Resource Type:
Polypeptide
Name:
XM_017398276.1
Identifier:
XM_017398276.1-protein
Sequence:
MIIKTHSPLSFPVSHREYSFNFTPKPSFLTTPSLSSKRFSISAAMAKEAL
VPIANGTEPIEAAMIIDILRRAEANVTVASVEKQLLVNACHGVNIVADAL
ITDCANTTFDLIALPGGLPGASTLKECATLESIVKKQAAEGRLYAAICAS
PAVAFGSWGVLKGLKATCYPSFMEQLSSTATTVESRVQQDGRAITSRGPG
TTMEFSVALVEQLFGKDKADSVTGPLVMRSNPGDEYTIAELNTVKWISSD
PPKVLVPIANGSEEMEAISIIDVLRRAKAEVIVASVEDTLETVATRKLKI
VADMLIDEASKLSYDLIVLPGGLPGAQKFASSETLVELLKKQKSSGKPYG
AICASPALVLEPHGLLEGKKATAFPSLCEKLSDQSLIDKRIVVDGNVITS
KGPGSALEFSLAIVEKLFGRQKALELGKTMLV
Sequence Length:
432
Sequence Checksum:
49138857e09af8893c480ae088844c22
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017398276.1, derives from mRNA, XM_017398276.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017398276.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017398276.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061FFJ1 ((Class I glutamine amidotransferase-like superfamily protein isoform 1 {ECO:0000313|EMBL:EOY13224.1}))
HSP 1 Score: 637.491 bits (1643), Expect = 0.000e+0
Identity = 306/418 (73.21%), Postives = 356/418 (85.17%), Query Frame = 0
Match: A0A061FFJ1 ((Class I glutamine amidotransferase-like superfamily protein isoform 1 {ECO:0000313|EMBL:EOY13224.1}))
HSP 1 Score: 637.491 bits (1643), Expect = 0.000e+0
Identity = 306/418 (73.21%), Postives = 356/418 (85.17%), Query Frame = 0
Query: 18 YSFNFTPKPSFLTTPSLSSKRFSISA----AMAKEALVPIANGTEPIEAAMIIDILRRAEANVTVASVEKQLLVNACHGVNIVADALITDCANTTFDLIALPGGLPGASTLKECATLESIVKKQAAEGRLYAAICASPAVAFGSWGVLKGLKATCYPSFMEQLSSTATTVESRVQQDGRAITSRGPGTTMEFSVALVEQLFGKDKADSVTGPLVMRSNPGDEYTIAELNTVKWISSDPPKVLVPIANGSEEMEAISIIDVLRRAKAEVIVASVEDTLETVATRKLKIVADMLIDEASKLSYDLIVLPGGLPGAQKFASSETLVELLKKQKSSGKPYGAICASPALVLEPHGLLEGKKATAFPSLCEKLSDQSLIDKRIVVDGNVITSKGPGSALEFSLAIVEKLFGRQKALELGKTML 431
+S FTPK +L RFS SA AMAK+ LVPIANGTEP+EA + ID+LRR+ A+VTVASVEKQL V+ACHGV IVADAL+ DC NT FDLIALPGG+PGA+ LK C LES+VKKQAA+GRLYAA+CASPAVA GSWG+LKGLKATCYPSFMEQL+S AT VESRVQQDG+ +TSRGPGTTMEF+VALVEQL+GK+KA V+GPLVMR N GDEYTI ELN ++W ++ P++LVPIA+GSEEMEA+ IID+LRRAKA V+VASV D LE +A+RK+K+VADML+DEA+KLSYDLIVLPGGL GAQ FA+S+ LV LLKKQ S KPYGAICASPALVLEPHGLL+GKKATAFP++C KLSDQS ID R+VVDGN+ITS+GPG+A+EF+L IVEK FGRQKALEL K ML
Sbjct: 12 HSLPFTPKLRHFHFSALKFPRFSFSASASTAMAKKVLVPIANGTEPMEAVITIDVLRRSGADVTVASVEKQLPVDACHGVKIVADALVVDCTNTIFDLIALPGGMPGATNLKNCGALESVVKKQAADGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLTSCATAVESRVQQDGKVVTSRGPGTTMEFAVALVEQLYGKEKAHEVSGPLVMRPNHGDEYTITELNPMEWKCNNNPQILVPIADGSEEMEAVIIIDILRRAKANVVVASVGDNLEILASRKVKLVADMLLDEAAKLSYDLIVLPGGLGGAQAFANSDKLVNLLKKQMQSNKPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSFIDNRVVVDGNLITSRGPGTAMEFALGIVEKFFGRQKALELAKVML 429
BLAST of XM_017398276.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0B0P8S1 ((Chaperone YajL {ECO:0000313|EMBL:KHG19771.1}))
HSP 1 Score: 627.861 bits (1618), Expect = 0.000e+0
Identity = 304/432 (70.37%), Postives = 359/432 (83.10%), Query Frame = 0
Match: A0A0B0P8S1 ((Chaperone YajL {ECO:0000313|EMBL:KHG19771.1}))
HSP 1 Score: 627.861 bits (1618), Expect = 0.000e+0
Identity = 304/432 (70.37%), Postives = 359/432 (83.10%), Query Frame = 0
Query: 5 THSPLSFPVSHREYSFNFTPKPSFLTTPSLSSKRFSISAA----MAKEALVPIANGTEPIEAAMIIDILRRAEANVTVASVEKQLLVNACHGVNIVADALITDCANTTFDLIALPGGLPGASTLKECATLESIVKKQAAEGRLYAAICASPAVAFGSWGVLKGLKATCYPSFMEQLSSTATTVESRVQQDGRAITSRGPGTTMEFSVALVEQLFGKDKADSVTGPLVMRSNPGDEYTIAELNTVKWISSDPPKVLVPIANGSEEMEAISIIDVLRRAKAEVIVASVEDTLETVATRKLKIVADMLIDEASKLSYDLIVLPGGLPGAQKFASSETLVELLKKQKSSGKPYGAICASPALVLEPHGLLEGKKATAFPSLCEKLSDQSLIDKRIVVDGNVITSKGPGSALEFSLAIVEKLFGRQKALELGKTMLV 432
TH L S + F F+P L S RFS SA+ MAK+ LVPIANGTEP+EA + ID++RR+ A+VTVASVEK+L V+ACHGV IVADAL+ DC NT FDLIALPGG+PGAS K+C LES+VKKQAA+GRLYAA+CASPAVA GSWG+LKGLKATCYPSFMEQL S AT VESRVQQDG+ +TSRGPGTTMEF+V LVEQL+GK+KAD V+GPLVMR N GDEYTI ELN ++W ++ P+VLVPIA+GSEEMEA+ IID+LRRAKA V+VASV D LE +A+RK+K+VADML+DEA+KL+YDLIVLPGGL GAQ FA+S+ LV LLKKQ S KPYGAICASPALVLEPHGLL+GKKATA+P++C+KLSDQS ID R+VVDGN+ITS+GPG+A+EF+L IVEK FGR KALEL K +LV
Sbjct: 10 THQSL-LSTSKLHHHFRFSP---------LKSPRFSCSASASTTMAKQVLVPIANGTEPMEAVITIDVIRRSGADVTVASVEKELRVDACHGVKIVADALVADCKNTVFDLIALPGGMPGASNFKDCGVLESLVKKQAADGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLQSCATAVESRVQQDGKVVTSRGPGTTMEFAVTLVEQLYGKEKADEVSGPLVMRPNHGDEYTITELNPLEWKCNNVPQVLVPIADGSEEMEAVMIIDILRRAKANVVVASVGDNLEILASRKVKLVADMLLDEAAKLTYDLIVLPGGLGGAQAFANSDKLVNLLKKQAESNKPYGAICASPALVLEPHGLLKGKKATAYPAMCDKLSDQSHIDNRVVVDGNLITSRGPGTAMEFALGIVEKFFGRPKALELAKGLLV 431
BLAST of XM_017398276.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4QDT6 ((protein DJ-1 homolog B-like {ECO:0000313|RefSeq:XP_017642290.1}))
HSP 1 Score: 627.861 bits (1618), Expect = 0.000e+0
Identity = 304/432 (70.37%), Postives = 359/432 (83.10%), Query Frame = 0
HSP 2 Score: 452.595 bits (1163), Expect = 3.018e-152
Identity = 228/386 (59.07%), Postives = 291/386 (75.39%), Query Frame = 0
Match: A0A6P4QDT6 ((protein DJ-1 homolog B-like {ECO:0000313|RefSeq:XP_017642290.1}))
HSP 1 Score: 627.861 bits (1618), Expect = 0.000e+0
Identity = 304/432 (70.37%), Postives = 359/432 (83.10%), Query Frame = 0
Query: 5 THSPLSFPVSHREYSFNFTPKPSFLTTPSLSSKRFSISAA----MAKEALVPIANGTEPIEAAMIIDILRRAEANVTVASVEKQLLVNACHGVNIVADALITDCANTTFDLIALPGGLPGASTLKECATLESIVKKQAAEGRLYAAICASPAVAFGSWGVLKGLKATCYPSFMEQLSSTATTVESRVQQDGRAITSRGPGTTMEFSVALVEQLFGKDKADSVTGPLVMRSNPGDEYTIAELNTVKWISSDPPKVLVPIANGSEEMEAISIIDVLRRAKAEVIVASVEDTLETVATRKLKIVADMLIDEASKLSYDLIVLPGGLPGAQKFASSETLVELLKKQKSSGKPYGAICASPALVLEPHGLLEGKKATAFPSLCEKLSDQSLIDKRIVVDGNVITSKGPGSALEFSLAIVEKLFGRQKALELGKTMLV 432
TH L S + F F+P L S RFS SA+ MAK+ LVPIANGTEP+EA + ID++RR+ A+VTVASVEK+L V+ACHGV IVADAL+ DC NT FDLIALPGG+PGAS K+C LES+VKKQAA+GRLYAA+CASPAVA GSWG+LKGLKATCYPSFMEQL S AT VESRVQQDG+ +TSRGPGTTMEF+V LVEQL+GK+KAD V+GPLVMR N GDEYTI ELN ++W ++ P+VLVPIA+GSEEMEA+ IID+LRRAKA V+VASV D LE +A+RK+K+VADML+DEA+KL+YDLIVLPGGL GAQ FA+S+ LV LLKKQ S KPYGAICASPALVLEPHGLL+GKKATA+P++C+KLSDQS ID R+VVDGN+ITS+GPG+A+EF+L IVEK FGR KALEL K +LV
Sbjct: 10 THQSL-LSTSKLHHHFRFSP---------LKSPRFSCSASASTTMAKQVLVPIANGTEPMEAVITIDVIRRSGADVTVASVEKELRVDACHGVKIVADALVADCKNTVFDLIALPGGMPGASNFKDCGVLESLVKKQAADGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLQSCATAVESRVQQDGKVVTSRGPGTTMEFAVTLVEQLYGKEKADEVSGPLVMRPNHGDEYTITELNPLEWKCNNVPQVLVPIADGSEEMEAVMIIDILRRAKANVVVASVGDNLEILASRKVKLVADMLLDEAAKLTYDLIVLPGGLGGAQAFANSDKLVNLLKKQAESNKPYGAICASPALVLEPHGLLKGKKATAYPAMCDKLSDQSHIDNRVVVDGNLITSRGPGTAMEFALGIVEKFFGRPKALELAKGLLV 431
HSP 2 Score: 452.595 bits (1163), Expect = 3.018e-152
Identity = 228/386 (59.07%), Postives = 291/386 (75.39%), Query Frame = 0
Query: 48 EALVPIANGTEPIEAAMIIDILRRAEANVTVASVEKQLLVNACHGVNIVADALITDCANTTFDLIALPGGLPGASTLKECATLESIVKKQAAEGRLYAAICASPAVAFGSWGVLKGLKATCYPSFMEQLSSTATTVESRVQQDGRAITSRGPGTTMEFSVALVEQLFGKDKA-DSVTGPLVMRSNPGDEYTIAELNTVKWISSDPPKVLVPIANGSEEMEAISIIDVLRRAKAEVIVASVEDTLETVATRKLKIVADMLIDEASKLSYDLIVLPGGLPGAQKFASSETLVELLKKQKSSGKPYGAICASPALVLEPHGLLEGKKATAFPSLCEKLSDQSLIDKRIVVDGNVITSKGPGSALEFSLAIVEKLFGRQKALELGKTMLV 432
+ LVPIA+G+E +EA MIIDILRRA+ANV VASV L + A V +VAD L+ + A T+DLI LPGGL GA L +++KKQA + Y AICASPA+ G+LKG KAT YP+ ++LS + +++RV DG ITSRGPGT MEF++ +VE+ FG+ KA + G LVM N GD+YTI ELN ++W ++ +VLVPIA GSEEMEA+ IID+LRR KA V+VAS D LE +A+ ++K+V DML+DEA+KL+YDL+VLPGGL GAQ FA S+ LV LLKKQ S +PYGAIC SPALVLEPHGL++GKKATA+P++C+KLSDQS ID R+VVDGN+ITS+GPG+++EF+L IVEK FGR KALEL K +LV
Sbjct: 252 QVLVPIADGSEEMEAVMIIDILRRAKANVVVASVGDNLEILASRKVKLVADMLLDEAAKLTYDLIVLPGGLGGAQAFANSDKLVNLLKKQAESNKPYGAICASPALVLEPHGLLKGKKATAYPAMCDKLSDQ-SHIDNRVVVDGNLITSRGPGTAMEFALGIVEKFFGRPKALELAKGLLVMCPNHGDDYTITELNPMEWKCNNVLQVLVPIAGGSEEMEAVMIIDILRRTKANVVVASDGDNLEILASSEVKLVTDMLLDEAAKLTYDLVVLPGGLGGAQAFAKSDKLVNLLKKQAESNQPYGAICTSPALVLEPHGLIKGKKATAYPAMCDKLSDQSHIDNRVVVDGNLITSRGPGTSIEFALGIVEKFFGRPKALELAKGLLV 636
BLAST of XM_017398276.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2HIB8 ((Uncharacterized protein {ECO:0000313|EMBL:TYH30025.1}))
HSP 1 Score: 627.476 bits (1617), Expect = 0.000e+0
Identity = 304/432 (70.37%), Postives = 358/432 (82.87%), Query Frame = 0
Match: A0A5D2HIB8 ((Uncharacterized protein {ECO:0000313|EMBL:TYH30025.1}))
HSP 1 Score: 627.476 bits (1617), Expect = 0.000e+0
Identity = 304/432 (70.37%), Postives = 358/432 (82.87%), Query Frame = 0
Query: 5 THSPLSFPVSHREYSFNFTPKPSFLTTPSLSSKRFSISAA----MAKEALVPIANGTEPIEAAMIIDILRRAEANVTVASVEKQLLVNACHGVNIVADALITDCANTTFDLIALPGGLPGASTLKECATLESIVKKQAAEGRLYAAICASPAVAFGSWGVLKGLKATCYPSFMEQLSSTATTVESRVQQDGRAITSRGPGTTMEFSVALVEQLFGKDKADSVTGPLVMRSNPGDEYTIAELNTVKWISSDPPKVLVPIANGSEEMEAISIIDVLRRAKAEVIVASVEDTLETVATRKLKIVADMLIDEASKLSYDLIVLPGGLPGAQKFASSETLVELLKKQKSSGKPYGAICASPALVLEPHGLLEGKKATAFPSLCEKLSDQSLIDKRIVVDGNVITSKGPGSALEFSLAIVEKLFGRQKALELGKTMLV 432
TH L S + F F+P L S RFS SA+ MAK+ LVPIANGTEP+EA + ID++RR+ A+VTVASVEK+L V+ACHGV IVADAL+ DC NT FDLIALPGG+PGAS K+C LES+VKKQAA+GRLYAA+CASPAVA GSWG+LKGLKATCYPSFMEQL S AT VESRVQQDG+ +TSRGPGTTMEF+V LVEQL+GK+KAD V+GPLVMR N GDEYTI ELN ++W ++ P+VLVPIA+GSEEMEA+ IID+LRRAKA V+VASV D LE +A+RK+K+VADML+DEA+KL+YDLIVLPGGL GAQ FA S+ LV LLKKQ S KPYGAICASPALVLEPHGLL+GKKATA+P++C+KLSDQS ID R+VVDGN+ITS+GPG+A+EF+L IVEK FGR KALEL K +LV
Sbjct: 10 THQSL-LSTSKLHHHFRFSP---------LKSPRFSCSASASTTMAKQVLVPIANGTEPMEAVITIDVIRRSGADVTVASVEKELRVDACHGVKIVADALVADCKNTVFDLIALPGGMPGASNFKDCGVLESLVKKQAADGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLQSCATAVESRVQQDGKVVTSRGPGTTMEFAVTLVEQLYGKEKADEVSGPLVMRPNHGDEYTITELNPLEWKCNNVPQVLVPIADGSEEMEAVMIIDILRRAKANVVVASVGDNLEILASRKVKLVADMLLDEAAKLTYDLIVLPGGLGGAQAFAKSDKLVNLLKKQAESNKPYGAICASPALVLEPHGLLKGKKATAYPAMCDKLSDQSHIDNRVVVDGNLITSRGPGTAMEFALGIVEKFFGRPKALELAKGLLV 431
BLAST of XM_017398276.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5WVB6 ((Uncharacterized protein {ECO:0000313|EMBL:KAB2095682.1}))
HSP 1 Score: 627.476 bits (1617), Expect = 0.000e+0
Identity = 304/432 (70.37%), Postives = 358/432 (82.87%), Query Frame = 0
Match: A0A5J5WVB6 ((Uncharacterized protein {ECO:0000313|EMBL:KAB2095682.1}))
HSP 1 Score: 627.476 bits (1617), Expect = 0.000e+0
Identity = 304/432 (70.37%), Postives = 358/432 (82.87%), Query Frame = 0
Query: 5 THSPLSFPVSHREYSFNFTPKPSFLTTPSLSSKRFSISAA----MAKEALVPIANGTEPIEAAMIIDILRRAEANVTVASVEKQLLVNACHGVNIVADALITDCANTTFDLIALPGGLPGASTLKECATLESIVKKQAAEGRLYAAICASPAVAFGSWGVLKGLKATCYPSFMEQLSSTATTVESRVQQDGRAITSRGPGTTMEFSVALVEQLFGKDKADSVTGPLVMRSNPGDEYTIAELNTVKWISSDPPKVLVPIANGSEEMEAISIIDVLRRAKAEVIVASVEDTLETVATRKLKIVADMLIDEASKLSYDLIVLPGGLPGAQKFASSETLVELLKKQKSSGKPYGAICASPALVLEPHGLLEGKKATAFPSLCEKLSDQSLIDKRIVVDGNVITSKGPGSALEFSLAIVEKLFGRQKALELGKTMLV 432
TH L S + F F+P L S RFS SA+ MAK+ LVPIANGTEP+EA + ID++RR+ A+VTVASVEK+L V+ACHGV IVADAL+ DC NT FDLIALPGG+PGAS K+C LES+VKKQAA+GRLYAA+CASPAVA GSWG+LKGLKATCYPSFMEQL S AT VESRVQQDG+ +TSRGPGTTMEF+V LVEQL+GK+KAD V+GPLVMR N GDEYTI ELN ++W ++ P+VLVPIA+GSEEMEA+ IID+LRRAKA V+VASV D LE +A+RK+K+VADML+DEA+KL+YDLIVLPGGL GAQ FA S+ LV LLKKQ S KPYGAICASPALVLEPHGLL+GKKATA+P++C+KLSDQS ID R+VVDGN+ITS+GPG+A+EF+L IVEK FGR KALEL K +LV
Sbjct: 10 THQSL-LSTSKLHHHFRFSP---------LKSPRFSCSASASTTMAKQVLVPIANGTEPMEAVITIDVIRRSGADVTVASVEKELRVDACHGVKIVADALVADCKNTVFDLIALPGGMPGASNFKDCGVLESLVKKQAADGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLQSCATAVESRVQQDGKVVTSRGPGTTMEFAVTLVEQLYGKEKADEVSGPLVMRPNHGDEYTITELNPLEWKCNNVPQVLVPIADGSEEMEAVMIIDILRRAKANVVVASVGDNLEILASRKVKLVADMLLDEAAKLTYDLIVLPGGLGGAQAFAKSDKLVNLLKKQAESNKPYGAICASPALVLEPHGLLKGKKATAYPAMCDKLSDQSHIDNRVVVDGNLITSRGPGTAMEFALGIVEKFFGRPKALELAKGLLV 431
BLAST of XM_017398276.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8KJ74 ((protein DJ-1 homolog B-like {ECO:0000313|RefSeq:XP_016702510.1}))
HSP 1 Score: 627.091 bits (1616), Expect = 0.000e+0
Identity = 304/432 (70.37%), Postives = 358/432 (82.87%), Query Frame = 0
Match: A0A1U8KJ74 ((protein DJ-1 homolog B-like {ECO:0000313|RefSeq:XP_016702510.1}))
HSP 1 Score: 627.091 bits (1616), Expect = 0.000e+0
Identity = 304/432 (70.37%), Postives = 358/432 (82.87%), Query Frame = 0
Query: 5 THSPLSFPVSHREYSFNFTPKPSFLTTPSLSSKRFSISAA----MAKEALVPIANGTEPIEAAMIIDILRRAEANVTVASVEKQLLVNACHGVNIVADALITDCANTTFDLIALPGGLPGASTLKECATLESIVKKQAAEGRLYAAICASPAVAFGSWGVLKGLKATCYPSFMEQLSSTATTVESRVQQDGRAITSRGPGTTMEFSVALVEQLFGKDKADSVTGPLVMRSNPGDEYTIAELNTVKWISSDPPKVLVPIANGSEEMEAISIIDVLRRAKAEVIVASVEDTLETVATRKLKIVADMLIDEASKLSYDLIVLPGGLPGAQKFASSETLVELLKKQKSSGKPYGAICASPALVLEPHGLLEGKKATAFPSLCEKLSDQSLIDKRIVVDGNVITSKGPGSALEFSLAIVEKLFGRQKALELGKTMLV 432
TH L S + F F+P L S RFS SA+ MAK+ LVPIANGTEP+EA + ID++RR+ A+VTVASVEK+L V+ACHGV IVADAL+ DC NT FDLIALPGG+PGAS K+C LES+VKKQAA+GRLYAA+CASPAVA GSWG+LKGLKATCYPSFMEQL S AT VESRVQQDG+ +TSRGPGTTMEF+V LVEQL+GK+KAD V+GPLVMR N GDEYTI ELN ++W ++ P+VLVPIA+GSEEMEA+ IID+LRRAKA V+VASV D LE +A+RK+K+VADML+DEA+KL+YDLIVLPGGL GAQ FA S+ LV LLKKQ S KPYGAICASPALVLEPHGLL+GKKATA+P++C+KLSDQS ID R+VVDGN+ITS+GPG+A+EF+L IVEK FGR KALEL K +LV
Sbjct: 10 THQSL-LSTSKLHHHFRFSP---------LKSPRFSCSASASTTMAKQVLVPIANGTEPMEAVITIDVIRRSGADVTVASVEKELRVDACHGVKIVADALVADCKNTVFDLIALPGGMPGASNFKDCGVLESLVKKQAADGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLQSCATAVESRVQQDGKVVTSRGPGTTMEFAVTLVEQLYGKEKADEVSGPLVMRPNHGDEYTITELNPLEWKCNNVPQVLVPIADGSEEMEAVMIIDILRRAKANVVVASVGDNLEILASRKVKLVADMLLDEAAKLTYDLIVLPGGLGGAQAFAKSDKLVNLLKKQAESNKPYGAICASPALVLEPHGLLKGKKATAYPAMCDKLSDQSHIDNRVVVDGNLITSRGPGTAMEFALGIVEKFFGRPKALELAKGLLV 431
BLAST of XM_017398276.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2M5M8 ((Uncharacterized protein {ECO:0000313|EMBL:TYH86655.1}))
HSP 1 Score: 625.165 bits (1611), Expect = 0.000e+0
Identity = 303/431 (70.30%), Postives = 358/431 (83.06%), Query Frame = 0
Match: A0A5D2M5M8 ((Uncharacterized protein {ECO:0000313|EMBL:TYH86655.1}))
HSP 1 Score: 625.165 bits (1611), Expect = 0.000e+0
Identity = 303/431 (70.30%), Postives = 358/431 (83.06%), Query Frame = 0
Query: 6 HSPLSFPVSHREYSFNFTPKPSFLTTPSLSSKRFSISAA----MAKEALVPIANGTEPIEAAMIIDILRRAEANVTVASVEKQLLVNACHGVNIVADALITDCANTTFDLIALPGGLPGASTLKECATLESIVKKQAAEGRLYAAICASPAVAFGSWGVLKGLKATCYPSFMEQLSSTATTVESRVQQDGRAITSRGPGTTMEFSVALVEQLFGKDKADSVTGPLVMRSNPGDEYTIAELNTVKWISSDPPKVLVPIANGSEEMEAISIIDVLRRAKAEVIVASVEDTLETVATRKLKIVADMLIDEASKLSYDLIVLPGGLPGAQKFASSETLVELLKKQKSSGKPYGAICASPALVLEPHGLLEGKKATAFPSLCEKLSDQSLIDKRIVVDGNVITSKGPGSALEFSLAIVEKLFGRQKALELGKTMLV 432
HS LS S + F F+P L S RFS SA+ MAK+ LVPIANGTEP+EA + ID++RR A+VTVASVEK+L V+ACHGV IVADAL+ DC NT FDLIALPGG+PGAS K+C LES+VKKQAA+GRLYAA+CASPAVA GSWG+LKGLKATCYPSFMEQL S AT VESRVQQDG+ +TSRGPGTTMEF+V LVEQL+GK+KAD V+GPLVMR N GDEYTI ELN ++W ++ P+VLVPIA+GSEEMEA+ IID+LRRAKA V+VASV D LE +A+RK+K+VADML+DEA+KL+YDL+VLPGGL GAQ FA S+ LV LLKKQ S KPYGAICASPALVLEPHGLL+GKKATA+P++C+KLSDQS ID R+VVDGN+ITS+GPG+++EF+L IVEK FGR KALEL K +LV
Sbjct: 12 HSLLS--TSKLHHHFRFSP---------LKSPRFSCSASASSTMAKQVLVPIANGTEPMEAVITIDVIRRLGADVTVASVEKELRVDACHGVKIVADALVADCKNTVFDLIALPGGMPGASNFKDCGALESLVKKQAADGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLQSCATAVESRVQQDGKVVTSRGPGTTMEFAVTLVEQLYGKEKADEVSGPLVMRPNHGDEYTITELNPLEWKCNNVPQVLVPIADGSEEMEAVMIIDILRRAKANVVVASVGDNLEILASRKVKLVADMLLDEAAKLTYDLVVLPGGLGGAQAFAKSDKLVNLLKKQAESNKPYGAICASPALVLEPHGLLKGKKATAYPAMCDKLSDQSHIDNRVVVDGNLITSRGPGTSMEFALGIVEKFFGRPKALELAKGLLV 431
BLAST of XM_017398276.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0D2Q8F7 ((Uncharacterized protein {ECO:0000313|EMBL:KJB13186.1}))
HSP 1 Score: 624.394 bits (1609), Expect = 0.000e+0
Identity = 302/431 (70.07%), Postives = 359/431 (83.29%), Query Frame = 0
Match: A0A0D2Q8F7 ((Uncharacterized protein {ECO:0000313|EMBL:KJB13186.1}))
HSP 1 Score: 624.394 bits (1609), Expect = 0.000e+0
Identity = 302/431 (70.07%), Postives = 359/431 (83.29%), Query Frame = 0
Query: 6 HSPLSFPVSHREYSFNFTPKPSFLTTPSLSSKRFSISAA----MAKEALVPIANGTEPIEAAMIIDILRRAEANVTVASVEKQLLVNACHGVNIVADALITDCANTTFDLIALPGGLPGASTLKECATLESIVKKQAAEGRLYAAICASPAVAFGSWGVLKGLKATCYPSFMEQLSSTATTVESRVQQDGRAITSRGPGTTMEFSVALVEQLFGKDKADSVTGPLVMRSNPGDEYTIAELNTVKWISSDPPKVLVPIANGSEEMEAISIIDVLRRAKAEVIVASVEDTLETVATRKLKIVADMLIDEASKLSYDLIVLPGGLPGAQKFASSETLVELLKKQKSSGKPYGAICASPALVLEPHGLLEGKKATAFPSLCEKLSDQSLIDKRIVVDGNVITSKGPGSALEFSLAIVEKLFGRQKALELGKTMLV 432
HS LS S + F F+P L S RFS SA+ MAK+ LVPIANGTEP+EA + ID++RR+ A+VTVASVEK+L V+ACHGV IVADAL+ DC NT FDLIALPGG+PGAS K+C LES+VKKQAA+GRLYAA+CASPAVA GSWG+LKGLKATCYPSFMEQL S AT VESRVQQDG+ +TSRGPG+TMEF+V LVEQL+GK+KAD V+GPLVMR N GDEYTI ELN ++W ++ P+VLVPIA+GSEEMEA+ IID+LRRAKA V+VASV D LE +A+RK+K+VADML+DEA+KL+YDL+VLPGGL GAQ FA S+ LV LLKKQ S KPYGAICASPALVLEPHGLL+GKKATA+P++C+KLSDQS ID R+VVDGN+ITS+GPG+++EF+L IVEK FGR KALEL K +LV
Sbjct: 12 HSLLS--TSKLHHHFRFSP---------LKSPRFSCSASASSTMAKQVLVPIANGTEPMEAVITIDVIRRSGADVTVASVEKELRVDACHGVKIVADALVADCKNTVFDLIALPGGMPGASNFKDCGALESLVKKQAADGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLQSCATAVESRVQQDGKVVTSRGPGSTMEFAVTLVEQLYGKEKADEVSGPLVMRPNHGDEYTITELNPLEWKCNNVPQVLVPIADGSEEMEAVMIIDILRRAKANVVVASVGDNLEILASRKVKLVADMLLDEAAKLTYDLVVLPGGLGGAQAFAKSDKLVNLLKKQAESNKPYGAICASPALVLEPHGLLKGKKATAYPAMCDKLSDQSHIDNRVVVDGNLITSRGPGTSMEFALGIVEKFFGRPKALELAKGLLV 431
BLAST of XM_017398276.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D3AFT7 ((Uncharacterized protein {ECO:0000313|EMBL:TYJ48376.1}))
HSP 1 Score: 623.624 bits (1607), Expect = 0.000e+0
Identity = 302/432 (69.91%), Postives = 357/432 (82.64%), Query Frame = 0
Match: A0A5D3AFT7 ((Uncharacterized protein {ECO:0000313|EMBL:TYJ48376.1}))
HSP 1 Score: 623.624 bits (1607), Expect = 0.000e+0
Identity = 302/432 (69.91%), Postives = 357/432 (82.64%), Query Frame = 0
Query: 5 THSPLSFPVSHREYSFNFTPKPSFLTTPSLSSKRFSISAA----MAKEALVPIANGTEPIEAAMIIDILRRAEANVTVASVEKQLLVNACHGVNIVADALITDCANTTFDLIALPGGLPGASTLKECATLESIVKKQAAEGRLYAAICASPAVAFGSWGVLKGLKATCYPSFMEQLSSTATTVESRVQQDGRAITSRGPGTTMEFSVALVEQLFGKDKADSVTGPLVMRSNPGDEYTIAELNTVKWISSDPPKVLVPIANGSEEMEAISIIDVLRRAKAEVIVASVEDTLETVATRKLKIVADMLIDEASKLSYDLIVLPGGLPGAQKFASSETLVELLKKQKSSGKPYGAICASPALVLEPHGLLEGKKATAFPSLCEKLSDQSLIDKRIVVDGNVITSKGPGSALEFSLAIVEKLFGRQKALELGKTMLV 432
TH L S + F F+P L S RFS SA+ MAK+ LVPIANGTEP+EA + ID++RR+ A+VTVASVEK+L V+ACHGV IVADAL+ DC NT FDLIALPGG+PGAS K+C LES+VKKQAA+GRLYAA+CASPAVA GSWG+LKGLKATCYPSFMEQL S AT VESRVQQDG+ +TSRGPG TMEF+V LVEQL+GK+KAD V+GPLVMR N GDEYTI ELN ++W ++ P+VLVPIA+GSEEMEA+ IID+LRRAKA V+VASV D LE +A+RK+K+VADML+DEA+KL+YDLIVLPGGL GAQ FA S+ LV LLKKQ S KPYGAICASPALVLEPHGLL+GKKATA+P++C+KLSDQS ID R+VVDGN+ITS+GPG+++EF+L IVEK FGR KALEL K +LV
Sbjct: 10 THQSL-LSTSKLHHHFRFSP---------LKSPRFSCSASASTTMAKQVLVPIANGTEPMEAVITIDVIRRSGADVTVASVEKELRVDACHGVKIVADALVADCKNTVFDLIALPGGMPGASNFKDCGVLESLVKKQAADGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLQSCATAVESRVQQDGKVVTSRGPGYTMEFAVTLVEQLYGKEKADEVSGPLVMRPNDGDEYTITELNPLEWKCNNVPQVLVPIADGSEEMEAVMIIDILRRAKANVVVASVGDNLEILASRKVKLVADMLLDEAAKLTYDLIVLPGGLGGAQAFAKSDKLVNLLKKQAESNKPYGAICASPALVLEPHGLLKGKKATAYPAMCDKLSDQSHIDNRVVVDGNLITSRGPGTSMEFALGIVEKFFGRPKALELAKGLLV 431
BLAST of XM_017398276.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2DM57 ((Uncharacterized protein {ECO:0000313|EMBL:TYG82127.1}))
HSP 1 Score: 623.239 bits (1606), Expect = 0.000e+0
Identity = 301/431 (69.84%), Postives = 358/431 (83.06%), Query Frame = 0
Match: A0A5D2DM57 ((Uncharacterized protein {ECO:0000313|EMBL:TYG82127.1}))
HSP 1 Score: 623.239 bits (1606), Expect = 0.000e+0
Identity = 301/431 (69.84%), Postives = 358/431 (83.06%), Query Frame = 0
Query: 6 HSPLSFPVSHREYSFNFTPKPSFLTTPSLSSKRFSISAA----MAKEALVPIANGTEPIEAAMIIDILRRAEANVTVASVEKQLLVNACHGVNIVADALITDCANTTFDLIALPGGLPGASTLKECATLESIVKKQAAEGRLYAAICASPAVAFGSWGVLKGLKATCYPSFMEQLSSTATTVESRVQQDGRAITSRGPGTTMEFSVALVEQLFGKDKADSVTGPLVMRSNPGDEYTIAELNTVKWISSDPPKVLVPIANGSEEMEAISIIDVLRRAKAEVIVASVEDTLETVATRKLKIVADMLIDEASKLSYDLIVLPGGLPGAQKFASSETLVELLKKQKSSGKPYGAICASPALVLEPHGLLEGKKATAFPSLCEKLSDQSLIDKRIVVDGNVITSKGPGSALEFSLAIVEKLFGRQKALELGKTMLV 432
HS LS S + F F+P L S RFS SA+ MAK+ LVPIANGTEP+EA + ID++RR+ A+VTVASVEK+L V+ACHGV IVADAL+ DC NT FDLIALPGG+PGAS K+C LE++VKKQAA+GRLYAA+CASPAVA GSWG+LKGLKATCYPSFMEQL S AT VESRVQQDG+ +TSRGPGTTMEF+V LVEQL+GK+KAD V+GPLVMR N GDEYTI ELN ++W ++ P+VLVPIA+GSEEME + IID+LRRAKA V+VASV D LE +A+RK+K+VADML+DEA+KL+YDL+VLPGGL GAQ FA S+ LV LLKKQ S KPYGAICASPALVLEPHGLL+GKKATA+P++C+KLSDQS ID R+VVDGN+ITS+GPG+++EF+L IVEK FGR KALEL K +LV
Sbjct: 12 HSLLS--TSKLHHHFRFSP---------LKSPRFSCSASASSTMAKQVLVPIANGTEPMEAVITIDVIRRSGADVTVASVEKELRVDACHGVKIVADALVADCKNTVFDLIALPGGMPGASNFKDCGALENLVKKQAADGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLQSCATAVESRVQQDGKVVTSRGPGTTMEFAVTLVEQLYGKEKADEVSGPLVMRPNHGDEYTITELNPLEWKCNNVPQVLVPIADGSEEMEVVMIIDILRRAKANVVVASVGDNLEILASRKVKLVADMLLDEAAKLTYDLVVLPGGLGGAQAFAKSDKLVNLLKKQAESNKPYGAICASPALVLEPHGLLKGKKATAYPAMCDKLSDQSHIDNRVVVDGNLITSRGPGTSMEFALGIVEKFFGRPKALELAKGLLV 431
| Match Name | Stats | Description |
|---|---|---|
| A0A061FFJ1 | E-Value: 0.000e+0, PID: 73.21 | (Class I glutamine amidotransferase-like superfami... [more] |
| A0A0B0P8S1 | E-Value: 0.000e+0, PID: 70.37 | (Chaperone YajL {ECO:0000313|EMBL:KHG19771.1})[more] |
| A0A6P4QDT6 | E-Value: 3.018e-152, PID: 70.37 | (protein DJ-1 homolog B-like {ECO:0000313|RefSeq:X... [more] |
| A0A5D2HIB8 | E-Value: 0.000e+0, PID: 70.37 | (Uncharacterized protein {ECO:0000313|EMBL:TYH3002... [more] |
| A0A5J5WVB6 | E-Value: 0.000e+0, PID: 70.37 | (Uncharacterized protein {ECO:0000313|EMBL:KAB2095... [more] |
| A0A1U8KJ74 | E-Value: 0.000e+0, PID: 70.37 | (protein DJ-1 homolog B-like {ECO:0000313|RefSeq:X... [more] |
| A0A5D2M5M8 | E-Value: 0.000e+0, PID: 70.30 | (Uncharacterized protein {ECO:0000313|EMBL:TYH8665... [more] |
| A0A0D2Q8F7 | E-Value: 0.000e+0, PID: 70.07 | (Uncharacterized protein {ECO:0000313|EMBL:KJB1318... [more] |
| A0A5D3AFT7 | E-Value: 0.000e+0, PID: 69.91 | (Uncharacterized protein {ECO:0000313|EMBL:TYJ4837... [more] |
| A0A5D2DM57 | E-Value: 0.000e+0, PID: 69.84 | (Uncharacterized protein {ECO:0000313|EMBL:TYG8212... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |