Resource Type:
Polypeptide
Name:
XM_017397187.1
Identifier:
XM_017397187.1-protein
Sequence:
MLSLVSSSSTPSSSSSLSQFHQTCFLPFLPQRLLLNSIWQKSPSEEFHFS
TIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPT
PKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRD
TLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKH
KRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDE
SDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDI
ADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGR
NFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVL
NKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQK
DNLSSEISEKARRIKEIEEYPRPNAVVGVSVLKGTNINEMLKEIRAALRK
CSDPNEVLNK
Sequence Length:
510
Sequence Checksum:
2fe8d73e02895bf04af360c53e172727
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017397187.1, derives from mRNA, XM_017397187.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017397187.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017397187.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BXS2 ((Putative GTP-binding protein OBGC2 isoform X1 {ECO:0000313|EMBL:MPA73465.1}) (3.6.5.- {ECO:0000313|EMBL:MPA73465.1}))
HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0
Identity = 368/482 (76.35%), Postives = 411/482 (85.27%), Query Frame = 0
Match: A0A5B7BXS2 ((Putative GTP-binding protein OBGC2 isoform X1 {ECO:0000313|EMBL:MPA73465.1}) (3.6.5.- {ECO:0000313|EMBL:MPA73465.1}))
HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0
Identity = 368/482 (76.35%), Postives = 411/482 (85.27%), Query Frame = 0
Query: 28 FLPQRLLLNSI-WQKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVGVSVLKGTNINEMLKEIRAALRKCSDPNEVL 508
F RLL S Q+S SE F +S +KCRLAR K PP P PD LI+EPHKYFDQV++TVR+GDGGHGA+L+MP +AP KS ++DK KTRK+ KRDFDGSLILPMGGHG D+VIY DEG+DTLLEFHKKSR++AKRGGNVDAM +LTS L +G A P+LRIPVP GTVVKHKRGKFLADLA PGDEILVARGGQGGISLLEMP+H +KK+M +T+NVMRD+SDKVL+LGQPGEEVSL+LILRVVADVGLVGLPNAGKSTLLAA TLA+PDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAA++PVNDYRTVKEELRMYNPDYLERP IVVLNKIDIPEA ++LP L +EI+RIGS+E +Q + D +QS + + E LSS S+K RR+KEIEEYP P AVVGVSVLKG I EMLKEIR ALRK D NE L
Sbjct: 33 FFSGRLLPKSFSQQRSSSENFQYSILKCRLARAKKPPSPCPDTLIREPHKYFDQVIITVRSGDGGHGAILSMPNQRAPPKSEGRHDKPKTRKKSLGKRDFDGSLILPMGGHGADVVIYADEGKDTLLEFHKKSRYNAKRGGNVDAMGVLTSQLHDGFAAPTLRIPVPVGTVVKHKRGKFLADLANPGDEILVARGGQGGISLLEMPEHMRKKIMALTTNVMRDDSDKVLVLGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLARPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAENPVNDYRTVKEELRMYNPDYLERPYIVVLNKIDIPEARDRLPSLTQEILRIGSNEVPSQPETRFGDAVQSLPAED-ELASVLSSGASDKDRRVKEIEEYPCPLAVVGVSVLKGIRIKEMLKEIREALRKYRDSNEAL 513
BLAST of XM_017397187.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251UQJ0 ((Putative GTP-binding protein OBGC2 {ECO:0000313|EMBL:OTG25605.1}))
HSP 1 Score: 696.427 bits (1796), Expect = 0.000e+0
Identity = 358/510 (70.20%), Postives = 403/510 (79.02%), Query Frame = 0
Match: A0A251UQJ0 ((Putative GTP-binding protein OBGC2 {ECO:0000313|EMBL:OTG25605.1}))
HSP 1 Score: 696.427 bits (1796), Expect = 0.000e+0
Identity = 358/510 (70.20%), Postives = 403/510 (79.02%), Query Frame = 0
Query: 4 LVSSSSTPSSSSSLSQFHQTCFLP---FLPQRLLLNSIW--QKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVGVSVLKGTNINEMLKEIRAALRKCSDPNEVL 508
++S S + S +S S F T P F L LN W QK+ F +KCRLA+ K+ PS ++L +EPHKYFDQ ++TVRAGDGGHGA L+M KA KS +K DK K R R S+KRDFDGSLILPMGGHGGD+VIY DEG+D+LLEFHKK+RF+AKRGGNVD M + S L NG A P+LRIPVP GTVVKHKRGKFLADLA+ GDEILVARGGQGGISLLEMP HKKKKMM MTSNVM DE+DKVL+LGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLL+A TLAKPDIADYPFTTLMPNLGRL+GDPSLGAGK+SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR+LVHVVDAAA+DPV DY+TVKEELRMYNP+YLERP +VVLNKIDIPEA NKLP+L EEI +IGS+E Q S+ E NL+ S + ++IKEI+EYPRP AVVGVSVLK NI E+L EIR+ALRKC E L
Sbjct: 1 MISPSVSVRSPASPSPFLGTSLFPHKSFSHSHLPLNHSWNQQKNIPNTFQHHILKCRLAKAKEVASPSLESLTREPHKYFDQAIITVRAGDGGHGATLSMNNQKASPKSQSKQDKEKARIRSSYKRDFDGSLILPMGGHGGDVVIYADEGKDSLLEFHKKTRFNAKRGGNVDTMGVFHSQLRNGLASPTLRIPVPLGTVVKHKRGKFLADLAQHGDEILVARGGQGGISLLEMPGHKKKKMMNMTSNVMTDENDKVLVLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLSAITLAKPDIADYPFTTLMPNLGRLEGDPSLGAGKFSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRMLVHVVDAAAEDPVYDYKTVKEELRMYNPEYLERPYVVVLNKIDIPEAMNKLPFLVEEIQKIGSNESQVQ------------PLSDHEDPANLT---SPEDKKIKEIDEYPRPAAVVGVSVLKHMNIGELLMEIRSALRKCRGSEEAL 495
BLAST of XM_017397187.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1KLV1 ((GTP-binding protein OBGC2 {ECO:0000313|EMBL:PWA37708.1}))
HSP 1 Score: 694.501 bits (1791), Expect = 0.000e+0
Identity = 358/509 (70.33%), Postives = 400/509 (78.59%), Query Frame = 0
Match: A0A2U1KLV1 ((GTP-binding protein OBGC2 {ECO:0000313|EMBL:PWA37708.1}))
HSP 1 Score: 694.501 bits (1791), Expect = 0.000e+0
Identity = 358/509 (70.33%), Postives = 400/509 (78.59%), Query Frame = 0
Query: 4 LVSSSSTPSSSSSLSQFHQTCFLPFLPQRLL---LNSIW-QKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVGVSVLKGTNINEMLKEIRAALRKCSDPNEVL 508
++SSS T S S S F L F P +L LN W Q++ +F T+KCRLA+ K P PS ++L +EPHKYFDQ +TVRAGDGGHGA L T KAPSKS +K DK K K+ SFKRDFDGSLILPMGGHGGD+VIY DE +DTLLEFH K R+ AKRGGNVD M ++T L NG A P+LRIPVP GTVVKHKRGKF ADLAR GDEILVARGGQGGISLLEM HKKKKMM TSNVM DE+DKVL+ GQ GEEVSLQLILRVVADVGLVGLPNAGKSTLL+A TLAKPDIADYPFTTLMPNLGRL+GDPSLGAGK+SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR+LVHVVDAAA+DPV DYRTVKEELRMYNP+YLERP +VVLNKID PEA ++LP L EEI RIGS+E Q +L +D +Q ++S IS + IKEIEEYPRP AVVGVSVLK NI+E+LKEIR+ALR C + E L
Sbjct: 1 MISSSITIRSPPSSSPF-----LGFFPHKLHTFPLNHSWKQRTVPYDFQHHTLKCRLAKAKQPASPSVESLAREPHKYFDQANITVRAGDGGHGATLNASTQKAPSKSLSKEDKAKAWKKGSFKRDFDGSLILPMGGHGGDVVIYADESKDTLLEFHNKGRYVAKRGGNVDTMGVMTGQLRNGLAAPTLRIPVPLGTVVKHKRGKFTADLARHGDEILVARGGQGGISLLEMSGHKKKKMMNQTSNVMTDENDKVLVHGQSGEEVSLQLILRVVADVGLVGLPNAGKSTLLSAITLAKPDIADYPFTTLMPNLGRLEGDPSLGAGKFSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRMLVHVVDAAAEDPVYDYRTVKEELRMYNPEYLERPYVVVLNKIDKPEAMDRLPSLVEEIKRIGSEESPGQPELTFKDPIQDGANS-----------ISNVNKNIKEIEEYPRPAAVVGVSVLKCMNISELLKEIRSALRNCRESEEAL 493
BLAST of XM_017397187.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6N5H4 ((Uncharacterized protein {ECO:0000313|EMBL:KAD4385529.1}))
HSP 1 Score: 692.575 bits (1786), Expect = 0.000e+0
Identity = 342/458 (74.67%), Postives = 391/458 (85.37%), Query Frame = 0
Match: A0A5N6N5H4 ((Uncharacterized protein {ECO:0000313|EMBL:KAD4385529.1}))
HSP 1 Score: 692.575 bits (1786), Expect = 0.000e+0
Identity = 342/458 (74.67%), Postives = 391/458 (85.37%), Query Frame = 0
Query: 52 IKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVGVSVLKGTNINEMLKEIRAALRKCSDPNEVLN 509
+KCRL++ K+ PS ++L +EPHKYFDQ ++TVRAGDGGHGA L+M +PKA SKS K DK K R R S+KRDFDGSLILP+GGHGGD+VIY DEG+D+LLEFHKK RF+AKRGGNVD M +L S L NG A P+LRIPVP GTVVKHKRGKFLADL+ GDEILVARGGQGGISLL+MP+HKKKK+M+MTSNVM DE+DKVL+LGQPGEEVSLQLILRVVADVG+VGLPNAGKSTLL+A TLAKPDIADYPFTTLMPNLGRL+GDPSLGAGK+SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR+LVHVVDAAA+DPV DYRTVKEELRMYNP+YLERP +VVLNKIDIPEA NKLP+L EEI +IGS+E Q S SN N++ IS + ++IKEI+EYPRP AVVGVSVL+G NI+E+L+EIR+ALRKC + E LN
Sbjct: 21 LKCRLSKTKEVASPSLESLNREPHKYFDQAIITVRAGDGGHGATLSMHSPKANSKSQNKQDKEKARIRSSYKRDFDGSLILPVGGHGGDVVIYADEGKDSLLEFHKKGRFNAKRGGNVDTMGVLHSQLRNGLAAPTLRIPVPLGTVVKHKRGKFLADLSNHGDEILVARGGQGGISLLDMPEHKKKKVMSMTSNVMADENDKVLVLGQPGEEVSLQLILRVVADVGVVGLPNAGKSTLLSAITLAKPDIADYPFTTLMPNLGRLEGDPSLGAGKFSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRMLVHVVDAAAEDPVYDYRTVKEELRMYNPEYLERPYVVVLNKIDIPEAMNKLPFLVEEIQKIGSEESLVQ------------SLSNHAGLANVNV-ISHEDKKIKEIDEYPRPAAVVGVSVLRGINISELLREIRSALRKCRESEEALN 465
BLAST of XM_017397187.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103XYK6 ((GTP1/OBG, conserved site-containing protein {ECO:0000313|EMBL:KVH99320.1}))
HSP 1 Score: 691.419 bits (1783), Expect = 0.000e+0
Identity = 350/502 (69.72%), Postives = 406/502 (80.88%), Query Frame = 0
Match: A0A103XYK6 ((GTP1/OBG, conserved site-containing protein {ECO:0000313|EMBL:KVH99320.1}))
HSP 1 Score: 691.419 bits (1783), Expect = 0.000e+0
Identity = 350/502 (69.72%), Postives = 406/502 (80.88%), Query Frame = 0
Query: 19 QFHQTCFLPFLPQRLLLNSIW--QKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPS-LRIPVPP---------GTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVGVSVLKGTNINEMLKEIRAALRKCSDPNEVL 508
Q H + LPQ N W Q++ +F + T KC LA+ KDPP PS ++LI+EPHKYFDQV++TVRAGDGGHGA L+MP PKAPSK +K DK K R R S+KRDFDGSLILPMGGHGGD+VIY DEG+D+LLEFHKK R++AKRGGNVD M +LTS +G+ + +P+ P GTVVKHKRGKFLADLAR GDEILVARGGQGGISL+EMP+HKKKKMM MT+NVMRDE+DKVL++GQ GEEVSLQLILRVVADVGLVGLPNAGKSTLL+A TLAKPDIADYPFTTLMPNLGRL+GDPSLGAGK+SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR+LVHVVDA+ +DPV DYRTVKEELRMYNP+YLERP +VVLNKIDIPEA ++LP+L EEI +IGSD+ Q+ L+ ED +QS +S++ ++IKEIEEYPRP AVVGVSVLK NI+E+LKEIR+ALRKC + E L
Sbjct: 28 QLHTSFVHRLLPQNHSNNHNWNWQRNVPNDFRYPTFKCSLAKAKDPPSPSLESLIREPHKYFDQVIITVRAGDGGHGATLSMPNPKAPSKFQSKEDKVKARIRGSYKRDFDGSLILPMGGHGGDVVIYADEGKDSLLEFHKKGRYNAKRGGNVDTMGVLTSQGRHGNKNDIIMEVPLLPTISLLDILTGTVVKHKRGKFLADLARHGDEILVARGGQGGISLIEMPEHKKKKMMAMTANVMRDENDKVLVIGQHGEEVSLQLILRVVADVGLVGLPNAGKSTLLSAITLAKPDIADYPFTTLMPNLGRLEGDPSLGAGKFSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRMLVHVVDASTEDPVYDYRTVKEELRMYNPEYLERPYLVVLNKIDIPEAMDRLPFLVEEIQKIGSDDLPGQLKLSLEDPVQS---------------VSDEDKKIKEIEEYPRPVAVVGVSVLKCINISELLKEIRSALRKCRESGEAL 514
BLAST of XM_017397187.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A3C4I4 ((Putative GTP-binding protein OBGC2 {ECO:0000313|EMBL:KAE8723694.1}))
HSP 1 Score: 690.263 bits (1780), Expect = 0.000e+0
Identity = 348/510 (68.24%), Postives = 413/510 (80.98%), Query Frame = 0
Match: A0A6A3C4I4 ((Putative GTP-binding protein OBGC2 {ECO:0000313|EMBL:KAE8723694.1}))
HSP 1 Score: 690.263 bits (1780), Expect = 0.000e+0
Identity = 348/510 (68.24%), Postives = 413/510 (80.98%), Query Frame = 0
Query: 1 MLSLVSSSSTPSSSSSLSQFHQTCFLPFLPQRLLLNSIWQKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYD-KGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQS-PSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVGVSVLKGTNINEMLKEIRAALRKCSDPNEVL 508
++SL SS TP + + F P LP + W S + +IK RL + K+ P +P L+KEPHKYFDQV++TVR+GDGGHGAVLTMP + +K KY+ K K++K+ S+KRDFDGSLILP+GGHGGD+VIY DEG+DTLLE H+KSR++AKRGGNVDAM LTS +G A P+LRIPVP GTVVK KRGK LADLA+PGDE+LVARGGQGGISLLEMP+H +KK+M++T+NVMRDE+DKVL+LGQPGEEVSL+LILRVVADVGLVGLPNAGKSTLLAA TLAKPDIADYPFTTLMPNLGRLDGDP+LGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR+LVHVVDA+AD P+NDYRTV+EELRMYNP+YLERP +VVLNKID+PEA +KLP+L EEI++IG D ++++ +S LQ+ P+ S+M +S IS + + K IE+Y RP AVVGVSVLKG +NEMLKEIRAALRKC D NE L
Sbjct: 4 LVSLPSSYLTPRLT-----IDKLFFGPLLPISTSIRRNWDLSKFGNWRLCSIKSRLTKTKESPSTNPTTLLKEPHKYFDQVIITVRSGDGGHGAVLTMPNQQRAAKPQGKYENKEKSKKKPSYKRDFDGSLILPVGGHGGDVVIYADEGKDTLLELHEKSRYNAKRGGNVDAMGALTSQSRDGLAAPTLRIPVPLGTVVKRKRGKLLADLAQPGDEVLVARGGQGGISLLEMPEHGRKKLMSLTTNVMRDETDKVLVLGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLDGDPALGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRVLVHVVDASADYPLNDYRTVREELRMYNPNYLERPYVVVLNKIDLPEARDKLPHLTEEILKIGCDIVHSELETSSRVELQALPTESDM------ASAISGEDKMDKGIEDYHRPAAVVGVSVLKGIQVNEMLKEIRAALRKCRDSNEAL 502
BLAST of XM_017397187.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9IGR3 ((Uncharacterized protein {ECO:0000313|EMBL:SPD23495.1}))
HSP 1 Score: 688.723 bits (1776), Expect = 0.000e+0
Identity = 369/517 (71.37%), Postives = 419/517 (81.04%), Query Frame = 0
Match: A0A2N9IGR3 ((Uncharacterized protein {ECO:0000313|EMBL:SPD23495.1}))
HSP 1 Score: 688.723 bits (1776), Expect = 0.000e+0
Identity = 369/517 (71.37%), Postives = 419/517 (81.04%), Query Frame = 0
Query: 1 MLSLVSSSSTPSSSSSLSQFHQTCFLP--FLPQR------LLLNSIWQKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQS-PSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVGVSVLKGTNINEMLKEIRAALRKCSDPNEVL 508
MLSL+S S PS+ + FH F P+ L+ ++S SE F T+KCRLAR + P SP +IKEPHKYFDQV++TVRAGDGGHGAVL MP +A +KS K+DK KTR++ +KRDFDGSLILPMGGHGGD+VIY DEG+D+LLEFHKK R++AKRGGNVDAM +LTS L NG A P+LRIPVP GTVVK KRGK LADLARPGDEILVARGGQGGISLLEMP++++KK+M +T+NVMRD+SDKVL+LGQPGEEVSL+LILRVVADVGLVGLPNAGKSTLLAA TLAKPDIADYPFTTLMPNLGRL+GDPSLGA YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAA++PVNDY+T ELRMYNP+YLERP IVVLNKID+PEA ++LP L EEIMRIGSDE S++ + S+D LQS P+ D S I K + KEIE+YPRP AVVGVSVLKG INEMLKEIRAALRKC DPNE L
Sbjct: 1 MLSLISLPSLPSNLNL--HFHSNEFFSARIFPESNASRSDLIYRRGRRRSNSENFKCHTVKCRLARANESPSSSPGTVIKEPHKYFDQVIITVRAGDGGHGAVLNMPNQRA-AKSQGKHDKEKTRRKSLYKRDFDGSLILPMGGHGGDVVIYADEGKDSLLEFHKKGRYNAKRGGNVDAMGVLTSQLRNGLASPTLRIPVPLGTVVKRKRGKLLADLARPGDEILVARGGQGGISLLEMPEYRRKKLMALTTNVMRDDSDKVLVLGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLEGDPSLGAEMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAENPVNDYKT---ELRMYNPNYLERPYIVVLNKIDLPEARDRLPSLTEEIMRIGSDEVSSEPETGSDDALQSLPTEGG--HADVSSLGICSKDKMDKEIEDYPRPLAVVGVSVLKGIRINEMLKEIRAALRKCRDPNETL 509
BLAST of XM_017397187.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6R840 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8057182.1}))
HSP 1 Score: 686.026 bits (1769), Expect = 0.000e+0
Identity = 363/518 (70.08%), Postives = 417/518 (80.50%), Query Frame = 0
Match: A0A5N6R840 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8057182.1}))
HSP 1 Score: 686.026 bits (1769), Expect = 0.000e+0
Identity = 363/518 (70.08%), Postives = 417/518 (80.50%), Query Frame = 0
Query: 1 MLSLVSSSSTPS---------SSSSLSQFHQTCFLPFLPQRLLLNSIWQKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQS-PSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVGVSVLKGTNINEMLKEIRAALRKCSDPNEVL 508
MLSL++ S PS + SS F ++C L L+ +S S F F +KCRLA ++ P S D LIKEPHKYFDQ ++TVRAGDGGHGA+L MPTP+A K K+DK KTRK+ +KRDFDGSLILPMGGHGGD+V+YVDEG+D+LLEFHKK R++AKRGGNVDAM +LTS L NG + P+LRIPVP GTVVK KRGK LADLA PGDE+LVARGGQGGISL+++P+H++KK+M +T+NVMRD+SDKVL+LGQPGEEVSL+LILRVVADVGLVGLPNAGKSTLLAA TLAKPDIADYPFTTLMPNLGRL+GDPSLGAG YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAA++PVNDYRTVKEELRMYNPDYLERP IVVLNKID+PE ++LP L EEIMRIGSD S + + ++ D QS PS + D I K ++ KEIE+YP P AVVGVSVLKG INEMLKEIRAALRKC DP+E L
Sbjct: 1 MLSLIAQQSLPSYLNVRSDRNTFSSARIFRESCRSEGL---LIYRHGRIRSNSGNFAFYAVKCRLAGARESPSSSTDTLIKEPHKYFDQAVITVRAGDGGHGAILNMPTPRA-GKPQGKHDKEKTRKKSLYKRDFDGSLILPMGGHGGDVVLYVDEGKDSLLEFHKKGRYNAKRGGNVDAMGVLTSQLHNGFSAPTLRIPVPLGTVVKRKRGKLLADLAHPGDEVLVARGGQGGISLVDLPEHRRKKLMALTTNVMRDDSDKVLVLGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLNGDPSLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAENPVNDYRTVKEELRMYNPDYLERPYIVVLNKIDLPEVVDRLPSLTEEIMRIGSDGVSTEPETSTGDACQSFPSEAG--HADVSYPGIHSKDKKDKEIEDYPCPLAVVGVSVLKGMRINEMLKEIRAALRKCRDPDETL 512
BLAST of XM_017397187.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5EZN1 ((Uroporphyrinogen decarboxylase {ECO:0000313|EMBL:PON90987.1}))
HSP 1 Score: 684.871 bits (1766), Expect = 0.000e+0
Identity = 347/500 (69.40%), Postives = 400/500 (80.00%), Query Frame = 0
Match: A0A2P5EZN1 ((Uroporphyrinogen decarboxylase {ECO:0000313|EMBL:PON90987.1}))
HSP 1 Score: 684.871 bits (1766), Expect = 0.000e+0
Identity = 347/500 (69.40%), Postives = 400/500 (80.00%), Query Frame = 0
Query: 9 STPSSSSSLSQFHQTCFLPFLPQRLLLNSIWQKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVGVSVLKGTNINEMLKEIRAALRKCSDPNEVL 508
S P S+S S H F + + W E + TIKCR+AR K+ P D +I+EPHKYFDQV++TVR+GDGGHGAVL+MP KS K DK T K+ +KRDFDGSLILP GGHGGD+VIY DEG+D+LLEFH KSR++AKRGGNVD+M +L+S L NG + P+LRIPVP GTVVKHKRGK ADLARPGDEILVARGGQGGISLL+MP H KK++MT+T+NVMRD+SDKVL+LGQPG EVSL+LILRVVADVGLVGLPNAGKSTLLAA TLAKPDIADYPFTTLMPNLGRLDGDPSLGA YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR LVHVVDAAA+DPVNDYRTVKEELRMYNP YLERP IVVLNKID+PEA +++P L EEI+RIGS+ + V++ SEDT++ PS E SS + ++ R+ K+IE+YP+P AVVGVSVLKG + EMLKEIRAALR+C D E L
Sbjct: 8 SLPPSTSYYSP-HHAFFSGLIFHKRRNQRSWN---GESIRYYTIKCRVARAKESPSSKTDTVIREPHKYFDQVIITVRSGDGGHGAVLSMPKQGGGGKSQGKRDKENTWKKSPYKRDFDGSLILPTGGHGGDVVIYADEGKDSLLEFHTKSRYNAKRGGNVDSMGVLSSQLRNGLSAPTLRIPVPLGTVVKHKRGKLFADLARPGDEILVARGGQGGISLLDMPQHSKKRVMTLTTNVMRDDSDKVLVLGQPGVEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLDGDPSLGAEMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRALVHVVDAAAEDPVNDYRTVKEELRMYNPSYLERPYIVVLNKIDLPEARDRVPTLTEEILRIGSERTPSDVEICSEDTVK-PSPPEGENAALSSSGVHKEERKDKQIEDYPQPLAVVGVSVLKGIRLKEMLKEIRAALRRCKDSTEPL 502
BLAST of XM_017397187.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P9DUH2 ((probable GTP-binding protein OBGC2 {ECO:0000313|RefSeq:XP_035538924.1}))
HSP 1 Score: 684.485 bits (1765), Expect = 0.000e+0
Identity = 359/507 (70.81%), Postives = 412/507 (81.26%), Query Frame = 0
Match: A0A6P9DUH2 ((probable GTP-binding protein OBGC2 {ECO:0000313|RefSeq:XP_035538924.1}))
HSP 1 Score: 684.485 bits (1765), Expect = 0.000e+0
Identity = 359/507 (70.81%), Postives = 412/507 (81.26%), Query Frame = 0
Query: 9 STPSSSSSLS-QFHQTCFLP--FLPQR----LLLNSIWQKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVGVSVLKGTNINEMLKEIRAALRKCSDPNEVL 508
S PSS S LS + H F +R L+ KS S+ + T+KC++ARV + P SP LI EPHKYFDQ ++TVRAGDGGHGA+L MP +A KS K++K KTR++ +KRDFDGSLILPMGGHGGD+VIY DEG+DTLLEFHKK R++AKRGGNVDAM +LTS L NG A P+LRIPVP GTVVK KRGK LADL+ PGDE+LVARGGQGGISL+EMP+H++KK+M +T+NVMRD+SDKVL+LGQPGEEVSL+LILR+VADVGLVGLPNAGKSTLLAA TLAKPDIADYPFTTLMPNLGRLDGDPSLGA YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAA D+PVNDYRTVKEELRMYNPDYLERP IVVLNKID+PEA ++L L E+IMRIGSD S++ +++S++ LQ SS D S I K + KEIE+YPRP AVVGVSVLKG INEMLKEIRAAL+KC DP+E L
Sbjct: 6 SAPSSPSYLSVRLHNNTFFSARVFSERSRGLLIYRRSQHKSNSKNCAYYTVKCQIARVNEGPSSSPATLINEPHKYFDQAIITVRAGDGGHGAILNMPNQRA-GKSQGKHEKEKTRRKSLYKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFHKKGRYNAKRGGNVDAMGVLTSQLHNGLAAPTLRIPVPVGTVVKRKRGKLLADLSHPGDEVLVARGGQGGISLVEMPEHRRKKLMALTTNVMRDDSDKVLVLGQPGEEVSLELILRIVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLDGDPSLGARMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAATDNPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLSSLTEKIMRIGSDGASSKPEMSSDNVLQL-LSSEAPHADVSSPGIQSKDEKEKEIEDYPRPLAVVGVSVLKGVRINEMLKEIRAALKKCRDPDEAL 510
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BXS2 | E-Value: 0.000e+0, PID: 76.35 | (Putative GTP-binding protein OBGC2 isoform X1 {EC... [more] |
| A0A251UQJ0 | E-Value: 0.000e+0, PID: 70.20 | (Putative GTP-binding protein OBGC2 {ECO:0000313|E... [more] |
| A0A2U1KLV1 | E-Value: 0.000e+0, PID: 70.33 | (GTP-binding protein OBGC2 {ECO:0000313|EMBL:PWA37... [more] |
| A0A5N6N5H4 | E-Value: 0.000e+0, PID: 74.67 | (Uncharacterized protein {ECO:0000313|EMBL:KAD4385... [more] |
| A0A103XYK6 | E-Value: 0.000e+0, PID: 69.72 | (GTP1/OBG, conserved site-containing protein {ECO:... [more] |
| A0A6A3C4I4 | E-Value: 0.000e+0, PID: 68.24 | (Putative GTP-binding protein OBGC2 {ECO:0000313|E... [more] |
| A0A2N9IGR3 | E-Value: 0.000e+0, PID: 71.37 | (Uncharacterized protein {ECO:0000313|EMBL:SPD2349... [more] |
| A0A5N6R840 | E-Value: 0.000e+0, PID: 70.08 | (Uncharacterized protein {ECO:0000313|EMBL:KAE8057... [more] |
| A0A2P5EZN1 | E-Value: 0.000e+0, PID: 69.40 | (Uroporphyrinogen decarboxylase {ECO:0000313|EMBL:... [more] |
| A0A6P9DUH2 | E-Value: 0.000e+0, PID: 70.81 | (probable GTP-binding protein OBGC2 {ECO:0000313|R... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |