEDIVDVGLTPTSPTNSDVGESRRFSSLFRRSHAHRAATISNLTSALSSPERFVESYFHYHHAEINHEQPPPVDDRDSVSSIAAAIHSESQTVDTAVEIDSTVSLSTSSSRRRNDASRVSDVDSGESRAYRRRRLN 435
BLAST of XM_017397907.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9T6K7 ((uncharacterized protein LOC105162488 {ECO:0000313|RefSeq:XP_011078819.1}))
HSP 1 Score: 518.079 bits (1333), Expect = 0.000e+0
Identity = 287/434 (66.13%), Postives = 338/434 (77.88%), Query Frame = 0
Match: A0A6I9T6K7 ((uncharacterized protein LOC105162488 {ECO:0000313|RefSeq:XP_011078819.1}))
HSP 1 Score: 518.079 bits (1333), Expect = 0.000e+0
Identity = 287/434 (66.13%), Postives = 338/434 (77.88%), Query Frame = 0
Query: 7 NANTMNLDLNLGPVVN--PDEEIGSGE----SMNLEEWLGRPVNRLRETFMRQRASRPRAGQRWRSVWRPVPIPPETRDLALELMAGAGLEMGEGSVAPAERPSEETKVCDTNNGYLENEALGKKDNDEKGNGEDGSFFDCNICLDLAKEPVVTCCGHLFCWPCLYRWLHLHSDAKECPICKGEVTMKNLTPIYGRGNNSKQEPEDESSLKIPQRPQARRVESWRQAFQRNAFTIPMEEMIRRLGNRFDLSRDVAQGNPRNTGSPRVSPERSNLLLNRFLTSRGMRREQNVGLPSEEAVDLSQSSPTNSEVVES----LRVLRRSHPHRAAVISNFTSALSS-----AERLVESYFRSHPAEN-------VDDRDSVSSIAAVIQSESQTVDTAVEIDSRVSLSTSSSRRRHDASRISDVDSGDSRAPRRRRLN 418
N +TMNLDLNLGPV N D E SG +MNLE+WL PV+R+RE +R R QRWRS+WR +PIPPETR+LALEL+ G + GEGSVA ERP+E K+C+ G++E+E LGKK + K NG++GSFFDCNICLDLAK+PVVTCCGHLFCWPCLY+WLH HSDAKECP+CKGEVT KN+TPIYGRGNN++ +P+ +SSLKIP RPQARR+ESWRQ QR AFTIPMEEMIRRLG+ FDLSR++AQ RN+ PR SPER+ LLNR LTSRGMRRE+ +PS++ +DL++SSP N E ++ +LRRS+ HRAA +SN TSA++S AERLVESYF S+P E VDDRDSVSSIAAVI SESQTVD AVEIDS VSLSTSSSRRR+DASRISDVDSGDSRAPRRRRLN
Sbjct: 5 NTSTMNLDLNLGPVDNSSADSEPASGSYPNVAMNLEDWLDSPVHRVRE-VVRHR------NQRWRSLWRQLPIPPETRNLALELIGGNDPQTGEGSVASEERPNEAAKICENGTGHVEDETLGKKKDGGKNNGDEGSFFDCNICLDLAKDPVVTCCGHLFCWPCLYKWLHHHSDAKECPVCKGEVTTKNVTPIYGRGNNTR-DPDLDSSLKIPLRPQARRIESWRQTIQRTAFTIPMEEMIRRLGSTFDLSRELAQIQSRNSDGPRESPERNTPLLNRILTSRGMRRERTPVVPSDDVIDLTESSPPNYEARDTRRLSSLLLRRSNSHRAATLSNLTSAINSAESLAAERLVESYFHSNPVERNQELPPPVDDRDSVSSIAAVIHSESQTVDNAVEIDSTVSLSTSSSRRRNDASRISDVDSGDSRAPRRRRLN 430
BLAST of XM_017397907.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SN23 ((uncharacterized protein LOC113692879 {ECO:0000313|RefSeq:XP_027067285.1}))
HSP 1 Score: 506.908 bits (1304), Expect = 4.379e-177
Identity = 284/428 (66.36%), Postives = 335/428 (78.27%), Query Frame = 0
Match: A0A6P6SN23 ((uncharacterized protein LOC113692879 {ECO:0000313|RefSeq:XP_027067285.1}))
HSP 1 Score: 506.908 bits (1304), Expect = 4.379e-177
Identity = 284/428 (66.36%), Postives = 335/428 (78.27%), Query Frame = 0
Query: 8 ANTMNLDLNLGPVVNPDE--EIGSG----ESMNLEEWLGR-PVNRLRETFMRQRASRPRAGQRWRSVWRPVPIPPETRDLALELMAGAGLEMGEGSVAPAERPSEETKVCDTNNGYLENEALGKKDNDEKGNGEDGSFFDCNICLDLAKEPVVTCCGHLFCWPCLYRWLHLHSDAKECPICKGEVTMKNLTPIYGRGNNSKQEPEDESSLKIPQRPQARRVESWRQAFQRNAFTIPMEEMIRRLGNRFDLSRDVAQGNPRNTGSPRVSPERSNLLLNRFLTSRGMRREQNVGLPSEEAVDLSQSSPTNSEVVESLRV----LRRSHPHRAAVISNFTSALSSAERLVESYFRSHPAEN-------VDDRDSVSSIAAVIQSESQTVDTAVEIDSRVSLSTSSSRRRHDASRISDVDSGDSRAPRRRRL 417
+ MNLDLNLGP+ + E E SG E+MNLE+WLG P+NR E F RQR +RWRSVWR + +P ETRD+A+EL+ G+GL+ GEGSVA + P + K C+ NN +LE+EALGK D+DEKGN E GSFFDCN+CLDLAK+PVVTCCGHLFCWPCLYRWLH+HSDAKECP+CKGEVTMK +TPIYGRG N++Q ED+S+LKIP RPQARRVES+RQ+ QR AFT+PMEEMIRRL +R+DL Q + N + R SPERS+ LLNR LTSRGMRREQN + ++ VD +QSSPTNSEV E+ R+ LRRSHP++AA IS+ TS LSS ERLVESYFR++P + VDDRDS+SSIAAVIQSESQTVDTAVEIDS VSLSTSSSRRR+DASRISDVDSGDSR RRRRL
Sbjct: 2 GDGMNLDLNLGPIDHSSENTEPRSGSFPDETMNLEDWLGDGPLNRAIEPF-RQR-------RRWRSVWRQLQVPLETRDIAMELIGGSGLQAGEGSVAAEDAPVDVVKTCENNNVFLEDEALGK-DDDEKGNSEAGSFFDCNVCLDLAKDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTMKTVTPIYGRGKNARQ-LEDDSNLKIPLRPQARRVESFRQSLQRTAFTVPMEEMIRRLTSRYDL----YQVHSHNADASRDSPERSHSLLNRILTSRGMRREQNNVISPDDVVDFTQSSPTNSEVGEAGRISSLLLRRSHPNQAA-ISHLTSTLSSTERLVESYFRNNPVDRTQEQTLPVDDRDSISSIAAVIQSESQTVDTAVEIDSTVSLSTSSSRRRNDASRISDVDSGDSRPHRRRRL 414
BLAST of XM_017397907.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FPF8 ((RING/U-box superfamily protein {ECO:0000313|EMBL:GFY99827.1}))
HSP 1 Score: 497.278 bits (1279), Expect = 5.432e-173
Identity = 286/446 (64.13%), Postives = 329/446 (73.77%), Query Frame = 0
Match: A0A7J0FPF8 ((RING/U-box superfamily protein {ECO:0000313|EMBL:GFY99827.1}))
HSP 1 Score: 497.278 bits (1279), Expect = 5.432e-173
Identity = 286/446 (64.13%), Postives = 329/446 (73.77%), Query Frame = 0
Query: 1 MGDEMPNANTMNLDLNLGPVVNPDEEIGSG------ESMNLEEWLGR-PVNRLRETFMRQRASRPRAGQRWRSVWRPVPIPPETRDLALELMAGAG---------LEMGEGSVAPAERPSEETKVCDTNNGYLENEALGKKDNDEKGNGEDGSFFDCNICLDLAKEPVVTCCGHLFCWPCLYRWLHLHSDAKECPICKGEVTMKNLTPIYGRGNNSKQEPEDESSLKIPQRPQARRVESWRQAFQRNAFTIPMEEMIRRLGNRFDLSRDVAQGNPRNTGSPRVSPERSNLLLNRFLTSRGMRREQNVGLPSEEAVD--LSQSSPTNSEVVESLRV---LRRSHPHRAAVISNFTSALSSAERLVESYFRSHPAEN-------VDDRDSVSSIAAVIQSESQTVDTAVEIDSRVSLSTSSSRRRHDASRISDVDSGDSRAPRRRRLN 418
MGDE PNA MNLDLNLGP +PD E+GSG ES+NL +W+ R P NR R+ A R R QR RS +PV IPPETR++ALELM L+ GEG+V+ R E K C+ N + N+ LGK +++EKGNGE GS FDCNICLDLA+ PVVTCCGHLFCWPCLYRWLH+HSDAKECP+CKGEV +KNLTPIYGRG NS EPE++ +LKIP RPQARR+ESWRQ +RNAFTIPMEEMIRRLGN FDL+R++ Q P+NT S + PER+N LNR LT R MRREQN +P E+ VD L+ +S TNS+V ES R RRSH HRAA ISN TSALSSAERLVESYF H AE VDDRDSVSSIAAVI SESQTVDTA+EIDS VSLST SSRRR+DASR+SD+DSG+SRA RRRRLN
Sbjct: 1 MGDETPNA--MNLDLNLGPSPSPDNELGSGSGSLSNESVNLGDWIDRQPYNRHRD------ALRLRPRQRLRSYLQPVSIPPETRNIALELMINFSNGGGTAGGGLQTGEGNVSSEGRNDEAIKTCENNVTHEGNDVLGKMEDEEKGNGEVGSLFDCNICLDLARNPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVAIKNLTPIYGRG-NSIHEPEEDPTLKIPARPQARRIESWRQTIRRNAFTIPMEEMIRRLGNGFDLTRELVQVQPQNTDSVQDPPERNNSFLNRILTLRRMRREQNTVIPQEDIVDVGLTPTSSTNSDVGESHRFSSPFRRSHAHRAATISNLTSALSSAERLVESYFHYHHAERNQEQSPPVDDRDSVSSIAAVIHSESQTVDTAIEIDSTVSLSTLSSRRRNDASRVSDMDSGESRAYRRRRLN 437
BLAST of XM_017397907.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QRQ2 ((E3 ubiquitin-protein like {ECO:0000313|EMBL:PSS13792.1}))
HSP 1 Score: 495.738 bits (1275), Expect = 1.929e-172
Identity = 283/441 (64.17%), Postives = 328/441 (74.38%), Query Frame = 0
Match: A0A2R6QRQ2 ((E3 ubiquitin-protein like {ECO:0000313|EMBL:PSS13792.1}))
HSP 1 Score: 495.738 bits (1275), Expect = 1.929e-172
Identity = 283/441 (64.17%), Postives = 328/441 (74.38%), Query Frame = 0
Query: 1 MGDEMPNANTMNLDLNLGPVVNPDEEIGSG----ESMNLEEWLGR-PVNRLRETFMRQRASRPRAGQRWRSVWRPVPIPPETRDLALELMAGAG------LEMGEGSVAPAERPSEETKVCDTNNGYLENEALGKKDNDEKGNGEDGSFFDCNICLDLAKEPVVTCCGHLFCWPCLYRWLHLHSDAKECPICKGEVTMKNLTPIYGRGNNSKQEPEDESSLKIPQRPQARRVESWRQAFQRNAFTIPMEEMIRRLGNRFDLSRDVAQGNPRNTGSPRVSPERSNLLLNRFLTSRGMRREQNVGLPSEEAVD--LSQSSPTNSEVVESLRV---LRRSHPHRAAVISNFTSALSSAERLVESYFRSHPAEN-------VDDRDSVSSIAAVIQSESQTVDTAVEIDSRVSLSTSSSRRRHDASRISDVDSGDSRAPRRRRLN 418
MGDE PNA MNLDLNLGP +PD E+GSG ES+NL +W+ R P NR RET + R R S +PV IPPETR++ALELM L+ GEG+V+ R E K C+ N + N+ LGK +++EKGNGE+GS FDCNICLDLA+ PVVTCCGHLFCWPCLYRWLH+HSDAKECP+CKG+V +KNLTPIYGRG NS EPE++ +LKIP RPQARR+ESWRQ +RNAFTIPMEEMIRRLG+ FDL+R++ Q P+NT S + PER+N LNR LT RGMRREQN +P E+ VD L+ SS TNS+V ES R RRSH HRAA ISN TSALSSAERLVESYF H AE VDDRDSVSSIAAVI SESQ VDTA+EIDS VSLST SSRRR+DASR+SD+DSG+SRA RRRRLN
Sbjct: 1 MGDETPNA--MNLDLNLGPSPSPDNELGSGSLSNESVNLGDWIDRQPYNRHRETLRLRPRQRLR------SYLQPVSIPPETRNIALELMINFSNGGGGGLQTGEGNVSSEGRNDEAIKTCENNVTHEGNDILGKMEDEEKGNGEEGSLFDCNICLDLARNPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGKVAIKNLTPIYGRG-NSIHEPEEDPTLKIPARPQARRIESWRQTIRRNAFTIPMEEMIRRLGSGFDLTRELVQVQPQNTDSVQDPPERNNSFLNRILTLRGMRREQNTVIPQEDLVDVGLTPSSSTNSDVGESHRFSSPFRRSHAHRAATISNLTSALSSAERLVESYFHYHHAERNQEQSPPVDDRDSVSSIAAVIHSESQMVDTAIEIDSTVSLSTLSSRRRNDASRVSDMDSGESRAYRRRRLN 432
BLAST of XM_017397907.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZIM1 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 493.426 bits (1269), Expect = 8.001e-172
Identity = 272/419 (64.92%), Postives = 319/419 (76.13%), Query Frame = 0
Match: A0A5B6ZIM1 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 493.426 bits (1269), Expect = 8.001e-172
Identity = 272/419 (64.92%), Postives = 319/419 (76.13%), Query Frame = 0
Query: 1 MGDEMPNANTMNLDLNLGPVV--NPDEEIGSG----ESMNLEEWLGRPVNRLRETFMRQRASRPRAGQRWRSVWRPVPIPPETRDLALELMAGAG---LEMGEGSVAPAERPSEETKVCDTNNGYLENEALGKKDNDEKGNGEDGSFFDCNICLDLAKEPVVTCCGHLFCWPCLYRWLHLHSDAKECPICKGEVTMKNLTPIYGRGNNSKQEPEDESSLKIPQRPQARRVESWRQAFQRNAFTIPMEEMIRRLGNRFDLSRDVAQGNPRNTGSPRVSPERSNLLLNRFLTSRGMRREQNVGLPSEEAVDLSQSSPTNSEVVES--LRVLRRSHPHRAAVISNFTSALSSAERLVESYFRSHPAEN-------VDDRDSVSSIAAVIQSESQTVDTAVEIDSRVSLSTSSSRRRHDASRI 401
MGDE PN TMNLDLNLGP+V + E+GSG E++NLE+W+ V+R+RE R QRWRS+WR VPIPPETR++ALELM G L+ GEGSVA ER +E K CD N E+EALGKK++ EKG+G +GSFFDCNICLDLA++PVVTCCGH+FCWPCLYRWLH+HSD KECP+CKGEVT KN+ PIYGRGNN++ E E++SSLKIP RP+A R+ESWRQ QR A +PMEEMIRRLG+RFDL+RD+ Q P+NT S R ERSN LLNR TSRGMRRE+N +P ++ VDL+QSSPTNSEV ES L L R HRAA ISN TSALS+AER+VESYF +HP E VDD DS+SSIAAVI SESQTVDTAVEIDS V LSTSSSRRR+DAS+I
Sbjct: 1 MGDETPN--TMNLDLNLGPLVPHSTYNELGSGSLPNETVNLEDWIDGSVHRIREAVGRN------TRQRWRSLWRQVPIPPETRNIALELMVDGGDGRLQTGEGSVAAEERDNEMMKTCDNNTTLAEDEALGKKEDVEKGSGNEGSFFDCNICLDLARDPVVTCCGHMFCWPCLYRWLHVHSDTKECPVCKGEVTNKNVIPIYGRGNNNR-ELEEDSSLKIPLRPRAWRIESWRQTIQRTA--LPMEEMIRRLGSRFDLTRDLLQVQPQNTHSTRNLAERSNYLLNRIPTSRGMRRERNT-VPPDDVVDLTQSSPTNSEVGESRWLSSLLRRRSHRAATISNLTSALSNAERIVESYFHNHPVETNQEQPPPVDDTDSMSSIAAVIHSESQTVDTAVEIDSTVLLSTSSSRRRNDASKI 407
BLAST of XM_017397907.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4D9ANZ8 ((E3 ubiquitin-protein ligase RNF5 {ECO:0000313|EMBL:TEY58919.1}))
HSP 1 Score: 482.256 bits (1240), Expect = 4.504e-167
Identity = 270/443 (60.95%), Postives = 319/443 (72.01%), Query Frame = 0
Match: A0A4D9ANZ8 ((E3 ubiquitin-protein ligase RNF5 {ECO:0000313|EMBL:TEY58919.1}))
HSP 1 Score: 482.256 bits (1240), Expect = 4.504e-167
Identity = 270/443 (60.95%), Postives = 319/443 (72.01%), Query Frame = 0
Query: 7 NANTMNLDLNLGPVVNPDEEIGSGE---------SMNLEEWLGRPVNRLRETFMRQRASRPRAGQRWRSVWRPVPIPPETRDLALELMAGAGLEMGEGSVAPAERPSEETKVCDTNNGYLENEALGKKDNDEKGNGEDGSFFDCNICLDLAKEPVVTCCGHLFCWPCLYRWLHLHSDAKECPICKGEVTMKNLTPIYGRGNNSKQEPEDESSLKIPQRPQARRVESWRQAFQR--NAFTIPMEEMIRRLGNRFDLSRDVAQGNPRNTGSPRVSPERSNLLLNRFLTSRGMRREQNVGLPSEEAVDLSQSSPTN----------SEVVESLRVLRRSHPHRAAVISNFTSALSSAERL--VESYFRSHPAEN--------VDDRDSVSSIAAVIQSESQTVDTAVEIDSRVSLSTSSSRRRHDASRISDVDSGDSRAPRRRRLN 418
NAN+MNLDLNLGPV N + G GE +MN E+WL PV+R+RE +RQR RWRS WR +PIP ETR+LALEL G+ ++GEGSVA +RP K+C+T G +E+E LGKK K NGE+GSFFDCNICLDLAK+PVVTCCGHLFCW CLYRWLH HSDAKECP+CKGEV+ KN+TPIYGRGN + + D SSLKIP RP ARR+ESWRQ QR AFTIP+EEMIRRLG+ FD++R++AQ + R+ R SPERS LLNRFLTSRGMRRE+ P ++ +DL++ SP N + +LRRS HRAA +SN TSA++SAE L +ESYF+S+ E VDDRDSVSSIAAVI SESQTVD A+EIDS V LST SSRRR+DASRISDVDSGDSRAPRRRRLN
Sbjct: 5 NANSMNLDLNLGPVDNSSD--GGGEPRSGTYMDLAMNFEDWLDSPVHRVREA-VRQR------NHRWRSFWRQLPIPSETRNLALELADGSAPQIGEGSVASEDRPIGVAKICETVAGSVEDEDLGKKKEGAKSNGEEGSFFDCNICLDLAKDPVVTCCGHLFCWSCLYRWLHHHSDAKECPVCKGEVSTKNVTPIYGRGNVVRDQDLD-SSLKIPVRPHARRIESWRQTIQRTATAFTIPVEEMIRRLGSAFDINRELAQIHSRHPDGLRDSPERSTALLNRFLTSRGMRRERTPTPPLDDVIDLTEGSPPNYETRERERERDSRRLTSLLLRRSSSHRAASLSNLTSAVNSAESLAAIESYFQSNAVERSPELPLPVVDDRDSVSSIAAVIHSESQTVDNAIEIDSTVVLSTLSSRRRNDASRISDVDSGDSRAPRRRRLN 437
| Match Name | Stats | Description |
|---|---|---|
| A0A4S4EUM8 | E-Value: 0.000e+0, PID: 66.89 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A7J7GKC0 | E-Value: 0.000e+0, PID: 66.89 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A7J0HCS4 | E-Value: 0.000e+0, PID: 68.02 | (RING/U-box superfamily protein {ECO:0000313|EMBL:... [more] |
| A0A2R6P2P7 | E-Value: 0.000e+0, PID: 65.99 | (E3 ubiquitin-protein like {ECO:0000313|EMBL:PSR84... [more] |
| A0A6I9T6K7 | E-Value: 0.000e+0, PID: 66.13 | (uncharacterized protein LOC105162488 {ECO:0000313... [more] |
| A0A6P6SN23 | E-Value: 4.379e-177, PID: 66.36 | (uncharacterized protein LOC113692879 {ECO:0000313... [more] |
| A0A7J0FPF8 | E-Value: 5.432e-173, PID: 64.13 | (RING/U-box superfamily protein {ECO:0000313|EMBL:... [more] |
| A0A2R6QRQ2 | E-Value: 1.929e-172, PID: 64.17 | (E3 ubiquitin-protein like {ECO:0000313|EMBL:PSS13... [more] |
| A0A5B6ZIM1 | E-Value: 8.001e-172, PID: 64.92 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A4D9ANZ8 | E-Value: 4.504e-167, PID: 60.95 | (E3 ubiquitin-protein ligase RNF5 {ECO:0000313|EMB... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |