Resource Type:
Polypeptide
Name:
XM_017397048.1
Identifier:
XM_017397048.1-protein
Sequence:
TNECLIAVLSAHRGGTSIKQGGWIKLKSPKSLRVGDTRGIQTCKLNIPLR
PTRLSAISNADDGKPALSVAEEHIITSQTLQNEADTWLSGWSPPRHLWRA
LSVFILAGQVIIRILKGKVHWKNTLQQLERVGPKSVGVCLLTATFVGMAF
AIQFVREFTRLGLNRSIGGVLALAFARELSPVITSIVIAGRIGSAFAAEL
GTMQVSEQTDTLRVLGANPVDYMVTPRVIASCITLPLLTLLCFTVGMSAS
ALLADGVYGISINIILDSARRALSSWDIISAMLKSLVFGLIISIVSCGWG
ITTSEGAKGVGESTTSAVVISLVGIFVADFILSYFFFQGAGNSLRNVV
Sequence Length:
348
Sequence Checksum:
9c2c41fc6895c6d64d3ef3ac36c63a88
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017397048.1, derives from mRNA, XM_017397048.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017397048.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017397048.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6I493 ((Uncharacterized protein {ECO:0000313|EMBL:CCB61808.1}))
HSP 1 Score: 508.449 bits (1308), Expect = 8.045e-180
Identity = 253/334 (75.75%), Postives = 288/334 (86.23%), Query Frame = 0
Match: F6I493 ((Uncharacterized protein {ECO:0000313|EMBL:CCB61808.1}))
HSP 1 Score: 508.449 bits (1308), Expect = 8.045e-180
Identity = 253/334 (75.75%), Postives = 288/334 (86.23%), Query Frame = 0
Query: 19 KQGGWIKLK----SPKSLRVGDTRGIQTCKLNIPLRPTRLSAISNADDGKPALSVAEEHIITSQTLQNEADTWLSGWSPPRHLWRALSVFILAGQVIIRILKGKVHWKNTLQQLERVGPKSVGVCLLTATFVGMAFAIQFVREFTRLGLNRSIGGVLALAFARELSPVITSIVIAGRIGSAFAAELGTMQVSEQTDTLRVLGANPVDYMVTPRVIASCITLPLLTLLCFTVGMSASALLADGVYGISINIILDSARRALSSWDIISAMLKSLVFGLIISIVSCGWGITTSEGAKGVGESTTSAVVISLVGIFVADFILSYFFFQGAGNSLRNVV 348
K GW+K+K SP RV T QTCK +IP++ TRL +I +ADDG P++SV+EE+ T+ +E ++ LS WSPPR+LWR LSVFI+AGQVIIRIL GKVHW NTLQQLERVGP+SVGVC+LTA FVGMAF IQFVREFTRLGLNRS+GGVLALAF+RELSPV+TSIV+AGRIGSAFAAELGTMQVSEQTDTLRVLG NPVDY+VTPRVIASCI LP LTLLCFTVGM++SALLAD VYGISINIILDSA+RAL+SWDIISAM+KS+ FG IIS VSC WG+TT GAKGVGESTTSAVVISLVGIF+ADF LSY FFQGAG++L+N V
Sbjct: 19 KVDGWMKMKTSNLSPFLGRVSFTGKSQTCKFHIPVQRTRLFSIPSADDGHPSVSVSEENSDTNHAFNHEEESLLSKWSPPRYLWRGLSVFIMAGQVIIRILTGKVHWVNTLQQLERVGPRSVGVCILTAAFVGMAFTIQFVREFTRLGLNRSVGGVLALAFSRELSPVVTSIVVAGRIGSAFAAELGTMQVSEQTDTLRVLGTNPVDYLVTPRVIASCIALPFLTLLCFTVGMASSALLADSVYGISINIILDSAQRALNSWDIISAMIKSVAFGGIISTVSCAWGVTTMGGAKGVGESTTSAVVISLVGIFIADFALSYCFFQGAGDALKNCV 352
BLAST of XM_017397048.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AAB9 ((Uncharacterized protein {ECO:0000313|EMBL:MPA52888.1}))
HSP 1 Score: 509.22 bits (1310), Expect = 1.253e-179
Identity = 251/340 (73.82%), Postives = 292/340 (85.88%), Query Frame = 0
Match: A0A5B7AAB9 ((Uncharacterized protein {ECO:0000313|EMBL:MPA52888.1}))
HSP 1 Score: 509.22 bits (1310), Expect = 1.253e-179
Identity = 251/340 (73.82%), Postives = 292/340 (85.88%), Query Frame = 0
Query: 16 TSIKQGGWIKLKSPKS-------LRVGDTRGIQTCKLNIPLRPTRLSAISNADDGKPALSVAEEHIITSQTLQNEADTWLSGWSPPRHLWRALSVFILAGQVIIRILKGKVHWKNTLQQLERVGPKSVGVCLLTATFVGMAFAIQFVREFTRLGLNRSIGGVLALAFARELSPVITSIVIAGRIGSAFAAELGTMQVSEQTDTLRVLGANPVDYMVTPRVIASCITLPLLTLLCFTVGMSASALLADGVYGISINIILDSARRALSSWDIISAMLKSLVFGLIISIVSCGWGITTSEGAKGVGESTTSAVVISLVGIFVADFILSYFFFQGAGNSLRNVV 348
+S +Q W+K+K+P S R+ T G Q CK +P+R TRL I N DDG P SV++E+ T+ TL +EA+T LS WSPPR+LWR LSV ILAGQVI+R+LKGKVHW+NTLQQLERVGPKSVGVCLLT+ FVGMAF IQFVREFTRLGL RS+GGVLALAF+RELSPV+TSIV+AGRIGSAFAAELGTMQVSEQTDTLRVLG++PVDY+VTPRVIASC+ LP LTL+CF+VGM++SALLAD VYGISINIILDSA+RAL+SWDIISAM+KS VFG IIS+VSC WG+TT GAKGVGESTTSAVV+SLVGIF+ADF+LSY FFQGAG+SL+N V
Sbjct: 53 SSTEQHVWMKIKTPNSSPLAGTVRRIEFTGGAQICKFPVPVRQTRLFVILNTDDGHPHASVSKEN--TNHTLNHEAETLLSKWSPPRYLWRGLSVLILAGQVIVRVLKGKVHWRNTLQQLERVGPKSVGVCLLTSAFVGMAFTIQFVREFTRLGLTRSVGGVLALAFSRELSPVVTSIVVAGRIGSAFAAELGTMQVSEQTDTLRVLGSDPVDYLVTPRVIASCVALPFLTLMCFSVGMASSALLADSVYGISINIILDSAQRALNSWDIISAMIKSQVFGGIISVVSCAWGVTTLGGAKGVGESTTSAVVLSLVGIFIADFVLSYCFFQGAGDSLKNCV 390
BLAST of XM_017397048.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4TRZ2 ((Uncharacterized protein {ECO:0000313|EMBL:ESR56187.1}))
HSP 1 Score: 499.59 bits (1285), Expect = 2.214e-176
Identity = 245/333 (73.57%), Postives = 287/333 (86.19%), Query Frame = 0
Match: V4TRZ2 ((Uncharacterized protein {ECO:0000313|EMBL:ESR56187.1}))
HSP 1 Score: 499.59 bits (1285), Expect = 2.214e-176
Identity = 245/333 (73.57%), Postives = 287/333 (86.19%), Query Frame = 0
Query: 16 TSIKQGGWIKLKSPKSLRVGDTRGIQTCKLNIPLRPTRLSAISNADDGKPALSVAEEHIITSQTLQNEADTWLSGWSPPRHLWRALSVFILAGQVIIRILKGKVHWKNTLQQLERVGPKSVGVCLLTATFVGMAFAIQFVREFTRLGLNRSIGGVLALAFARELSPVITSIVIAGRIGSAFAAELGTMQVSEQTDTLRVLGANPVDYMVTPRVIASCITLPLLTLLCFTVGMSASALLADGVYGISINIILDSARRALSSWDIISAMLKSLVFGLIISIVSCGWGITTSEGAKGVGESTTSAVVISLVGIFVADFILSYFFFQGAGNSLRNVV 348
+ +K G++K K S T + TCK +P R TRL AI N DDG P++S+ EE+ IT+ +EA+++LS WSPP++LWR LSV +LAGQVIIRI+KGK+HW+NTLQQLERVGP+SVGVCLLT+ FVGMAF IQFVREFTRLGLNRS+GGVLALAF+RELSPV+T+IV+AGRIGSAFAAELGTMQVSEQTDTLRVLG +PVDY+VTPRVIASCI LP LTL+CFT+GM++SA+L+DGVYGISINIILDSA+RAL SWDIISAM+KS VFG IISIVSC WG+TT GAKGVGESTTSAVVISLVGIF+ADF LSY FFQGAG+SL+N V
Sbjct: 18 SCLKPNGFVKTKISSSSSFSFTARVPTCKFLVPARHTRLFAIPNTDDGHPSVSMMEENKITNHAPGSEAESFLSKWSPPQYLWRGLSVPVLAGQVIIRIIKGKIHWRNTLQQLERVGPRSVGVCLLTSAFVGMAFTIQFVREFTRLGLNRSVGGVLALAFSRELSPVVTAIVVAGRIGSAFAAELGTMQVSEQTDTLRVLGTDPVDYLVTPRVIASCIALPFLTLMCFTLGMASSAILSDGVYGISINIILDSAQRALRSWDIISAMIKSQVFGAIISIVSCAWGVTTIGGAKGVGESTTSAVVISLVGIFIADFALSYCFFQGAGDSLKNCV 350
BLAST of XM_017397048.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6Q984 ((Putative ABC transporter permease MalE {ECO:0000313|EMBL:PRQ30714.1}))
HSP 1 Score: 499.204 bits (1284), Expect = 3.981e-176
Identity = 251/342 (73.39%), Postives = 283/342 (82.75%), Query Frame = 0
Match: A0A2P6Q984 ((Putative ABC transporter permease MalE {ECO:0000313|EMBL:PRQ30714.1}))
HSP 1 Score: 499.204 bits (1284), Expect = 3.981e-176
Identity = 251/342 (73.39%), Postives = 283/342 (82.75%), Query Frame = 0
Query: 10 SAHRGGTSIKQGGWIKLKSPKSLRVGDTRGI----QTCKLNIPLRPTRLSAISNADDGKPALSVAEEHIITSQTLQNEADTWLSGWSPPRHLWRALSVFILAGQVIIRILKGKVHWKNTLQQLERVGPKSVGVCLLTATFVGMAFAIQFVREFTRLGLNRSIGGVLALAFARELSPVITSIVIAGRIGSAFAAELGTMQVSEQTDTLRVLGANPVDYMVTPRVIASCITLPLLTLLCFTVGMSASALLADGVYGISINIILDSARRALSSWDIISAMLKSLVFGLIISIVSCGWGITTSEGAKGVGESTTSAVVISLVGIFVADFILSYFFFQGAGNSLRNV 347
S RG S+K GW KL+ P S + + + QTCKL PL+ TRL A+ N DDG P + V E+ T+ +E +T S WSPPRHLWR LS FILAGQVIIR LKGKVHWKNTLQQL RVGP S GVCLLTA FVGMAF IQFVREFTRLGL+R++GGVLALAFARELSPV+TSIV+AGRIGSAFAAELGTMQVSEQTDTLRVLGANPVDY+VTPRVIA+CI LP LTL+CFTVGM++SALLADG+YG+SINIIL+SARRAL WDIISAM+KS FG IISIVSC WG+TT GAKGVGESTTSAVVISLVGIF+ADF+LSYFFFQG G+SL+N+
Sbjct: 14 SYRRG--SVKPDGWNKLQIPYSSQRAEKVVLIGRPQTCKLLRPLKETRLCAVPNTDDGHPPVPVLEDSN-TNHAPTSEGETLFSKWSPPRHLWRGLSAFILAGQVIIRTLKGKVHWKNTLQQLRRVGPNSAGVCLLTAAFVGMAFTIQFVREFTRLGLSRAVGGVLALAFARELSPVVTSIVVAGRIGSAFAAELGTMQVSEQTDTLRVLGANPVDYLVTPRVIATCIALPFLTLMCFTVGMASSALLADGIYGVSINIILESARRALKPWDIISAMIKSQAFGAIISIVSCAWGVTTMGGAKGVGESTTSAVVISLVGIFIADFVLSYFFFQGVGDSLKNL 352
BLAST of XM_017397048.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7HVG5 ((Uncharacterized protein {ECO:0000313|EMBL:TXG60778.1}))
HSP 1 Score: 498.819 bits (1283), Expect = 2.269e-175
Identity = 248/329 (75.38%), Postives = 281/329 (85.41%), Query Frame = 0
Match: A0A5C7HVG5 ((Uncharacterized protein {ECO:0000313|EMBL:TXG60778.1}))
HSP 1 Score: 498.819 bits (1283), Expect = 2.269e-175
Identity = 248/329 (75.38%), Postives = 281/329 (85.41%), Query Frame = 0
Query: 18 IKQGGWIKLKSPKSLRVGDTRGIQTCKLNIPLRPTRLSAISNADDGKPALSVAEEHIITSQTLQNEADTWLSGWSPPRHLWRALSVFILAGQVIIRILKGKVHWKNTLQQLERVGPKSVGVCLLTATFVGMAFAIQFVREFTRLGLNRSIGGVLALAFARELSPVITSIVIAGRIGSAFAAELGTMQVSEQTDTLRVLGANPVDYMVTPRVIASCITLPLLTLLCFTVGMSASALLADGVYGISINIILDSARRALSSWDIISAMLKSLVFGLIISIVSCGWGITTSEGAKGVGESTTSAVVISLVGIFVADFILSYFFFQGAGNSLRN 346
+K +K+ S +G T I TC +P++ TRL AI + DDG P +SV +E+ T+ +E + +LS WSPP+HLWR LSV +LAGQVIIRI+KGKVHW+NTLQQLERVGPKSVGVCLLT+ FVGMAF IQFVREFTRLGLNRS+GGVLALAFARELSPV+TSIV+AGRIGSAFAAELGTMQVSEQTDTLRVLGANPVDY+VTPRVIASC+ LP LTL+CFTVGM++SALLAD VYGISINIILDSA+RAL SWDIISAM+KS VFG IISIVSC WG+TT GAKGVGESTTSAVVISLVGIFVADF LSY FFQGAG+SL+N
Sbjct: 69 VKPNKCVKVSLLHSSPIGFTGRIPTCNFRLPVQKTRLFAIPSTDDGHPTVSVVDENTNTNHAPSSEVE-FLSNWSPPQHLWRGLSVLVLAGQVIIRIIKGKVHWRNTLQQLERVGPKSVGVCLLTSAFVGMAFTIQFVREFTRLGLNRSVGGVLALAFARELSPVVTSIVVAGRIGSAFAAELGTMQVSEQTDTLRVLGANPVDYLVTPRVIASCVALPFLTLMCFTVGMASSALLADSVYGISINIILDSAQRALRSWDIISAMIKSQVFGAIISIVSCAWGVTTIGGAKGVGESTTSAVVISLVGIFVADFALSYCFFQGAGDSLKN 396
BLAST of XM_017397048.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AUY2 ((protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic {ECO:0000313|RefSeq:XP_021290805.1, ECO:0000313|RefSeq:XP_021290806.1}))
HSP 1 Score: 496.893 bits (1278), Expect = 2.435e-175
Identity = 249/333 (74.77%), Postives = 280/333 (84.08%), Query Frame = 0
Match: A0A6J1AUY2 ((protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic {ECO:0000313|RefSeq:XP_021290805.1, ECO:0000313|RefSeq:XP_021290806.1}))
HSP 1 Score: 496.893 bits (1278), Expect = 2.435e-175
Identity = 249/333 (74.77%), Postives = 280/333 (84.08%), Query Frame = 0
Query: 16 TSIKQGGWIKLKSPKSLRVGDTRGIQTCKLNIPLRPTRLSAISNADDGKPALSVAEEHIITSQTLQNEADTWLSGWSPPRHLWRALSVFILAGQVIIRILKGKVHWKNTLQQLERVGPKSVGVCLLTATFVGMAFAIQFVREFTRLGLNRSIGGVLALAFARELSPVITSIVIAGRIGSAFAAELGTMQVSEQTDTLRVLGANPVDYMVTPRVIASCITLPLLTLLCFTVGMSASALLADGVYGISINIILDSARRALSSWDIISAMLKSLVFGLIISIVSCGWGITTSEGAKGVGESTTSAVVISLVGIFVADFILSYFFFQGAGNSLRNVV 348
SIK GW+KL S R+G T Q+ + P+ TRL ISN DDG V EE T+ +E +T+ S WSPPR+LWR LSV +LAGQVIIR LKGKVHWKNTLQQLERVGPKSVGVCLLT+ FVGMAF IQFVREFTRLGLNRS+GGVLALAF+RELSPV+TS+V+AGRIGSAFAAELGTMQVSEQTDTLRVLG+NPVDY+VTPRVIAS + LP LTL+CFT+GM++SALLADGVYGISINIILDSA+RAL SWDIISAM+KS VFG+IISIVSC WG+TT GAKGVGESTTSAVVISLVGIF+ADF LSY FFQGAG+SL+N V
Sbjct: 18 NSIKSDGWMKLGGWNSSRLGVTARGQSLRFLAPIHKTRLFVISNTDDGHQYAPVLEEDNNTNHAPCSEPETFFSKWSPPRYLWRGLSVLVLAGQVIIRTLKGKVHWKNTLQQLERVGPKSVGVCLLTSAFVGMAFTIQFVREFTRLGLNRSVGGVLALAFSRELSPVVTSVVVAGRIGSAFAAELGTMQVSEQTDTLRVLGSNPVDYLVTPRVIASSLALPFLTLMCFTMGMASSALLADGVYGISINIILDSAQRALQSWDIISAMIKSQVFGMIISIVSCAWGVTTMGGAKGVGESTTSAVVISLVGIFMADFALSYCFFQGAGDSLKNCV 350
BLAST of XM_017397048.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A059C6L0 ((Uncharacterized protein {ECO:0000313|EMBL:KCW73831.1}))
HSP 1 Score: 496.893 bits (1278), Expect = 3.287e-175
Identity = 244/335 (72.84%), Postives = 280/335 (83.58%), Query Frame = 0
Match: A0A059C6L0 ((Uncharacterized protein {ECO:0000313|EMBL:KCW73831.1}))
HSP 1 Score: 496.893 bits (1278), Expect = 3.287e-175
Identity = 244/335 (72.84%), Postives = 280/335 (83.58%), Query Frame = 0
Query: 17 SIKQGGWIKLKSPKSLRVGDT----RGIQTCKLNIPLRPTRLSAISNADDGKPALSVAEEHIITSQTLQNEADTWLSGWSPPRHLWRALSVFILAGQVIIRILKGKVHWKNTLQQLERVGPKSVGVCLLTATFVGMAFAIQFVREFTRLGLNRSIGGVLALAFARELSPVITSIVIAGRIGSAFAAELGTMQVSEQTDTLRVLGANPVDYMVTPRVIASCITLPLLTLLCFTVGMSASALLADGVYGISINIILDSARRALSSWDIISAMLKSLVFGLIISIVSCGWGITTSEGAKGVGESTTSAVVISLVGIFVADFILSYFFFQGAGNSLRNV 347
SI+ GW++ K P S+++ +GIQ K +P T+L+A+ N DDG ++S EE + E DTW S WSPPR+LWR LSV ILAGQVIIR LKGK+HW+NTLQQLERVGPKSVGVCLLT+ FVGMAF IQFVREFTRLGLNR++GGVLALAF+RELSPV+TSIV+AGR+GSAFAAELGTMQVSEQTDTLRVLG NPVDY+VTPRVIASC+ LP LTL+CFTVGM++SALLAD VYG+SINIILDSA+RAL SWDIISAM+KS VFG IISIVSC WG+TT GAKGVGESTTSAVVISLVGIFVADF LSY FFQGAG+SL+ +
Sbjct: 21 SIQLHGWMQTKLPSSVQLVKKLKIRKGIQHYKFILPREETKLAAVPNTDDGHLSVSTLEEEANKNNAFFVEVDTWFSKWSPPRYLWRGLSVLILAGQVIIRTLKGKLHWRNTLQQLERVGPKSVGVCLLTSAFVGMAFTIQFVREFTRLGLNRAVGGVLALAFSRELSPVVTSIVVAGRVGSAFAAELGTMQVSEQTDTLRVLGTNPVDYLVTPRVIASCVALPFLTLMCFTVGMASSALLADSVYGVSINIILDSAQRALRSWDIISAMIKSQVFGAIISIVSCAWGVTTMGGAKGVGESTTSAVVISLVGIFVADFALSYCFFQGAGDSLKKL 355
BLAST of XM_017397048.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5X2I5 ((protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic-like isoform X1 {ECO:0000313|RefSeq:XP_022721947.1, ECO:0000313|RefSeq:XP_022721948.1}))
HSP 1 Score: 496.123 bits (1276), Expect = 5.534e-175
Identity = 252/343 (73.47%), Postives = 283/343 (82.51%), Query Frame = 0
Match: A0A6P5X2I5 ((protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic-like isoform X1 {ECO:0000313|RefSeq:XP_022721947.1, ECO:0000313|RefSeq:XP_022721948.1}))
HSP 1 Score: 496.123 bits (1276), Expect = 5.534e-175
Identity = 252/343 (73.47%), Postives = 283/343 (82.51%), Query Frame = 0
Query: 6 IAVLSAHRGGTSIKQGGWIKLKSPKSLRVGDTRGIQTCKLNIPLRPTRLSAISNADDGKPALSVAEEHIITSQTLQNEADTWLSGWSPPRHLWRALSVFILAGQVIIRILKGKVHWKNTLQQLERVGPKSVGVCLLTATFVGMAFAIQFVREFTRLGLNRSIGGVLALAFARELSPVITSIVIAGRIGSAFAAELGTMQVSEQTDTLRVLGANPVDYMVTPRVIASCITLPLLTLLCFTVGMSASALLADGVYGISINIILDSARRALSSWDIISAMLKSLVFGLIISIVSCGWGITTSEGAKGVGESTTSAVVISLVGIFVADFILSYFFFQGAGNSLRNVV 348
I S+ R +SIK GWIKL S + T Q+ + P R TRL +SN DDG P V EE + +E +T+ S WSPPR+LWR LSV +LAGQVIIR LKGKVHW+NTLQQLERVGPKSVGVCLLT+ FVGMAF IQFVREFTRLGLNRS+GGVLALAF+RELSPV+TSIV+AGRIGSAFAAELGTMQVSEQTDTLRVLG+NPVDY+VTPRVIAS + LP LTL+CFTVGM++SALLADGVYGISINIILDSA+RAL SWDIISAM+KS VFG+IISIVSC WG+TT GAKGVGESTTSAVVISLVGIF+ADF LSY FFQGAG+SL+N V
Sbjct: 10 IFYFSSRR--SSIKSDGWIKLGGWNSSTLSSTGRGQSLRFLTPTRKTRLFVLSNTDDGCPYAPVLEEESSANHAPCSEPETFFSKWSPPRYLWRGLSVLVLAGQVIIRTLKGKVHWRNTLQQLERVGPKSVGVCLLTSAFVGMAFTIQFVREFTRLGLNRSVGGVLALAFSRELSPVVTSIVVAGRIGSAFAAELGTMQVSEQTDTLRVLGSNPVDYLVTPRVIASSLALPFLTLMCFTVGMASSALLADGVYGISINIILDSAQRALRSWDIISAMIKSQVFGMIISIVSCAWGVTTMGGAKGVGESTTSAVVISLVGIFMADFALSYCFFQGAGDSLKNCV 350
BLAST of XM_017397048.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5X0U7 ((protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic-like isoform X2 {ECO:0000313|RefSeq:XP_022721949.1}))
HSP 1 Score: 495.738 bits (1275), Expect = 6.793e-175
Identity = 249/333 (74.77%), Postives = 279/333 (83.78%), Query Frame = 0
Match: A0A6P5X0U7 ((protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic-like isoform X2 {ECO:0000313|RefSeq:XP_022721949.1}))
HSP 1 Score: 495.738 bits (1275), Expect = 6.793e-175
Identity = 249/333 (74.77%), Postives = 279/333 (83.78%), Query Frame = 0
Query: 16 TSIKQGGWIKLKSPKSLRVGDTRGIQTCKLNIPLRPTRLSAISNADDGKPALSVAEEHIITSQTLQNEADTWLSGWSPPRHLWRALSVFILAGQVIIRILKGKVHWKNTLQQLERVGPKSVGVCLLTATFVGMAFAIQFVREFTRLGLNRSIGGVLALAFARELSPVITSIVIAGRIGSAFAAELGTMQVSEQTDTLRVLGANPVDYMVTPRVIASCITLPLLTLLCFTVGMSASALLADGVYGISINIILDSARRALSSWDIISAMLKSLVFGLIISIVSCGWGITTSEGAKGVGESTTSAVVISLVGIFVADFILSYFFFQGAGNSLRNVV 348
+SIK GWIKL S + T Q+ + P R TRL +SN DDG P V EE + +E +T+ S WSPPR+LWR LSV +LAGQVIIR LKGKVHW+NTLQQLERVGPKSVGVCLLT+ FVGMAF IQFVREFTRLGLNRS+GGVLALAF+RELSPV+TSIV+AGRIGSAFAAELGTMQVSEQTDTLRVLG+NPVDY+VTPRVIAS + LP LTL+CFTVGM++SALLADGVYGISINIILDSA+RAL SWDIISAM+KS VFG+IISIVSC WG+TT GAKGVGESTTSAVVISLVGIF+ADF LSY FFQGAG+SL+N V
Sbjct: 17 SSIKSDGWIKLGGWNSSTLSSTGRGQSLRFLTPTRKTRLFVLSNTDDGCPYAPVLEEESSANHAPCSEPETFFSKWSPPRYLWRGLSVLVLAGQVIIRTLKGKVHWRNTLQQLERVGPKSVGVCLLTSAFVGMAFTIQFVREFTRLGLNRSVGGVLALAFSRELSPVVTSIVVAGRIGSAFAAELGTMQVSEQTDTLRVLGSNPVDYLVTPRVIASSLALPFLTLMCFTVGMASSALLADGVYGISINIILDSAQRALRSWDIISAMIKSQVFGMIISIVSCAWGVTTMGGAKGVGESTTSAVVISLVGIFMADFALSYCFFQGAGDSLKNCV 349
BLAST of XM_017397048.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2XM96 ((Uncharacterized protein {ECO:0000313|EMBL:TYJ14892.1}))
HSP 1 Score: 492.656 bits (1267), Expect = 1.049e-173
Identity = 248/334 (74.25%), Postives = 284/334 (85.03%), Query Frame = 0
Match: A0A5D2XM96 ((Uncharacterized protein {ECO:0000313|EMBL:TYJ14892.1}))
HSP 1 Score: 492.656 bits (1267), Expect = 1.049e-173
Identity = 248/334 (74.25%), Postives = 284/334 (85.03%), Query Frame = 0
Query: 16 TSIKQGGWIKLKSPKSLRVG-DTRGIQTCKLNIPLRPTRLSAISNADDGKPALSVAEEHIITSQTLQNEADTWLSGWSPPRHLWRALSVFILAGQVIIRILKGKVHWKNTLQQLERVGPKSVGVCLLTATFVGMAFAIQFVREFTRLGLNRSIGGVLALAFARELSPVITSIVIAGRIGSAFAAELGTMQVSEQTDTLRVLGANPVDYMVTPRVIASCITLPLLTLLCFTVGMSASALLADGVYGISINIILDSARRALSSWDIISAMLKSLVFGLIISIVSCGWGITTSEGAKGVGESTTSAVVISLVGIFVADFILSYFFFQGAGNSLRNVV 348
+SI+ G +KL+ S ++ + RG Q+ + P+R TRL ISNADDG V EE I T+ +E +T+ S WSPP++LWR LSV +LAGQVIIR LKGKVHW+NTLQQLERVGPKSVGVCLLT+ FVGMAF IQFVREFTRLGLNRS+GGVLALAF+RELSPV+TSIV+AGRIGSAFAAELGTMQVSEQTDTLRVLG+NPVDY+VTPRVIAS + LP LTL+CFTVGM++SALLAD VYGISINIILDSA+RAL SWDIISAM+KS VFG+IISIVSC WG+TT GAKGVGESTTSAVVISLVGIF+ADF LSY FFQGAG+SL+N V
Sbjct: 17 SSIRSNGRMKLRGWNSSQLSFNGRG-QSLRFLTPIRKTRLFVISNADDGHAYAPVIEEDINTNHAPSSEPETFFSKWSPPKYLWRGLSVLVLAGQVIIRTLKGKVHWRNTLQQLERVGPKSVGVCLLTSAFVGMAFTIQFVREFTRLGLNRSVGGVLALAFSRELSPVVTSIVVAGRIGSAFAAELGTMQVSEQTDTLRVLGSNPVDYLVTPRVIASSLALPFLTLMCFTVGMASSALLADSVYGISINIILDSAQRALRSWDIISAMIKSQVFGMIISIVSCAWGVTTMGGAKGVGESTTSAVVISLVGIFMADFALSYCFFQGAGDSLKNCV 349
| Match Name | Stats | Description |
|---|---|---|
| F6I493 | E-Value: 8.045e-180, PID: 75.75 | (Uncharacterized protein {ECO:0000313|EMBL:CCB6180... [more] |
| A0A5B7AAB9 | E-Value: 1.253e-179, PID: 73.82 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5288... [more] |
| V4TRZ2 | E-Value: 2.214e-176, PID: 73.57 | (Uncharacterized protein {ECO:0000313|EMBL:ESR5618... [more] |
| A0A2P6Q984 | E-Value: 3.981e-176, PID: 73.39 | (Putative ABC transporter permease MalE {ECO:00003... [more] |
| A0A5C7HVG5 | E-Value: 2.269e-175, PID: 75.38 | (Uncharacterized protein {ECO:0000313|EMBL:TXG6077... [more] |
| A0A6J1AUY2 | E-Value: 2.435e-175, PID: 74.77 | (protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplas... [more] |
| A0A059C6L0 | E-Value: 3.287e-175, PID: 72.84 | (Uncharacterized protein {ECO:0000313|EMBL:KCW7383... [more] |
| A0A6P5X2I5 | E-Value: 5.534e-175, PID: 73.47 | (protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplas... [more] |
| A0A6P5X0U7 | E-Value: 6.793e-175, PID: 74.77 | (protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplas... [more] |
| A0A5D2XM96 | E-Value: 1.049e-173, PID: 74.25 | (Uncharacterized protein {ECO:0000313|EMBL:TYJ1489... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |