XM_017397784.1

Resource Type: 
Polypeptide
Name: 
XM_017397784.1
Identifier: 
XM_017397784.1-protein
Sequence: 
MPRPGPRPYECVRRAWHSDRHQPIRGSIIQQIFRVVNGRHSSATKGNREW
QEKLPIVVFKAEEIMYSKANSEVEYMDLETIWDRVNEAINIIIRRDESTE
TGDLLPPCVEAALNLGCVPVRASRSQRHNNPRTYLSNRTQDTSSLPPKVL
DNPTQGRIPTSRPLHYVNQSTVERPVTVNLNNLQSDSNRLAIQNNRSEPT
SSGKFPAAYEKFPSRKKQFLSVEANTSANVGHVYPLHSGTHFQPEVSWPG
LKTSNTVIVGTPVYPLVEPVKRGFFQNLFPRNEDDNALSRITHLDSRNKQ
QEVFEQTECDLSLRLGLFSDPCLNRGKGLASDIDIVGLHSSHDRGQQYDL
NSTQNREHTFFPTERPHNYLELSTSSRNFEGQVQNAEVATRKRSNVEDGP
IFWQPEPTANHFSGRMRWPGL
Sequence Length: 
421
Sequence Checksum: 
be05a64a89594b47432645c3d2a3b61b
View location in JBrowse: 
DCARv2_Chr5:23574290..23575927+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017397784.1, derives from mRNA, XM_017397784.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017397784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017397784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GZW9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5945845.1}))

HSP 1 Score: 454.907 bits (1169), Expect = 1.393e-156
Identity = 247/433 (57.04%), Postives = 298/433 (68.82%), Query Frame = 0
 
Query:    1 MPRPGPRPYECVRRAWHSDRHQPIRGSIIQQIFRVVNGRHSSATKGNREWQEKLPIVVFKAEEIMYSKANSEVEYMDLETIWDRVNEAINIIIRRDESTETGDLLPPCVEAALNLGCVPVRASRSQRHNNPRTYLSNRTQDTSSLPPKVLDNPTQGRIPTSRPLHYVNQSTVERPVTVNLNNLQSDSNRLAIQNNRSEPTSSGKFPAAYEKFPSRKKQFLSVEANTSANVGHVYPLHSGTHFQPEVSWPGL-----KTSNTVIVGTPVY-PLVEPVKRGFFQNLFPRNEDDNALSRITHLDSRNKQQEVFEQTECDLSLRLGLFSDPCLNRGKGLASDIDIVGLHSSHDRGQQYDLNSTQNREHTFFPTE-RPHNYLELSTSSRNFEGQVQNAEVATRKR-----SNVEDGPIFWQPEPTANHFSGRMRWPGL 421
            MPRPGPRPYECVRRAWHSDRHQP+RGSIIQQIFRVV+  HS  TK N+EWQEKLP+VV +AEEIMYSKANSE EYMDLET+WDR+N+AIN IIRRDESTETGDLLPPCVEAALNLGCVPVRASRSQ+H +PR+YL +RTQ+   +PP++L+N T  R P   P H  NQ T  RPV VN ++L  +S R  +Q NR+ PTSS  FP      PS +    S   N S N+G VYPL+  THFQPE++ P +     +  N +IVGTPV+  + EP K G  QNLF   +D++A +R++  D RN  ++  E T  DLSLRLGLF DPC+N  K LA + D VGL S         L+  +N+E +FFP E    N LE   S  NFEG+ QNAE A RKR     +N ED   F QPE  +N F+GRM+ PGL
Sbjct:    1 MPRPGPRPYECVRRAWHSDRHQPMRGSIIQQIFRVVHESHSPVTKKNKEWQEKLPVVVLRAEEIMYSKANSEAEYMDLETLWDRINDAINTIIRRDESTETGDLLPPCVEAALNLGCVPVRASRSQQHASPRSYLGSRTQEPGCIPPQILNNTTVERSPQLLPAHSGNQLTPVRPVAVNSSHLVIESTRNVMQKNRNNPTSSCNFP-----LPSVEVPPSSNNRNKSQNLGSVYPLYYSTHFQPEMAMPQMGFQVPRNPNAIIVGTPVFQSMTEPAKMGCLQNLFSCEKDESASNRVSQADFRNNHEKAPE-TGFDLSLRLGLFKDPCMNPEKVLAHETDNVGLSS---------LSPHRNKEFSFFPLETTTDNPLECHKSRWNFEGEDQNAEAAIRKRKAPFNNNTEDELFFSQPELRSNQFTGRMKRPGL 418
[Close]
BLAST of XM_017397784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z0X7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA37146.1}))

HSP 1 Score: 425.631 bits (1093), Expect = 5.482e-145
Identity = 240/431 (55.68%), Postives = 289/431 (67.05%), Query Frame = 0
 
Query:    1 MPRPGPRPYECVRRAWHSDRHQPIRGSIIQQIFRVVNGRHSSATKGNREWQEKLPIVVFKAEEIMYSKANSEVEYMDLETIWDRVNEAINIIIRRDESTETGDLLPPCVEAALNLGCVPVRASRSQRHNNPRTYLSNRTQDTSSLPPKVLDNPTQGRIPTSRPLHYVNQSTVERPVTVNLNNLQSDSNRLAIQNNRSEPTSSGKFPAAYEKFPS-RKKQFLSVEANTSANVGHVYPLHSGTHFQPEVS---WPGLKTSNTVIVGTPVYPLV-EPVKRGFFQNLFPRNEDDNALSRITHLDSRNKQQEVFEQTECDLSLRLGLFSDPCLNRGKGLASDIDIVGLHSSHDRGQQYDLNSTQNREHTFFPTERPHNYLELSTSSRNFEGQVQNAEVATRKR-----SNVEDGPIFWQPEPTANHFSGRMRWPGL 421
            MPRPGPRPYECVRRAWHSDRHQP+RGSIIQQIFRVV+  HSSATK N+EWQEKLPIVVFKAEEIMYS+ANSE EY  LET+WDRVNEAIN IIRRDES ETG+LLPPCVEAALNLGCV VRASRSQRH+NPR+YLS R Q+   +PPK+LDN T  R     PLH  NQ    R  +++  +L S+SNR   QN  S PT+S  FP + EKFP     QF  +E+NTS NVG VYPL+ GT FQP++S       K SNT+IVGTP++  + +P +    QNLF  + D+NA +R T  D R+  ++  E  ECDLSLRLGLFSDP    G   + D D VG  SS +  +  +L+   ++E +FFP +  +   E  T     EG+ Q  E   RKR     ++VEDG  FW P         RM+ PGL
Sbjct:    1 MPRPGPRPYECVRRAWHSDRHQPMRGSIIQQIFRVVHESHSSATKKNKEWQEKLPIVVFKAEEIMYSRANSEAEYTSLETLWDRVNEAINTIIRRDESMETGELLPPCVEAALNLGCVQVRASRSQRHSNPRSYLSPRAQEPGFVPPKILDNTTNERNSGLPPLHSSNQINFAR--SMSSTHLVSESNRHLTQN--SNPTASCNFPLSCEKFPHPGNNQFNPMESNTSLNVGSVYPLYYGTDFQPDMSRLICQNPKNSNTIIVGTPIFSSIPQPAEVACLQNLFSCDGDENASNRTTQSDFRDNHEKAPEM-ECDLSLRLGLFSDPHKIIGTCSSHDNDDVGSSSSQEGSRFSNLSPPTSKEFSFFPIKTANYPFEFHTKKWISEGEDQIVEADVRKRKAPFNNDVEDGKFFWPP--------TRMKRPGL 418
[Close]
BLAST of XM_017397784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZVX5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8523003.1}))

HSP 1 Score: 417.927 bits (1073), Expect = 4.880e-142
Identity = 230/431 (53.36%), Postives = 291/431 (67.52%), Query Frame = 0
 
Query:    1 MPRPGPRPYECVRRAWHSDRHQPIRGSIIQQIFRVVNGRHSSATKGNREWQEKLPIVVFKAEEIMYSKANSEVEYMDLETIWDRVNEAINIIIRRDESTETGDLLPPCVEAALNLGCVPVRASRSQRHNNPRTYLSNRTQDTSSLPPKVLDNPTQGRIPTSRPLHYVNQSTVERPVTVNLNNLQSDSNRLAIQNNRSEPTSSGKFPAAYEKFPSRKKQFLSVEANTSANVGHVYPLHSGTHFQPEVSW---PGLKTSNTVIVGTPVYPLVEPVKRGF--FQNLFPRNEDDNALSRITHLDSRNKQQEVFEQTECDLSLRLGLFSDPCLNRGKGLASDIDIVGLHSSHDRGQQYDLNSTQNREHTFFPTERPHNYLELSTSSRNFEGQVQNAEVATRKR-----SNVEDGPIFWQPEPTANHFSGRMRWPGL 421
            MPRPGPRPYECVRR WHSDRHQP+RGSIIQQI RVV+  H+SATK N+EWQEKLPIVVFKAEEIMYSKANSE +YMD ET+WDRVN+AIN IIRRDESTETG+LLPPCVEAALNLGC+PVRASRSQRH+NPR+YLS R Q+   +PPK+LDN T    P   PLH  NQ T+ RP TV+   L S+SNR   QNN   P++S  F  ++EK P          +NTS NVG VYPL+ GT FQP++S       K+S+T+IVG P++  + P + G    +NLF  + D+N   R T  D ++K ++V E  ECDLSLRLGL S+PC++  K    D   VG  +S +  +  +L+ ++ +E  FFP +  ++  +  T+  N EG+ QN E   RKR     ++ ++G  FW P        GRM+ PGL
Sbjct:    1 MPRPGPRPYECVRRVWHSDRHQPMRGSIIQQILRVVHESHNSATKKNKEWQEKLPIVVFKAEEIMYSKANSEADYMDHETLWDRVNDAINTIIRRDESTETGELLPPCVEAALNLGCIPVRASRSQRHSNPRSYLSPRAQEPGCVPPKILDNTTNEPNPRLPPLHSSNQLTLARPTTVSSTYLVSESNRHLTQNN--SPSASSNFLLSHEKPPP---------SNTSLNVGSVYPLYYGTDFQPDMSQLCRQTPKSSDTIIVGRPIFSSI-PERAGLVCLRNLFSSDGDENTSIRTTQADFKDKHEKVPEM-ECDLSLRLGLSSEPCMSIRKYSIHDNGDVGSSNSQEGSKFGELSPSKRKEFPFFPVKTTNDPFDFHTNKWNAEGEGQNVEADVRKRKAPFNNDADNGKYFWPP--------GRMKRPGL 410
[Close]
BLAST of XM_017397784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438C0F3 ((Uncharacterized protein {ECO:0000313|EMBL:RVW16712.1}))

HSP 1 Score: 415.231 bits (1066), Expect = 9.393e-141
Identity = 229/435 (52.64%), Postives = 284/435 (65.29%), Query Frame = 0
 
Query:    1 MPRPGPRPYECVRRAWHSDRHQPIRGSIIQQIFRVVNGRHSSATKGNREWQEKLPIVVFKAEEIMYSKANSEVEYMDLETIWDRVNEAINIIIRRDESTETGDLLPPCVEAALNLGCVPVRASRSQRHNNPRTYLSNRTQDTSSLPPKVLDNPTQGRIPTSRPLHYVNQSTVERPVTVNLNNLQSDSNRLAIQNNRSEPTSSGKFPAAYEKFPSRKKQFLSVEANTSANVGHVYPLHSGTHFQPEVSWPGLKT-----SNTVIVGTPV-YPLVEPVKRG-FFQNLFPRNEDDNALSRITHLDSRNKQQEVFEQT-------ECDLSLRLGLFSDPCLNRGKGLASDIDIVGLHSSHDRGQQYDLNSTQNREHTFFPTERPHNYLELSTSSRNFEGQVQNAEVATRKR-----SNVEDGPIFWQPEPTANHFSGRM 416
            MPRPGPRPYECVRRAWHSDRHQP+RGSIIQQIFRVV   HSSATK NREWQEKLPIVV KAEEIMYSKANSE EYMDL T+WDRVN+A+N IIRRDESTETG+LLPPC+EAALNLGCVPVRASRSQRHNNPR+YL++RTQ+ +S+ P+VLDN    R P  +P    NQ T  R + ++  +L  DS+R   QNN    T +  FP  YE FP    Q ++VE NT  N G VYPL+ GTHFQ E S  G +      +NTV VG P+   + EP + G   QNLF  +  +N L++          QE F  T       ECDLSLRLGL SDPC+ + K  A D + VG  SS +  +   L+  +++   FFP+E  ++     ++  N   + QN +   RKR     +++E G  F  PE  ++HF+GR+
Sbjct:    1 MPRPGPRPYECVRRAWHSDRHQPMRGSIIQQIFRVVTDTHSSATKKNREWQEKLPIVVLKAEEIMYSKANSETEYMDLGTLWDRVNDAVNTIIRRDESTETGELLPPCIEAALNLGCVPVRASRSQRHNNPRSYLTHRTQEPTSVSPRVLDNAVNERCPQLQPPSAGNQLTFGR-LNMDSTHLVLDSDRHVTQNNSLATTRNFHFP--YENFPLGSNQSMTVETNTPLNFGSVYPLYYGTHFQNEESHLGFQMPETANANTVFVGAPIGTSIAEPSEMGIILQNLFSSDGTENVLNK--------NAQENFRDTCGKEPVAECDLSLRLGLSSDPCMRKEKCSAPDTEDVGSSSSQEGAKVSGLSPGKSKGFCFFPSETANSPFGSCSNKWNSGDEGQNMDATVRKRKAPFNNDLEGGQFFLSPEIRSDHFTGRI 424
[Close]
BLAST of XM_017397784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QRX0 ((2-succinylbenzoate--CoA ligase {ECO:0000313|EMBL:PSS13868.1}))

HSP 1 Score: 409.068 bits (1050), Expect = 8.230e-139
Identity = 223/398 (56.03%), Postives = 272/398 (68.34%), Query Frame = 0
 
Query:    1 MPRPGPRPYECVRRAWHSDRHQPIRGSIIQQIFRVVNGRHSSATKGNREWQEKLPIVVFKAEEIMYSKANSEVEYMDLETIWDRVNEAINIIIRRDESTETGDLLPPCVEAALNLGCVPVRASRSQRHNNPRTYLSNRTQDTSSLPPKVLDNPTQGRIPTSRPLHYVNQSTVERPVTVNLNNLQSDSNRLAIQNNRSE-PTSSGKFPAAYEKFPSRKKQFLSVEANTSANVGHVYPLHSGTHFQPEVSWPGLKT---SNTVIVGTPVYPLV-EPVKRGFFQNLFPRNEDDNALSRITHLDSRNKQQEVFEQTECDLSLRLGLFSDPCLNRGKGLASDIDIVGLHSSHDRGQQYDLNSTQNREHTFFPTERPHNYLELSTSSRNFEGQVQNAEVATRKR 393
            MPRPGPRPYECVRR+WHS RHQP+RG+IIQQIFRVVN  HSSATK NREWQEKLPIVV KAEEI+YSKANSE EYMD +T+WDRVN+A+N IIRRDESTE  DLL PCVEAALNLGCVPVRASRSQ+H NPR+YLS RTQDTS L P V D+ +  R P   PLHY NQ T  RP+  N  +L +++NR  +QNN  + P +S  F +   + P            TS +V  VYPL+ GTHF+PE+   G K    SN++IVGTPV+P + EP K G  QN F      N+  R+  +D RN  ++  E T  DLSLRLGLF DPC +  K  A D D V L SS +R +  +L+  QN+E++FFP +  +++    TS +NF G   NA+ A RKR
Sbjct:    1 MPRPGPRPYECVRRSWHSCRHQPMRGTIIQQIFRVVNESHSSATKKNREWQEKLPIVVLKAEEIIYSKANSEGEYMDKDTLWDRVNDAVNTIIRRDESTENRDLLLPCVEAALNLGCVPVRASRSQQHANPRSYLSPRTQDTSPLFPNVADSASNERNPQLVPLHYGNQLTFTRPMVTNSMHLVTETNRRVMQNNSLDNPPTSCNFLSPRVEVP----------PITSKHVHSVYPLYYGTHFRPEMPHVGFKVPTNSNSIIVGTPVFPSIQEPAKLGCLQNFFSCESVRNSSKRLRQVDFRNNHEKAPE-TGFDLSLRLGLFKDPCDSSEKPSAQDNDNVDLSSSQERSKFSNLSPHQNKEYSFFPMDSSNDWFGFHTSPQNFWGDSANADAAVRKR 387
[Close]
BLAST of XM_017397784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P2M2 ((Histone acetyltransferase {ECO:0000313|EMBL:PSR84522.1}))

HSP 1 Score: 405.601 bits (1041), Expect = 2.266e-137
Identity = 225/412 (54.61%), Postives = 275/412 (66.75%), Query Frame = 0
 
Query:    1 MPRPGPRPYECVRRAWHSDRHQPIRGSIIQQIFRVVNGRHSSATKGNREWQEKLPIVVFKAEEIMYSKANSEVEYMDLETIWDRVNEAINIIIRRDESTETGDLLPPCVEAALNLGCVPVRASRSQRHNNPRTYLSNRTQDTSSLPPKVLDNPTQGRIPTSRPLHYVNQSTVERPVTVNLNNLQSDSNRLAIQNNRSE-PTSSGKFPAAYEKFPSRKKQFLSVEANTSANVGHVYPLHSGTHFQPEVSWPGLKT---SNTVIVGTPVYP-LVEPVKRGFFQNLFPRNEDDNALSRITHLDSRNKQQEVFEQTECDLSLRLGLFSDPCLNRGKGLASDIDIVGLHSSHDRGQQYDLNSTQNREHTFFPTERPHNYLELSTSSRNFEGQVQNAEVATRKR-----SNVEDGPIF 402
            MPRPGPRPYECVRR+WHSDRHQPIRG+IIQQI RVVN  HSSATK NREWQEKLPIVV KAEEI+YSKANSE EYMD +T+WDRVN+A+N IIRRDESTETGDLLPPCVEAALNLGCV VRASRS+RH NPR+YLS RTQ+TS L P + D+ +  R P   PLH  NQ T   P+  N   L + +NR  +QNNR + PT+S  FP+   + P            TS +VG VYPL+ GT F+PE+   G +    SN++IVGTP++P ++EP K    QNL     D N+  RI   D RN  ++  E T  DLSLRLGLF D C +  K LA   D V L SS  R    +L+  QN+E++FFP +  ++     T  +NF G+ +N + A RKR     +N+ D P F
Sbjct:    1 MPRPGPRPYECVRRSWHSDRHQPIRGTIIQQIIRVVNESHSSATKKNREWQEKLPIVVLKAEEIIYSKANSEAEYMDRDTLWDRVNDAVNTIIRRDESTETGDLLPPCVEAALNLGCVLVRASRSERHANPRSYLSPRTQETSPLLPNIADSISNERNPQLVPLHSGNQLTFAGPLVTNSTYLVTKTNRHVMQNNRLDNPTTSCNFPSPRVEVP----------LITSKHVGKVYPLYYGTSFRPEMPRFGFQVPANSNSIIVGTPIFPSILEPAKPVCLQNLVSCESDGNSSKRIGQADFRNNHEKAPE-TGFDLSLRLGLFKDLCDSSEKPLAQVNDNVDLSSSQKRNNFSNLSPHQNKEYSFFPMKPSNDRFGFHTRPQNFWGESENVDAAVRKRKAPASNNLGDQPFF 401
[Close]
BLAST of XM_017397784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0HCN3 ((Uncharacterized protein {ECO:0000313|EMBL:GFZ20856.1}))

HSP 1 Score: 404.445 bits (1038), Expect = 6.449e-137
Identity = 224/412 (54.37%), Postives = 275/412 (66.75%), Query Frame = 0
 
Query:    1 MPRPGPRPYECVRRAWHSDRHQPIRGSIIQQIFRVVNGRHSSATKGNREWQEKLPIVVFKAEEIMYSKANSEVEYMDLETIWDRVNEAINIIIRRDESTETGDLLPPCVEAALNLGCVPVRASRSQRHNNPRTYLSNRTQDTSSLPPKVLDNPTQGRIPTSRPLHYVNQSTVERPVTVNLNNLQSDSNRLAIQNNRSE-PTSSGKFPAAYEKFPSRKKQFLSVEANTSANVGHVYPLHSGTHFQPEVSWPGLKT---SNTVIVGTPVYP-LVEPVKRGFFQNLFPRNEDDNALSRITHLDSRNKQQEVFEQTECDLSLRLGLFSDPCLNRGKGLASDIDIVGLHSSHDRGQQYDLNSTQNREHTFFPTERPHNYLELSTSSRNFEGQVQNAEVATRKR-----SNVEDGPIF 402
            MPRPGPRPYECVRR+WHSDRHQPIRG+IIQQI RVVN  HSSATK NREWQEKLPIVV KAEEI+YSKANSE EYMD +T+WDRVN+A+N IIRRDESTETGDLLPPCVEAALNLGCV VRASRS+RH NPR+YLS RTQ+TS L P + ++ +  R P   PLH  NQ T   P+  N   L + +NR  +QNNR + PT+S  FP+   + P            TS +VG VYPL+ GT F+PE+   G +    SN++IVGTP++P ++EP K    QNL     D N+  RI   D RN  ++  E T  DLSLRLGLF D C +  K LA   D V L SS  R    +L+  QN+E++FFP +  ++     T  +NF G+ +N + A RKR     +N+ D P F
Sbjct:    1 MPRPGPRPYECVRRSWHSDRHQPIRGTIIQQIIRVVNESHSSATKKNREWQEKLPIVVLKAEEIIYSKANSEAEYMDRDTLWDRVNDAVNTIIRRDESTETGDLLPPCVEAALNLGCVLVRASRSERHANPRSYLSPRTQETSPLLPNIANSISNERNPQLVPLHSGNQLTFAGPLVANSTYLVTKTNRHVMQNNRLDNPTTSCNFPSPRVEVP----------LITSKHVGKVYPLYYGTSFRPEMPRFGFQVPTNSNSIIVGTPIFPSILEPAKPVSLQNLVSCESDGNSSKRIGQADFRNNHEKAPE-TGFDLSLRLGLFKDLCDSSEKPLAQVNDNVDLSSSQKRNNFSNLSPHQNKEYSFFPMKTSNDRFGFHTRPQNFWGESENVDAAVRKRKAPASNNLGDQPFF 401
[Close]
BLAST of XM_017397784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FMX4 ((Uncharacterized protein {ECO:0000313|EMBL:GFY99726.1}))

HSP 1 Score: 404.445 bits (1038), Expect = 7.933e-137
Identity = 225/413 (54.48%), Postives = 278/413 (67.31%), Query Frame = 0
 
Query:    1 MPRPGPRPYECVRRAWHSDRHQPIRGSIIQQIFRVVNGRHSSATKGNREWQEKLPIVVFKAEEIMYSKANSEVEYMDLETIWDRVNEAINIIIRRDESTETGDLLPPCVEAALNLGCVPVRASRSQRHNNPRTYLSNRTQDTSSLPPKVL-DNPTQGRIPTSRPLHYVNQSTVERPVTVNLNNLQSDSNRLAIQNNRSE-PTSSGKFPAAYEKFPSRKKQFLSVEANTSANVGHVYPLHSGTHFQPEVSWPGLKT---SNTVIVGTPVYPLV-EPVKRGFFQNLFPRNEDDNALSRITHLDSRNKQQEVFEQTECDLSLRLGLFSDPCLNRGKGLASDIDIVGLHSSHDRGQQYDLNSTQNREHTFFPTERPHNYLELSTSSRNFEGQVQNAEVATRKRS-----NVEDGPIF 402
            MPRPGPRPYECVRR+WHS RHQP+RG+IIQQIFRVVN  HSSATK NREWQEKLP+VV KAEEI+YSKANSE EYMD +T+WDRVN+A+N IIRRDESTET D L PCVEAALNLGCVPVRASRSQ+H NPR+YLS RTQDTS L P V+ D+ +  R P   PLHY NQ T  RP+  N  +L +++NR  +QNN  + P +S  F +   + P            TS +V  VYPL+ GTHF+PE+   G K    SN++IVGTPV+P + EP K G  QN F      N+  R+  +D RN  ++  E T  DLSLRLGLF DP  +  K LA D D V L SS +R +  +L+  QN+E++FFP +  +++    TS +NF G  +N + A RKR      N+ D P F
Sbjct:    1 MPRPGPRPYECVRRSWHSCRHQPMRGTIIQQIFRVVNESHSSATKKNREWQEKLPVVVLKAEEIIYSKANSEGEYMDKDTLWDRVNDAVNTIIRRDESTETRDFLLPCVEAALNLGCVPVRASRSQQHANPRSYLSPRTQDTSPLLPNVVADSASNERNPQLVPLHYGNQLTFVRPMVTNSMHLVTETNRRVMQNNSLDTPPTSCNFLSPRVEVP----------PITSKHVHSVYPLYYGTHFRPEMPHFGFKVPTNSNSIIVGTPVFPSIQEPAKLGCLQNFFSCESVGNSSKRLRQVDFRNNHEKAPE-TGFDLSLRLGLFKDPFDSSEKPLAQDNDNVDLSSSQERSKFSNLSPHQNKEYSFFPMDSSNDWFGFHTSPQNFWGDSENVDAAVRKRKAPASINLWDRPFF 402
[Close]
BLAST of XM_017397784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AXL8 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8535124.1}))

HSP 1 Score: 397.127 bits (1019), Expect = 1.984e-133
Identity = 224/413 (54.24%), Postives = 274/413 (66.34%), Query Frame = 0
 
Query:    1 MPRPGPRPYECVRRAWHSDRHQPIRGSIIQQIFRVVNGRHSSATKGNREWQEKLPIVVFKAEEIMYSKANSEVEYMDLETIWDRVNEAINIIIRRDESTETGDLLPPCVEAALNLGCVPVRASRSQRHNNPRTYLSNRTQDTSSLPPKVLDNPTQGRIPTSRPLHYVNQSTVERPVTVNLNNLQSDSNRLAIQNNRSEPTSSGKFPAAYEKF-PSRKKQFLSVEANTSANVGHVYPLHSGTHFQP---EVSWPGLKTSNTVIVGTPVYPLV-EPVKRGFFQNLFPRNEDDNALSRITHLDSRNKQQEVFEQTECDLSLRLGLFSDPCLNRGKGLASDIDIVGLHSSHDRGQQYDLNSTQNREHTFFPTERPHNYLELSTSSRNFEGQVQNAEVATRKR-----SNVEDGPIFW 403
            MP+PG RPYECV+RAWHSDRHQP+RGSIIQQIFRV    HS+AT+ N+EWQEKLP VVFKAEEIMYSKANSE EYMDLETIWDR+N++IN IIRRDESTE G+LLPPCVEAALNLGCV VR SRS+R++NPR+YLS R QD    P K+LDN T  R     P H  NQ +  RP   +  +L S+SNR   QNN   PT+S  FP + EKF P    QF  +E+NTS  VG VYPL+ GT FQP    +S    K SNT+IVGTP++  + +P      QNLF  + D+NA +RIT  + R+  ++  E  ECDLSLRLG  SDP    GK    D D V   SS +  +  DL+ T ++E++FFP +  ++  +  TS    EG+ Q  E   RKR     +NVED   FW
Sbjct:   28 MPKPGLRPYECVKRAWHSDRHQPMRGSIIQQIFRVAQESHSAATRRNKEWQEKLPFVVFKAEEIMYSKANSEAEYMDLETIWDRLNDSINTIIRRDESTEAGELLPPCVEAALNLGCVQVRTSRSERNSNPRSYLSPRAQDPGLAPTKILDNTTNERNSCLLPHHSSNQISFARPTITSSTHLVSESNRHLTQNN--NPTASCNFPLSCEKFTPPGNIQFNPMESNTSLYVGSVYPLYCGTDFQPNMSRLSCQNSKNSNTIIVGTPIFSSIPQPAGVVCLQNLFSCDGDENASNRITQSNFRDNHEKAPEM-ECDLSLRLGFPSDPQKIIGKCSFHDNDDVSSSSSQEESRFSDLSPTTSKEYSFFPMKTTNDPFKFHTSKWISEGEDQIVEAGVRKRKAPLNNNVEDRQFFW 437
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BLAST of XM_017397784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DTJ7 ((Uncharacterized protein {ECO:0000313|EMBL:GFS40909.1}))

HSP 1 Score: 390.963 bits (1003), Expect = 1.208e-131
Identity = 221/430 (51.40%), Postives = 272/430 (63.26%), Query Frame = 0
 
Query:    1 MPRPGPRPYECVRRAWHSDRHQPIRGSIIQQIFRVVNGRHSSATKGNREWQEKLPIVVFKAEEIMYSKANSEVEYMDLETIWDRVNEAINIIIRRDESTETGDLLPPCVEAALNLGCVPVRASRSQRHNNPRTYLSNRTQDTSSLPPKVLDNPTQGRIPTSRPLHYVNQSTVERPVTVNLNNLQSDSNRLAIQNN-RSEPTSSGKFPAAYEKFPSRKKQFLSVEANTSANVGHVYPLHSGTHFQPEVSWPGL---KTSNTVIVGTPVYPLV-EPVKRGFFQNLFPRNEDDNALSRITHLDSRNKQQEVFEQTECDLSLRLGLFSDPCLNRGKGLASDIDIVGLHSSHDRGQQYDLNSTQNREHTFFPTERPHNYLELSTSSRNFEGQVQNAEVATRKR-----SNVEDGPIFWQPEPTANHFSGRMRWPG 420
            MPRPGPRPYECV+RAWHSDRHQP+RGSIIQQIFRVV+  HS ATK N+EWQEKLPIVV KAEEIMYSKANSE EYMDL T+W+RVN+A+N IIRR++S ETGDLLPPCVEAALNLGCVPVRASRSQR  NPR+YLS RTQ+                     P H  NQ T  RPV VN  +L ++ NR  +QNN R+ P ++     A E   S   QF+  E+NTS + G VYPL+ GTHFQP +   G    +  N ++VG P++P   E  + G  QNLF    D++AL+R+   DSRN   +  E    DLSLRLGLF  P +   K ++ DI  V   S         L+  Q +E +FFP E  ++      +  N EG+ QNAE A RKR      N++DGP   Q E  +N F+G+M+ PG
Sbjct:    1 MPRPGPRPYECVKRAWHSDRHQPMRGSIIQQIFRVVSESHSPATKKNKEWQEKLPIVVLKAEEIMYSKANSEAEYMDLVTLWNRVNDAVNTIIRREDSAETGDLLPPCVEAALNLGCVPVRASRSQRQANPRSYLSPRTQEP--------------------PSHSGNQLTSARPVAVNSTHL-AEPNRQLMQNNIRTNPATASIL--AVEVPSSSNDQFIPAESNTSLSPGSVYPLYYGTHFQPVMPQLGFQVPRNPNAILVGAPIFPSTSETAQMGRLQNLFSCERDESALNRVGQADSRNNHDKAPE-AGFDLSLRLGLFEGPSMKPDKVISYDIGNVDSSS---------LSPHQTKEFSFFPVETSNDLFGFRENQWNPEGEGQNAEAAVRKRKAPFDDNLDDGPFLPQQELRSNPFTGQMKRPG 397
Match NameStatsDescription
A0A7J7GZW9E-Value: 1.393e-156, PID: 57.04(Uncharacterized protein {ECO:0000313|EMBL:KAF5945... [more]
A0A5B6Z0X7E-Value: 5.482e-145, PID: 55.68(Uncharacterized protein {ECO:0000313|EMBL:MPA3714... [more]
A0A5J4ZVX5E-Value: 4.880e-142, PID: 53.36(Uncharacterized protein {ECO:0000313|EMBL:KAA8523... [more]
A0A438C0F3E-Value: 9.393e-141, PID: 52.64(Uncharacterized protein {ECO:0000313|EMBL:RVW1671... [more]
A0A2R6QRX0E-Value: 8.230e-139, PID: 56.03(2-succinylbenzoate--CoA ligase {ECO:0000313|EMBL:... [more]
A0A2R6P2M2E-Value: 2.266e-137, PID: 54.61(Histone acetyltransferase {ECO:0000313|EMBL:PSR84... [more]
A0A7J0HCN3E-Value: 6.449e-137, PID: 54.37(Uncharacterized protein {ECO:0000313|EMBL:GFZ2085... [more]
A0A7J0FMX4E-Value: 7.933e-137, PID: 54.48(Uncharacterized protein {ECO:0000313|EMBL:GFY9972... [more]
A0A5J5AXL8E-Value: 1.984e-133, PID: 54.24(Uncharacterized protein {ECO:0000313|EMBL:KAA8535... [more]
A0A7J0DTJ7E-Value: 1.208e-131, PID: 51.40(Uncharacterized protein {ECO:0000313|EMBL:GFS4090... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.