Resource Type:
Polypeptide
Name:
XM_017393514.1
Identifier:
XM_017393514.1-protein
Sequence:
MGSITRYPALCILPVHCILFLHHFYLFIYSYHFYILHLPFYFSALHLNLT
PSLYPSTELHIHTHTSNTIENSCSKFEFWHLGFVQNCFFLGGSALVSFNS
LAFVFVCGVLVVSIGCILNCEILVMEGNGMPNGMFSGINSGMLGLEMSPQ
QYQHLQAQQNPQNPQNPNLSQQHPHTHHTMVSFGQNEVDHHHTQNQQAVK
QGYPYGAKPRTQQLTFSDDDEAGVGAEDSGGKRNASPWQRMKWTDGMVKL
LIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERG
FFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPK
MKEEVRKLLNSKHLFFREMCAYHTSCNGGAQHSAEAGADSSHVQQQQQQQ
QRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGVSVEEEDDDEDDNDDEDED
NDEVEGGARGHEHESDLDVKITSHKRTRNETYAPDSNSFQEFNNELKYVI
QDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKE
RDMEAERLANERMRLQNERMVLILRQKELELLDSQQQHQSCNRSSMAG
Sequence Length:
598
Sequence Checksum:
abd26e370c2c09e80403216dcbff889b
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017393514.1, derives from mRNA, XM_017393514.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017393514.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017393514.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BZJ5 ((Putative stress response protein NST1 {ECO:0000313|EMBL:MPA74329.1}))
HSP 1 Score: 485.337 bits (1248), Expect = 9.331e-165
Identity = 292/483 (60.46%), Postives = 352/483 (72.88%), Query Frame = 0
Match: A0A5B7BZJ5 ((Putative stress response protein NST1 {ECO:0000313|EMBL:MPA74329.1}))
HSP 1 Score: 485.337 bits (1248), Expect = 9.331e-165
Identity = 292/483 (60.46%), Postives = 352/483 (72.88%), Query Frame = 0
Query: 125 MEGNGMPNGMFSGINSGMLGLEMS-PQQYQHLQAQQNPQNPQNPNLSQQHPHTHHTMVSFGQNEVDHHHT----QNQQAVKQGYPYGAKPRTQQLTFSDDDEAGVGAEDSGG--KRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSC--------NGGAQHSAEAGADSSHVQQQQQQQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGVSVEEEDDDEDDNDDEDEDNDE---VEGGARGHE--HESDLDVKITSHKRTRN----ETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLD 583
ME NG+ MFS ++SGMLGLEMS Q QNP++ L QQHPH + ++G + HH Q Q++KQGYPY K + QQLT SD+DE G+ AEDS G K+ SPWQRMKWTD MV+LLIM+VFYIGD+ G SEG+D AG+KKGGG LQKKGKWKSVS+AMMERGF+VSPQQCEDKFNDLNKRYKRVNDILGKGT+C+VVENQSLL+TMDHLSPKMKEEV+KLLNSKHLFFREMCAYH SC GA HS E A+ S +QQQ QQQ +C HSS+++P N GR + EG KM+KG S EEE++D+D++DD+D+D +E VEG R HE HE D D + TS KR R + S Q+ + EL V+QDGTKSSWEKRQWM+ +L+QLEE + +QC AFELEKQ++KW+KF KKER+ME E+L N+RMRL+NERMVL+LRQKE ELLD
Sbjct: 1 MEANGLSGEMFSSMSSGMLGLEMSLHPHQQPPPPPPQQQNPRH--LQQQHPHPQ-MVAAYGHHHEADHHHNHHPQTLQSMKQGYPYATKAKPQQLTLSDEDEPGLTAEDSAGDGKKKISPWQRMKWTDSMVRLLIMVVFYIGDEAG-SEGSDHAGKKKGGG---VLQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLLETMDHLSPKMKEEVKKLLNSKHLFFREMCAYHNSCGGGGGGGGTSGAHHSPEVAAEPSQIQQQSQQQ---SCFHSSESAPIGANSGRAELEGLKMVKGGSGEEEEEDDDEDDDDDDDENEDEVVEGDGRVHEHGHEEDDDDEKTSRKRPRKGGAFSSSLSSSPLIQQLSGELMSVVQDGTKSSWEKRQWMKKQLIQLEEQGVSYQCNAFELEKQRLKWVKFSSKKEREMEREKLKNQRMRLENERMVLLLRQKEFELLD 473
BLAST of XM_017393514.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GJ30 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 483.411 bits (1243), Expect = 4.256e-164
Identity = 285/489 (58.28%), Postives = 343/489 (70.14%), Query Frame = 0
Match: A0A7J7GJ30 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 483.411 bits (1243), Expect = 4.256e-164
Identity = 285/489 (58.28%), Postives = 343/489 (70.14%), Query Frame = 0
Query: 134 MFSGINSGMLGLEMSPQQYQHLQAQQNPQNPQNPNLSQQHPHTHHTMVSFGQNEVDHH-HTQNQQAVKQGYPYGAKPRTQQLTFSDDDEAGVGAEDSGG---KRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSC-----------------NGGAQHSAEAGADSSHVQQQQQQQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGVSVEEEDDDEDDNDDEDEDNDE----VEGGARGHEHESDLDVKIT-SHKRTRNETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLDSQQQHQ-SCNRSS 595
M+S + SGMLGLEMS H QQNPQNP QQHPH +VS+G +E DHH H Q QQ+VK YP+ KP+ QQLT SD+DE G+ EDS G K+ SPWQRMKWTD MVKLLIM+VFYIGD+ G S+GN EKK GGG LQKKGKWKSVS+AMMERGF VSPQQCEDKFNDLNKRYKRVNDILGKGT+C+VVENQSLL+TMDHLSPK KEEV+KLLNSKHLFFREMCAYH SC G HS E A+ S QQ Q QR C HS DN+P V N GR +TEGSKM KG S EEED+D+++++++D+D+++ V GG R HE + + S KR R A S Q+ + EL V+QDG+KS EK WM+ RL+QLEE R+ +Q +AFE+EKQ++KW+KF KKER+ME ++L NERM+L+NERM+L+LRQKELEL+D Q Q S N+ S
Sbjct: 1 MYSTMGSGMLGLEMS---LHHHPPQQNPQNPHQ---LQQHPHPQ--LVSYGHHEADHHQHPQTQQSVKPSYPFAPKPKPQQLTLSDEDEPGLTPEDSAGGDGKKKLSPWQRMKWTDSMVKLLIMVVFYIGDEAG-SDGN----EKKKGGG--VLQKKGKWKSVSRAMMERGFCVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLLETMDHLSPKRKEEVKKLLNSKHLFFREMCAYHNSCGGAAAANGGGAAATSGGASGPHHSPEVAAEPS---QQIQPHQR--CFHSVDNTPIVPNSGRAETEGSKMAKGGSPEEEDEDDEEDENDDDDDEDEDEIVGGGVRDHEEDEEDGGDEKCSRKRQRKGMLAFPSPLIQQLSTELTSVVQDGSKSLLEKGHWMKNRLIQLEEQRVTYQYEAFEIEKQRLKWVKFSSKKEREMERDKLKNERMKLENERMLLLLRQKELELIDLHQPPQISSNKRS 469
BLAST of XM_017393514.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251K4M8 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 481.871 bits (1239), Expect = 1.792e-163
Identity = 280/489 (57.26%), Postives = 343/489 (70.14%), Query Frame = 0
Match: A0A251K4M8 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 481.871 bits (1239), Expect = 1.792e-163
Identity = 280/489 (57.26%), Postives = 343/489 (70.14%), Query Frame = 0
Query: 125 MEGNGMPNGMFSGINSGMLGLEMSPQQYQHLQAQQNPQNPQNPNLSQQHPHTHHT-MVSFGQNEVDHHHTQNQQAVKQGYPYGAKPRTQ--QLTFSDDDEAGVGAEDS-GGKRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSCNGGAQHSAEAGADSSHVQQQQQQQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGVS------VEEEDDDEDDNDDEDEDNDEVEGGARGH-------EHESDLDVKITSHKRTRNETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLDSQQQHQ-SCNRSS 595
ME NG+P G+FSG+ SGMLGLEM QQ Q Q +P H HH M+ +GQ+E D+HH Q+QQA+K GYPY + Q Q T SD+DE G +D+ GKR SPWQRMKWTD MV+LLIM VFYIGD+ G EGND G+KK GG QKKGKWKSVS+AMME+GFFVSPQQCEDKFNDLNKRYKRVNDILGKGT CKVVENQSLL+TMD LSPKMKEEV+KLLNSKHLFFREMCAYH SC G+ A ++ H Q QQ+R C HSS+ + R++TEGSKM K S ++++ +ED++D +DE ++ +EG +RGH E E D D K S KR R E ++ S Q+ N++L VIQDG KS+WEK+ WM++RLMQLEE ++ +QCQAFELEKQ++KW+KF KKER+ME +L NER RL++ERMVL++RQKELELLD QQ Q S N+ S
Sbjct: 1 MEHNGLPGGIFSGMGSGMLGLEMPLQQQQQQNPQNPQNSP----------HLHHPQMLGYGQHESDNHHPQSQQAMKHGYPYASSTARQKPQSTVSDEDEPGFNGDDTTDGKRKVSPWQRMKWTDSMVRLLIMAVFYIGDEAG-PEGNDPTGKKKAGG---LSQKKGKWKSVSRAMMEKGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTGCKVVENQSLLETMD-LSPKMKEEVKKLLNSKHLFFREMCAYHNSCGHGSSGVATDQSNPQHPQASSHAQQQR-CSHSSETA-QFMTHSRSETEGSKMAKRGSNEEDDEEDDDESEEDEDDSDDEVDEAIEGNSRGHKNCDHGHEDEDDHDEK-GSKKRQRTEVFSLSSAMMQQLNSDLVSVIQDGAKSTWEKKHWMKLRLMQLEEQQVSYQCQAFELEKQRLKWVKFSSKKEREMERAKLENERRRLESERMVLLIRQKELELLDLHQQQQISSNKRS 471
BLAST of XM_017393514.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AQ18 ((transcriptional regulator EFH1 isoform X1 {ECO:0000313|RefSeq:XP_021289063.1}))
HSP 1 Score: 476.863 bits (1226), Expect = 1.661e-161
Identity = 279/477 (58.49%), Postives = 346/477 (72.54%), Query Frame = 0
Match: A0A6J1AQ18 ((transcriptional regulator EFH1 isoform X1 {ECO:0000313|RefSeq:XP_021289063.1}))
HSP 1 Score: 476.863 bits (1226), Expect = 1.661e-161
Identity = 279/477 (58.49%), Postives = 346/477 (72.54%), Query Frame = 0
Query: 125 MEGNGMPNGMFSGINSGMLGLEMSPQQYQHLQAQQNPQNPQNPNLSQQHPHTHHTMVSFGQNEVDHHHTQNQQAVKQGYPYGAKPRTQQLT-FSDDDEAGVGAEDSGG--KRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSCN-------GGAQHSAEAGADSSHVQQQQQQQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMK--GVSVEEEDDDEDDNDDEDEDNDEVEGGARGH-----EHESDLDVKITSHKRTRNETYAPD-SNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLD 583
ME NG+P GMFSGI SGMLGLEM P Q Q QNPQ+ QNP+ HP MV++ +E D +Q+QQ+VKQGYP+ +K T+QL+ SD+DE G +D KR SPWQRMKWTD MV+LLIM V+YIGD+ G SEGND AG+KK GG LQKKGKWKSVS+AMME+GF+VSPQQCEDKFNDLNKRYKRVNDILG+GT+CKVVENQSLLDTMD LSPKMKEEVRKLLNSKHLFFREMCAYH SC GA HS E ++S +Q QQ Q+R CLHSSD + N GR D E SK+ K ++++DD+ D+D++++D + ++G +RGH E + D D K +S KR R +A S Q+ + E+ VIQDG+KS+WEK+ WM++RLMQLEE ++ +Q QAFELEKQ++KW+KF KKER+ME +L NER RL+NERMVL++RQKELE +D
Sbjct: 1 METNGLPGGMFSGIGSGMLGLEM-PLHPQQQQQPQNPQSAQNPHQLHHHPQ----MVAYSHHETDQ--SQHQQSVKQGYPFASK--TKQLSPLSDEDEPGFTPDDGAADAKRKISPWQRMKWTDSMVRLLIMAVYYIGDEAG-SEGNDPAGKKKAGG---LLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGTACKVVENQSLLDTMD-LSPKMKEEVRKLLNSKHLFFREMCAYHNSCGHGATAGASGANHSPEVATETSQIQHQQASNQQR-CLHSSDAAQIAGNSGRMDPEASKLAKVGSEEEDDDEDDDSDDDEDEDDEEAMDGHSRGHNGHGQEDDEDNDEK-SSRKRPRKGAFAMSLSPLMQQLSCEVVNVIQDGSKSAWEKKHWMKMRLMQLEEQQVSYQYQAFELEKQRLKWVKFSGKKEREMEKAKLENERRRLENERMVLLVRQKELEFVD 461
BLAST of XM_017393514.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A6M5D5 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 473.396 bits (1217), Expect = 1.212e-160
Identity = 269/473 (56.87%), Postives = 319/473 (67.44%), Query Frame = 0
Match: A0A6A6M5D5 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 473.396 bits (1217), Expect = 1.212e-160
Identity = 269/473 (56.87%), Postives = 319/473 (67.44%), Query Frame = 0
Query: 125 MEGNGMPNGMFSGINSGMLGLEMSPQQYQHLQAQQNPQNPQNPNLSQQHPHTHHTMVSFGQNEVDHHHTQNQQAVKQGYPYGAKPRTQ--QLTFSDDDEAGVGAEDSG--GKRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSCNGGAQ-------HSAEAGADSSHVQQQQQ---QQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGVSVEEEDDDEDDNDDEDEDNDEVEGGARGHEHESDLDVKITSHKRTRNETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLD 583
ME NG+P G+FS + SGMLGLEMS LQ Q +PNL HP MV++ E DHH QQ +K YPY + Q Q T SD+DE G +DS GK+ SPWQRMKWTD MV+LLIM VFYIGD+ G SEGND G+KK GG QKKGKWKSVS+AMME+GF+VSPQQCEDKFNDLNKRYKRVNDILGKGT+CKVVENQSLL+TMD LS KMKEEV+KLLNSKHLFFREMCAYH SC G+ HS E G D SH Q Q QQQR C HS++N+ V N RT+TEGSK+ KG + +DDEDE HE + S KR R E ++ S+ Q+ N+EL VIQDG KS+WEK+ WM++RLMQLEE ++ +QCQA ELEKQ++KW+KF KKER+ME +L NER RL++ERMVL++RQKELE LD
Sbjct: 1 MEPNGLPGGIFSDMGSGMLGLEMS------LQQQNTQNPQNSPNL--HHPQ----MVAYAHRESDHH---PQQTMKHAYPYASSTTRQKPQSTASDEDEPGFTGDDSTADGKKKVSPWQRMKWTDSMVRLLIMAVFYIGDEAG-SEGNDPTGKKKAGG---LSQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACKVVENQSLLETMD-LSTKMKEEVKKLLNSKHLFFREMCAYHNSCGHGSSGVASGNIHSPEVGTDQSHAQHPQSSHAQQQR--CSHSTENAQFVTN-SRTETEGSKLAKGG-----QNSHHGHDDEDE-----------HEEKG-------SRKRRRTEVFSLSSSLMQQLNSELASVIQDGAKSTWEKKHWMKLRLMQLEEQQVSYQCQALELEKQRLKWVKFSSKKEREMERAKLENERRRLESERMVLLIRQKELEFLD 427
BLAST of XM_017393514.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U9V3 ((uncharacterized protein LOC105174138 {ECO:0000313|RefSeq:XP_011094441.1}))
HSP 1 Score: 468.003 bits (1203), Expect = 4.455e-158
Identity = 272/494 (55.06%), Postives = 343/494 (69.43%), Query Frame = 0
Match: A0A6I9U9V3 ((uncharacterized protein LOC105174138 {ECO:0000313|RefSeq:XP_011094441.1}))
HSP 1 Score: 468.003 bits (1203), Expect = 4.455e-158
Identity = 272/494 (55.06%), Postives = 343/494 (69.43%), Query Frame = 0
Query: 125 MEGNGMPNGMFSGINSGMLGLEMSPQQYQHLQAQQNPQNPQNPNLSQQHPHTHHTMVSFGQNEVDHHHTQNQQAVKQGYPYGAKPRTQQLTFSDDDEAGVGAEDS--GGKRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSCN-----GGAQHSAEAGADSSHVQQQQQQQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGVS---------VEEEDDDEDDNDDEDEDNDEVEGGAR----GHEHESDLDVKITSHKRTRNETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLDSQQQHQSCNRSSMAG 598
ME N MP G +S + GMLGLEMS L PQ + QQ + S+G +E D+H +Q QQ+ KQGYP+ AK + Q LT SDDDE G AE+S GKR WQRMKWTD MV+LLIM+V+YIGD+ G +GND A +KKGGG LQKKGKWKSVS+AMMERGF+VSPQQCEDKFNDLNKRYKRVNDILGKG SC+VVENQ LLDTMDHL+PKMKEEV+KLLNSKHLFFREMCAYH SC G+ + GA + V Q Q Q++ CLHSS+N+P V NL R + EGSK++KGVS +++DD ++D+ DED D++ + G+R GHE ES+ +S KR R T+ S Q+ + E+ V+QDG KS +EKR WM+ +LM LEE R+ QCQ+FELEKQ++KWLKF+ KKER++E E+L NER++L+NERM+L++RQKELELLD ++ + SS+ G
Sbjct: 1 MESNAMPGGRYSNVQPGMLGLEMS------LNHHIPPQQNPHQMPQQQPHPNQPMVPSYGHHEADYH-SQAQQSAKQGYPFSAKSKNQTLTLSDDDEPGFLAENSTDDGKRKMPSWQRMKWTDNMVRLLIMVVYYIGDEVGSDQGNDPAAKKKGGG---VLQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGISCRVVENQRLLDTMDHLTPKMKEEVKKLLNSKHLFFREMCAYHNSCGHGSGASGSGAAGFPGAAAEAVSQTQLHLQQQRCLHSSENAPVVANLNRGENEGSKLVKGVSGENDDDQDDDDDQDDQDNDDQDEDGDDEVIGAGSRIHDHGHEDESNDTNDRSSTKRLRRGTF--HSPLIQQLDAEIMTVVQDGAKSPFEKRLWMKKKLMGLEEQRVGIQCQSFELEKQRLKWLKFRTKKEREIEREKLRNERLQLENERMMLLIRQKELELLDHHSPNKKSDPSSITG 482
BLAST of XM_017393514.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9VCP2 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 463.766 bits (1192), Expect = 2.178e-156
Identity = 273/497 (54.93%), Postives = 336/497 (67.61%), Query Frame = 0
Match: A0A2C9VCP2 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 463.766 bits (1192), Expect = 2.178e-156
Identity = 273/497 (54.93%), Postives = 336/497 (67.61%), Query Frame = 0
Query: 125 MEGNGMPNGMFSGINSGMLGLEMSPQQYQHLQAQQNPQNPQNPNLSQQHPHTHHT-MVSFGQNEVDHHHTQNQQAVKQGYPY--GAKPRTQQLTFSDDDEAGVGAED--SGGKRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSC----NG---GAQHSAEAGADSSHVQQQQQ---QQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGV------SVEEEDDDEDDNDDEDEDNDEVEGGARGHEHESDLDVKIT----SHKRTRNETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLDSQQQHQ-SCNRSS 595
ME NG+P G+FSG+ SG+LGLE + L QQNP N QN + H HH MV++ + DHH QQ +K YPY A Q SD+DE G +D S GKR SPWQRMKWTD MV+LLIM VFYIGD+ G SE ND G+KK GG QKKGKWKSVS+AMME+GF+VSPQQCEDKFNDLNKRYKRVNDILGKGT+CKVVENQ+LL+TMD LS KMKEEV+KLLNSKHLFFREMCAYH SC NG G HS E D SH Q Q QQQR C HSS+ + V N R +TEGSKM K ++++ ++DD+D ++++++ +EG +RG D S KR + ++ S+ Q+ N+EL VIQDG +S+WEK+ WM++RLMQLEE ++ +QCQAFELEKQ++KW+KF KKER+ME +L NER RL+ ERMVL++RQKELELLD QQ Q S N+ S
Sbjct: 1 MEHNGLPGGIFSGMGSGILGLE------RPLHQQQNPHNSQNSH------HLHHPQMVAYAHRDSDHHLQSQQQTLKHSYPYPSSASREKPQSPLSDEDEPGFAGDDNTSDGKRKVSPWQRMKWTDSMVRLLIMAVFYIGDEAG-SELNDPTGKKKAGG---LSQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACKVVENQTLLETMD-LSQKMKEEVKKLLNSKHLFFREMCAYHNSCGHGSNGVASGTNHSPELATDQSHAQHPQSSHAQQQR--CSHSSETAHFVTN-SRNETEGSKMGKRARNEEDDEEDDDESEDDDDDYDEDEDEAIEGNSRGQNGHGHEDEDEHEEKGSRKRRKTGVFSLISSLMQQLNSELMSVIQDGGRSTWEKKHWMKLRLMQLEEQQVSYQCQAFELEKQRLKWVKFSSKKEREMERAKLENERRRLEGERMVLLIRQKELELLDIHQQQQLSSNKRS 477
BLAST of XM_017393514.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6AQT1 ((nucleolar transcription factor 1-B-like isoform X1 {ECO:0000313|RefSeq:XP_022767190.1}))
HSP 1 Score: 461.455 bits (1186), Expect = 1.650e-155
Identity = 284/490 (57.96%), Postives = 351/490 (71.63%), Query Frame = 0
Match: A0A6P6AQT1 ((nucleolar transcription factor 1-B-like isoform X1 {ECO:0000313|RefSeq:XP_022767190.1}))
HSP 1 Score: 461.455 bits (1186), Expect = 1.650e-155
Identity = 284/490 (57.96%), Postives = 351/490 (71.63%), Query Frame = 0
Query: 125 MEGNGMPNGMFSGINSGMLGLEM----SPQQYQHLQAQQNPQNPQNPNLSQQHPHTHHTMVSFGQNEVDHHHTQNQQAVKQGYPYGAKP-RTQQLTFSDDDEAGVGAEDSGG--KRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSC-------NGGAQHSAEAGADSSHVQQQQQQQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGVSVEEEDDDEDDNDDEDEDNDE----VEGGARGHEHESDLDVKITSHKRTRNETYAPD-SNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLDSQ-----QQHQS 590
ME N +P GMFSGI SGMLGLE QQ Q+LQ+ QNP N H H MV+F E DH +Q+QQ+VKQGYP+ +K RT L SD+DE G +D KR SPWQRMKWTD MVKLLIM V+YIGD+ G SEGND G+KK GG LQKKGKWKSVS+AMME+GF+VSPQQCEDKFNDLNKRYKRVNDILG+GT+C+VVENQSLLDTMD LSPKMKEEV+KLLNSKHLFFREMCAYH+SC GA HS E ++S +Q QQ QQQR CLHSSDN+ N GR +TE K+ K S EE+DD++DD DD+++D+++ ++G +RG E + + D K +S KR R +A S Q+ ++E+ VIQDG++S+WEK+ WM++RLMQLEE ++ +Q +AFELEKQ++KW+KF KKER+ME +L NER RL+NERM L++RQKELEL+D Q QQH S
Sbjct: 1 METNALPGGMFSGIGSGMLGLETPLHPQQQQPQNLQSAQNPHNL----------HHHSQMVAFSHRETDH--SQHQQSVKQGYPFVSKTKRTSPL--SDEDEPGFTHDDGAADAKRKFSPWQRMKWTDNMVKLLIMAVYYIGDEIG-SEGNDPTGKKKAGG---LLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGTACRVVENQSLLDTMD-LSPKMKEEVKKLLNSKHLFFREMCAYHSSCGHGAAAGTSGANHSPEVATETSQIQHQQAQQQR--CLHSSDNAQIAGNSGRIETEVPKLSKVGSEEEDDDEDDDEDDDEDDDEDVEEAMDGHSRGQEDDEENDEK-SSRKRPRKGAFAMSLSPLMQQLSSEVMNVIQDGSRSAWEKKHWMKMRLMQLEEQQVSYQYKAFELEKQRLKWVKFSGKKEREMERAKLENERSRLENERMGLLVRQKELELVDLQRHNRPQQHSS 468
BLAST of XM_017393514.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2KQG8 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 460.299 bits (1183), Expect = 3.167e-155
Identity = 271/486 (55.76%), Postives = 327/486 (67.28%), Query Frame = 0
Match: A0A6N2KQG8 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 460.299 bits (1183), Expect = 3.167e-155
Identity = 271/486 (55.76%), Postives = 327/486 (67.28%), Query Frame = 0
Query: 125 MEGNGMPNGMFSGINSGMLGLEMSPQQYQHLQAQQNPQNPQNPNLSQQHPHTHHTMVSFGQNEVDHHHTQN-QQAVKQGYPYGA--KPRTQQLTFSDDDEAGVGAEDS--GGKRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSCNG-------GAQHSAE-AGADSSHVQQQQQQQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGVSVEE---EDDDEDDNDDE----DEDNDEVEGGAR-----GHEHESDLDVKITSHKRTRNETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLDSQ 585
ME NG G+F GI SGMLGLE+ P+N QNPN H HH V HH + N QQ+VK YPY + KP+ SD+DE +DS GKR SPWQRMKWTD MV+LLIM VFYIGD+ G SEG+D G+KK GG A QKKGKWKSVS+AMME+GF+VSPQQCEDKFNDLNKRYKRVNDILGKGT+C+VVE+Q+LLDTMD LSPK KEE+RKLLNSKHLFFREMC YH SC G HS E A S Q QQQ + C HS++N+ V N RT+TEGSKM K EE EDDD + ND+E D++++ +EG +R G E D + +S KR R + ++ S+ Q+ N E+ V+QDG KSSWEK WMR+RLMQLEE ++ +QCQAFELEKQ++KW+KF KKER+ME +L NER RL+NERMVLI+R+KELELLD+Q
Sbjct: 1 MEHNGKGGGIFPGIGSGMLGLEL---------PLHPPENSQNPN------HLHHPQVVA----YSHHESDNRQQSVKHAYPYASSSKPKLLLSPLSDEDEPSFTGDDSTTDGKRKMSPWQRMKWTDHMVRLLIMAVFYIGDEIG-SEGSDPIGKKKPGGL--AQQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVEDQNLLDTMD-LSPKTKEELRKLLNSKHLFFREMCVYHNSCGHAPSWVAFGNNHSPEMATGPSHAQHLQAAQQQHQRCSHSTENTQAVTN-SRTETEGSKMAKRARNEEDAVEDDDYESNDEEVHYEDDEDEAIEGDSRHQNGHGQGDEEDHHDEKSSRKR-RKDVFSTTSSLMQQLNGEIMNVLQDGAKSSWEKNHWMRLRLMQLEEQQVSYQCQAFELEKQRLKWVKFSSKKEREMERVKLENERSRLENERMVLIVRKKELELLDTQ 461
BLAST of XM_017393514.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6STV1 ((uncharacterized protein LOC113694709 isoform X1 {ECO:0000313|RefSeq:XP_027069362.1}))
HSP 1 Score: 459.914 bits (1182), Expect = 1.427e-154
Identity = 282/499 (56.51%), Postives = 341/499 (68.34%), Query Frame = 0
Match: A0A6P6STV1 ((uncharacterized protein LOC113694709 isoform X1 {ECO:0000313|RefSeq:XP_027069362.1}))
HSP 1 Score: 459.914 bits (1182), Expect = 1.427e-154
Identity = 282/499 (56.51%), Postives = 341/499 (68.34%), Query Frame = 0
Query: 125 MEGNGMP--NGMFSGINSGMLGLEMS-----PQQYQHLQAQQNPQNPQNPNLSQQHPHTHHTMVSFGQNEVD--HHHTQNQQAVKQGYPYGAKPRTQQLTFSDDDEAGVGAEDSG---GKRNASPWQRMKWTDGMVKLLIMMVFYIGDDQGVSEGNDVAGEKKGGGGGGALQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTSCKVVENQSLLDTMDHLSPKMKEEVRKLLNSKHLFFREMCAYHTSC----------NGGAQHSAEAGADSSHVQQQQQQQQRRTCLHSSDNSPNVHNLGRTDTEGSKMMKGVSVEEEDDDEDDNDDEDEDNDE--VEGGARGHEH---ESDLDVKITSHKRTRNETYAPDSNSFQEFNNELKYVIQDGTKSSWEKRQWMRIRLMQLEEHRMHHQCQAFELEKQKMKWLKFKHKKERDMEAERLANERMRLQNERMVLILRQKELELLD--SQQQHQSCNRS 594
ME +GM GM+S + SGMLGLE+S PQ P L P +HH MV FG +E D HH Q + KQ YP+ AK + Q L SDDDE G+G E+S G R PWQRMKWTD MV+LLIM+VFYIGD+ G SEGND AG+KKG GG LQKKGKWKSVS+AMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGT+C+VVENQSLLDTMDHLS KMKEEV+KLL+SKHLFFREMCAYH SC +G AQ S E G Q QQQQ+ CLH+S+N+ NL R + EGSK KG S EE++D++DD+DD+DE+ ++ VEGG G EH E D D R R S Q+ + EL V+QD +K+S EKRQW++ RL+QLEE + Q +AFELEKQ++KW+KF KKER+ME ++L+N+R+RL+NERM+L++RQKELELLD QQQHQS +S
Sbjct: 1 MESDGMAAGGGMYSNMGSGMLGLEISLHHQLPQGQTTQNPHHMQPQPPQQQLQPPPPPSHHPMVVFGHHEADQPHHPQHAQLSSKQAYPFSAKAKNQALAPSDDDEPGLGTENSADIDGMRKIPPWQRMKWTDNMVRLLIMVVFYIGDEVG-SEGNDPAGKKKGAGG--VLQKKGKWKSVSRAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLLDTMDHLSAKMKEEVKKLLSSKHLFFREMCAYHNSCGHGGTGGASSSGAAQQSTEVGGVEPSSQMQQQQR----CLHTSENASTPPNLARCEVEGSKTTKGRSFEEDNDEDDDDDDDDEEYEDDVVEGGGSGCEHGHPEEDDDTPDERCARKRRRKGIFLSPLVQQMSTELVKVLQDESKNSAEKRQWIKNRLLQLEERHVGFQSEAFELEKQRLKWVKFSSKKEREMERDKLSNDRLRLENERMMLLIRQKELELLDVYQQQQHQSSRKS 492
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BZJ5 | E-Value: 9.331e-165, PID: 60.46 | (Putative stress response protein NST1 {ECO:000031... [more] |
| A0A7J7GJ30 | E-Value: 4.256e-164, PID: 58.28 | Myb_DNA-bind_4 domain-containing protein {ECO:0000... [more] |
| A0A251K4M8 | E-Value: 1.792e-163, PID: 57.26 | Myb_DNA-bind_4 domain-containing protein {ECO:0000... [more] |
| A0A6J1AQ18 | E-Value: 1.661e-161, PID: 58.49 | (transcriptional regulator EFH1 isoform X1 {ECO:00... [more] |
| A0A6A6M5D5 | E-Value: 1.212e-160, PID: 56.87 | Myb_DNA-bind_4 domain-containing protein {ECO:0000... [more] |
| A0A6I9U9V3 | E-Value: 4.455e-158, PID: 55.06 | (uncharacterized protein LOC105174138 {ECO:0000313... [more] |
| A0A2C9VCP2 | E-Value: 2.178e-156, PID: 54.93 | Myb_DNA-bind_4 domain-containing protein {ECO:0000... [more] |
| A0A6P6AQT1 | E-Value: 1.650e-155, PID: 57.96 | (nucleolar transcription factor 1-B-like isoform X... [more] |
| A0A6N2KQG8 | E-Value: 3.167e-155, PID: 55.76 | Myb_DNA-bind_4 domain-containing protein {ECO:0000... [more] |
| A0A6P6STV1 | E-Value: 1.427e-154, PID: 56.51 | (uncharacterized protein LOC113694709 isoform X1 {... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |