XM_017397782.1

Resource Type: 
Polypeptide
Name: 
XM_017397782.1
Identifier: 
XM_017397782.1-protein
Sequence: 
MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAA
EEERLREEFEKAGRKLPPKQESQVCDSNVITPGTEFMAVLSVALQYYIHL
RINNDPGWKSVKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLY
GLDADLIMLALATHEIHFSILREVVFTPGQQNKCFLCGQMGHMAAECEGK
AKRKNGEFDEKCEIVPKKPYQFLHIWTLREYLELEMRIPNIPFTIDFERI
VDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRALGGYLTDG
SKPNLSRVEHFIQAVGSYEDKIFSKRARLHQRQAERVKRDKAQLKRGDDA
EPQIKPDMVPVARFHGSRLASGHAPSPYQHTQSANQRAPKVARLSSEATI
GAALVEAENNLENEASDNKEELKTKLKGILREKSDAFNSENPEEDKVKLG
EPGWKERYYEEKFSAKTPEELDRVRRDVVLSYAEGLCWVMHYYYEGVCSW
QWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALP
QQYRKLMTDPNSPIIDFYPADFEVDMNGKRFAWQGIAKLPFIDEARLLAE
VAKIEYTLTDEEVRRNSTMYDMLFVALSHPLSPYIFSLDDRCKQLDDKER
TQIKEQIDPGASGGMNGYISLCAGDPCPTIFRSPVEGMEDIMDNQVICAI
YILPDAHNHIAHPPPGVKLPKKTVSFGDLTPEPVLWHEDSGRKPWENKRN
NPPGAISGRQLGDAAHRLVANSLQIKKDRNVDGDHYGHPPYVTTHGPAFH
PNQTLRHHGQEQYRMVPPAYPEGRHMLPNSVPGHSQYDRSYNQPYASSST
RHPNNWHRPPLDQSRDYPPQVYHSQGSHQNRHVYQPRGPLHAVQAPPPIA
AGVPFYQQVGYQAYGGANYHHQNGGPPTVNPRVGRDYGRHQQFGNQFSAL
DISRGVRRPPPPPGYRR
Sequence Length: 
967
Sequence Checksum: 
442f7d0f7fc6c0c20ebe27bba528dd62
View location in JBrowse: 
DCARv2_Chr5:19732118..19742702-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017397782.1, derives from mRNA, XM_017397782.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017397782.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017397782.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B2R2 (5'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR037239} (3.1.13.- {ECO:0000256|PIRNR:PIRNR037239}))

HSP 1 Score: 1449.88 bits (3752), Expect = 0.000e+0
Identity = 756/992 (76.21%), Postives = 810/992 (81.65%), Query Frame = 0
 
Query:    1 MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEKAGRKLPPKQESQVCDSNVITPGTEFMAVLSVALQYYIHLRINNDPGWKSVKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHEIHFSILREVVFTPGQQNKCFLCGQMGHMAAECEGKAKRKNGEFDEKCE-IVPKKPYQFLHIWTLREYLELEMRIPNIPFTIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRALGGYLTDGSKPNLSRVEHFIQAVGSYEDKIFSKRARLHQRQAERVKRDKAQLKRGDDAEPQIKPD-MVPVARFHGSRLASGHAPSPYQHT-------QSANQ-------RAPKVARLSSEATIGAALVEAENNLENEASD--NKEELKTKLKGILREKSDAFNSENPEEDKVKLGEPGWKERYYEEKFSAKTPEELDRVRRDVVLSYAEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALPQQYRKLMTDPNSPIIDFYPADFEVDMNGKRFAWQGIAKLPFIDEARLLAEVAKIEYTLTDEEVRRNSTMYDMLFVALSHPLSPYIFSLDDRCKQLDDKERTQIKEQIDPGASGGMNGYISLCAGDPCPTIFRSPVEGMEDIMDNQVICAIYILPDAHNHIAHPPPGVKLPKKTVSFGDLTPEPVLWHEDSGRKPWENKRNNPPGAISGRQLGDAAHRLVANSLQIKKDRNVDGDHYGHP--PYVTTHGPAFHPNQTLRHHGQEQYRMVPP--AYPE----GRHMLPNSVPGHSQYDRSYNQPYASSSTRHP-NNWH------RPPLDQSRDYPPQVYHSQGSHQNRHVYQPRGPLHAVQAPPPIAAGVPFYQQVGYQAY------GGANYHHQNGG--PPTVNPRVGRDYGRHQQFGNQFSALD 951
            MFDYIDRL+VMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLR+EFE+ GRKLPPKQESQVCDSNVITPGTEFM VLS+ALQYYIHLR+NNDPGWKS+KVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLA+ATHE+HFSILREVVFTPGQQNKCFLCGQMGH+AAECEGKAKRK+GEFDEK E  V KKPYQFL+IWTLREYLE EMRIPN+PF IDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLL+AVYKKEFRALGGYLTD SKPNLS VEHFIQAVGSYEDKIF KRARLHQRQA R+KR+KAQ KRGDD EP++KP+ MVPVARFHGSRLASG +PSPYQ T       QS          R  KVA  SS ATIGAA+VEAEN+LE E+ +  NKEELK KLK +LREKSD FNS NPEEDKVKLGEPGWKERYYEEKFS KTPEEL+ +R+DVVL Y EGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALP+QYRKLMTDPNSPIIDFYP DFEVDMNGKRF+WQGIAKLPFIDE RLLAEV KIE+TLT+EE RRNS M+DMLFVALSHPLSPYIFSLDDRCKQL DKERT++KEQIDP ASGGMNGYISLC GDPCP IFRSPVEG EDIMDNQVICAIY LPD H HI  PP GV  PKK+V+ GDL PEPVLWHEDSGRKPWEN R NPPG ISGR LG+AAHRLVAN+LQ+K D+N  GD    P   Y  T GP F   Q  R H QE  RMV P   YP     G+H   N     + ++ SY Q Y +S+ R P + +H       P   QSR+Y    ++  G  QN     P  P  AVQ   PI AG   YQQ GY +Y      G A  +HQ GG   P  N  VGR +GR Q  GNQF ALD
Sbjct:   66 MFDYIDRLYVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLRDEFEREGRKLPPKQESQVCDSNVITPGTEFMDVLSIALQYYIHLRLNNDPGWKSIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLAMATHEVHFSILREVVFTPGQQNKCFLCGQMGHLAAECEGKAKRKSGEFDEKGEGDVAKKPYQFLNIWTLREYLEYEMRIPNVPFEIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDSSKPNLSSVEHFIQAVGSYEDKIFQKRARLHQRQAGRLKREKAQAKRGDDVEPRLKPESMVPVARFHGSRLASGPSPSPYQATVLDIQSRQSGTSDGIGTHVRPKKVAHFSSGATIGAAIVEAENSLEIESQEHENKEELKAKLKELLREKSDVFNSGNPEEDKVKLGEPGWKERYYEEKFSGKTPEELEAIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALPEQYRKLMTDPNSPIIDFYPTDFEVDMNGKRFSWQGIAKLPFIDETRLLAEVEKIEHTLTEEEARRNSVMFDMLFVALSHPLSPYIFSLDDRCKQLTDKERTEMKEQIDPRASGGMNGYISLCTGDPCPPIFRSPVEGKEDIMDNQVICAIYRLPDTHKHITRPPAGVIFPKKSVTVGDLKPEPVLWHEDSGRKPWENGRQNPPGTISGRHLGEAAHRLVANNLQLKADQNGYGDQMYTPSSSYAATRGPPFSSYQNNRFHDQEYNRMVSPRNGYPSRSVYGQHRSSNPTTVQNHFEHSYGQ-YDASAARDPYSRYHTQYERSNPSAIQSREYSMHGFYPPGFQQNGGNRYP--PRDAVQT--PIHAGA-HYQQGGYSSYESYQSPGAAASYHQWGGGWAPPANQSVGRGFGRPQP-GNQFLALD 1050
[Close]
BLAST of XM_017397782.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BCI5 (5'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR037239} (3.1.13.- {ECO:0000256|PIRNR:PIRNR037239}))

HSP 1 Score: 1423.3 bits (3683), Expect = 0.000e+0
Identity = 752/1021 (73.65%), Postives = 810/1021 (79.33%), Query Frame = 0
 
Query:    1 MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEKAGRKLPPKQESQVCDSNVITPGTEFMAVLSVALQYYIHLRINNDPGWKSVKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHEIHFSILREVVFTPGQQNKCFLCGQMGHMAAECEGKAKRKNGEFDEKCE--IVPKKPYQFLHIWTLREYLELEMRIPNIPFTIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRALGGYLTDGSKPNLSRVEHFIQAVGSYEDKIFSKRARLHQRQAERVKRDKAQLKRGDDAEPQIKPD-MVPVARFHGSRLASGHAPSPYQHTQSANQ------------------------------------RAPKVARLSSEATIGAALVEAENNLENEAS--DNKEELKTKLKGILREKSDAFNSENPEEDKVKLGEPGWKERYYEEKFSAKTPEELDRVRRDVVLSYAEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALPQQYRKLMTDPNSPIIDFYPADFEVDMNGKRFAWQGIAKLPFIDEARLLAEVAKIEYTLTDEEVRRNSTMYDMLFVALSHPLSPYIFSLDDRCKQLDDKERTQIKEQIDPGASGGMNGYISLCAGDPCPTIFRSPVEGMEDIMDNQVICAIYILPDAHNHIAHPPPGVKLPKKTVSFGDLTPEPVLWHEDSGRKPWENKRNNPPGAISGRQLGDAAHRLVANSLQIKKDRNVDGDHYGHPP--YVTTHGPAFHPNQTLRHHGQEQYRMVPP--------AYPEGRHMLPNSVPGHSQYDRSYNQPYASSSTRHP-----NNWHRPPL--DQSRDYPPQVYHSQGSHQN-RHVYQPRG-PLHAVQ--APPPIAAGVPFYQQVGYQAY-------GGANYHHQNGG-PPTVNPRVGRDYGRHQQFGNQFSALD 951
            MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFE  GRKLP KQESQVCDSNVITPGTEFM+VLS+ALQYYIHLR+NNDPGWKSVKVILSDANVPGEGEHKIMSYIRLQRNLPG+DPNTRHCLYGLDADLIMLA+ATHE+HFSILREVVFTPGQQ+KCFLCGQMGH+AA CEGKAKRK+GEFDEK E  +V KKPYQFL+IWTLREYLE EMRI N PF IDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLL+AVYKKEFRALGGYLTD SKPNLS VEHFIQAVGSYEDKIF KRARLHQRQA R+KR+KAQ KRGDD EPQ+K D +VPV R+ GSRLASG +PSPYQ   S +                                     RA KVAR SS ATIGAA+VEAEN+LE E+   +NKEELK KLK +LREKSD FNS +PEEDKVKLG+PGWKERYYEEKFSAKTPEEL+ +R+DVVL Y EGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALP+QYRKLM+DPNSPIIDFYP DFEVDMNGKRF+WQGIAKLPFIDEARLLAEV KIE+TLT+EE RRNS M+DMLFVALSHPLSPYIFSLDDRCKQL DKER++IKEQ+DP ASGGMNGYISLCAGDPCP IFRSPVEG EDIMDNQVICAIY LPD H HI  PP GV  PKK V+ GDL PEPVLWHEDSGRKPWEN R NPPG ISGRQLG+AAHRLV NSLQ+K D+N  GD    PP  Y  T+GP F   Q          RMVPP         Y + R   P +VP H  +D SY Q YASS+   P       + R  L   Q+R+Y    Y+  G  QN  + Y P   P HAVQ     PI AG  F+QQ GY +Y       G A+Y   +G   P  N  VGR +G H Q G+QFSALD
Sbjct:   81 MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFESEGRKLPQKQESQVCDSNVITPGTEFMSVLSIALQYYIHLRLNNDPGWKSVKVILSDANVPGEGEHKIMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLAMATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAANCEGKAKRKSGEFDEKGEGDVVAKKPYQFLNIWTLREYLEYEMRILNAPFEIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDSSKPNLSSVEHFIQAVGSYEDKIFQKRARLHQRQAGRIKREKAQAKRGDDVEPQLKSDSLVPVGRYRGSRLASGPSPSPYQQHSSKSSVSVRNEYQLGKATTGISVLDIQNKQSGTSDGIGTHVRAKKVARFSSGATIGAAIVEAENSLETESQERENKEELKAKLKELLREKSDVFNSGDPEEDKVKLGDPGWKERYYEEKFSAKTPEELEAIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALPEQYRKLMSDPNSPIIDFYPIDFEVDMNGKRFSWQGIAKLPFIDEARLLAEVEKIEHTLTEEEARRNSVMFDMLFVALSHPLSPYIFSLDDRCKQLTDKERSEIKEQLDPRASGGMNGYISLCAGDPCPPIFRSPVEGKEDIMDNQVICAIYRLPDTHKHITRPPAGVIFPKKIVTVGDLKPEPVLWHEDSGRKPWENGRQNPPGTISGRQLGEAAHRLVVNSLQLKADQNGYGDQMYTPPSSYAATNGPPFSSYQY--------NRMVPPRTGYPSRSVYGQHRSSNPTTVPNH--FDHSYGQ-YASSAAHDPYSRSHTQYERSNLSASQTREYSMHGYYPPGFQQNGGNRYPPHALPQHAVQHAVQTPIPAGANFHQQGGYNSYASYQSHGGAASYQQWDGSRAPQANQSVGRGFG-HPQLGSQFSALD 1089
[Close]
BLAST of XM_017397782.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0GI08 (5'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR037239} (3.1.13.- {ECO:0000256|PIRNR:PIRNR037239}))

HSP 1 Score: 1413.28 bits (3657), Expect = 0.000e+0
Identity = 744/1016 (73.23%), Postives = 816/1016 (80.31%), Query Frame = 0
 
Query:    1 MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEKAGRKLPPKQESQVCDSNVITPGTEFMAVLSVALQYYIHLRINNDPGWKSVKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHEIHFSILREVVFTPGQQNKCFLCGQMGHMAAECEGKAKRKNGEFDEKCEIVP--KKPYQFLHIWTLREYLELEMRIPNIPFTIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRALGGYLTDGSKPNLSRVEHFIQAVGSYEDKIFSKRARLHQRQAERVKRDKAQLKRGDDAEPQIKPD-MVPVARFHGSRLASGHAPSPYQHTQSANQ-----RAPKVARLSSEATIGAALVEAENNLENEASDNKEELKTKLKGILREKSDAFNSENPEEDKVKLGEPGWKERYYEEKFSAKTPEELDRVRRDVVLSYAEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALPQQYRKLMTDPNSPIIDFYPADFEVDMNGKRFAWQGIAKLPFIDEARLLAEVAKIEYTLTDEEVRRNSTMYDMLFVALSHPLSPYIFSLDDRCKQLDDKERTQIKEQIDPGASGGMNGYISLCAGDPCPTIFRSPVEGMEDIMDNQVICAIYILPDAHNHIAHPPPGVKLPKKTVSFGDLTPEPVLWHEDSGRKPWENKRNNPPGAISGRQLGDAAHRLVANSLQIKKDRNVDGDH-YGHPP--YVTTHGPAFHPNQTLRHHGQEQYRMVP------PAYPEGRHMLPNSVPGHSQYDRSYNQPYASSSTRHP----------------------NNWHRPPLDQSRDYPPQVYHS---QGSHQNRHVYQPRGPLHAVQAPPPIAAGVPFYQQVG------YQAYGGANYHHQNGG-PPTVNPRVGRDYGRHQQFGNQFSALDISRGVRRPPPPPGYRR 967
            MFDYIDRLF+MVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKD+ADAAAEEE LREEFE+ GRKLP KQESQ CDSNVITPGTEFMAVLS+ALQYYIHLR+NNDPGWKS KVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHE+HFSILREVVFTPGQQ+KCFLCGQMGH+AA CEGKAKRK GEFDEK +  P  KKPYQFL+IWTLREYLE EMRIPN PF IDFE IVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRALGGYLTD SKPNLSRVEHFIQAVGSYEDKIF KRARLHQRQA+R+KRDK Q KR DDA+PQ+ P+ +VPVAR+HGSRLAS  +PSPY+ +++ +      R  K +RLSS AT+GAA+VEAEN+LE E  +NKEELKTKLK +LREKSDAFNSENP EDKVKLGEPGWK+RYYEEKF AKTPEEL+ +R+DVVL YAEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAAS+HALP+QYR+LM+DPNSPIIDFYP DFEVDMNGKR+AWQG+AKLPFIDE RLLAEVAK+E+TLT+EE+RRNS M+DMLFVALSHPLSPYIFSLDDRCKQL DKER + KEQ+DP ASGGMNGYISLCAGDPCP IFRSPV GMEDIMDNQVICAIY LPDAH HI  PP GV  PKK+V  GD+ P+P LWHED+GR+P EN R++  GAISG QLG+AA RLV NSLQ++ DRN  GD  +G PP  Y  T+       Q  R+H     RM P          +G H  PN     + +D+SY+QPYASS  R P                      NNW  P   Q+RDYP   Y+    Q +  NR+  Q R P   VQ   PI  G  ++QQ G      YQ  G   YH+ +G   P VN  VGR Y R QQ GNQFSA D  RG  R PPPPGY R
Sbjct:   81 MFDYIDRLFIMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDSADAAAEEESLREEFEREGRKLPGKQESQTCDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWKSTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAANCEGKAKRKAGEFDEKGDADPVAKKPYQFLNIWTLREYLEYEMRIPNPPFEIDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRALGGYLTDASKPNLSRVEHFIQAVGSYEDKIFQKRARLHQRQADRIKRDKVQAKRRDDADPQVNPESIVPVARYHGSRLASAPSPSPYRQSETCDDKKTYLRDRKRSRLSSGATVGAAIVEAENSLEIEIHENKEELKTKLKELLREKSDAFNSENPVEDKVKLGEPGWKQRYYEEKFCAKTPEELETIRKDVVLRYAEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASAHALPEQYRRLMSDPNSPIIDFYPTDFEVDMNGKRYAWQGVAKLPFIDEVRLLAEVAKVEHTLTEEEIRRNSMMFDMLFVALSHPLSPYIFSLDDRCKQLTDKERAETKEQLDPRASGGMNGYISLCAGDPCPPIFRSPVTGMEDIMDNQVICAIYRLPDAHKHITRPPAGVIFPKKSVMIGDVKPDPPLWHEDNGRRPRENGRHDRAGAISGPQLGEAAQRLVVNSLQLRTDRNGFGDQMHGRPPPSYGGTYRQPITSYQNNRYHDGGPNRMEPHRAGYHAQTAQGHHQPPNPAAVQNHFDQSYHQPYASSVARGPYVRSHPQHEREPYNRSHSQHERNNWSTP---QNRDYPMHGYYQPEFQPNGGNRYPAQGR-PQPGVQT--PIRTGSHYHQQSGRDDYGSYQPNGAVGYHNSSGSWVPPVNQSVGRGYVRPQQLGNQFSASD--RGASRNPPPPGYGR 1088
[Close]
BLAST of XM_017397782.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6US66 (5'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR037239} (3.1.13.- {ECO:0000256|PIRNR:PIRNR037239}))

HSP 1 Score: 1405.96 bits (3638), Expect = 0.000e+0
Identity = 722/1025 (70.44%), Postives = 810/1025 (79.02%), Query Frame = 0
 
Query:    1 MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEKAGRKLPPKQESQVCDSNVITPGTEFMAVLSVALQYYIHLRINNDPGWKSVKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHEIHFSILREVVFTPGQQNKCFLCGQMGHMAAECEGKAKRKNGEFDEK--CEIVPKKPYQFLHIWTLREYLELEMRIPNIPFTIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRALGGYLTDGSKPNLSRVEHFIQAVGSYEDKIFSKRARLHQRQAERVKRDKAQLKRGDDAEPQIKPD-MVPVARFHGSRLASGHAPSPYQHTQSANQ---------------------------------RAPKVARLSSEATIGAALVEAENNLENEASDNKEELKTKLKGILREKSDAFNSENPEEDKVKLGEPGWKERYYEEKFSAKTPEELDRVRRDVVLSYAEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALPQQYRKLMTDPNSPIIDFYPADFEVDMNGKRFAWQGIAKLPFIDEARLLAEVAKIEYTLTDEEVRRNSTMYDMLFVALSHPLSPYIFSLDDRCKQLDDKERTQIKEQIDPGASGGMNGYISLCAGDPCPTIFRSPVEGMEDIMDNQVICAIYILPDAHNHIAHPPPGVKLPKKTVSFGDLTPEPVLWHEDSGRKPWENKRNNPPGAISGRQLGDAAHRLVANSLQIKKDRNVDGDHYGHPP--YVTTHGPAFHPNQTLRHHGQE----------------------QYRMVPPAYPEGRHMLPNSVPGHSQYDRSYN--QPYASSSTRHPNNWHRPPLDQSRDYPPQVYHSQGSHQNRHVYQPRGPLHAVQAPPPIAAGVPFYQQV-GYQAYGGANYHHQNGG-PPTVNPRVGRDYGRHQQFGNQFSALDISRGVRRPPP 961
            +FDYIDRLFVMVRPRK+LYMAIDGVAPRAKMNQQRSRRFRAAKDAADAA EEE+LR+EFE+ GRKLPPKQESQV DSNVITPGT FMAVLS+ALQYYIHLR+NNDPGWK +KVILSDANVPGEGEHKIMSYIRLQRNLPG+DPNTRHCLYGLDADLIMLALATH++HFSILREVVFTPGQQ+KCFLCGQMGH+AA+C+GKAKRK+GEFDEK   E+ PKKP+QFLH+WTLREYLE EMRIPN P  ID ERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRA+GGYLTD SKPNLSRVEHFIQAVGSYEDKIF KRARLHQRQAER+KR+KAQ+KRGDD+EP ++P+ +V VARF GSRLASG +PSPYQ   S+                                   RA K+AR +S ATIGAA+VEAEN+LE +  +NKEELKT+LK  LREKSDAF+S  PEEDKVKLG+PGWKERYYE+KFSAKTPEELD +R+DVV+ Y EGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLK+LG L+I+FELGSPFKPFNQLLGVFPAAS+HALP+ YR+LMTDPNSPIIDFYPADFEVDMNGKRF+WQGIAKLPFIDEARLLAEVAK+E+TLT+EE RRNS M+DMLFV++SH LSPYIFSL+DRCKQL DKER ++KE +DPGASGGMNGYISLCAGDPCP IFRSP+EGMEDIM+NQVICA+Y LPDAH HIA P  GV  PK+ V+ GDL PEPVLWHEDSGR+P+EN R+NP GA+SG QLG+AAHRLVANSLQ+K DRN   D    PP  +   HGP   P Q  RH GQE                       YR  P  YP   +    S   + + DRS N  + Y S S  H N  +  P++ SR+YP   Y+  G HQ+     P  P H  +AP P   G  FY     +Q Y   NY+H  GG    V+P VGR+Y   +  GNQFSALD  RG  R PP
Sbjct:   81 IFDYIDRLFVMVRPRKVLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAVEEEKLRQEFEREGRKLPPKQESQVFDSNVITPGTPFMAVLSIALQYYIHLRLNNDPGWKDIKVILSDANVPGEGEHKIMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLALATHDVHFSILREVVFTPGQQDKCFLCGQMGHLAADCQGKAKRKSGEFDEKGDAEVSPKKPFQFLHVWTLREYLEYEMRIPNPPVEIDIERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRAMGGYLTDSSKPNLSRVEHFIQAVGSYEDKIFQKRARLHQRQAERIKREKAQVKRGDDSEPNVQPESLVAVARFTGSRLASGPSPSPYQQAGSSTSGKRDQLGKAASSMAVLDIQCKQPGKSDDKLTHIRAQKIARSTSGATIGAAIVEAENSLEIDVHENKEELKTRLKESLREKSDAFSSGTPEEDKVKLGQPGWKERYYEDKFSAKTPEELDEIRKDVVMRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKNLGDLDITFELGSPFKPFNQLLGVFPAASAHALPENYRRLMTDPNSPIIDFYPADFEVDMNGKRFSWQGIAKLPFIDEARLLAEVAKVEHTLTEEEARRNSVMFDMLFVSVSHRLSPYIFSLNDRCKQLTDKERLEVKEPLDPGASGGMNGYISLCAGDPCPPIFRSPIEGMEDIMNNQVICAVYKLPDAHKHIARPLAGVIFPKRIVAIGDLKPEPVLWHEDSGRRPFENGRHNPAGAVSGPQLGEAAHRLVANSLQVKADRNGFNDQMYIPPPTHYFPHGPPNVPFQKDRHQGQEPTLQQYTTGYSAQVSVRSHYDHSYRQ-PYTYPAAHNYQSRSHSHNERSDRSVNGSRIYQSRSHSH-NERNDRPVNGSREYPQHGYYQAGLHQSGGFGYPMHPQHVGRAPLP--PGATFYGSYESFQPYEAGNYNHWGGGWARQVDPNVGREYRHPRHSGNQFSALD--RGSHRRPP 1099
[Close]
BLAST of XM_017397782.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UGS5 (5'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR037239} (3.1.13.- {ECO:0000256|PIRNR:PIRNR037239}))

HSP 1 Score: 1405.58 bits (3637), Expect = 0.000e+0
Identity = 720/1021 (70.52%), Postives = 809/1021 (79.24%), Query Frame = 0
 
Query:    1 MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEKAGRKLPPKQESQVCDSNVITPGTEFMAVLSVALQYYIHLRINNDPGWKSVKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHEIHFSILREVVFTPGQQNKCFLCGQMGHMAAECEGKAKRKNGEFDEK--CEIVPKKPYQFLHIWTLREYLELEMRIPNIPFTIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRALGGYLTDGSKPNLSRVEHFIQAVGSYEDKIFSKRARLHQRQAERVKRDKAQLKRGDDAEPQIKPD-MVPVARFHGSRLASGHAPSPYQHTQSANQ---------------------------------RAPKVARLSSEATIGAALVEAENNLENEASDNKEELKTKLKGILREKSDAFNSENPEEDKVKLGEPGWKERYYEEKFSAKTPEELDRVRRDVVLSYAEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALPQQYRKLMTDPNSPIIDFYPADFEVDMNGKRFAWQGIAKLPFIDEARLLAEVAKIEYTLTDEEVRRNSTMYDMLFVALSHPLSPYIFSLDDRCKQLDDKERTQIKEQIDPGASGGMNGYISLCAGDPCPTIFRSPVEGMEDIMDNQVICAIYILPDAHNHIAHPPPGVKLPKKTVSFGDLTPEPVLWHEDSGRKPWENKRNNPPGAISGRQLGDAAHRLVANSLQIKKDRNVDGDHYGHPP--YVTTHGPAFHPNQTLRHHGQEQYRMVPP--AYPEGRHMLPNSVPGHSQYDRSYNQPYA-------SSSTRHPNNWHRPPLDQSRDYPPQVYHSQGSHQNRHVYQPRGPLHAVQAPPPIAAGVPFYQQVG-------YQAYGGANYHHQNGGPPTVNPRVGRDYGRHQQFGNQFSALDISRGVRRPPPPPGYRR 967
            +FDYIDRLFVMVRPRK+LYMAIDGVAPRAKMNQQRSRRFRAAKDAADAA EEE+LR+EFE+ GRKLPPKQESQV DSNVITPGT FMAVLS+ALQYYIHLR+NNDPGWK +KVILSDANVPGEGEHK+MSYIRLQRNLPG+DPNTRHCLYGLDADLIMLALATHE+HFSILREVVFTPGQQ+KCFLCGQMGH+AA+C+GKAKRK+GEFDEK   E+ PKKP+QFLH+WTLREYLE EMRIPN P  ID ERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRA+GGYLTD S PNLSRVEHFIQAVGSYEDKIF KRARLHQRQAER+KRDKAQ+KRGDD+EP ++P+ +V VARF GSRLASG +PSPYQ   S+                                   RA K+ARL+S ATIGA +VEAEN+LE +  +NKEELKT+LK +LREKSDAF+SE PEEDKVKLG+PGWKERYYE+KFSA+TPEELD +R+DVV+ Y EGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLK+LG L+I+FELGSPFKPFNQLLGVFPAAS+HALP+ YR+LMTDPNSPI+DFYPADFEVDMNGKRF+WQGIAKLPFIDE RLLAEVAK+E+TLT+EE RRNS M+DMLFV++SH LSPYIFSL+DRCKQL DKER ++KE +DPGASGGMNGYISLCAGDPCP IFRSP+EGMEDIM+NQVICA+Y LPDAH HIA P  GV  PK+ V+ GDL PEPVLWHEDSGR+P+EN R+NP GA+SG QLG+AAHRLVANSLQ+K DRN   D    PP  +   HGP   P Q  RH GQ     VP    Y  G +    SV  H  +D SY QPY         S +   N      ++ SR++P   Y+  G HQ      P  P H  +AP P   G  FYQQ G       +Q Y   NY+H       V+P VGR+Y   +  GNQFSALD  RG  R PP   +RR
Sbjct:   81 IFDYIDRLFVMVRPRKVLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAVEEEKLRQEFEREGRKLPPKQESQVFDSNVITPGTPFMAVLSIALQYYIHLRLNNDPGWKDIKVILSDANVPGEGEHKVMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAADCQGKAKRKSGEFDEKGDAEVSPKKPFQFLHVWTLREYLEYEMRIPNPPVEIDIERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRAMGGYLTDSSTPNLSRVEHFIQAVGSYEDKIFQKRARLHQRQAERIKRDKAQVKRGDDSEPNVQPESLVAVARFTGSRLASGPSPSPYQQAGSSTSGKRDQLGKPTSNMAVLDIQCKQPGKSDDKLTHIRAQKIARLTSGATIGAVIVEAENSLEIDVRENKEELKTRLKELLREKSDAFSSETPEEDKVKLGQPGWKERYYEDKFSAQTPEELDEIRKDVVMRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKNLGDLDITFELGSPFKPFNQLLGVFPAASAHALPENYRRLMTDPNSPILDFYPADFEVDMNGKRFSWQGIAKLPFIDETRLLAEVAKVEHTLTEEEARRNSVMFDMLFVSVSHRLSPYIFSLNDRCKQLTDKERLEVKEPLDPGASGGMNGYISLCAGDPCPPIFRSPIEGMEDIMNNQVICAVYKLPDAHKHIARPLAGVIFPKRIVAIGDLKPEPVLWHEDSGRRPFENGRHNPAGAVSGPQLGEAAHRLVANSLQVKADRNGFNDQMYIPPPTHYFPHGPPNAPFQKDRHQGQ-----VPTLQQYTTG-YSAQGSVRSH--HDHSYRQPYTYPAAHNYQSRSHSHNERSDRSVNGSREFPQHGYYQAGLHQTGGFGYPMHPQHVGRAPLP--PGATFYQQGGGYSSYESFQPYEAGNYNHWAR---QVDPNVGREYRHPRHSGNQFSALD--RGSHRRPPISEHRR 1086
[Close]
BLAST of XM_017397782.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6UL45 (5'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR037239} (3.1.13.- {ECO:0000256|PIRNR:PIRNR037239}))

HSP 1 Score: 1405.58 bits (3637), Expect = 0.000e+0
Identity = 720/1021 (70.52%), Postives = 809/1021 (79.24%), Query Frame = 0
 
Query:    1 MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEKAGRKLPPKQESQVCDSNVITPGTEFMAVLSVALQYYIHLRINNDPGWKSVKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHEIHFSILREVVFTPGQQNKCFLCGQMGHMAAECEGKAKRKNGEFDEK--CEIVPKKPYQFLHIWTLREYLELEMRIPNIPFTIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRALGGYLTDGSKPNLSRVEHFIQAVGSYEDKIFSKRARLHQRQAERVKRDKAQLKRGDDAEPQIKPD-MVPVARFHGSRLASGHAPSPYQHTQSANQ---------------------------------RAPKVARLSSEATIGAALVEAENNLENEASDNKEELKTKLKGILREKSDAFNSENPEEDKVKLGEPGWKERYYEEKFSAKTPEELDRVRRDVVLSYAEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALPQQYRKLMTDPNSPIIDFYPADFEVDMNGKRFAWQGIAKLPFIDEARLLAEVAKIEYTLTDEEVRRNSTMYDMLFVALSHPLSPYIFSLDDRCKQLDDKERTQIKEQIDPGASGGMNGYISLCAGDPCPTIFRSPVEGMEDIMDNQVICAIYILPDAHNHIAHPPPGVKLPKKTVSFGDLTPEPVLWHEDSGRKPWENKRNNPPGAISGRQLGDAAHRLVANSLQIKKDRNVDGDHYGHPP--YVTTHGPAFHPNQTLRHHGQEQYRMVPP--AYPEGRHMLPNSVPGHSQYDRSYNQPYA-------SSSTRHPNNWHRPPLDQSRDYPPQVYHSQGSHQNRHVYQPRGPLHAVQAPPPIAAGVPFYQQVG-------YQAYGGANYHHQNGGPPTVNPRVGRDYGRHQQFGNQFSALDISRGVRRPPPPPGYRR 967
            +FDYIDRLFVMVRPRK+LYMAIDGVAPRAKMNQQRSRRFRAAKDAADAA EEE+LR+EFE+ GRKLPPKQESQV DSNVITPGT FMAVLS+ALQYYIHLR+NNDPGWK +KVILSDANVPGEGEHK+MSYIRLQRNLPG+DPNTRHCLYGLDADLIMLALATHE+HFSILREVVFTPGQQ+KCFLCGQMGH+AA+C+GKAKRK+GEFDEK   E+ PKKP+QFLH+WTLREYLE EMRIPN P  ID ERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRA+GGYLTD S PNLSRVEHFIQAVGSYEDKIF KRARLHQRQAER+KRDKAQ+KRGDD+EP ++P+ +V VARF GSRLASG +PSPYQ   S+                                   RA K+ARL+S ATIGA +VEAEN+LE +  +NKEELKT+LK +LREKSDAF+SE PEEDKVKLG+PGWKERYYE+KFSA+TPEELD +R+DVV+ Y EGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLK+LG L+I+FELGSPFKPFNQLLGVFPAAS+HALP+ YR+LMTDPNSPI+DFYPADFEVDMNGKRF+WQGIAKLPFIDE RLLAEVAK+E+TLT+EE RRNS M+DMLFV++SH LSPYIFSL+DRCKQL DKER ++KE +DPGASGGMNGYISLCAGDPCP IFRSP+EGMEDIM+NQVICA+Y LPDAH HIA P  GV  PK+ V+ GDL PEPVLWHEDSGR+P+EN R+NP GA+SG QLG+AAHRLVANSLQ+K DRN   D    PP  +   HGP   P Q  RH GQ     VP    Y  G +    SV  H  +D SY QPY         S +   N      ++ SR++P   Y+  G HQ      P  P H  +AP P   G  FYQQ G       +Q Y   NY+H       V+P VGR+Y   +  GNQFSALD  RG  R PP   +RR
Sbjct:   81 IFDYIDRLFVMVRPRKVLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAVEEEKLRQEFEREGRKLPPKQESQVFDSNVITPGTPFMAVLSIALQYYIHLRLNNDPGWKDIKVILSDANVPGEGEHKVMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAADCQGKAKRKSGEFDEKGDAEVSPKKPFQFLHVWTLREYLEYEMRIPNPPVEIDIERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRAMGGYLTDSSTPNLSRVEHFIQAVGSYEDKIFQKRARLHQRQAERIKRDKAQVKRGDDSEPNVQPESLVAVARFTGSRLASGPSPSPYQQAGSSTSGKRDQLGKPTSNMAVLDIQCKQPGKSDDKLTHIRAQKIARLTSGATIGAVIVEAENSLEIDVRENKEELKTRLKELLREKSDAFSSETPEEDKVKLGQPGWKERYYEDKFSAQTPEELDEIRKDVVMRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKNLGDLDITFELGSPFKPFNQLLGVFPAASAHALPENYRRLMTDPNSPILDFYPADFEVDMNGKRFSWQGIAKLPFIDETRLLAEVAKVEHTLTEEEARRNSVMFDMLFVSVSHRLSPYIFSLNDRCKQLTDKERLEVKEPLDPGASGGMNGYISLCAGDPCPPIFRSPIEGMEDIMNNQVICAVYKLPDAHKHIARPLAGVIFPKRIVAIGDLKPEPVLWHEDSGRRPFENGRHNPAGAVSGPQLGEAAHRLVANSLQVKADRNGFNDQMYIPPPTHYFPHGPPNAPFQKDRHQGQ-----VPTLQQYTTG-YSAQGSVRSH--HDHSYRQPYTYPAAHNYQSRSHSHNERSDRSVNGSREFPQHGYYQAGLHQTGGFGYPMHPQHVGRAPLP--PGATFYQQGGGYSSYESFQPYEAGNYNHWAR---QVDPNVGREYRHPRHSGNQFSALD--RGSHRRPPISEHRR 1086
[Close]
BLAST of XM_017397782.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PZN8 (5'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR037239} (3.1.13.- {ECO:0000256|PIRNR:PIRNR037239}))

HSP 1 Score: 1401.34 bits (3626), Expect = 0.000e+0
Identity = 741/1018 (72.79%), Postives = 817/1018 (80.26%), Query Frame = 0
 
Query:    1 MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEKAGRKLPPKQESQVCDSNVITPGTEFMAVLSVALQYYIHLRINNDPGWKSVKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHEIHFSILREVVFTPGQQNKCFLCGQMGHMAAECEGKAKRKNGEFDEKCEIVP--KKPYQFLHIWTLREYLELEMRIPNIPFTIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRALGGYLTDGSKPNLSRVEHFIQAVGSYEDKIFSKRARLHQRQAERVKRDKAQLKRGDDAEPQIKPD-MVPVARFHGSRLASGHAPSPYQHTQSANQ-----RAPKVARLSSEATIGAALVEAENNLENEASDNKEELKTKLKGILREKSDAFNSENPEEDKVKLGEPGWKERYYEEKFSAKTPEELDRVRRDVVLSYAEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALPQQYRKLMTDPNSPIIDFYPADFEVDMNGKRFAWQGIAKLPFIDEARLLAEVAKIEYTLTDEEVRRNSTMYDMLFVALSHPLSPYIFSLDDRCKQLDDKERTQIKEQIDPGASGGMNGYISLCAGDPCPTIFRSPVEGMEDIMDNQVICAIYILPDAHNHIAHPPPGVKLPKKTVSFGDLTPEPVLWHEDSGRKPWENK--RNNPPGAISGRQLGDAAHRLVANSLQIKKDRNVDGDH-YGHPP--YVTTHGPAFHPNQTLRHHGQEQYRMVP------PAYPEGRHMLPNSVPGHSQYDRSYNQPYASSSTRHP----------------------NNWHRPPLDQSRDYPPQVYHS---QGSHQNRHVYQPRGPLHAVQAPPPIAAGVPFYQQVG------YQAYGGANYHHQNG-GPPTVNPRVGRDYGRHQQFGNQFSALDISRGVRRPPPPPGYRR 967
            MFDYIDR+F+MVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEE LREEFE+ GRKLP KQESQ CDSNVITPGTEFMAVLS+ALQYY+HLR+NNDPGWKS KVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHE+HFSILREVVFTPGQQ+KCFLCGQ+GH+AA CEGKAKRK GEFDEK +  P  KKPYQFL+IWTLREYLE EMRIPN PF IDFE IVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRALGGYLTD SKPNLSRVEHFIQAVGSYEDKIF KRARLHQRQA+R+KRDKAQ KR DDA+PQ+ P+ +V VAR+HGSRLAS  +PSPYQ +++ +      R  K  RLSS AT+GAA+VEAEN+LE E  +NKEELKTKLK +LREKSDAFNSENPEEDKVKLGEPGWK+RYYEEKF AKTPEEL+ +R+DVVL YAEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAAS+HALP+QYR+LM+DPNSPIIDFYP DFEVDMNGKR+AWQG+AKLPFIDE RLLAEVAK+E+TLT+EE+RRNS M+DMLFVALSHPLSPYIFSL+DRCKQL DKER + KEQ+DP ASGGMNGYISLCAGDPCP IFRSPV GMEDIMDNQVICAIY LPDAH HI  PP GV  PKK+V  GD+ P+P LWHED+GR+P EN   R++  GA+SG QLG+AA RLV NSLQ++ DRN  GD  +G PP  Y  T+       Q  R+H +   RM P          +G H  PN     + +D+SY+QPYASS  R P                      NNW  P   Q+RDYP   Y+    + +  NR+  Q R P   VQ   PI  G  ++QQ G      YQ  G   YH+ +G   P VN  VGR Y R QQ GNQFSA D  RG  R PPPPGY R
Sbjct:   81 MFDYIDRIFIMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEESLREEFEREGRKLPVKQESQTCDSNVITPGTEFMAVLSIALQYYVHLRLNNDPGWKSTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQIGHLAANCEGKAKRKAGEFDEKGDADPVAKKPYQFLNIWTLREYLEYEMRIPNPPFEIDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRALGGYLTDASKPNLSRVEHFIQAVGSYEDKIFQKRARLHQRQADRIKRDKAQAKRRDDADPQVNPESIVLVARYHGSRLASAPSPSPYQQSETCDDKKTYLRDRKRPRLSSGATVGAAIVEAENSLEIEIHENKEELKTKLKELLREKSDAFNSENPEEDKVKLGEPGWKQRYYEEKFCAKTPEELETIRKDVVLRYAEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASAHALPEQYRRLMSDPNSPIIDFYPTDFEVDMNGKRYAWQGVAKLPFIDEDRLLAEVAKVEHTLTEEEIRRNSMMFDMLFVALSHPLSPYIFSLNDRCKQLTDKERAETKEQLDPRASGGMNGYISLCAGDPCPPIFRSPVTGMEDIMDNQVICAIYRLPDAHKHITRPPAGVIFPKKSVMIGDVKPDPPLWHEDNGRRPRENGSFRHDRAGAVSGPQLGEAAQRLVVNSLQLRTDRNGFGDQMHGRPPPSYGGTYRQPITSYQNNRYHDKGPNRMEPHRAGYHAQTAQGHHRPPNPAAVQNHFDQSYHQPYASSVARGPYVRSHPQHEREPYNRSHSQHERNNWSTP---QNRDYPMHGYYQPEFEPNGGNRYPAQGR-PHPGVQT--PIRTGSHYHQQSGHDDYGSYQPNGAVGYHNSSGIWVPPVNQSVGRGYVRPQQLGNQFSASD--RGASRNPPPPGYGR 1090
[Close]
BLAST of XM_017397782.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H077 (5'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR037239} (3.1.13.- {ECO:0000256|PIRNR:PIRNR037239}))

HSP 1 Score: 1400.96 bits (3625), Expect = 0.000e+0
Identity = 739/1001 (73.83%), Postives = 809/1001 (80.82%), Query Frame = 0
 
Query:    1 MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEKAGRKLPPKQESQVCDSNVITPGTEFMAVLSVALQYYIHLRINNDPGWKSVKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHEIHFSILREVVFTPGQQNKCFLCGQMGHMAAECEGKAKRKNGEFDEKCEI--VPKKPYQFLHIWTLREYLELEMRIPNIPFTIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRALGGYLTDGSKPNLSRVEHFIQAVGSYEDKIFSKRARLHQRQAERVKRDKAQLKRGDDAEPQIKPD-MVPVARFHGSRLASGHAPSPYQH-------TQSANQRAPKVARLSSEATIGAALVEAENNLENEASDNKEELKTKLKGILREKSDAFNSENPEEDKVKLGEPGWKERYYEEKFSAKTPEELDRVRRDVVLSYAEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALPQQYRKLMTDPNSPIIDFYPADFEVDMNGKRFAWQGIAKLPFIDEARLLAEVAKIEYTLTDEEVRRNSTMYDMLFVALSHPLSPYIFSLDDRCKQLDDKERTQIKEQIDPGASGGMNGYISLCAGDPCPTIFRSPVEGMEDIMDNQVICAIYILPDAHNHIAHPPPGVKLPKKTVSFGDLTPEPVLWHEDSGRKPWENKRNNPPGAISGRQLGDAAHRLVANSLQIKKDRNVDGD--HYGHPPYVTTHGPAFHPNQTLRHHGQEQYRMV--PPAYPEG---RHMLPNSVPGHSQYDRSYNQPYASSSTRHPNNWHRPPLDQSRDYPPQVYHSQGSHQNRH-VYQPRGPLHAVQAPPPIAAGVP----FYQQVGYQAYGGANYHH-QNGGPP----TVNPRVG-------RDYGRHQQFGNQFSALDISRGVRRPPPPPGYRR 967
            MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEK GRKLPPKQ+SQVCDSNVITPGTEFM VLSVALQYYIHLR+NNDPGWKS+KVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHE+HFSILRE+VFTPGQQ+KCF+CGQMGH+AA+CEGKAKRK GEFDEK +   V KKPYQFL+IWTLREYLE EMRIPN+PF IDFE IVDDFIFMCFFVGNDFLPHMPTLEIREGAINLL+AVYKKE RA+GGYLTD SKPNLS VEHFIQAVGSYEDKIF KRARLHQRQAER+KR+KAQ +RGDDA+PQ+KP+ +VPV+R+HGSRLAS   PSPYQ        + ++  +  KVAR SS AT+GAA+VEAEN+LE E  DNK+ELK KLK +LREKSD FNS+NPEEDKVKLGE GWKERYYEEKFS KTPEE + +R DVVL Y EGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALP++YRKLMTDPNSPIIDFYP DFEVDMNGKRFAWQGIAKLPFIDEARLLAEV KIE+TLT+EE RRNS M+DMLFVALSHPLSPYIFSLDDRCK+L D ERT++KEQ+DP ASGGMNGYISLC GDPCP IFRSP+  +EDIMDNQVICAIY LPDAH HI  PP GV  PKK VS GDL PEPVLWHED+GR+PWEN R N PG ISGRQLG+AAHRLV NSLQ+K +RN  GD  H   P     +GP        R+H QE +RM    P Y +    R   P SV  H  +D  Y+QP+ASS+T H  +++R P+          Y+  G HQN    Y PR      Q   P  A +P         GYQ+YG ++YH   +G PP      NPR         R YG  QQ GNQ+S LD  R   R PPPPGY R
Sbjct:   81 MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEKEGRKLPPKQQSQVCDSNVITPGTEFMGVLSVALQYYIHLRLNNDPGWKSIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHEVHFSILREIVFTPGQQDKCFMCGQMGHLAADCEGKAKRKAGEFDEKGQSASVVKKPYQFLNIWTLREYLEYEMRIPNLPFEIDFEHIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKELRAMGGYLTDSSKPNLSNVEHFIQAVGSYEDKIFQKRARLHQRQAERIKREKAQARRGDDADPQVKPEFLVPVSRYHGSRLASAPTPSPYQQHEIKSKQSGTSGSQGRKVARFSSGATVGAAIVEAENDLETELHDNKDELKAKLKELLREKSDLFNSKNPEEDKVKLGEAGWKERYYEEKFSTKTPEEQEAMRNDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALPEEYRKLMTDPNSPIIDFYPTDFEVDMNGKRFAWQGIAKLPFIDEARLLAEVQKIEHTLTEEEFRRNSVMFDMLFVALSHPLSPYIFSLDDRCKKLTDNERTEVKEQLDPRASGGMNGYISLCGGDPCPPIFRSPIASLEDIMDNQVICAIYRLPDAHKHITRPPVGVTFPKKIVSVGDLKPEPVLWHEDNGRRPWENGRQNLPGTISGRQLGEAAHRLVVNSLQVKAERNGFGDQMHAPPPYPAAPYGPPLSSYSDNRYHNQEHHRMALPRPDYSDQTYRRSSNPASVRNH--FDHRYDQPHASSATGH--HYNRSPV--------HGYYQPGFHQNDGPGYHPR---QEAQTHIPAGAQLPGQGGHNSHHGYQSYGASSYHEWASGWPPEGNNQSNPRGHGHPQGNPRGYGHPQQLGNQYSVLD--RRANRGPPPPGYDR 1064
[Close]
BLAST of XM_017397782.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LFE7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7137536.1}))

HSP 1 Score: 1395.18 bits (3610), Expect = 0.000e+0
Identity = 740/1003 (73.78%), Postives = 809/1003 (80.66%), Query Frame = 0
 
Query:    1 MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEKAGRKLPPKQESQVCDSNVITPGTEFMAVLSVALQYYIHLRINNDPGWKSVKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHEIHFSILREVVFTPGQQNKCFLCGQMGHMAAECEGKAKRKNGEFDEK--CEIVPKKPYQFLHIWTLREYLELEMRIPNIPFTIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRALGGYLTDGSKPNLSRVEHFIQAVGSYEDKIFSKRARLHQRQAERVKRDKAQLKRGDDAEPQIKPD-MVPVARFHGSRLASGHAPSPYQH--TQSANQRAPKVARLSSEATIGAALVEAENNLENEASDNKEELKTKLKGILREKSDAFNSENPEEDKVKLGEPGWKERYYEEKFSAKTPEELDRVRRDVVLSYAEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALPQQYRKLMTDPNSPIIDFYPADFEVDMNGKRFAWQGIAKLPFIDEARLLAEVAKIEYTLTDEEVRRNSTMYDMLFVALSHPLSPYIFSLDDRCKQLDDKERTQIKEQIDPGA----SGGMNGYISLCAGDPCPTIFRSPVEGMEDIMDNQVICAIYILPDAHNHIAHPPPGVKLPKKTVSFGDLTPEPVLWHEDSGRKPWENKRNNPPGAISGRQLGDAAHRLVANSLQIKKDRNVDGDHYGHPPY--VTTHGPAFHPNQTLRHHGQEQYRMVPPAYPEGRHMLPNSVPGHSQYDRSYNQPYASSSTRHP-----------------NNWHRPPLDQSRDY-PPQVYHSQGSHQNRHVYQPRG--PLHAVQAPPPIAAGVPFYQQVG---YQAYGGANYHHQNGG-PPTVNPRVGRDYGRHQQFGNQFSALDISRG-VRRPPPPPGYRR 967
            MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEE LREEFE+ GRKLPPK ESQ CDSNVITPGT+FM VLSVALQYYIHLR+NNDPGWKS KVILSDANVPGEGEHKIMSYIRLQRNLPG+DPNTRHCLYGLDADLIMLALATHEIHFSILREVVFTPGQQ KCFLCGQMGH+AA+CEGKAKRK GEFDEK   ++V KKPYQFL+IWTLREYLE EMRIPN+PF +D E IVDDFIFMCFFVGNDFLPHMPTLEIREGAINLL+AVYKKE R+LGGYLTDGS+P++SRVEHFIQAVGSYEDKIF KRARLHQRQAER+KRDKAQ KRGDDAEPQ+KP+ +VPV RFHGSRLASG + SPYQ   ++S  ++A + +  SS A++GAA+VEAEN+LE E  +NKEELKTKLK +LREKSDAFNSENPEEDKVKLGEPGWKERYYEEKFSA+T EELD +R+DVVL Y EGLCWVM YYYEGVCSWQWFYPYHYAPFASDLKDL QLNISFELGSPFKPFNQLLGVFPAASSHALP+ YR+LMTDPNSP+IDFYP+DFEVDMNGKR+AWQGIAKLPFIDEARLLAEVA++E+TLT+EEVRRNS M+DMLFVALSHPLSPYIFSL+DRCKQL DKER +IKEQ+D  A    SGGMNGYISLCAGDPCP IFRSPV GMEDIMDNQVICAIYILPDAH HI  PP GV  PKK V+  DL PEP LWHEDSGRKPWEN+R +PPG ISGRQLGDAAHRLV NSLQ +   N   D     P+  + T+GP   P Q  R+  QE+  M             N     + +D  Y+QPYAS +   P                 N  +     QSR+Y P + Y+  G  QN     P    P H VQ P P   G  F QQ G   YQ+YG A YH  + G  P      GR Y R QQ GNQFSAL  SRG  R+PPPPPGYRR
Sbjct:  119 MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEELLREEFEREGRKLPPKVESQTCDSNVITPGTQFMGVLSVALQYYIHLRLNNDPGWKSTKVILSDANVPGEGEHKIMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEIHFSILREVVFTPGQQGKCFLCGQMGHLAADCEGKAKRKAGEFDEKGDADVVAKKPYQFLNIWTLREYLEYEMRIPNLPFEMDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKELRSLGGYLTDGSQPHISRVEHFIQAVGSYEDKIFQKRARLHQRQAERIKRDKAQSKRGDDAEPQVKPESLVPVTRFHGSRLASGPSHSPYQQKGSESRARKAARSSSGSSGASVGAAIVEAENSLETEICENKEELKTKLKEVLREKSDAFNSENPEEDKVKLGEPGWKERYYEEKFSAQTAEELDCIRKDVVLRYTEGLCWVMRYYYEGVCSWQWFYPYHYAPFASDLKDLDQLNISFELGSPFKPFNQLLGVFPAASSHALPEHYRRLMTDPNSPLIDFYPSDFEVDMNGKRYAWQGIAKLPFIDEARLLAEVARLEHTLTEEEVRRNSIMFDMLFVALSHPLSPYIFSLNDRCKQLTDKERAEIKEQLDSRARATCSGGMNGYISLCAGDPCPPIFRSPVFGMEDIMDNQVICAIYILPDAHKHITRPPSGVVFPKKIVAIEDLKPEPTLWHEDSGRKPWENRRQDPPGNISGRQLGDAAHRLVVNSLQARAGPNSYSDQMHRTPHPSIVTYGPHSSPYQNNRYQDQERNNM----------RSSNVATVRNHFDHGYSQPYASVAVHDPYSRSHHERDHYDRSYRRNESNHQSTTQSREYNPNRGYYPPGFQQNGGNRYPAHAPPHHGVQTPIP--GGAHFPQQGGYNSYQSYGAATYHDPSAGWAPQAENGAGRGYSRPQQLGNQFSAL--SRGSSRQPPPPPGYRR 1107
[Close]
BLAST of XM_017397782.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2QYE9 (5'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR037239} (3.1.13.- {ECO:0000256|PIRNR:PIRNR037239}))

HSP 1 Score: 1380.54 bits (3572), Expect = 0.000e+0
Identity = 721/1021 (70.62%), Postives = 801/1021 (78.45%), Query Frame = 0
 
Query:    1 MFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEKAGRKLPPKQESQVCDSNVITPGTEFMAVLSVALQYYIHLRINNDPGWKSVKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHEIHFSILREVVFTPGQQNKCFLCGQMGHMAAECEGKAKRKNGEFDEKCE--IVPKKPYQFLHIWTLREYLELEMRIPNIPFTIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRALGGYLTDGSKPNLSRVEHFIQAVGSYEDKIFSKRARLHQRQAERVKRDKAQLKRGDDAEPQIKPD-MVPVARFHGSRLASGHAPSPYQH------------------------------TQSANQRAPKVARLSSEATIGAALVEAENNLENEASDNKEELKTKLKGILREKSDAFNSENPEEDKVKLGEPGWKERYYEEKFSAKTPEELDRVRRDVVLSYAEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALPQQYRKLMTDPNSPIIDFYPADFEVDMNGKRFAWQGIAKLPFIDEARLLAEVAKIEYTLTDEEVRRNSTMYDMLFVALSHPLSPYIFSLDDRCKQLDDKERTQIKEQIDP----GASGGMNGYISLCAGDPCPTIFRSPVEGMEDIMDNQVICAIYILPDAHNHIAHPPPGVKLPKKTVSFGDLTPEPVLWHEDSGRKPWENKRNNPPGAISGRQLGDAAHRLVANSLQIKKDRNVDGDHYGHPPYVTTHGPAFHPNQTLRHHGQEQYRMVPPAYPEGRHMLPNSVPGHSQYDRSYNQPYASSSTRHPNNWHRPPLDQSRDYPPQVYHSQGSHQNRHVYQPRGPLHAVQAPPPIAAGVPFYQ----------QVGYQAY------GGANYHHQNGGPPTVNPRVGRDYGRHQQFGNQFSALDISRGVRRP-PPPPGYRR 967
            MFDYIDRLF MVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEE RLREEFEK GRKLPPKQESQ+CDSNVITPGTEFMAVLS+ALQYY+HLR+NNDPGW++VKV++SDANVPGEGEHKIMSYIRLQRNLPG+DPNTRHCLYGLDADLIMLALATHEIHFSILREVVFTPGQQ+KCFLCGQMGH A++CEGKAKRK GEFDEK +  +V KKP+QFLHIWTLREYLE EM IPN PF IDFE IVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLA+YKKE RA+GGYLT+GSKPNLSRVEHFIQAVGS+EDKIF KRARLHQRQ+ER+KRDKAQ KR DDAEPQ++P+ +VPVARFHGSRLASG +PSP+Q                                +S   R  KVAR SS A+IGAA+VEAEN+LE + ++NKEELK KLK ILREKSDAFNS+NPEEDKVKLG PGWKERYYEEKFSA+TPEEL+ +RRDVVLSY EGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDL  LNISFELG+PFKPFNQLLGVFPAASSHALP+ YRKLMTDPNSPIIDFYPADFEVDMNGKRFAWQGIAKLPFIDEARLLAEV KIE+TLT+EEVRRNS M+DMLFV  SHPLS  I  LD++CK+L DKER ++KE+I+P      SGGMNGY+S C G+P P IFRSPV GMED++DNQVICAIY LPD H HI  PP GVK PKK V+ GDL PEPVLWHEDSGRKPWEN R  P GAISG+ LG+AAHRLV NSLQ+K DRN  G+    PP+ +   P + P Q   +   +     P  +P G     NS+ G   +D  Y  PY SS+  HPNN  RP           V H+ G H +R++Y P  P    Q   P+ AG+P  Q          Q GY ++      G ++  H   G PT N    R Y R QQ GNQ+S LD  RG +RP PPPPGY R
Sbjct:   81 MFDYIDRLFGMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEARLREEFEKEGRKLPPKQESQICDSNVITPGTEFMAVLSIALQYYVHLRLNNDPGWENVKVLISDANVPGEGEHKIMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEIHFSILREVVFTPGQQDKCFLCGQMGHFASDCEGKAKRKAGEFDEKGDSAVVAKKPFQFLHIWTLREYLEHEMTIPNCPFKIDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAIYKKELRAMGGYLTNGSKPNLSRVEHFIQAVGSFEDKIFQKRARLHQRQSERIKRDKAQAKRRDDAEPQVQPESLVPVARFHGSRLASGPSPSPFQQRGFNHRSEGSMSVRKDYPLGQATSGMSGLEIKSKQSRPHKVARYSSGASIGAAIVEAENDLEIDVNENKEELKVKLKEILREKSDAFNSKNPEEDKVKLGSPGWKERYYEEKFSARTPEELEAIRRDVVLSYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLSDLNISFELGTPFKPFNQLLGVFPAASSHALPEHYRKLMTDPNSPIIDFYPADFEVDMNGKRFAWQGIAKLPFIDEARLLAEVQKIEHTLTEEEVRRNSMMFDMLFVKSSHPLSVCISILDEKCKRLTDKERVEVKERIEPEKRAKCSGGMNGYLSPCGGEPRPPIFRSPVTGMEDVIDNQVICAIYRLPDMHEHITRPPVGVKFPKKIVNLGDLKPEPVLWHEDSGRKPWENGRQAPSGAISGQHLGEAAHRLVVNSLQVKVDRNGYGNRMHAPPH-SYPVPPYRP-QLPSYQNNQMPPPRPGHHPRGPPQYSNSI-GQGYHDDGYKPPYVSSAPHHPNN--RPQPQNYERNNRSVTHNSGEH-SRNIYYP--PSGGGQIAVPMFAGIPLAQTPNGVRAHPYQAGYNSFQNYQPPGASSQQHWLNGAPTANHSYPRGYSRPQQSGNQYSVLD-KRGNKRPQPPPPGYGR 1092
Match NameStatsDescription
A0A5J5B2R2E-Value: 0.000e+0, PID: 76.215'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR0372... [more]
A0A5B7BCI5E-Value: 0.000e+0, PID: 73.655'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR0372... [more]
A0A7J0GI08E-Value: 0.000e+0, PID: 73.235'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR0372... [more]
A0A6P6US66E-Value: 0.000e+0, PID: 70.445'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR0372... [more]
A0A068UGS5E-Value: 0.000e+0, PID: 70.525'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR0372... [more]
A0A6P6UL45E-Value: 0.000e+0, PID: 70.525'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR0372... [more]
A0A2R6PZN8E-Value: 0.000e+0, PID: 72.795'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR0372... [more]
F6H077E-Value: 0.000e+0, PID: 73.835'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR0372... [more]
A0A834LFE7E-Value: 0.000e+0, PID: 73.78(Uncharacterized protein {ECO:0000313|EMBL:KAF7137... [more]
A0A7N2QYE9E-Value: 0.000e+0, PID: 70.625'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR0372... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.