Resource Type:
Polypeptide
Name:
XM_017397188.1
Identifier:
XM_017397188.1-protein
Sequence:
MLSLVSSSSTPSSSSSLSQFHQTCFLPFLPQRLLLNSSIWQKSPSEEFHF
STIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMP
TPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGR
DTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVK
HKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRD
ESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPD
IADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLG
RNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVV
LNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQ
KDNLSSEISEKARRIKEIEEYPRPNAVVGKRN
Sequence Length:
482
Sequence Checksum:
97aab94cfcae2d7da4d044b4fd3dcd5b
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017397188.1, derives from mRNA, XM_017397188.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017397188.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017397188.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BXS2 ((Putative GTP-binding protein OBGC2 isoform X1 {ECO:0000313|EMBL:MPA73465.1}) (3.6.5.- {ECO:0000313|EMBL:MPA73465.1}))
HSP 1 Score: 674.855 bits (1740), Expect = 0.000e+0
Identity = 346/452 (76.55%), Postives = 389/452 (86.06%), Query Frame = 0
Match: A0A5B7BXS2 ((Putative GTP-binding protein OBGC2 isoform X1 {ECO:0000313|EMBL:MPA73465.1}) (3.6.5.- {ECO:0000313|EMBL:MPA73465.1}))
HSP 1 Score: 674.855 bits (1740), Expect = 0.000e+0
Identity = 346/452 (76.55%), Postives = 389/452 (86.06%), Query Frame = 0
Query: 28 FLPQRLLLNSSIWQKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVG 479
F RLL S Q+S SE F +S +KCRLAR K PP P PD LI+EPHKYFDQV++TVR+GDGGHGA+L+MP +AP KS ++DK KTRK+ KRDFDGSLILPMGGHG D+VIY DEG+DTLLEFHKKSR++AKRGGNVDAM +LTS L +G A P+LRIPVP GTVVKHKRGKFLADLA PGDEILVARGGQGGISLLEMP+H +KK+M +T+NVMRD+SDKVL+LGQPGEEVSL+LILRVVADVGLVGLPNAGKSTLLAA TLA+PDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAA++PVNDYRTVKEELRMYNPDYLERP IVVLNKIDIPEA ++LP L +EI+RIGS+E +Q + D +QS + + E LSS S+K RR+KEIEEYP P AVVG
Sbjct: 33 FFSGRLLPKSFSQQRSSSENFQYSILKCRLARAKKPPSPCPDTLIREPHKYFDQVIITVRSGDGGHGAILSMPNQRAPPKSEGRHDKPKTRKKSLGKRDFDGSLILPMGGHGADVVIYADEGKDTLLEFHKKSRYNAKRGGNVDAMGVLTSQLHDGFAAPTLRIPVPVGTVVKHKRGKFLADLANPGDEILVARGGQGGISLLEMPEHMRKKIMALTTNVMRDDSDKVLVLGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLARPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAENPVNDYRTVKEELRMYNPDYLERPYIVVLNKIDIPEARDRLPSLTQEILRIGSNEVPSQPETRFGDAVQSLPAED-ELASVLSSGASDKDRRVKEIEEYPCPLAVVG 483
BLAST of XM_017397188.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251UQJ0 ((Putative GTP-binding protein OBGC2 {ECO:0000313|EMBL:OTG25605.1}))
HSP 1 Score: 659.062 bits (1699), Expect = 0.000e+0
Identity = 340/481 (70.69%), Postives = 383/481 (79.63%), Query Frame = 0
Match: A0A251UQJ0 ((Putative GTP-binding protein OBGC2 {ECO:0000313|EMBL:OTG25605.1}))
HSP 1 Score: 659.062 bits (1699), Expect = 0.000e+0
Identity = 340/481 (70.69%), Postives = 383/481 (79.63%), Query Frame = 0
Query: 4 LVSSSSTPSSSSSLSQFHQTCFLP---FLPQRLLLNSSIW--QKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVG 479
++S S + S +S S F T P F L LN S W QK+ F +KCRLA+ K+ PS ++L +EPHKYFDQ ++TVRAGDGGHGA L+M KA KS +K DK K R R S+KRDFDGSLILPMGGHGGD+VIY DEG+D+LLEFHKK+RF+AKRGGNVD M + S L NG A P+LRIPVP GTVVKHKRGKFLADLA+ GDEILVARGGQGGISLLEMP HKKKKMM MTSNVM DE+DKVL+LGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLL+A TLAKPDIADYPFTTLMPNLGRL+GDPSLGAGK+SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR+LVHVVDAAA+DPV DY+TVKEELRMYNP+YLERP +VVLNKIDIPEA NKLP+L EEI +IGS+E Q S+ E NL+ S + ++IKEI+EYPRP AVVG
Sbjct: 1 MISPSVSVRSPASPSPFLGTSLFPHKSFSHSHLPLNHS-WNQQKNIPNTFQHHILKCRLAKAKEVASPSLESLTREPHKYFDQAIITVRAGDGGHGATLSMNNQKASPKSQSKQDKEKARIRSSYKRDFDGSLILPMGGHGGDVVIYADEGKDSLLEFHKKTRFNAKRGGNVDTMGVFHSQLRNGLASPTLRIPVPLGTVVKHKRGKFLADLAQHGDEILVARGGQGGISLLEMPGHKKKKMMNMTSNVMTDENDKVLVLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLSAITLAKPDIADYPFTTLMPNLGRLEGDPSLGAGKFSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRMLVHVVDAAAEDPVYDYKTVKEELRMYNPEYLERPYVVVLNKIDIPEAMNKLPFLVEEIQKIGSNESQVQ------------PLSDHEDPANLT---SPEDKKIKEIDEYPRPAAVVG 465
BLAST of XM_017397188.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1KLV1 ((GTP-binding protein OBGC2 {ECO:0000313|EMBL:PWA37708.1}))
HSP 1 Score: 656.751 bits (1693), Expect = 0.000e+0
Identity = 339/479 (70.77%), Postives = 377/479 (78.71%), Query Frame = 0
Match: A0A2U1KLV1 ((GTP-binding protein OBGC2 {ECO:0000313|EMBL:PWA37708.1}))
HSP 1 Score: 656.751 bits (1693), Expect = 0.000e+0
Identity = 339/479 (70.77%), Postives = 377/479 (78.71%), Query Frame = 0
Query: 4 LVSSSSTPSSSSSLSQFHQTCFLPFLPQRLL---LNSSIWQKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVG 479
++SSS T S S S F L F P +L LN S Q++ +F T+KCRLA+ K P PS ++L +EPHKYFDQ +TVRAGDGGHGA L T KAPSKS +K DK K K+ SFKRDFDGSLILPMGGHGGD+VIY DE +DTLLEFH K R+ AKRGGNVD M ++T L NG A P+LRIPVP GTVVKHKRGKF ADLAR GDEILVARGGQGGISLLEM HKKKKMM TSNVM DE+DKVL+ GQ GEEVSLQLILRVVADVGLVGLPNAGKSTLL+A TLAKPDIADYPFTTLMPNLGRL+GDPSLGAGK+SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR+LVHVVDAAA+DPV DYRTVKEELRMYNP+YLERP +VVLNKID PEA ++LP L EEI RIGS+E Q +L +D +Q ++S IS + IKEIEEYPRP AVVG
Sbjct: 1 MISSSITIRSPPSSSPF-----LGFFPHKLHTFPLNHSWKQRTVPYDFQHHTLKCRLAKAKQPASPSVESLAREPHKYFDQANITVRAGDGGHGATLNASTQKAPSKSLSKEDKAKAWKKGSFKRDFDGSLILPMGGHGGDVVIYADESKDTLLEFHNKGRYVAKRGGNVDTMGVMTGQLRNGLAAPTLRIPVPLGTVVKHKRGKFTADLARHGDEILVARGGQGGISLLEMSGHKKKKMMNQTSNVMTDENDKVLVHGQSGEEVSLQLILRVVADVGLVGLPNAGKSTLLSAITLAKPDIADYPFTTLMPNLGRLEGDPSLGAGKFSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRMLVHVVDAAAEDPVYDYRTVKEELRMYNPEYLERPYVVVLNKIDKPEAMDRLPSLVEEIKRIGSEESPGQPELTFKDPIQDGANS-----------ISNVNKNIKEIEEYPRPAAVVG 463
BLAST of XM_017397188.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103XYK6 ((GTP1/OBG, conserved site-containing protein {ECO:0000313|EMBL:KVH99320.1}))
HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0
Identity = 329/472 (69.70%), Postives = 382/472 (80.93%), Query Frame = 0
Match: A0A103XYK6 ((GTP1/OBG, conserved site-containing protein {ECO:0000313|EMBL:KVH99320.1}))
HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0
Identity = 329/472 (69.70%), Postives = 382/472 (80.93%), Query Frame = 0
Query: 19 QFHQTCFLPFLPQRLLLNSSIW-QKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPS-LRIPVPP---------GTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVG 479
Q H + LPQ N + Q++ +F + T KC LA+ KDPP PS ++LI+EPHKYFDQV++TVRAGDGGHGA L+MP PKAPSK +K DK K R R S+KRDFDGSLILPMGGHGGD+VIY DEG+D+LLEFHKK R++AKRGGNVD M +LTS +G+ + +P+ P GTVVKHKRGKFLADLAR GDEILVARGGQGGISL+EMP+HKKKKMM MT+NVMRDE+DKVL++GQ GEEVSLQLILRVVADVGLVGLPNAGKSTLL+A TLAKPDIADYPFTTLMPNLGRL+GDPSLGAGK+SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR+LVHVVDA+ +DPV DYRTVKEELRMYNP+YLERP +VVLNKIDIPEA ++LP+L EEI +IGSD+ Q+ L+ ED +QS +S++ ++IKEIEEYPRP AVVG
Sbjct: 28 QLHTSFVHRLLPQNHSNNHNWNWQRNVPNDFRYPTFKCSLAKAKDPPSPSLESLIREPHKYFDQVIITVRAGDGGHGATLSMPNPKAPSKFQSKEDKVKARIRGSYKRDFDGSLILPMGGHGGDVVIYADEGKDSLLEFHKKGRYNAKRGGNVDTMGVLTSQGRHGNKNDIIMEVPLLPTISLLDILTGTVVKHKRGKFLADLARHGDEILVARGGQGGISLIEMPEHKKKKMMAMTANVMRDENDKVLVIGQHGEEVSLQLILRVVADVGLVGLPNAGKSTLLSAITLAKPDIADYPFTTLMPNLGRLEGDPSLGAGKFSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRMLVHVVDASTEDPVYDYRTVKEELRMYNPEYLERPYLVVLNKIDIPEAMDRLPFLVEEIQKIGSDDLPGQLKLSLEDPVQS---------------VSDEDKKIKEIEEYPRPVAVVG 484
BLAST of XM_017397188.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7VZ77 ((probable GTP-binding protein OBGC2 {ECO:0000313|RefSeq:XP_009767689.1}))
HSP 1 Score: 650.973 bits (1678), Expect = 0.000e+0
Identity = 333/466 (71.46%), Postives = 387/466 (83.05%), Query Frame = 0
Match: A0A1U7VZ77 ((probable GTP-binding protein OBGC2 {ECO:0000313|RefSeq:XP_009767689.1}))
HSP 1 Score: 650.973 bits (1678), Expect = 0.000e+0
Identity = 333/466 (71.46%), Postives = 387/466 (83.05%), Query Frame = 0
Query: 14 SSSLSQFHQTCFLPFLPQRLLLNSSIWQKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVG 479
++ LS F P LPQ S W + E + T+KC LA+ + PP P+ D I+EPHKYFD+V++TVRAGDGGHGAVL+MP KAPSKS K+D+ KT+++ S+KRDFDGSLILPMGGHGGD+VIY DEG+DTLLEFH KS+ AKRGGNVDAM +LTS+L NG A P+LRIPVP GTVVKHKRGKFLADLA PGDE+LVARGGQGGISLLE+P+HKKK+M T+T+N+MRD+SDKVL +GQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAA T AKPDIADYPFTTLMPNLGRLDGDPSLGA KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAA++DPV+DYRTVKEELRMYNP+YL+RP +VVLNKID PEA ++LP L EEI RIG + S++ D +S T+ S + Q +SS +S K +++KE+EEYPRP AVVG
Sbjct: 19 TTDLSLSFSATFSPPLPQFQKSASRKWNSN--ENYRSYTVKCALAKARTPPSPTSDAFIREPHKYFDEVVITVRAGDGGHGAVLSMPNIKAPSKSQGKFDREKTKRKPSYKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKSKHKAKRGGNVDAMGVLTSYLQNGLAAPTLRIPVPLGTVVKHKRGKFLADLANPGDEVLVARGGQGGISLLEVPEHKKKQMTTLTTNMMRDDSDKVLAIGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPSLGADKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAASEDPVSDYRTVKEELRMYNPEYLDRPYLVVLNKIDKPEAVDRLPTLTEEIWRIGCERISSEPDASS-GTVAESFSVDGSQNSEISSGLSAKDQKVKELEEYPRPLAVVG 481
BLAST of XM_017397188.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4CX69 ((probable GTP-binding protein OBGC2 {ECO:0000313|RefSeq:XP_016505732.1}))
HSP 1 Score: 650.973 bits (1678), Expect = 0.000e+0
Identity = 333/466 (71.46%), Postives = 387/466 (83.05%), Query Frame = 0
Match: A0A1S4CX69 ((probable GTP-binding protein OBGC2 {ECO:0000313|RefSeq:XP_016505732.1}))
HSP 1 Score: 650.973 bits (1678), Expect = 0.000e+0
Identity = 333/466 (71.46%), Postives = 387/466 (83.05%), Query Frame = 0
Query: 14 SSSLSQFHQTCFLPFLPQRLLLNSSIWQKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVG 479
++ LS F P LPQ S W + E + T+KC LA+ + PP P+ D I+EPHKYFD+V++TVRAGDGGHGAVL+MP KAPSKS K+D+ KT+++ S+KRDFDGSLILPMGGHGGD+VIY DEG+DTLLEFH KS+ AKRGGNVDAM +LTS+L NG A P+LRIPVP GTVVKHKRGKFLADLA PGDE+LVARGGQGGISLLE+P+HKKK+M T+T+N+MRD+SDKVL +GQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAA T AKPDIADYPFTTLMPNLGRLDGDPSLGA KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAA++DPV+DYRTVKEELRMYNP+YL+RP +VVLNKID PEA ++LP L EEI RIG + S++ D +S T+ S + Q +SS +S K +++KE+EEYPRP AVVG
Sbjct: 19 TTDLSLSFSATFSPPLPQFQKSASRKWNSN--ENYRSYTVKCALAKARTPPSPTSDAFIREPHKYFDEVVITVRAGDGGHGAVLSMPNIKAPSKSQGKFDREKTKRKPSYKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKSKHKAKRGGNVDAMGVLTSYLQNGLAAPTLRIPVPLGTVVKHKRGKFLADLANPGDEVLVARGGQGGISLLEVPEHKKKQMTTLTTNMMRDDSDKVLAIGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPSLGADKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAASEDPVSDYRTVKEELRMYNPEYLDRPYLVVLNKIDKPEAVDRLPTLTEEIWRIGCERISSEPDASS-GTVAESFSVDGSQNSEISSGLSAKDQKVKELEEYPRPLAVVG 481
BLAST of XM_017397188.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6N5H4 ((Uncharacterized protein {ECO:0000313|EMBL:KAD4385529.1}))
HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 322/427 (75.41%), Postives = 365/427 (85.48%), Query Frame = 0
Match: A0A5N6N5H4 ((Uncharacterized protein {ECO:0000313|EMBL:KAD4385529.1}))
HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 322/427 (75.41%), Postives = 365/427 (85.48%), Query Frame = 0
Query: 53 IKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVG 479
+KCRL++ K+ PS ++L +EPHKYFDQ ++TVRAGDGGHGA L+M +PKA SKS K DK K R R S+KRDFDGSLILP+GGHGGD+VIY DEG+D+LLEFHKK RF+AKRGGNVD M +L S L NG A P+LRIPVP GTVVKHKRGKFLADL+ GDEILVARGGQGGISLL+MP+HKKKK+M+MTSNVM DE+DKVL+LGQPGEEVSLQLILRVVADVG+VGLPNAGKSTLL+A TLAKPDIADYPFTTLMPNLGRL+GDPSLGAGK+SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR+LVHVVDAAA+DPV DYRTVKEELRMYNP+YLERP +VVLNKIDIPEA NKLP+L EEI +IGS+E Q S SN N++ IS + ++IKEI+EYPRP AVVG
Sbjct: 21 LKCRLSKTKEVASPSLESLNREPHKYFDQAIITVRAGDGGHGATLSMHSPKANSKSQNKQDKEKARIRSSYKRDFDGSLILPVGGHGGDVVIYADEGKDSLLEFHKKGRFNAKRGGNVDTMGVLHSQLRNGLAAPTLRIPVPLGTVVKHKRGKFLADLSNHGDEILVARGGQGGISLLDMPEHKKKKVMSMTSNVMADENDKVLVLGQPGEEVSLQLILRVVADVGVVGLPNAGKSTLLSAITLAKPDIADYPFTTLMPNLGRLEGDPSLGAGKFSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRMLVHVVDAAAEDPVYDYRTVKEELRMYNPEYLERPYVVVLNKIDIPEAMNKLPFLVEEIQKIGSEESLVQ------------SLSNHAGLANVNV-ISHEDKKIKEIDEYPRPAAVVG 434
BLAST of XM_017397188.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5EZN1 ((Uroporphyrinogen decarboxylase {ECO:0000313|EMBL:PON90987.1}))
HSP 1 Score: 645.58 bits (1664), Expect = 0.000e+0
Identity = 328/471 (69.64%), Postives = 377/471 (80.04%), Query Frame = 0
Match: A0A2P5EZN1 ((Uroporphyrinogen decarboxylase {ECO:0000313|EMBL:PON90987.1}))
HSP 1 Score: 645.58 bits (1664), Expect = 0.000e+0
Identity = 328/471 (69.64%), Postives = 377/471 (80.04%), Query Frame = 0
Query: 9 STPSSSSSLSQFHQTCFLPFLPQRLLLNSSIWQKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVG 479
S P S+S S H F L N W E + TIKCR+AR K+ P D +I+EPHKYFDQV++TVR+GDGGHGAVL+MP KS K DK T K+ +KRDFDGSLILP GGHGGD+VIY DEG+D+LLEFH KSR++AKRGGNVD+M +L+S L NG + P+LRIPVP GTVVKHKRGK ADLARPGDEILVARGGQGGISLL+MP H KK++MT+T+NVMRD+SDKVL+LGQPG EVSL+LILRVVADVGLVGLPNAGKSTLLAA TLAKPDIADYPFTTLMPNLGRLDGDPSLGA YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR LVHVVDAAA+DPVNDYRTVKEELRMYNP YLERP IVVLNKID+PEA +++P L EEI+RIGS+ + V++ SEDT++ PS E SS + ++ R+ K+IE+YP+P AVVG
Sbjct: 8 SLPPSTSYYSPHH--AFFSGLIFHKRRNQRSWN---GESIRYYTIKCRVARAKESPSSKTDTVIREPHKYFDQVIITVRSGDGGHGAVLSMPKQGGGGKSQGKRDKENTWKKSPYKRDFDGSLILPTGGHGGDVVIYADEGKDSLLEFHTKSRYNAKRGGNVDSMGVLSSQLRNGLSAPTLRIPVPLGTVVKHKRGKLFADLARPGDEILVARGGQGGISLLDMPQHSKKRVMTLTTNVMRDDSDKVLVLGQPGVEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLDGDPSLGAEMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRALVHVVDAAAEDPVNDYRTVKEELRMYNPSYLERPYIVVLNKIDLPEARDRVPTLTEEILRIGSERTPSDVEICSEDTVK-PSPPEGENAALSSSGVHKEERKDKQIEDYPQPLAVVG 472
BLAST of XM_017397188.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834ZMJ6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8410534.1}))
HSP 1 Score: 642.499 bits (1656), Expect = 0.000e+0
Identity = 338/480 (70.42%), Postives = 394/480 (82.08%), Query Frame = 0
Match: A0A834ZMJ6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8410534.1}))
HSP 1 Score: 642.499 bits (1656), Expect = 0.000e+0
Identity = 338/480 (70.42%), Postives = 394/480 (82.08%), Query Frame = 0
Query: 10 TPSSSSSLSQFHQTCFLPFLPQRLLLNSSI-WQKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIP--------EAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQKDNLSSEIS-EKARRIKEIEEYPRPNAVVG 479
+PS SS S+F P RLLL WQ+S E + + CRL+RVK+ +P LI+EPHKYFDQV++TVR+GDGGHGA+L+MPT +APSK K++K K RK+ +KRDFDGSLILPMGGHGGD+V+Y DE +D+LLEFHKKSR +AKRGGNVDAM +LTS L +G A P+LRIPVP GTVVK KRGKFLADLARPGDEILVARGGQGGISLLEMP++K+KK+M +T+NVMRD+ DKVL+LGQPGEEVSL+LILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTL+PNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAA++PV DYRTVKEELRMYNPDYLERP IVVLNKID+P EA ++LPYL EI IG +E ++ +++SE+ +QS S + + N+ S +S K R+ KEIE+YPRP AVVG
Sbjct: 7 SPSWSSLKSRFLGDQSTPLYSTRLLLPKRFNWQRSHFENTEYCKLNCRLSRVKESLSSNPATLIREPHKYFDQVIITVRSGDGGHGAILSMPTQQAPSKFQGKHEKEKIRKKSLYKRDFDGSLILPMGGHGGDVVLYADESKDSLLEFHKKSRHNAKRGGNVDAMGVLTSQLRDGFATPTLRIPVPVGTVVKRKRGKFLADLARPGDEILVARGGQGGISLLEMPEYKRKKLMALTTNVMRDDDDKVLVLGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLIPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAENPVKDYRTVKEELRMYNPDYLERPYIVVLNKIDLPEIHICWRFEARDRLPYLAREISSIGCNEVPSEPEMDSEEAVQSLSIES--EHGNMPSLVSPNKDRKEKEIEDYPRPLAVVG 484
BLAST of XM_017397188.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6UPX2 ((probable GTP-binding protein OBGC2 {ECO:0000313|RefSeq:XP_027092543.1}))
HSP 1 Score: 642.114 bits (1655), Expect = 0.000e+0
Identity = 329/477 (68.97%), Postives = 379/477 (79.45%), Query Frame = 0
Match: A0A6P6UPX2 ((probable GTP-binding protein OBGC2 {ECO:0000313|RefSeq:XP_027092543.1}))
HSP 1 Score: 642.114 bits (1655), Expect = 0.000e+0
Identity = 329/477 (68.97%), Postives = 379/477 (79.45%), Query Frame = 0
Query: 3 SLVSSSSTPSSSSSLSQFHQTCFLPFLPQRLLLNSSIWQKSPSEEFHFSTIKCRLARVKDPPPPSPDNLIKEPHKYFDQVMVTVRAGDGGHGAVLTMPTPKAPSKSHTKYDKGKTRKRVSFKRDFDGSLILPMGGHGGDIVIYVDEGRDTLLEFHKKSRFSAKRGGNVDAMSILTSHLSNGSAGPSLRIPVPPGTVVKHKRGKFLADLARPGDEILVARGGQGGISLLEMPDHKKKKMMTMTSNVMRDESDKVLLLGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLAATTLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAADDPVNDYRTVKEELRMYNPDYLERPSIVVLNKIDIPEAFNKLPYLKEEIMRIGSDEPSAQVDLNSEDTLQSPSSSNMEQKDNLSSEISEKARRIKEIEEYPRPNAVVG 479
SL +S + + S+S F LP+ ++ +S +KC +A K+ PS + LI+EPHKYFDQV++TVRAGDGGHGA+L+MP K P KS K+DK K RK+ S+KRDFDGSLILP+GG GGD+VIYVDE +DTLLEFH+KS F AKRGGNVDAMS+LTS L +G P LRIPVPPGTVVKHK+GKFLADLA PGD++LVARGGQGGISLLEMP+H+KKKMM +T+NVMRDESDKVL+ GQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLA+ TLAKPDIADYPFTTL PNLGRLDGDPSLGA +YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR+LVHVVDAA++DPV DYRTVKEELRMYNP+YLERP IVVLNKIDIPEA +LP L EEI IGSD +A +QS + E+ D LS EI +K ++IK +E+YP P AVVG
Sbjct: 11 SLNLNSRSNEAWLSISAFFSQRPLPY---------CLYNRSRFRNARGRGLKCAVAIKKELALPSEETLIREPHKYFDQVIITVRAGDGGHGAILSMPNQKPPPKSKGKFDKDKNRKKSSYKRDFDGSLILPVGGRGGDVVIYVDESKDTLLEFHRKSSFKAKRGGNVDAMSVLTSLLHDGLNAPDLRIPVPPGTVVKHKKGKFLADLANPGDQVLVARGGQGGISLLEMPEHRKKKMMFLTTNVMRDESDKVLVFGQPGEEVSLQLILRVVADVGLVGLPNAGKSTLLASITLAKPDIADYPFTTLKPNLGRLDGDPSLGAQQYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRVLVHVVDAASEDPVADYRTVKEELRMYNPEYLERPYIVVLNKIDIPEAMERLPSLAEEIKSIGSDTGTA---------VQS-VCDDGEKADGLSLEIPDKEQKIKGVEDYPPPLAVVG 468
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BXS2 | E-Value: 0.000e+0, PID: 76.55 | (Putative GTP-binding protein OBGC2 isoform X1 {EC... [more] |
| A0A251UQJ0 | E-Value: 0.000e+0, PID: 70.69 | (Putative GTP-binding protein OBGC2 {ECO:0000313|E... [more] |
| A0A2U1KLV1 | E-Value: 0.000e+0, PID: 70.77 | (GTP-binding protein OBGC2 {ECO:0000313|EMBL:PWA37... [more] |
| A0A103XYK6 | E-Value: 0.000e+0, PID: 69.70 | (GTP1/OBG, conserved site-containing protein {ECO:... [more] |
| A0A1U7VZ77 | E-Value: 0.000e+0, PID: 71.46 | (probable GTP-binding protein OBGC2 {ECO:0000313|R... [more] |
| A0A1S4CX69 | E-Value: 0.000e+0, PID: 71.46 | (probable GTP-binding protein OBGC2 {ECO:0000313|R... [more] |
| A0A5N6N5H4 | E-Value: 0.000e+0, PID: 75.41 | (Uncharacterized protein {ECO:0000313|EMBL:KAD4385... [more] |
| A0A2P5EZN1 | E-Value: 0.000e+0, PID: 69.64 | (Uroporphyrinogen decarboxylase {ECO:0000313|EMBL:... [more] |
| A0A834ZMJ6 | E-Value: 0.000e+0, PID: 70.42 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8410... [more] |
| A0A6P6UPX2 | E-Value: 0.000e+0, PID: 68.97 | (probable GTP-binding protein OBGC2 {ECO:0000313|R... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |