Resource Type:
Polypeptide
Name:
XM_017396965.1
Identifier:
XM_017396965.1-protein
Sequence:
MPALINYRRGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHM
FETEKPSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSE
IYQKQEVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATDIRLAAIAV
GTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGD
EGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRI
GNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQAL
SITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLI
TSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSL
HLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCES
LRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFC
EDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAI
ADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSML
SLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDILYGDHTPLLI
Sequence Length:
647
Sequence Checksum:
ac356d65e84095550cfcc63cd3257b5a
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017396965.1, derives from mRNA, XM_017396965.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017396965.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017396965.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BBV5 (F-box domain-containing protein {ECO:0000259|SMART:SM00256})
HSP 1 Score: 1100.89 bits (2846), Expect = 0.000e+0
Identity = 549/660 (83.18%), Postives = 597/660 (90.45%), Query Frame = 0
Match: A0A6L5BBV5 (F-box domain-containing protein {ECO:0000259|SMART:SM00256})
HSP 1 Score: 1100.89 bits (2846), Expect = 0.000e+0
Identity = 549/660 (83.18%), Postives = 597/660 (90.45%), Query Frame = 0
Query: 1 MPALINYR-------RGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETEKPSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQKQ------EVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDILYGDHTPLLI 647
MPAL+NYR GSAC ADSALFFS SNV +VYGPSRKRARI+SPFAF+ MFE ++ SIEILP+ECLFEIFRHLPGGQERSAAACVSK WLM+LSS+RN+EIY+ + EVC+ QD++M + DE KED C+GYLTRCV+GKKATD+RLAAIAVGTATRGGLGKLSIRGSNS RGVTDLGLSAIAHGCPSLRVLSLWNVP +GDEGLLKIA+ECHLLEKLDLSECPS+SNKG++AVAENCPNLTA+TIESC +IGNESL+AIG CCPNLQS+T+KNCPLVGDQGVASLLS+ASAVLSKV+FQAL+ITDFSLAVIGHYGKAITNLVLGGL+ VSQKGFWALGSA GL SLESLLITSC GTTDVSLEAIGKGCPNLK MSLKKCCFVSD+GLVAFVKVAGSLKSLHLEECNRITQ GILG LSNCVSKLKSLA +KCMGIKDL LE P +PCESLRSLTIQNCL FGSASLA++GKLCPQLHHLDLSGLCAITD GLLPLLE C DGLVKVNLSDCLNLTD VV LARLHGETLEVLNL GCRK+TD SLAAIADNC LL+DLD+SKCS++DAGVAALSRGVQHNLQILSLSGCSN+SNKSM SL +LGK LVGLNIQ CNLISSSAIELLLE+LWRCDILYG +T + I
Sbjct: 1 MPALVNYRGDDEFYSAGSACSADSALFFSIGSNV-DVYGPSRKRARISSPFAFESQMFEEKRSSIEILPEECLFEIFRHLPGGQERSAAACVSKQWLMILSSVRNTEIYKSESTQAGEEVCKSAQDVEMTTVDEIKEDDCEGYLTRCVDGKKATDLRLAAIAVGTATRGGLGKLSIRGSNSIRGVTDLGLSAIAHGCPSLRVLSLWNVPSIGDEGLLKIARECHLLEKLDLSECPSISNKGLVAVAENCPNLTAVTIESCRKIGNESLQAIGRCCPNLQSLTIKNCPLVGDQGVASLLSAASAVLSKVRFQALNITDFSLAVIGHYGKAITNLVLGGLQNVSQKGFWALGSARGLQSLESLLITSCRGTTDVSLEAIGKGCPNLKQMSLKKCCFVSDNGLVAFVKVAGSLKSLHLEECNRITQFGILGTLSNCVSKLKSLAFVKCMGIKDLALETPTLTPCESLRSLTIQNCLAFGSASLAIVGKLCPQLHHLDLSGLCAITDDGLLPLLESCVDGLVKVNLSDCLNLTDNVVAALARLHGETLEVLNLEGCRKVTDASLAAIADNCSLLSDLDVSKCSISDAGVAALSRGVQHNLQILSLSGCSNVSNKSMPSLGKLGKNLVGLNIQLCNLISSSAIELLLENLWRCDILYGVNTSVPI 659
BLAST of XM_017396965.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AM40 ((Putative EIN3-binding F-box protein 1-like {ECO:0000313|EMBL:MPA57862.1}))
HSP 1 Score: 936.021 bits (2418), Expect = 0.000e+0
Identity = 477/655 (72.82%), Postives = 547/655 (83.51%), Query Frame = 0
Match: A0A5B7AM40 ((Putative EIN3-binding F-box protein 1-like {ECO:0000313|EMBL:MPA57862.1}))
HSP 1 Score: 936.021 bits (2418), Expect = 0.000e+0
Identity = 477/655 (72.82%), Postives = 547/655 (83.51%), Query Frame = 0
Query: 1 MPALINYRR-------GSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMF-ETEKPSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQKQ---------EVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 638
MPAL+NY GS DS+L S S+V +V+ P RKR+RI++PF F GH F E +KPSIE+LPDECLFEIFR L GGQERSA ACVS WLMLLSS+RNSEI + +V EP DI+M+S +E +E DGYLTRC+EGKKATDIRLAAIAVGTA+RGGLGKLSIRGSNS+RGVT+LGLSAIAHGCPSLRVLSLWNVP +GDEGLL+I++ECHLLEKLDL +CPS+SNKG++A+AE CPNLTA+TIESC IGNESL+AIG CCP LQSIT+++CPLVGDQG+A+L SSAS VL+KVK Q L+ITDFSLAVIGHYGKA+TNL+L GL+ VS+KGFW +G+A GL L SL ITSC GTTD SLEAIGKGC NLK M L+KCCFVS+ GLV+F K AGSL+SL LEECNRITQSGILGALSNC SKLKSL+L+KCMGIKDL LE P+ SPC SLRSL+I+ C GFGSASLA++GKLCPQLHH+DLSGL ITD GLLPLLE CE GLVKVNLS CLNLTDKVV+ ARLHG TLE+LNL GCRKITD SL AIADNC LLNDLD+S+CS+TD+G+AALS G Q NLQILSLSGCS +SNKS+ SL +LGKTLVGLN+Q CN ISSS +ELL+ SLWRCDIL
Sbjct: 1 MPALVNYSGDDEFYSGGSVYSMDSSLLLSIGSHV-DVFCPPRKRSRISAPFVFRGHEFSEEKKPSIEVLPDECLFEIFRRLSGGQERSACACVSNRWLMLLSSVRNSEICKSNGSQGGSALNKVDEPLNDIEMISGEEDQELGSDGYLTRCLEGKKATDIRLAAIAVGTASRGGLGKLSIRGSNSSRGVTNLGLSAIAHGCPSLRVLSLWNVPSIGDEGLLEISRECHLLEKLDLCQCPSISNKGLMAIAEKCPNLTALTIESCSNIGNESLQAIGRCCPKLQSITLRDCPLVGDQGIANLFSSASPVLTKVKLQVLNITDFSLAVIGHYGKAVTNLILSGLQNVSEKGFWVMGNAQGLQRLASLTITSCRGTTDASLEAIGKGCLNLKQMCLRKCCFVSNGGLVSFAKAAGSLESLQLEECNRITQSGILGALSNCGSKLKSLSLVKCMGIKDLALETPILSPCNSLRSLSIRFCPGFGSASLAMVGKLCPQLHHIDLSGLYGITDAGLLPLLESCEAGLVKVNLSGCLNLTDKVVLATARLHGGTLELLNLDGCRKITDASLVAIADNCSLLNDLDVSRCSITDSGIAALSHGEQLNLQILSLSGCSEVSNKSLPSLRKLGKTLVGLNLQHCNSISSSTVELLVHSLWRCDIL 654
BLAST of XM_017396965.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AR22 ((Putative EIN3-binding F-box protein 1-like {ECO:0000313|EMBL:MPA57861.1}))
HSP 1 Score: 936.021 bits (2418), Expect = 0.000e+0
Identity = 477/655 (72.82%), Postives = 547/655 (83.51%), Query Frame = 0
Match: A0A5B7AR22 ((Putative EIN3-binding F-box protein 1-like {ECO:0000313|EMBL:MPA57861.1}))
HSP 1 Score: 936.021 bits (2418), Expect = 0.000e+0
Identity = 477/655 (72.82%), Postives = 547/655 (83.51%), Query Frame = 0
Query: 1 MPALINYR-------RGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETEK-PSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQK---------QEVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 638
MPALINY GS DS+L S ++V +V+ P RKR+RI++PF F GH FE EK PSIE+LPDECLFEIFR LPGGQERSA A VSK WLMLLSS+RNSEI + +V E DI+M+S DE +E DG+LTRC+EGKKATDIRLAA+AVGTA+RGGLGKLSIRGSNS+RGVT+LGLSAIAHGCPSLRVLSLWNVP +GDEGLL+IA+ECHLLEKLDL +CPS+SNKG++A+A+ CPNLTA+TIESC IGNESL+AIG CCP LQSIT+++CPLVGDQG+A+L SSAS VL+KVK Q L+ITDFSLAVIGHYGKA+TNL+L GL+ VS+KGFW +G+A GL L SL ITSC GTTD SLEAIGKGC NLK M L+KCCFVS+ GLV+F K AGSL+SL LEECNRITQSGILGALSNC SKLKSL+L+KCMGIKDL LE P+ SPC SLRSL+I+ C GFGSASLA++GKLCPQLHH+DLSGL ITD GLLPLLE CE GLVKVNLS CLNLTDKVV+ ARLHG TLE+LNL GCRKITD SL AIADNC LLNDLD+S+CS+TD+G+AALS G Q NLQILSLSGCS +SNKS+ SL +LGKTLVGLN+Q CN ISSS +ELL+ SLWRCDIL
Sbjct: 1 MPALINYSGDDEFYSEGSIYSMDSSLLLSFGNHV-DVFCPPRKRSRISAPFLFRGHEFEEEKKPSIEVLPDECLFEIFRRLPGGQERSACASVSKRWLMLLSSVRNSEICRSTDAQGGSAVNKVDESVNDIEMISGDEDRELESDGFLTRCLEGKKATDIRLAAVAVGTASRGGLGKLSIRGSNSSRGVTNLGLSAIAHGCPSLRVLSLWNVPSIGDEGLLEIARECHLLEKLDLCQCPSISNKGLMAIAKKCPNLTALTIESCSNIGNESLQAIGRCCPKLQSITLRDCPLVGDQGIANLFSSASPVLTKVKLQVLNITDFSLAVIGHYGKAVTNLILSGLQNVSEKGFWVMGNAQGLQRLASLTITSCRGTTDASLEAIGKGCLNLKQMCLRKCCFVSNGGLVSFAKAAGSLESLQLEECNRITQSGILGALSNCGSKLKSLSLVKCMGIKDLALETPILSPCNSLRSLSIRFCPGFGSASLAMVGKLCPQLHHIDLSGLYGITDAGLLPLLESCEAGLVKVNLSGCLNLTDKVVLATARLHGGTLELLNLDGCRKITDASLVAIADNCSLLNDLDVSRCSITDSGIAALSHGEQLNLQILSLSGCSEVSNKSLPSLRKLGKTLVGLNLQHCNSISSSTVELLVHSLWRCDIL 654
BLAST of XM_017396965.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7G2R1 (F-box domain-containing protein {ECO:0000259|SMART:SM00256})
HSP 1 Score: 899.042 bits (2322), Expect = 0.000e+0
Identity = 470/648 (72.53%), Postives = 541/648 (83.49%), Query Frame = 0
Match: A0A7J7G2R1 (F-box domain-containing protein {ECO:0000259|SMART:SM00256})
HSP 1 Score: 899.042 bits (2322), Expect = 0.000e+0
Identity = 470/648 (72.53%), Postives = 541/648 (83.49%), Query Frame = 0
Query: 1 MPALINYRR-------GSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETEKPSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQKQ--EVCEPTQDIDMVSADETKE-DSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 638
MPAL+NY GS DS+L S Y P KRARITSPFAF G+MFE PSIE+LPDECLFEIFR LPGGQ RSA+ACVSK WLMLLSS+RNSEI + + +V E + D+DM+S++E E DG LTRC+EGKKATDIRLAAIAVGT++RGGLGKLSIRGSN+TRGVT GLSAIAHGCPSLRVLSLWNVP +GDEGL +IA+ECHLLEKLDL +CPS+SNKG+IA+AEN PNL+ +TIESCP+IGNESL+AI CCP LQSIT+++CPLVGDQGVASLLSSAS+VL+KVK QALS+TDFSLAVIGHYGKA+T+L+L GL+ VS++GFW +G+A GL L SL ITSC GTTDVSLEAIGKGC NLK M L+KCCFVSDSGLVAF K AGSL+SL LEECNRITQSGILGALSN SKLKSLAL+KCMGIKDL +E P SPCESL L I+NC GFGSASLA +GKLCPQLHH+DLSGLC ITD GLLPL+E CE GL+K+NLS C NLTD+VV +ARLHG TLEVLNL GC K+TD +L AI+D+CL+LNDLD+SKCS+TD+G+AALSRG Q NLQILSLS CS +SNKS SL +LGKTLVGLN+Q CN I++S +ELL+ESLWRCDIL
Sbjct: 1 MPALVNYSGDDEFYSGGSVYSMDSSLLCSIG------YCPPSKRARITSPFAFSGNMFEERAPSIEVLPDECLFEIFRRLPGGQSRSASACVSKRWLMLLSSVRNSEICKSKNAKVNESSDDVDMISSNEDLELKGDDGCLTRCLEGKKATDIRLAAIAVGTSSRGGLGKLSIRGSNATRGVTCHGLSAIAHGCPSLRVLSLWNVPCIGDEGLFEIARECHLLEKLDLCQCPSISNKGLIAIAENSPNLSTLTIESCPKIGNESLQAIARCCPKLQSITIRDCPLVGDQGVASLLSSASSVLTKVKLQALSLTDFSLAVIGHYGKALTSLILSGLQNVSERGFWVMGNAQGLERLASLTITSCRGTTDVSLEAIGKGCHNLKQMCLRKCCFVSDSGLVAFAKAAGSLESLQLEECNRITQSGILGALSNGGSKLKSLALVKCMGIKDLSVETPSLSPCESLHCLCIRNCPGFGSASLATVGKLCPQLHHVDLSGLCGITDAGLLPLVESCEAGLIKMNLSGCSNLTDEVVSAIARLHGGTLEVLNLDGCNKVTDATLVAISDHCLILNDLDLSKCSITDSGIAALSRGEQLNLQILSLSSCSKVSNKSTSSLRKLGKTLVGLNLQHCNSINNSMVELLMESLWRCDIL 642
BLAST of XM_017396965.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0HCS8 ((EIN3-binding F box protein 1 {ECO:0000313|EMBL:GFZ20869.1}))
HSP 1 Score: 896.345 bits (2315), Expect = 0.000e+0
Identity = 455/633 (71.88%), Postives = 528/633 (83.41%), Query Frame = 0
Match: A0A7J0HCS8 ((EIN3-binding F box protein 1 {ECO:0000313|EMBL:GFZ20869.1}))
HSP 1 Score: 896.345 bits (2315), Expect = 0.000e+0
Identity = 455/633 (71.88%), Postives = 528/633 (83.41%), Query Frame = 0
Query: 7 YRRGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETEK-PSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQKQEVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 638
Y GS DS+ S S++ +VY P KRARI+S +A ++FE EK PSIE+LPDECLFEIFR L GG+ RSAA CVSK WLM+LSS+RNSEI + + E D+DM S++E E DGYLTRC+EGKKATD+RLAAIAVGTA+RGGLGKLS+RGSNS G+T+LGLSA+A GCPSLRVLSLWN P +GDEGL +IAKECHLLEKLDL +CPS+SNKG+IA+A+N PNL+A+TIESC IGNESL+AI CCPNLQSIT+++CPLVGDQGVASLLSSA + L KVK QALSITDFSLAVIGHYGK +T+L+L GL+ VS+KGFW +G+A GL L SL I+SC GTTD SLEAIGKGC NLK M L+KCCFVSDSGL AF K +GSL+SL LEECNRIT+ GI ALSNC SKLKSLAL+KCMGIKDL LE P+ SPCESLRSL+I++C GFGSASLAV+GKLCP LHH+DLSGLC ITD GLLPL+E CE GLVKVNLS CLNLTDKVV+ +ARLHG TLEVLNL GC K+TD SL AIAD C +LNDLD+SKCS+TD+GVAALSRG Q NLQILS SGCS +SNKS+ SL +LGKTLVGLN+Q CNLIS++ +ELL+E LWRCDIL
Sbjct: 21 YFGGSVYAMDSSPLCSIGSHL-DVYCPPSKRARISSSYASSFNIFEEEKTPSIEVLPDECLFEIFRRLSGGEARSAATCVSKRWLMVLSSVRNSEICKTKN--ESLNDVDMTSSNEDLELESDGYLTRCLEGKKATDVRLAAIAVGTASRGGLGKLSVRGSNSMCGITNLGLSAVARGCPSLRVLSLWNAPSIGDEGLFEIAKECHLLEKLDLCQCPSISNKGLIAIAQNSPNLSALTIESCQNIGNESLQAISRCCPNLQSITIRDCPLVGDQGVASLLSSAPSALKKVKLQALSITDFSLAVIGHYGKTLTSLILSGLQNVSEKGFWVMGTAHGLEKLVSLTISSCRGTTDASLEAIGKGCHNLKQMCLRKCCFVSDSGLAAFAKASGSLESLQLEECNRITELGIFSALSNCGSKLKSLALVKCMGIKDLVLETPLLSPCESLRSLSIRSCPGFGSASLAVVGKLCPHLHHVDLSGLCGITDAGLLPLVESCEAGLVKVNLSGCLNLTDKVVLAVARLHGGTLEVLNLDGCSKVTDASLFAIADYCFVLNDLDLSKCSITDSGVAALSRGEQLNLQILSFSGCSKVSNKSIPSLRKLGKTLVGLNLQHCNLISNNTVELLMEDLWRCDIL 650
BLAST of XM_017396965.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9T867 ((EIN3-binding F-box protein 1-like {ECO:0000313|RefSeq:XP_011078374.1}))
HSP 1 Score: 894.034 bits (2309), Expect = 0.000e+0
Identity = 447/647 (69.09%), Postives = 535/647 (82.69%), Query Frame = 0
Match: A0A6I9T867 ((EIN3-binding F-box protein 1-like {ECO:0000313|RefSeq:XP_011078374.1}))
HSP 1 Score: 894.034 bits (2309), Expect = 0.000e+0
Identity = 447/647 (69.09%), Postives = 535/647 (82.69%), Query Frame = 0
Query: 1 MPALINYRR--------GSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETEKPSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQKQEVCEPTQDIDMVSADETKED-SCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 638
MPAL+N R GS C DS + FS +S+V +Y P RKR+RI+ P+ ++FE ++PSI++LPDECLFEIFR LPGG+ERSA+ACVSK WL +LSS+R+SE + + + I + A ED CDGYLTRCVEGKKATD+RLAAIAVGT++RGGLGKLSIRGSN+ RG+++ GLSAIA GCPSLRVLSLWNVP +GDEG+ +IA+ECH LEKLDL +CPS+SN G+ A+AE+CPNLT++TIESCP IGNESL+AI CP LQSIT+K+C LVGDQG+ASLLSSAS VL+K+K QAL+ITD+S+AVIGHYG +ITNLVL GL+ VSQKGFW +G+A GL +L SL ITSC G TD+SLEA+G+GCPNLKHM L+KCCFVSD+GLVAF K AGSL+SL LEE NRITQ GIL ALS+C+SKLKS++L+KCMGIKDL E P+ SPCESLR L+I++C GFGS SLA++GKLCPQLHHLDLSGLC ITD GLLPLLE CE GL KVNLSDC NLTD+VV+ LARLHGETLE+LNL GC+KITD SLAA+A++C LLNDLD+SKCS+TD GV ALS G QHNLQILS SGCS ISNK +L +LG+TLVGLN+Q CN ISS++IELL E+LWRCDIL
Sbjct: 1 MPALVNIRGDDDFYSEGGSLCSGDSGVVFSISSHVE-IYCPPRKRSRISGPYIVSRNLFEDKRPSIDVLPDECLFEIFRRLPGGRERSASACVSKRWLTVLSSVRSSEFNRSKIPQGQPKTISIEKAVNNTEDIECDGYLTRCVEGKKATDVRLAAIAVGTSSRGGLGKLSIRGSNALRGISNFGLSAIARGCPSLRVLSLWNVPSIGDEGIFEIARECHSLEKLDLCQCPSISNSGLAAIAESCPNLTSLTIESCPNIGNESLQAIAKFCPKLQSITIKDCALVGDQGIASLLSSASTVLTKLKLQALNITDYSVAVIGHYGMSITNLVLCGLQNVSQKGFWVMGNAKGLQTLSSLTITSCKGVTDLSLEAVGRGCPNLKHMCLRKCCFVSDNGLVAFAKAAGSLESLQLEEVNRITQLGILTALSSCISKLKSVSLVKCMGIKDLSTEFPMLSPCESLRCLSIRSCPGFGSTSLAMVGKLCPQLHHLDLSGLCGITDAGLLPLLESCETGLAKVNLSDCSNLTDEVVLALARLHGETLELLNLDGCQKITDASLAALAESCPLLNDLDVSKCSITDTGVVALSHGSQHNLQILSFSGCSMISNKCRPALEQLGRTLVGLNLQHCNSISSNSIELLTENLWRCDIL 646
BLAST of XM_017396965.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4F251 (F-box domain-containing protein {ECO:0000259|Pfam:PF00646})
HSP 1 Score: 888.256 bits (2294), Expect = 0.000e+0
Identity = 462/637 (72.53%), Postives = 539/637 (84.62%), Query Frame = 0
Match: A0A4S4F251 (F-box domain-containing protein {ECO:0000259|Pfam:PF00646})
HSP 1 Score: 888.256 bits (2294), Expect = 0.000e+0
Identity = 462/637 (72.53%), Postives = 539/637 (84.62%), Query Frame = 0
Query: 7 YRRGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETEK-PSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQ----KQEVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 638
Y R S DS+L S +S++ +VY P KRARI+SPFA G+MFE E+ PSI++LPDECLFEIFR LPGGQ RSA+ACVSK WLMLLS IRNSEI + + +V E + D+DM+S +E E DG+LTRC+EGKKATDIRLAAIAVGT++RGGLGKLSIRGSNST VT+ GL+AIAHGCPSLR LSLWNVP +GDEG+ +IAKECHLLEKLDL +CPS+SNKG+IA+AEN PNLTA+TIESCPRIGN+SL+AIG CCP LQSIT+++CP VGDQGVASLLSSAS+VL+KVK Q+LS TDFSLAVIGHYGKAIT+LVL GL+ VS+KGFW +G+A GL L SL ITSC GTTDVSLEAIGKGCPNLK M L+KCCFVSD GLVAF K AGSL++L LEECNR+TQSGIL ALSNC SKLKSLAL+KCMGIKDL E P+ +PCESL SL+I++C GFG ASLAV+GKLCPQLHH+DLSGL ITD+GLLPL+E CE GLV VNLS CLNLTDKVV +ARLH ETLEVLNL GC K+TD SL AIADNCL+LNDLD+SKCS+TD+G+AALS G Q NLQI+SLSGCS +SNKS+ L +LG+ LVGLN+Q CN IS++ +E L+ESLW+CDIL
Sbjct: 15 YSRESIYSLDSSLLCSISSHL-DVYLPPSKRARISSPFASSGNMFEEERTPSIDVLPDECLFEIFRRLPGGQARSASACVSKRWLMLLSGIRNSEICKSKNAQSKVNESSNDVDMISGNEDLEIESDGHLTRCLEGKKATDIRLAAIAVGTSSRGGLGKLSIRGSNSTCRVTNDGLTAIAHGCPSLRALSLWNVPSIGDEGMFEIAKECHLLEKLDLCQCPSISNKGLIAIAENSPNLTALTIESCPRIGNDSLQAIGRCCPKLQSITIRDCPHVGDQGVASLLSSASSVLTKVKLQSLSFTDFSLAVIGHYGKAITSLVLSGLQNVSEKGFWVMGNARGLERLGSLTITSCRGTTDVSLEAIGKGCPNLKQMCLRKCCFVSDIGLVAFAKAAGSLENLQLEECNRLTQSGILSALSNCGSKLKSLALVKCMGIKDLASETPLLTPCESLCSLSIRSCPGFGDASLAVVGKLCPQLHHVDLSGLYGITDSGLLPLVESCEAGLVTVNLSGCLNLTDKVVSIMARLHSETLEVLNLDGCSKVTDASLVAIADNCLVLNDLDVSKCSITDSGIAALSHGDQLNLQIISLSGCSKVSNKSINFLRKLGENLVGLNLQHCNSISTTTVEQLMESLWKCDIL 650
BLAST of XM_017396965.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0E4N9 ((EIN3-binding F box protein 1 {ECO:0000313|EMBL:GFY80909.1}))
HSP 1 Score: 888.256 bits (2294), Expect = 0.000e+0
Identity = 451/634 (71.14%), Postives = 531/634 (83.75%), Query Frame = 0
Match: A0A7J0E4N9 ((EIN3-binding F box protein 1 {ECO:0000313|EMBL:GFY80909.1}))
HSP 1 Score: 888.256 bits (2294), Expect = 0.000e+0
Identity = 451/634 (71.14%), Postives = 531/634 (83.75%), Query Frame = 0
Query: 7 YRRGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETE-KPSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQK-QEVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 638
Y GS DS+L S +S++ ++Y P KRARI+SPFA G MFE E KP IE+LPDECL+EIFR LPGGQ RSA+ACVSKHWL LLSS+RNSEI + +V E + D+DM+S +E E CDGYLTR +EGKKATDIRLAAIAVG A+RGGLGKLSIRGSN RGVT+ GLSAIAH CPSLRVLSLWNVP +GDEG+ +IAKECHLLEKLDL CPS+SNKG+IA+A N PNLTA+TIESC IGNESL+AIG CCP LQSIT+K+CP +GDQGVA L+SS S+ L+KVK Q LS+TDFSLAVIGHYGKA+T+L+ GL+ V++KGFW +G+A GL L +L ITSC GTTDV LEAIGKGC NLK MSL KCCFVSDSGL+AF K AGSL+SL LEECNRITQSGILGAL NC SK+KSLAL+KCMGIKDL LE P SPCESLRSL+I++C GFGS SLA++G LCPQLHHLDLSGLC ITD+GLLPL+E C+ GLVKVNL+ CLNLTD+VV LARLHG TLEVLNL GC K+TD SL A+AD+CL+L+DL++SKCS+TD G+A+LS G Q NLQ+LS+SGC+ +SNKSM L +LG+TLVGLN+QQCN IS++ ++LL+ESLWRCDIL
Sbjct: 15 YSGGSVYSMDSSLLRSISSHL-DMYCPPSKRARISSPFASSGDMFEEERKPFIEVLPDECLYEIFRRLPGGQARSASACVSKHWLALLSSVRNSEICKNVSKVNESSNDVDMLSCEEGLEMECDGYLTRSLEGKKATDIRLAAIAVGLASRGGLGKLSIRGSNPVRGVTNKGLSAIAHSCPSLRVLSLWNVPYVGDEGMYEIAKECHLLEKLDLCRCPSISNKGLIAIAMNSPNLTALTIESCRNIGNESLQAIGSCCPKLQSITIKDCPHIGDQGVARLVSSTSSSLTKVKLQGLSLTDFSLAVIGHYGKALTSLIFSGLQNVTEKGFWVMGNAQGLEKLATLSITSCRGTTDVCLEAIGKGCRNLKQMSLHKCCFVSDSGLIAFAKAAGSLESLQLEECNRITQSGILGALLNCGSKVKSLALVKCMGIKDLDLEKPFLSPCESLRSLSIRSCPGFGSVSLALVGNLCPQLHHLDLSGLCGITDSGLLPLVEGCDSGLVKVNLAGCLNLTDEVVSALARLHGGTLEVLNLDGCVKVTDASLVALADHCLVLSDLNVSKCSITDTGIASLSCGEQLNLQVLSISGCNKVSNKSMPYLRKLGRTLVGLNLQQCNSISTATVDLLVESLWRCDIL 647
BLAST of XM_017396965.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6T3S9 ((EIN3-binding F-box protein 1-like {ECO:0000313|RefSeq:XP_027072993.1}))
HSP 1 Score: 884.789 bits (2285), Expect = 0.000e+0
Identity = 448/655 (68.40%), Postives = 531/655 (81.07%), Query Frame = 0
Match: A0A6P6T3S9 ((EIN3-binding F-box protein 1-like {ECO:0000313|RefSeq:XP_027072993.1}))
HSP 1 Score: 884.789 bits (2285), Expect = 0.000e+0
Identity = 448/655 (68.40%), Postives = 531/655 (81.07%), Query Frame = 0
Query: 1 MPALINY-------RRGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETEK-PSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQK---------QEVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 638
MPAL+NY S C ADS L S + +VY P RKR+R+++P+A D +F+ E+ PSIE LPDECLFEIFR LPG QERSA+ACVSK WLMLLSS+RNSE + +EV + D++M+SAD E C+GYLTR +EGKKATD+RLAAIAVGTA RGGLGKLS+RG NS RGVT+ GLSAIAHGCPSLR LSLWNVP +GDEGL +IA+ECH LEKLDL +CPS+S+KG+ AVA+NCP+L+A+TIESC IGNESL+AIG CP LQSIT+K+CPL+GDQGVA LLSSAS L+KVK Q L+I+DFSLAVIGHYGK+ITNLVL GL+ VSQKGFW +G+A GL L SL ITSC GT+D+SLEA+GKGCPNL+ M L+KCCFVSD+GLVAF K AGSL+ L LEECNRIT++GIL ALSNC SKLKSL+++KCMGIK + E P SPCESLRSL+I++C F S SLA++GKLCPQLHHLDLSGLC ITD LLPLLE CE LVKVNLSDC NLTDKV++ LA LHG TLE+LNL GC+K+TD SL AIAD+CL LNDLD+SKCS+TD+GVAALS GV NLQ+LSLSGCS +SN+S+ L +LG+TLVGLN+Q CN ISSS+IE L+E+LWRCDIL
Sbjct: 1 MPALVNYGGDDDFYAGRSICSADSGLVLS----IADVYCPPRKRSRVSAPYAVDSRLFDKERNPSIETLPDECLFEIFRRLPGAQERSASACVSKRWLMLLSSVRNSEFCRSNSPQEQLATKEVKKTESDVEMISADGDMEIECNGYLTRSLEGKKATDVRLAAIAVGTACRGGLGKLSVRGCNSVRGVTNNGLSAIAHGCPSLRALSLWNVPAIGDEGLFEIARECHSLEKLDLCQCPSISDKGLAAVAKNCPSLSALTIESCSNIGNESLQAIGSYCPKLQSITIKDCPLIGDQGVAGLLSSASVALTKVKLQVLNISDFSLAVIGHYGKSITNLVLTGLQNVSQKGFWVMGNAQGLRMLSSLTITSCRGTSDLSLEALGKGCPNLRQMCLRKCCFVSDNGLVAFAKAAGSLECLQLEECNRITETGILNALSNCNSKLKSLSIVKCMGIKSMPSETPALSPCESLRSLSIRSCPWFNSTSLALVGKLCPQLHHLDLSGLCGITDAALLPLLESCES-LVKVNLSDCGNLTDKVIIALAELHGATLELLNLEGCKKVTDASLVAIADSCLFLNDLDVSKCSITDSGVAALSNGVHLNLQVLSLSGCSMVSNRSLPHLKKLGETLVGLNLQHCNSISSSSIERLVENLWRCDIL 650
BLAST of XM_017396965.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SRQ8 ((EIN3-binding F-box protein 1-like {ECO:0000313|RefSeq:XP_027068633.1}))
HSP 1 Score: 883.248 bits (2281), Expect = 0.000e+0
Identity = 449/655 (68.55%), Postives = 529/655 (80.76%), Query Frame = 0
Match: A0A6P6SRQ8 ((EIN3-binding F-box protein 1-like {ECO:0000313|RefSeq:XP_027068633.1}))
HSP 1 Score: 883.248 bits (2281), Expect = 0.000e+0
Identity = 449/655 (68.55%), Postives = 529/655 (80.76%), Query Frame = 0
Query: 1 MPALINY-------RRGSACCADSALFFSTNSNVHNVYGPSRKRARITSPFAFDGHMFETEK-PSIEILPDECLFEIFRHLPGGQERSAAACVSKHWLMLLSSIRNSEIYQK---------QEVCEPTQDIDMVSADETKEDSCDGYLTRCVEGKKATDIRLAAIAVGTATRGGLGKLSIRGSNSTRGVTDLGLSAIAHGCPSLRVLSLWNVPLMGDEGLLKIAKECHLLEKLDLSECPSVSNKGIIAVAENCPNLTAITIESCPRIGNESLKAIGLCCPNLQSITVKNCPLVGDQGVASLLSSASAVLSKVKFQALSITDFSLAVIGHYGKAITNLVLGGLERVSQKGFWALGSAGGLLSLESLLITSCGGTTDVSLEAIGKGCPNLKHMSLKKCCFVSDSGLVAFVKVAGSLKSLHLEECNRITQSGILGALSNCVSKLKSLALLKCMGIKDLGLENPVSSPCESLRSLTIQNCLGFGSASLAVLGKLCPQLHHLDLSGLCAITDTGLLPLLEFCEDGLVKVNLSDCLNLTDKVVVDLARLHGETLEVLNLTGCRKITDESLAAIADNCLLLNDLDISKCSVTDAGVAALSRGVQHNLQILSLSGCSNISNKSMLSLAELGKTLVGLNIQQCNLISSSAIELLLESLWRCDIL 638
MPAL+NY S C ADS L S + +VY P RKR+R+++P+A D +F E+ PSIE LPDECLFEIFR LPG QERSA+ACVSK WLMLLSS+RNSE + +EV + D++M SAD E C+GYLTR +EGKKATD+RLAAIAVGTA RGGLGKLS+RG NS RGVT+ GLSAIAHGCPSLR LSLWNVP +GDEGL +IA+ECH LEKLDL +CPS+S+KG+ AVA+NCPNL+A+TIESC IGNESL+AIG CP LQSIT+K+CPL+GDQGVA LLSSAS L+KVKFQ L+I+DFSLAVIGHYGK+ITNLVL GL+ VSQKGFW +G+A GL L SL ITSC GT+D+SLEA+GKGCPNL+ M L+KCCFVSD+GLVAF K AGSL+ L LEECNRIT++GIL ALSNC SKLKSL+++KCMGIK + E P SPCESLRSL+I++C F S SLA++GKLCPQLHHLDLSGLC ITD LLPLLE CE LVKVNLSDC LTDKV++ LA LHG TLE+LNL GC+K+TD SL AIAD+CL LNDLD+SKCS+TD+GVAALS GV NLQ+LSLSGCS +SN+S+ L +LG+TLVGLN+Q CN ISSS+IE L+E+LWRCDIL
Sbjct: 1 MPALVNYGGDDDFYTGRSICSADSGLVLS----IADVYCPPRKRSRVSAPYAVDSRLFNKERNPSIETLPDECLFEIFRRLPGAQERSASACVSKRWLMLLSSVRNSEFCRSNSPQEQLATKEVKKTESDVEMNSADGDMEIQCNGYLTRSLEGKKATDVRLAAIAVGTACRGGLGKLSVRGCNSVRGVTNNGLSAIAHGCPSLRALSLWNVPAIGDEGLFEIARECHSLEKLDLCQCPSISDKGLAAVAKNCPNLSALTIESCSNIGNESLQAIGSYCPKLQSITIKDCPLIGDQGVAGLLSSASVALTKVKFQVLNISDFSLAVIGHYGKSITNLVLTGLQNVSQKGFWVMGNAQGLQMLSSLTITSCRGTSDLSLEALGKGCPNLRQMCLRKCCFVSDNGLVAFAKAAGSLECLQLEECNRITETGILNALSNCNSKLKSLSIVKCMGIKSMPSETPALSPCESLRSLSIRSCPWFNSTSLALVGKLCPQLHHLDLSGLCGITDAALLPLLESCES-LVKVNLSDCGILTDKVIIALAELHGATLELLNLEGCKKVTDASLVAIADSCLFLNDLDVSKCSITDSGVAALSNGVHLNLQVLSLSGCSMVSNRSLPHLKKLGETLVGLNLQHCNSISSSSIERLVENLWRCDIL 650
| Match Name | Stats | Description |
|---|---|---|
| A0A6L5BBV5 | E-Value: 0.000e+0, PID: 83.18 | F-box domain-containing protein {ECO:0000259|SMART... [more] |
| A0A5B7AM40 | E-Value: 0.000e+0, PID: 72.82 | (Putative EIN3-binding F-box protein 1-like {ECO:0... [more] |
| A0A5B7AR22 | E-Value: 0.000e+0, PID: 72.82 | (Putative EIN3-binding F-box protein 1-like {ECO:0... [more] |
| A0A7J7G2R1 | E-Value: 0.000e+0, PID: 72.53 | F-box domain-containing protein {ECO:0000259|SMART... [more] |
| A0A7J0HCS8 | E-Value: 0.000e+0, PID: 71.88 | (EIN3-binding F box protein 1 {ECO:0000313|EMBL:GF... [more] |
| A0A6I9T867 | E-Value: 0.000e+0, PID: 69.09 | (EIN3-binding F-box protein 1-like {ECO:0000313|Re... [more] |
| A0A4S4F251 | E-Value: 0.000e+0, PID: 72.53 | F-box domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A7J0E4N9 | E-Value: 0.000e+0, PID: 71.14 | (EIN3-binding F box protein 1 {ECO:0000313|EMBL:GF... [more] |
| A0A6P6T3S9 | E-Value: 0.000e+0, PID: 68.40 | (EIN3-binding F-box protein 1-like {ECO:0000313|Re... [more] |
| A0A6P6SRQ8 | E-Value: 0.000e+0, PID: 68.55 | (EIN3-binding F-box protein 1-like {ECO:0000313|Re... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |