Resource Type:
Polypeptide
Name:
XM_017393237.1
Identifier:
XM_017393237.1-protein
Sequence:
MASATSACLLPKPVAPKFPCSPTIVASATHLTNAPFLNNASLSDQLCHAP
RPCFRRYAKKNGWLDPFDFGDDPEMEYGSMYSEGKQDEDPRPPESPDNPY
GFLKFPMGYGVEVASLGLKIRGDVRRCCCVISGGVYENLLFFPTIQLIKA
RYPGVQVDVLASPRGKQTYELNKNVRWADAYDADEDFPDPAEYTDMIGIL
KNRYYDMILSTKLAGLGHASFLFMTTARDRVSYVYPNVNSAGAGLLLSQT
FTPDCVNLSDGGYHMYHQMTDWLGRPARGVPREPLPPLKVSISRKLKEYV
MEKYTKAGVEKGKYVVIHGIQSDSKASMQSRGDTDSLLPIQTWAEITSTI
SSGVKPVFVIPHEKVREDVEDIIGEEASIVFISTPGQLAALINDSVGVIA
TNTAAVQLSNAREKPCIALFSSEEKGKLFVPDADVKKCKIISSKTGVLAD
IDIETIKAAVQIFERPLALV
Sequence Length:
470
Sequence Checksum:
8c151fe76e907cf15b3ec59a5fa438c4
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017393237.1, derives from mRNA, XM_017393237.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017393237.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017393237.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BTN3 ((Uncharacterized protein {ECO:0000313|EMBL:MPA71957.1}) (Fragment))
HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0
Identity = 349/465 (75.05%), Postives = 402/465 (86.45%), Query Frame = 0
Match: A0A5B7BTN3 ((Uncharacterized protein {ECO:0000313|EMBL:MPA71957.1}) (Fragment))
HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0
Identity = 349/465 (75.05%), Postives = 402/465 (86.45%), Query Frame = 0
Query: 6 SACLLPKPVAPKFPCSPTIVASATHLTNAPFLNNASLSDQLCHAPRPCFRRYAKK-NGWLDPFDFGDDPEMEYGSMYSEGKQDEDPRPPESPDNPYGFLKFPMGYGVEVASLGLKIRGDVRRCCCVISGGVYENLLFFPTIQLIKARYPGVQVDVLASPRGKQTYELNKNVRWADAYDADEDFPDPAEYTDMIGILKNRYYDMILSTKLAGLGHASFLFMTTARDRVSYVYPNVNSAGAGLLLSQTFTPDCVNLSDGGYHMYHQMTDWLGRPARGVPREPLPPLKVSISRKLKEYVMEKYTKAGVEKGKYVVIHGIQSDSKASMQSRGDTDSLLPIQTWAEITSTISSGVKPVFVIPHEKVREDVEDIIGEEASIVFISTPGQLAALINDSVGVIATNTAAVQLSNAREKPCIALFSSEEKGKLFVPDADVKKCKIISSKTGVLADIDIETIKAAVQIFERPLAL 469
+ LLPK ++P F P+I + H TN FLN+ S +Q + FR AKK N WLDPFD GDDPEMEYGS++++GKQ+EDPRPP++P+NPYGFLKFPMGY VEVASLGLKIRGDVRRCCCVISGGVYENLLFFP IQLIK RYPGVQVDV+AS RGKQ++ELNKNVRWAD YD D+ FP+PA+YTDMIG+LK+RYYDMILSTKLAGLGHA+FLFM+TARDR+SY+YPNVN+AGAGLLLS+TFTPD +NLSDGGY+MYHQMTDWLGRPAR VPR+ +PPLKVSISRKLKE V KY AG EKGKY+VIHGIQSDSKASMQS+GDTDSLLPIQ WAEIT I GV+P+FVIPHEK RE+VE+++G+ ASIVFI+TPGQLAALINDS+GVIATNTAAVQL++AREKP IALF SEEKGKLFVP A+ KKC IISSKTG L DI++E +K+AVQI + PL L
Sbjct: 11 TTSLLPKSISPFFTNPPSI--PSNHFTNVSFLNHPS--EQPPCTKKSSFRPNAKKKNPWLDPFDDGDDPEMEYGSLFADGKQEEDPRPPDNPENPYGFLKFPMGYNVEVASLGLKIRGDVRRCCCVISGGVYENLLFFPVIQLIKDRYPGVQVDVVASARGKQSFELNKNVRWADVYDPDDHFPEPADYTDMIGVLKSRYYDMILSTKLAGLGHAAFLFMSTARDRISYIYPNVNAAGAGLLLSETFTPDSMNLSDGGYNMYHQMTDWLGRPARNVPRQIVPPLKVSISRKLKEVVEAKYKNAGAEKGKYIVIHGIQSDSKASMQSKGDTDSLLPIQVWAEITKAI-RGVRPIFVIPHEKERENVEEVVGDNASIVFITTPGQLAALINDSIGVIATNTAAVQLAHAREKPSIALFCSEEKGKLFVPSAEEKKCIIISSKTGKLIDINVEAVKSAVQILDMPLVL 470
BLAST of XM_017393237.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3B7A9 ((Photosynthetic NDH subunit of subcomplex B 1, chloroplastic {ECO:0000313|EMBL:PHU02381.1}))
HSP 1 Score: 716.842 bits (1849), Expect = 0.000e+0
Identity = 339/467 (72.59%), Postives = 394/467 (84.37%), Query Frame = 0
Match: A0A2G3B7A9 ((Photosynthetic NDH subunit of subcomplex B 1, chloroplastic {ECO:0000313|EMBL:PHU02381.1}))
HSP 1 Score: 716.842 bits (1849), Expect = 0.000e+0
Identity = 339/467 (72.59%), Postives = 394/467 (84.37%), Query Frame = 0
Query: 4 ATSACLLPKPVAPKFPCSPTIVASATHLTNAPFLNNASLSDQLCHAPRPCFRRYAKK-NGWLDPFDFGDDPEMEYGSMYSEGKQDEDPRPPESPDNPYGFLKFPMGYGVEVASLGLKIRGDVRRCCCVISGGVYENLLFFPTIQLIKARYPGVQVDVLASPRGKQTYELNKNVRWADAYDADEDFPDPAEYTDMIGILKNRYYDMILSTKLAGLGHASFLFMTTARDRVSYVYPNVNSAGAGLLLSQTFTPDCVNLSDGGYHMYHQMTDWLGRPARGVPREPLPPLKVSISRKLKEYVMEKYTKAGVEKGKYVVIHGIQSDSKASMQSRGDTDSLLPIQTWAEITSTISSGVKPVFVIPHEKVREDVEDIIGEEASIVFISTPGQLAALINDSVGVIATNTAAVQLSNAREKPCIALFSSEEKGKLFVPDADVKKCKIISSKTGVLADIDIETIKAAVQIFERPLAL 469
AT+ LLPK ++P F +P H TN PFLNN SL F AKK N WLDPFD+GDDPEMEYGS++S+GKQDEDPRPP++PD+PYGFLKFPMGY VE+ASLGLKIRGDVRRCCCV+ GGVYENLLFFP IQ+IK RYPGVQVD++ASPRGKQT+E+NKNVRWA+AYD D+DFP+PAEYTDM+GILK+RYYDMILSTKLAG+GHA FLFM+TARDRVSY+YPNVNSAGAGL LS+TFTP+ +NLS+GGYHMY QM DWLGRPAR VPR+PLPPLKVSISRKL+E V KY AGV+KGKY+VIHGI+SDSKASMQS+GDTDSLLPI+ WAEI I GVKPVFVIPHEK RE+VED +G +ASI+FI+TPGQLAAL++DSVGVIATNTAA+QL++AR KP + LF SE+K + FVP+A+ KC ISSKTG L DID+E +K AVQIF PLA+
Sbjct: 2 ATTTTLLPKSISPNFHTNPPYFFPIPHATNVPFLNNNSLYTTFSARKSGSFCLNAKKKNPWLDPFDYGDDPEMEYGSLFSDGKQDEDPRPPDNPDSPYGFLKFPMGYSVEIASLGLKIRGDVRRCCCVLDGGVYENLLFFPAIQMIKDRYPGVQVDIVASPRGKQTFEMNKNVRWANAYDLDDDFPEPAEYTDMVGILKSRYYDMILSTKLAGIGHAVFLFMSTARDRVSYIYPNVNSAGAGLFLSETFTPESLNLSEGGYHMYRQMVDWLGRPARKVPRQPLPPLKVSISRKLREVVEAKYKNAGVQKGKYIVIHGIKSDSKASMQSKGDTDSLLPIEIWAEIAEEI-RGVKPVFVIPHEKERENVEDAVGYDASILFITTPGQLAALVDDSVGVIATNTAAIQLAHARGKPSVGLFCSEDKARSFVPNAEENKCAAISSKTGKLVDIDVEAVKRAVQIFTMPLAI 467
BLAST of XM_017393237.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3A2I3 ((photosynthetic NDH subunit of subcomplex B 1, chloroplastic {ECO:0000313|RefSeq:XP_016562881.1}))
HSP 1 Score: 714.916 bits (1844), Expect = 0.000e+0
Identity = 338/470 (71.91%), Postives = 395/470 (84.04%), Query Frame = 0
Match: A0A2G3A2I3 ((photosynthetic NDH subunit of subcomplex B 1, chloroplastic {ECO:0000313|RefSeq:XP_016562881.1}))
HSP 1 Score: 714.916 bits (1844), Expect = 0.000e+0
Identity = 338/470 (71.91%), Postives = 395/470 (84.04%), Query Frame = 0
Query: 1 MASATSACLLPKPVAPKFPCSPTIVASATHLTNAPFLNNASLSDQLCHAPRPCFRRYAKK-NGWLDPFDFGDDPEMEYGSMYSEGKQDEDPRPPESPDNPYGFLKFPMGYGVEVASLGLKIRGDVRRCCCVISGGVYENLLFFPTIQLIKARYPGVQVDVLASPRGKQTYELNKNVRWADAYDADEDFPDPAEYTDMIGILKNRYYDMILSTKLAGLGHASFLFMTTARDRVSYVYPNVNSAGAGLLLSQTFTPDCVNLSDGGYHMYHQMTDWLGRPARGVPREPLPPLKVSISRKLKEYVMEKYTKAGVEKGKYVVIHGIQSDSKASMQSRGDTDSLLPIQTWAEITSTISSGVKPVFVIPHEKVREDVEDIIGEEASIVFISTPGQLAALINDSVGVIATNTAAVQLSNAREKPCIALFSSEEKGKLFVPDADVKKCKIISSKTGVLADIDIETIKAAVQIFERPLAL 469
+ AT+ LLPK ++P F +P H TN PFLNN SL F AKK N WLDPFD+GDDPEMEYGS++S+GKQDEDPRPP++PD+PYGFLKFPMGY VE+ASLGLKIRGDVRRCCCV+ GGVYENLLFFP IQ+IK RYPGVQVD++ASPRGKQT+E+NKNVRWA+AYD D+DFP+PAEYTDM+GILK+RYYDMILSTKLAG+GHA FLFM+TARDRVSY+YPNVNSAGAGL LS+TFTP+ +NLS+GGYHMY QM DWLGRPAR VPR+PLPPLKVSISRKL+E V KY AGV+KGKY+VIHGI+SDSKASMQS+GDTDSLLPI+ WAEI + I GVK VFVIPHEK RE+VED +G +ASI+FI+TPGQLAAL++DSVGVIATNTAA+QL++AR KP + LF SE+K + FVP+A+ KC ISSKTG L DID+E +K AVQIF PLA+
Sbjct: 4 LKMATTTTLLPKSISPNFHTNPPYFFPIPHATNVPFLNNNSLYTTFSARKSGSFCLNAKKKNPWLDPFDYGDDPEMEYGSLFSDGKQDEDPRPPDNPDSPYGFLKFPMGYSVEIASLGLKIRGDVRRCCCVLDGGVYENLLFFPAIQMIKDRYPGVQVDIVASPRGKQTFEMNKNVRWANAYDLDDDFPEPAEYTDMVGILKSRYYDMILSTKLAGIGHAVFLFMSTARDRVSYIYPNVNSAGAGLFLSETFTPESLNLSEGGYHMYRQMVDWLGRPARKVPRQPLPPLKVSISRKLREVVEAKYKNAGVQKGKYIVIHGIKSDSKASMQSKGDTDSLLPIEIWAEIAAEI-RGVKLVFVIPHEKERENVEDAVGYDASILFITTPGQLAALVDDSVGVIATNTAAIQLAHARGKPSVGLFCSEDKARSFVPNAEENKCAAISSKTGKLVDIDVEAVKRAVQIFTMPLAI 472
BLAST of XM_017393237.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8FUR1 ((Photosynthetic NDH subunit of subcomplex B 1, chloroplastic {ECO:0000313|EMBL:PHT88437.1}))
HSP 1 Score: 714.916 bits (1844), Expect = 0.000e+0
Identity = 338/470 (71.91%), Postives = 395/470 (84.04%), Query Frame = 0
Match: A0A1U8FUR1 ((Photosynthetic NDH subunit of subcomplex B 1, chloroplastic {ECO:0000313|EMBL:PHT88437.1}))
HSP 1 Score: 714.916 bits (1844), Expect = 0.000e+0
Identity = 338/470 (71.91%), Postives = 395/470 (84.04%), Query Frame = 0
Query: 1 MASATSACLLPKPVAPKFPCSPTIVASATHLTNAPFLNNASLSDQLCHAPRPCFRRYAKK-NGWLDPFDFGDDPEMEYGSMYSEGKQDEDPRPPESPDNPYGFLKFPMGYGVEVASLGLKIRGDVRRCCCVISGGVYENLLFFPTIQLIKARYPGVQVDVLASPRGKQTYELNKNVRWADAYDADEDFPDPAEYTDMIGILKNRYYDMILSTKLAGLGHASFLFMTTARDRVSYVYPNVNSAGAGLLLSQTFTPDCVNLSDGGYHMYHQMTDWLGRPARGVPREPLPPLKVSISRKLKEYVMEKYTKAGVEKGKYVVIHGIQSDSKASMQSRGDTDSLLPIQTWAEITSTISSGVKPVFVIPHEKVREDVEDIIGEEASIVFISTPGQLAALINDSVGVIATNTAAVQLSNAREKPCIALFSSEEKGKLFVPDADVKKCKIISSKTGVLADIDIETIKAAVQIFERPLAL 469
+ AT+ LLPK ++P F +P H TN PFLNN SL F AKK N WLDPFD+GDDPEMEYGS++S+GKQDEDPRPP++PD+PYGFLKFPMGY VE+ASLGLKIRGDVRRCCCV+ GGVYENLLFFP IQ+IK RYPGVQVD++ASPRGKQT+E+NKNVRWA+AYD D+DFP+PAEYTDM+GILK+RYYDMILSTKLAG+GHA FLFM+TARDRVSY+YPNVNSAGAGL LS+TFTP+ +NLS+GGYHMY QM DWLGRPAR VPR+PLPPLKVSISRKL+E V KY AGV+KGKY+VIHGI+SDSKASMQS+GDTDSLLPI+ WAEI + I GVK VFVIPHEK RE+VED +G +ASI+FI+TPGQLAAL++DSVGVIATNTAA+QL++AR KP + LF SE+K + FVP+A+ KC ISSKTG L DID+E +K AVQIF PLA+
Sbjct: 4 LKMATTTTLLPKSISPNFHTNPPYFFPIPHATNVPFLNNNSLYTTFSARKSGSFCLNAKKKNPWLDPFDYGDDPEMEYGSLFSDGKQDEDPRPPDNPDSPYGFLKFPMGYSVEIASLGLKIRGDVRRCCCVLDGGVYENLLFFPAIQMIKDRYPGVQVDIVASPRGKQTFEMNKNVRWANAYDLDDDFPEPAEYTDMVGILKSRYYDMILSTKLAGIGHAVFLFMSTARDRVSYIYPNVNSAGAGLFLSETFTPESLNLSEGGYHMYRQMVDWLGRPARKVPRQPLPPLKVSISRKLREVVEAKYKNAGVQKGKYIVIHGIKSDSKASMQSKGDTDSLLPIEIWAEIAAEI-RGVKLVFVIPHEKERENVEDAVGYDASILFITTPGQLAALVDDSVGVIATNTAAIQLAHARGKPSVGLFCSEDKARSFVPNAEENKCAAISSKTGKLVDIDVEAVKRAVQIFTMPLAI 472
BLAST of XM_017393237.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BH63 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8541996.1}))
HSP 1 Score: 703.36 bits (1814), Expect = 0.000e+0
Identity = 350/465 (75.27%), Postives = 402/465 (86.45%), Query Frame = 0
Match: A0A5J5BH63 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8541996.1}))
HSP 1 Score: 703.36 bits (1814), Expect = 0.000e+0
Identity = 350/465 (75.27%), Postives = 402/465 (86.45%), Query Frame = 0
Query: 6 SACLLPKPVAPKFPCSPTIVASATHLTNAPFLNNASLSDQLCHAPRPCFRRYAKK-NGWLDPFDFGDDPEMEYGSMYSEGKQDEDPRPPESPDNPYGFLKFPMGYGVEVASLGLKIRGDVRRCCCVISGGVYENLLFFPTIQLIKARYPGVQVDVLASPRGKQTYELNKNVRWADAYDADEDFPDPAEYTDMIGILKNRYYDMILSTKLAGLGHASFLFMTTARDRVSYVYPNVNSAGAGLLLSQTFTPDCVNLSDGGYHMYHQMTDWLGRPARGVPREPLPPLKVSISRKLKEYVMEKYTKAGVEKGKYVVIHGIQSDSKASMQSRGDTDSLLPIQTWAEITSTISSGVKPVFVIPHEKVREDVEDIIGEEASIVFISTPGQLAALINDSVGVIATNTAAVQLSNAREKPCIALFSSEEKGKLFVPDADVKKCKIISSKTGVLADIDIETIKAAVQIFERPLAL 469
+ LLPK ++P F +PT + S TH TN FLN+ S LC + FR AKK N WLDPFD GDDP+MEYGS++S+GKQDEDPRPP++P++PYGFLKFPMGY VEVASLGLKIRGDVRRCCCVISGGVYENLLFFP IQLIK RYPGVQVDV+ SPRGKQTYELNKNVRWAD YD D+DFP+PA+YT+MIG+LKNRYYDMILSTKLAGLGHA+FLFM+TARDRVSY+YPNVN+AGAGLLLS+TFTPD +NLSDGGY+MYHQM DWLGRPAR VPR+P+PPLKVS+SRKLKE V KY G EKGKY+VIHGIQSDSKASMQSRGDTDSLLPIQ WAEIT I GV+P+FVIPHEK RE+VE+++G++ASIVFI+TPGQL ALINDS+GVIATNTAAVQL+ AREKP IALF SEEKG LFVP+A+ KKC IISS TG L DI++E + +A+QI +RPL +
Sbjct: 3 TTSLLPKSISPFF-TNPTSIPS-THFTNVSFLNHPS-QHPLC-TKKWSFRPNAKKINPWLDPFDDGDDPDMEYGSLFSDGKQDEDPRPPDNPESPYGFLKFPMGYNVEVASLGLKIRGDVRRCCCVISGGVYENLLFFPVIQLIKDRYPGVQVDVVTSPRGKQTYELNKNVRWADVYDPDDDFPEPADYTEMIGVLKNRYYDMILSTKLAGLGHAAFLFMSTARDRVSYIYPNVNAAGAGLLLSETFTPDSMNLSDGGYNMYHQMNDWLGRPARNVPRQPVPPLKVSLSRKLKEVVEAKYKNVGAEKGKYIVIHGIQSDSKASMQSRGDTDSLLPIQVWAEITKAI-RGVRPIFVIPHEKERENVEEVVGDDASIVFITTPGQLTALINDSIGVIATNTAAVQLAIAREKPSIALFCSEEKGNLFVPNAEEKKCTIISSATGKLIDINVEAVTSAIQILDRPLVV 462
BLAST of XM_017393237.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200QNK2 ((Uncharacterized protein {ECO:0000313|EMBL:OVA11995.1}))
HSP 1 Score: 702.975 bits (1813), Expect = 0.000e+0
Identity = 335/435 (77.01%), Postives = 377/435 (86.67%), Query Frame = 0
Match: A0A200QNK2 ((Uncharacterized protein {ECO:0000313|EMBL:OVA11995.1}))
HSP 1 Score: 702.975 bits (1813), Expect = 0.000e+0
Identity = 335/435 (77.01%), Postives = 377/435 (86.67%), Query Frame = 0
Query: 41 SLSDQLCHAPRPCFRRYA------KKNGWLDPFDFGDDPEMEYGSMYSEGKQDEDPRPPESPDNPYGFLKFPMGYGVEVASLGLKIRGDVRRCCCVISGGVYENLLFFPTIQLIKARYPGVQVDVLASPRGKQTYELNKNVRWADAYDADEDFPDPAEYTDMIGILKNRYYDMILSTKLAGLGHASFLFMTTARDRVSYVYPNVNSAGAGLLLSQTFTPDCVNLSDGGYHMYHQMTDWLGRPARGVPREPLPPLKVSISRKLKEYVMEKYTKAGVEKGKYVVIHGIQSDSKASMQSRGDTDSLLPIQTWAEITSTISSGVKPVFVIPHEKVREDVEDIIGEEASIVFISTPGQLAALINDSVGVIATNTAAVQLSNAREKPCIALFSSEEKGKLFVPDADVKKCKIISSKTGVLADIDIETIKAAVQIFERPLAL 469
+LS + H RR KKN WLDPFD+GDDPEMEYGS+YSEGKQDEDPRPPE P+NPYGFLKFP G+ EVAS+G K+RGDVRRCCCV+SGGVYENLLFFPTIQLIK RYPGVQVDV+ SPRGKQTYELNKNVRWADAYD DEDFPDPAEYTDMIGILK RYYDMILSTKLAG+GHA+FLFMT++RD VSYVYPNVN+AGAG++LSQTFTPD +NLS+GGYHMYHQM DWLGRP VPR+P+PPLKVSISRKLKE V KY AG EKGK+VVIHGI+SDSKASMQSRGDTDSLLPIQ W EI I GVKPVFVIPHEK R+DVE+++ ++ASIVFI+TPGQLAALINDS+GVIATNTAA+QL+NAR+KP IALF SEEKG+LFVP+A+ K+C ISSKTG L DID+E +K+A+QIFE LAL
Sbjct: 32 TLSFSVVHPSETSCRRAKFTANAKKKNSWLDPFDYGDDPEMEYGSLYSEGKQDEDPRPPEDPNNPYGFLKFPPGFNPEVASIGSKVRGDVRRCCCVVSGGVYENLLFFPTIQLIKDRYPGVQVDVVTSPRGKQTYELNKNVRWADAYDPDEDFPDPAEYTDMIGILKGRYYDMILSTKLAGIGHAAFLFMTSSRDTVSYVYPNVNAAGAGVILSQTFTPDRLNLSEGGYHMYHQMLDWLGRPRHKVPRQPVPPLKVSISRKLKEVVETKYKNAGAEKGKFVVIHGIESDSKASMQSRGDTDSLLPIQVWNEIAKAI-RGVKPVFVIPHEKERDDVEEVVLDDASIVFITTPGQLAALINDSIGVIATNTAAIQLANARDKPSIALFCSEEKGRLFVPNAEEKRCVTISSKTGKLIDIDVEAVKSALQIFEGLLAL 465
BLAST of XM_017393237.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J6VXP4 ((Photosynthetic ndh subunit of subcomplex b 1 protein {ECO:0000313|EMBL:KAF5188955.1}))
HSP 1 Score: 700.664 bits (1807), Expect = 0.000e+0
Identity = 335/463 (72.35%), Postives = 384/463 (82.94%), Query Frame = 0
Match: A0A7J6VXP4 ((Photosynthetic ndh subunit of subcomplex b 1 protein {ECO:0000313|EMBL:KAF5188955.1}))
HSP 1 Score: 700.664 bits (1807), Expect = 0.000e+0
Identity = 335/463 (72.35%), Postives = 384/463 (82.94%), Query Frame = 0
Query: 6 SACLLPKPVAPKFPCSPTIVASATHLTNAPFLNNASLSDQLCHAPRPCFRRYAKKNGWLDPFDFGDDPEMEYGSMYSEGKQDEDPRPPESPDNPYGFLKFPMGYGVEVASLGLKIRGDVRRCCCVISGGVYENLLFFPTIQLIKARYPGVQVDVLASPRGKQTYELNKNVRWADAYDADEDFPDPAEYTDMIGILKNRYYDMILSTKLAGLGHASFLFMTTARDRVSYVYPNVNSAGAGLLLSQTFTPDCVNLSDGGYHMYHQMTDWLGRPARGVPREPLPPLKVSISRKLKEYVMEKYTKAGVEKGKYVVIHGIQSDSKASMQSRGDTDSLLPIQTWAEITSTISSGVKPVFVIPHEKVREDVEDIIGEEASIVFISTPGQLAALINDSVGVIATNTAAVQLSNAREKPCIALFSSEEKGKLFVPDADVKKCKIISSKTGVLADIDIETIKAAVQIFERPLA 468
+ LL + + P SP V+S T LTN N S LC+ KKN WLDPFDFGDD +ME G++YSEGKQDEDPRPPE+PDNPYGFLKFP G+ VE+ASLG KIRGDVRRC CVI+GGVYE+LLFFPTIQLIK RYPGVQ+DVLASPR KQT+ELNKNVRWA+AYD D DFPDPAEYTDMIGILK RYYDM+LSTKLAG+GHA+FLFMTTAR+RVSY+YPNVN+AGAGL+LS+TFTP+ +NLS+GGY+MY QM DWLGRP VPR P+PPLKVSISRKLKE V KY AG EKG Y+VIHG++SDSKASMQS GDTDSLLPIQ WAEI + G+KPVFVIPHEK+REDVE+I+GE+ASIVFI+TPGQLAA+INDS GVIATNTAA+QL+NAREKP +ALFSSEEKG+LFVP+A KKC IISSKTG L DIDIE +K A+ FE ++
Sbjct: 3 NTSLLHQSITPFLTSSPASVSS-TQLTNLTLYLNPSEKQPLCYRRLSVAVNLKKKNPWLDPFDFGDDSDMENGTVYSEGKQDEDPRPPENPDNPYGFLKFPYGFSVEIASLGSKIRGDVRRCGCVIAGGVYESLLFFPTIQLIKDRYPGVQIDVLASPRAKQTFELNKNVRWANAYDLDTDFPDPAEYTDMIGILKERYYDMVLSTKLAGIGHAAFLFMTTARERVSYIYPNVNAAGAGLMLSETFTPEGLNLSEGGYNMYAQMNDWLGRPRNKVPRHPVPPLKVSISRKLKEVVEMKYKTAGAEKGNYIVIHGLESDSKASMQSLGDTDSLLPIQVWAEIAKG-TRGIKPVFVIPHEKIREDVEEIVGEDASIVFITTPGQLAAIINDSAGVIATNTAAIQLANAREKPSVALFSSEEKGRLFVPNAAEKKCTIISSKTGKLIDIDIEAVKNAIGNFEESMS 463
BLAST of XM_017393237.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P8CQE6 ((photosynthetic NDH subunit of subcomplex B 1, chloroplastic isoform X3 {ECO:0000313|RefSeq:XP_031386692.1}))
HSP 1 Score: 698.738 bits (1802), Expect = 0.000e+0
Identity = 337/465 (72.47%), Postives = 394/465 (84.73%), Query Frame = 0
Match: A0A6P8CQE6 ((photosynthetic NDH subunit of subcomplex B 1, chloroplastic isoform X3 {ECO:0000313|RefSeq:XP_031386692.1}))
HSP 1 Score: 698.738 bits (1802), Expect = 0.000e+0
Identity = 337/465 (72.47%), Postives = 394/465 (84.73%), Query Frame = 0
Query: 6 SACLLPKPVAPKFPCSPTIVASATHLTNAPFLNNASLSDQLCHAPRPCFRRYAKK-NGWLDPFDFGDDPEMEYGSMYSEGKQDEDPRPPESPDNPYGFLKFPMGYGVEVASLGLKIRGDVRRCCCVISGGVYENLLFFPTIQLIKARYPGVQVDVLASPRGKQTYELNKNVRWADAYDADEDFPDPAEYTDMIGILKNRYYDMILSTKLAGLGHASFLFMTTARDRVSYVYPNVNSAGAGLLLSQTFTPDCVNLSDGGYHMYHQMTDWLGRPARGVPREPLPPLKVSISRKLKEYVMEKYTKAGVEKGKYVVIHGIQSDSKASMQSRGDTDSLLPIQTWAEITSTISSGVKPVFVIPHEKVREDVEDIIGEEASIVFISTPGQLAALINDSVGVIATNTAAVQLSNAREKPCIALFSSEEKGKLFVPDADVKKCKIISSKTGVLADIDIETIKAAVQIFERPLAL 469
S+ LLPKPV P F + + S+ F N + + A RP F +AKK N WLDPFD G+DP+MEYGS++++GKQ+ED RPP++PD+PYGFLKFPMGY VEVA LGLK+RGDVRRCCCV+SGGVYENLLFFP IQLIK RYPGVQVDV+ASPRGKQTYELNKNVRWADAYD D+DFP+PAEY DMIG+LK+RYYDMILST+LAGLGHASFLFMT+ARDRVSY+YPNVN+AGAGLLLS+TFT + +NLS+GGY+MYH+M DWLGRP R VPR P+PPLKVSISRKLKE V K AG EKGKY+VIHG++SDSKASMQS+GD DSLLPI WAEI +S G+KPVFVIPHEK RE+VE+I+GE+ SIVFI+TPGQLAALINDSVGVI+TNTAAVQL+NAR+KP IALF SEEK KLFVP+A+ KKC ISSKTG LADI++ET+K ++QIF+ LAL
Sbjct: 11 SSTLLPKPVTP-FLTNQCPIPSSRFAKLPSFPN---MPESGSSARRPNFSTHAKKKNPWLDPFDDGEDPDMEYGSLFADGKQEEDTRPPDNPDSPYGFLKFPMGYNVEVAPLGLKVRGDVRRCCCVVSGGVYENLLFFPAIQLIKDRYPGVQVDVVASPRGKQTYELNKNVRWADAYDPDDDFPEPAEYIDMIGLLKSRYYDMILSTRLAGLGHASFLFMTSARDRVSYIYPNVNAAGAGLLLSETFTAESLNLSEGGYNMYHEMLDWLGRPFRSVPRTPVPPLKVSISRKLKELVEAKVKSAGAEKGKYIVIHGLESDSKASMQSKGDADSLLPIGVWAEIAEGVSRGIKPVFVIPHEKERENVEEIVGEDTSIVFITTPGQLAALINDSVGVISTNTAAVQLANARKKPSIALFGSEEKAKLFVPNAEEKKCFTISSKTGKLADIEVETVKNSMQIFDVALAL 471
BLAST of XM_017393237.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A830CC05 ((Uncharacterized protein {ECO:0000313|EMBL:GFP93543.1}))
HSP 1 Score: 698.738 bits (1802), Expect = 0.000e+0
Identity = 335/463 (72.35%), Postives = 389/463 (84.02%), Query Frame = 0
Match: A0A830CC05 ((Uncharacterized protein {ECO:0000313|EMBL:GFP93543.1}))
HSP 1 Score: 698.738 bits (1802), Expect = 0.000e+0
Identity = 335/463 (72.35%), Postives = 389/463 (84.02%), Query Frame = 0
Query: 9 LLPKPVAPKFPCSPTIVASATHLTNAPFLNNAS--LSDQLCHAPRPCFRRYAKKNGWLDPFDFGDDPEMEYGSMYSEGKQDEDPRPPESPDNPYGFLKFPMGYGVEVASLGLKIRGDVRRCCCVISGGVYENLLFFPTIQLIKARYPGVQVDVLASPRGKQTYELNKNVRWADAYDADEDFPDPAEYTDMIGILKNRYYDMILSTKLAGLGHASFLFMTTARDRVSYVYPNVNSAGAGLLLSQTFTPDCVNLSDGGYHMYHQMTDWLGRPARGVPREPLPPLKVSISRKLKEYVMEKYTKAGVEKGKYVVIHGIQSDSKASMQSRGDTDSLLPIQTWAEITSTISSGVKPVFVIPHEKVREDVEDIIGEEASIVFISTPGQLAALINDSVGVIATNTAAVQLSNAREKPCIALFSSEEKGKLFVPDADVKKCKIISSKTGVLADIDIETIKAAVQIFERPLAL 469
LLPKP+ S + S T TN FL N S + + + RP + KKN WLDPFD GDDPEMEYG+++S+GKQ+ED RPP++PDNPYGFLKFP GY VE+ASLGLKIRGDVRRCCCVISGGVYENLLFFP IQLIK RYPGVQ+DV+ S RGKQTYE+NKNVRWA+ YD D+ FP+PAEYTDMIG++KNRYYDMILSTKLAGLGHA+FLFM+TARDRVSYVYPNVN+AGAGLLLS+TFTPD NLS+GGYHMYH+M DWLGRP R VPR+P+PPLKVSIS+KLKE V KY AG KGKY+VIHGI+SDSKASMQSRGDTDSLLP++ W EI S I G+KPVFVIPHEK RE+VED++G++ASIVFI+TPGQLAALINDS GVIATNTAA+QL++AREKP +ALF S++K K+FVP+ + KKC IISSKTG L DID+E +K AVQIF PLA+
Sbjct: 8 LLPKPIP-----SCISIPSQTQFTNLSFLTNPSPDHTRKSVSSTRPNAK---KKNPWLDPFDQGDDPEMEYGALFSDGKQEEDSRPPDNPDNPYGFLKFPAGYAVEIASLGLKIRGDVRRCCCVISGGVYENLLFFPAIQLIKDRYPGVQIDVVTSARGKQTYEINKNVRWANEYDLDDHFPEPAEYTDMIGVIKNRYYDMILSTKLAGLGHAAFLFMSTARDRVSYVYPNVNAAGAGLLLSETFTPDSTNLSEGGYHMYHEMIDWLGRPFRSVPRQPVPPLKVSISKKLKEVVEAKYKNAGAVKGKYIVIHGIKSDSKASMQSRGDTDSLLPMEIWDEIASVI-RGLKPVFVIPHEKERENVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLAHAREKPSVALFCSDDKAKVFVPNPEEKKCAIISSKTGKLVDIDVEAVKTAVQIFSMPLAI 461
BLAST of XM_017393237.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103XY01 ((Uncharacterized protein {ECO:0000313|EMBL:KVH99020.1}))
HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0
Identity = 342/471 (72.61%), Postives = 391/471 (83.01%), Query Frame = 0
Match: A0A103XY01 ((Uncharacterized protein {ECO:0000313|EMBL:KVH99020.1}))
HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0
Identity = 342/471 (72.61%), Postives = 391/471 (83.01%), Query Frame = 0
Query: 1 MASATSACLLPKPVAPKFPCSPTIVASATHLTNAPFLNNASLSDQLCHAPRPCFRRYAKK-NGWLDPFDFGDDPEMEYGSMYSEGKQDEDPRPPESPDNPYGFLKFPMGYGVEVASLGLKIRGDVRRCCCVISGGVYENLLFFPTIQLIKARYPGVQVDVLASPRGKQTYELNKNVRWADAYDADEDFPDPAEYTDMIGILKNRYYDMILSTKLAGLGHASFLFMTTARDRVSYVYPNVNSAGAGLLLSQTFTPDCVNLSDGGYHMYHQMTDWLGRPARGVPREPLPPLKVSISRKLKEYVMEKYTKAGVEKGKYVVIHGIQSDSKASMQSRGDTDSLLPIQTWAEITSTISSGVKPVFVIPHEKVREDVEDIIGEEASIVFISTPGQLAALINDSVGVIATNTAAVQLSNAREKPCIALFSSEEKGKLFVPD-ADVKKCKIISSKTGVLADIDIETIKAAVQIFERPLAL 469
MA+ T + LLPK + P F +PT ++S T N F N + P R AKK N WLDPFD G+DP+MEYGS YSEGKQ EDPRPPE+PDNPYGFLKFPMG+ EVASLGLKIRGDVRRCCCVISGGVYENLLFFPTIQL+K RYPGVQVDVL+S RGKQTYE+NKNVRWAD D D+DFP+PAEY D++G++KNRYYDMILSTKLAG+GHASFLFM+TAR+RV Y+YPNVNSAGAGL +S+TFTPD +NLS+GGYHMYHQMTDWL RP RGVPR+ +PPLKVS+SRKLK+ V KY AGVEKGKYVVIHGIQSDSKASMQSRGD DSLLP+ WAEIT +I GVKPV+VIPHEK RE+VE+IIG +A+IVFI+TPGQLAALINDSVGVI+TNTAAVQ++ AREKPC+ALF SEEK KLF+P+ D K I SSKTG L DID + +K AVQIFE PLA+
Sbjct: 1 MAATTPSSLLPKSIPPFF-TNPTTLSS-TRFPNLSFPTNPTDRQPHSTTRTPTVRPNAKKRNEWLDPFDTGEDPDMEYGSQYSEGKQSEDPRPPENPDNPYGFLKFPMGFMPEVASLGLKIRGDVRRCCCVISGGVYENLLFFPTIQLLKDRYPGVQVDVLSSARGKQTYEMNKNVRWADVIDPDDDFPEPAEYLDLLGLIKNRYYDMILSTKLAGVGHASFLFMSTARERVGYIYPNVNSAGAGLFMSETFTPDRLNLSEGGYHMYHQMTDWLARPGRGVPRQTVPPLKVSMSRKLKDTVAAKYKDAGVEKGKYVVIHGIQSDSKASMQSRGDVDSLLPLHIWAEITKSI-RGVKPVYVIPHEKERENVEEIIGYDANIVFITTPGQLAALINDSVGVISTNTAAVQIARAREKPCVALFGSEEKAKLFLPNLEDNNKFIIASSKTGKLVDIDTDAVKNAVQIFEMPLAI 468
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BTN3 | E-Value: 0.000e+0, PID: 75.05 | (Uncharacterized protein {ECO:0000313|EMBL:MPA7195... [more] |
| A0A2G3B7A9 | E-Value: 0.000e+0, PID: 72.59 | (Photosynthetic NDH subunit of subcomplex B 1, chl... [more] |
| A0A2G3A2I3 | E-Value: 0.000e+0, PID: 71.91 | (photosynthetic NDH subunit of subcomplex B 1, chl... [more] |
| A0A1U8FUR1 | E-Value: 0.000e+0, PID: 71.91 | (Photosynthetic NDH subunit of subcomplex B 1, chl... [more] |
| A0A5J5BH63 | E-Value: 0.000e+0, PID: 75.27 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8541... [more] |
| A0A200QNK2 | E-Value: 0.000e+0, PID: 77.01 | (Uncharacterized protein {ECO:0000313|EMBL:OVA1199... [more] |
| A0A7J6VXP4 | E-Value: 0.000e+0, PID: 72.35 | (Photosynthetic ndh subunit of subcomplex b 1 prot... [more] |
| A0A6P8CQE6 | E-Value: 0.000e+0, PID: 72.47 | (photosynthetic NDH subunit of subcomplex B 1, chl... [more] |
| A0A830CC05 | E-Value: 0.000e+0, PID: 72.35 | (Uncharacterized protein {ECO:0000313|EMBL:GFP9354... [more] |
| A0A103XY01 | E-Value: 0.000e+0, PID: 72.61 | (Uncharacterized protein {ECO:0000313|EMBL:KVH9902... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |