Resource Type:
Polypeptide
Name:
XM_017396960.1
Identifier:
XM_017396960.1-protein
Sequence:
MASRKRSLSNDVDSNALHKEWDEASCPICMDHPHNAVLLLCSSYNKGCRS
YICDTSYRHSNCLDRFKKLKAQDENSTSPPALLPRDLHRDTRNNTSDSTS
VRAQNLIPNNAIASEDISGRSIESRSNVASRYSGRPAGDMEDGGSDVSRR
IVPAEINDGNSSEPRSKLRCPLCRGDVLGWQVVEEARKYLNTKSRSCSRE
TCSFSGSYGELRRHARRIHPSARPSDIDPIREQAWRHLENQRDYGDIVSA
IRTAMPGAVVFGDYVIENGERAPGERGRGSGERDGPWWTTFFLFQMLGSM
DHAADRRSGRSRDSTRFRRSNGSGRRYLWGRNLLGAHDDDDDDDDNDSDV
NILSDTNEDVSPIPRRRRRLTRYRSNEDRS
Sequence Length:
380
Sequence Checksum:
c13f67e1cfeab7fbb39220ddd92cae2f
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017396960.1, derives from mRNA, XM_017396960.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017396960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017396960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AZV5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA60763.1}))
HSP 1 Score: 460.685 bits (1184), Expect = 6.754e-160
Identity = 254/394 (64.47%), Postives = 295/394 (74.87%), Query Frame = 0
Match: A0A5B7AZV5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA60763.1}))
HSP 1 Score: 460.685 bits (1184), Expect = 6.754e-160
Identity = 254/394 (64.47%), Postives = 295/394 (74.87%), Query Frame = 0
Query: 1 MASRKRSLSNDVDSNALHKEWDEASCPICMDHPHNAVLLLCSSYNKGCRSYICDTSYRHSNCLDRFKKLKAQDENSTSPPALLPRDLHRDTRNNTSD------STSVRAQ-----NLIPNNAIASEDISGRSIESRSNVASRYSGRPAGDMEDGGSDVSRRIVPAEINDGNS-SEPRSKLRCPLCRGDVLGWQVVEEARKYLNTKSRSCSRETCSFSGSYGELRRHARRIHPSARPSDIDPIREQAWRHLENQRDYGDIVSAIRTAMPGAVVFGDYVIENGERAPGERGRGSGERDGPWWTTFFLFQMLGSMDHAADRRSGRSRDSTRFRRSNG--SGRRYLWGRNLLGAHDDDDDDDDNDSDVNILSDTNEDVSPIPRRRRRLTRYRSNEDRS 380
MASRKRS+ ND D +ALHKEWDEASCPICMDHPHNAVLLLCSS+ KGCRSYICDTSYRHSNCLDRFKKL+A + NS SPP+LLP + H NTSD +TSV + NL N + S + G ES + A R+ G +E G S+ V E N+ S S+ R LRCPLCRG VLGW+VVEEARKYLN K RSCS E+CSF G+Y ELRRHARR+HP+ARP+DIDP R+QAWRHLE+QR+YGDIV+AIR+AMPGA+V GDYVIENGER PG+R RGSGE +GP W+ FFLF M+GSMD A+ R GRSR TR RRS SGRR+LWG NLLG DDDD+DD+D D+NILSD ED S IPRRRR+LT+ RSNED+S
Sbjct: 1 MASRKRSMPNDSDIHALHKEWDEASCPICMDHPHNAVLLLCSSHEKGCRSYICDTSYRHSNCLDRFKKLRANNRNSPSPPSLLPANQHSSV--NTSDRNLGLRTTSVLTEANENLNLREINTVPSVRLLGGRGESGIHEADRHLEMQEGMLETGDSESLWGRVDLEENNAESLSDSRLSLRCPLCRGTVLGWEVVEEARKYLNLKPRSCSHESCSFLGNYRELRRHARRVHPTARPADIDPSRQQAWRHLEHQREYGDIVTAIRSAMPGAIVLGDYVIENGERPPGDRERGSGEVNGP-WSAFFLFHMIGSMDQVAEPRGGRSRAWTRHRRSTVALSGRRFLWGENLLGLQHDDDDEDDDDFDLNILSDMGEDASSIPRRRRQLTQSRSNEDQS 391
BLAST of XM_017396960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AVR7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA60762.1}))
HSP 1 Score: 443.736 bits (1140), Expect = 3.270e-153
Identity = 256/394 (64.97%), Postives = 299/394 (75.89%), Query Frame = 0
Match: A0A5B7AVR7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA60762.1}))
HSP 1 Score: 443.736 bits (1140), Expect = 3.270e-153
Identity = 256/394 (64.97%), Postives = 299/394 (75.89%), Query Frame = 0
Query: 1 MASRKRSLSNDVDSNALHKEWDEASCPICMDHPHNAVLLLCSSYNKGCRSYICDTSYRHSNCLDRFKKLKAQDENSTSPPALLPRDLHRDTRNNTSD------STSVRAQ-----NLIPNNAIASEDISGRSIESRSNVASRYSGRPAGDMEDGGSDVSRRIVPAEINDGNS-SEPRSKLRCPLCRGDVLGWQVVEEARKYLNTKSRSCSRETCSFSGSYGELRRHARRIHPSARPSDIDPIREQAWRHLENQRDYGDIVSAIRTAMPGAVVFGDYVIENGERAPGERGRGSGERDGPWWTTFFLFQMLGSMDHAADRRSGRSRDSTRFRRSNG--SGRRYLWGRNLLGAHDDDDDDDDNDSDVNILSDTNEDVSPIPRRRRRLTRYRSNEDRS 380
MASRKRS+SND D +ALHKEWDEASCPICMDHPHNAVLLLCSS+ KGCRSYICDTSYRHSNCLDRFKKL+A + NS SPP+LLP + H NTSD +TSV + NL N + S + G ES + A R+ G +E G S+ V E N+ S S+ R LRCPLCRG VLGW+VVEEARKYLN K RSCS E+CSF G+Y ELRRHARR+HP+ARP+DIDP R+QAWRHLE+QR+YGDIV+AIR+AMPGA+V GDYVIENG+R PG+R RGSGE +GPWWTTFFLFQM+GSM+ A+RR GRSR TR RRS G SGRR+LWG N L DDDDDD++D D+N+ S+ ED SPIPRRRRRLTR RS+ED+S
Sbjct: 1 MASRKRSMSNDSDIHALHKEWDEASCPICMDHPHNAVLLLCSSHEKGCRSYICDTSYRHSNCLDRFKKLRANNRNSPSPPSLLPANQHSSV--NTSDRNLGLRTTSVLTEANENLNLREINTVPSVRLLGGRGESGIHEADRHLEMQEGMLETGDSESLWGRVDLEENNAESLSDSRLSLRCPLCRGTVLGWEVVEEARKYLNLKPRSCSHESCSFLGNYRELRRHARRVHPTARPADIDPSRQQAWRHLEHQREYGDIVTAIRSAMPGAIVLGDYVIENGDRLPGDRERGSGEVNGPWWTTFFLFQMIGSMEPVAERRGGRSRAWTRHRRSTGALSGRRFLWGEN-LLGLQDDDDDDEDDLDLNVSSEMAEDASPIPRRRRRLTRSRSDEDQS 391
BLAST of XM_017396960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AXE0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA60765.1}))
HSP 1 Score: 441.81 bits (1135), Expect = 2.071e-152
Identity = 255/394 (64.72%), Postives = 298/394 (75.63%), Query Frame = 0
Match: A0A5B7AXE0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA60765.1}))
HSP 1 Score: 441.81 bits (1135), Expect = 2.071e-152
Identity = 255/394 (64.72%), Postives = 298/394 (75.63%), Query Frame = 0
Query: 1 MASRKRSLSNDVDSNALHKEWDEASCPICMDHPHNAVLLLCSSYNKGCRSYICDTSYRHSNCLDRFKKLKAQDENSTSPPALLPRDLHRDTRNNTSD------STSVRAQ-----NLIPNNAIASEDISGRSIESRSNVASRYSGRPAGDMEDGGSDVSRRIVPAEINDGNS-SEPRSKLRCPLCRGDVLGWQVVEEARKYLNTKSRSCSRETCSFSGSYGELRRHARRIHPSARPSDIDPIREQAWRHLENQRDYGDIVSAIRTAMPGAVVFGDYVIENGERAPGERGRGSGERDGPWWTTFFLFQMLGSMDHAADRRSGRSRDSTRFRRSNG--SGRRYLWGRNLLGAHDDDDDDDDNDSDVNILSDTNEDVSPIPRRRRRLTRYRSNEDRS 380
MASRKRS+ ND D +ALHKEWDEASCPICMDHPHNAVLLLCSS+ KGCRSYICDTSYRHSNCLDRFKKL+A + NS SPP+LLP + H NTSD +TSV + NL N + S + G ES + A R+ G +E G S+ V E N+ S S+ R LRCPLCRG VLGW+VVEEARKYLN K RSCS E+CSF G+Y ELRRHARR+HP+ARP+DIDP R+QAWRHLE+QR+YGDIV+AIR+AMPGA+V GDYVIENG+R PG+R RGSGE +GPWWTTFFLFQM+GSM+ A+RR GRSR TR RRS G SGRR+LWG N L DDDDDD++D D+N+ S+ ED SPIPRRRRRLTR RS+ED+S
Sbjct: 1 MASRKRSMPNDSDIHALHKEWDEASCPICMDHPHNAVLLLCSSHEKGCRSYICDTSYRHSNCLDRFKKLRANNRNSPSPPSLLPANQHSSV--NTSDRNLGLRTTSVLTEANENLNLREINTVPSVRLLGGRGESGIHEADRHLEMQEGMLETGDSESLWGRVDLEENNAESLSDSRLSLRCPLCRGTVLGWEVVEEARKYLNLKPRSCSHESCSFLGNYRELRRHARRVHPTARPADIDPSRQQAWRHLEHQREYGDIVTAIRSAMPGAIVLGDYVIENGDRLPGDRERGSGEVNGPWWTTFFLFQMIGSMEPVAERRGGRSRAWTRHRRSTGALSGRRFLWGEN-LLGLQDDDDDDEDDLDLNVSSEMAEDASPIPRRRRRLTRSRSDEDQS 391
BLAST of XM_017396960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5CAI5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8550651.1}))
HSP 1 Score: 408.683 bits (1049), Expect = 2.512e-139
Identity = 242/392 (61.73%), Postives = 289/392 (73.72%), Query Frame = 0
Match: A0A5J5CAI5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8550651.1}))
HSP 1 Score: 408.683 bits (1049), Expect = 2.512e-139
Identity = 242/392 (61.73%), Postives = 289/392 (73.72%), Query Frame = 0
Query: 1 MASRKRSLSNDVDSNALHKEWDEASCPICMDHPHNAVLLLCSSYNKGCRSYICDTSYRHSNCLDRFKKLKAQDENSTSPPALLPRDLHRDT----RN----NTSDSTSVRA-QNLIPNNAIASEDISGRSIESRSNVASRYSGRPAGDMEDGGSDVSRRIVPAEINDGNS-SEPRSKLRCPLCRGDVLGWQVVEEARKYLNTKSRSCSRETCSFSGSYGELRRHARRIHPSARPSDIDPIREQAWRHLENQRDYGDIVSAIRTAMPGAVVFGDYVIENGERAPGERGRGSGERDGPWWTTFFLFQMLGSMDHAADRRSGRSRDSTRFRRSNG--SGRRYLWGRNLLGAHDDDDDDDDNDSDVNILSDTNEDVSPIPRRRRRLTRYRSNEDRS 380
MA+RKRS+SND D +ALHKEWDE SCPICMDHPHNAVLLLCSS+ KGCRSYICDTSYRHSNCLDR++KL+A ++NS PP+L+P + H RN NT T V NL + +AS + G + E+ A R+ G E G SD +V E N S SE RCPLCRG VLGW+VVEEARKYLN KSRSCSRE+CSF G+Y ELR HARR+HP+ARP+DIDP R QAW+ LE+QR+YGD+VSAIR+AMPGA+V GDYVIENG+R PG+R RGSGE +GP FF+FQM+GSMD A+ R GRSR TR RRS S RR+LWG NLLG DD+D+D+D+D D+NILSD ED SP+PRRRRRLT+ RS+ED+S
Sbjct: 1 MATRKRSMSNDSDIHALHKEWDEVSCPICMDHPHNAVLLLCSSHEKGCRSYICDTSYRHSNCLDRYRKLRADNKNSLLPPSLVPANQHNSVNTSDRNLGLRNTGVLTEVHGNHNLNEGDTVASVRLPGGAGENGIQEADRHLEIQEGIFETGDSDSLWGMVDLEENSAESLSESGLNFRCPLCRGTVLGWEVVEEARKYLNLKSRSCSRESCSFFGNYRELRGHARRVHPTARPADIDPSRLQAWQQLEHQREYGDMVSAIRSAMPGAIVLGDYVIENGDRLPGDRERGSGEVNGP-PAAFFVFQMIGSMDPLAEPRGGRSRTWTRHRRSTAALSRRRFLWGENLLGLQDDEDEDEDDDFDLNILSDMGEDASPMPRRRRRLTQSRSDEDQS 391
BLAST of XM_017396960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P9ES60 ((uncharacterized protein LOC109020757 {ECO:0000313|RefSeq:XP_035550449.1, ECO:0000313|RefSeq:XP_035550450.1}))
HSP 1 Score: 407.527 bits (1046), Expect = 3.816e-139
Identity = 228/390 (58.46%), Postives = 271/390 (69.49%), Query Frame = 0
Match: A0A6P9ES60 ((uncharacterized protein LOC109020757 {ECO:0000313|RefSeq:XP_035550449.1, ECO:0000313|RefSeq:XP_035550450.1}))
HSP 1 Score: 407.527 bits (1046), Expect = 3.816e-139
Identity = 228/390 (58.46%), Postives = 271/390 (69.49%), Query Frame = 0
Query: 1 MASRKRSLSNDVDSNALHKEWDEASCPICMDHPHNAVLLLCSSYNKGCRSYICDTSYRHSNCLDRFKKLKAQDENSTSPPALLPRDLHRDTRNNTSD--------STSVRAQNLIPNNAIASEDISGRSIESRSNVASRYSGRPAGDMEDGGSDVSRRIVPAE-INDGNSSEPRSKLRCPLCRGDVLGWQVVEEARKYLNTKSRSCSRETCSFSGSYGELRRHARRIHPSARPSDIDPIREQAWRHLENQRDYGDIVSAIRTAMPGAVVFGDYVIENGERAPGERGRGSGERDGPWWTTFFLFQMLGSMDHAADRRSGRSRDSTRFRRSNGSG--RRYLWGRNLLGAHDDDDDDDDNDSDVNILSDTNEDVSPIPRRRRRLTRYRSNEDR 379
MA KR + D D ALHKE DE CPICMDHPHNAVLLLCSS++KGCRSYICDTSYRHSNCLDR+KKL+A NS + P+ LP + H + N+SD S NL N + S G SR+ G +E S+ + V E + NSSE + L+CPLCRG +LGW+VVEEARKYLN K RSCSRE+CSFSG+Y ELRRHARR+HP+ RPSDIDP REQAWRHLE+QR+YGDIVSAIR+A+PGAVV GDY+IENG+R GER G+G+ +GPWWTT FLFQM+GSMD + R+ RSR TR RR+ GS RR+LWG NLLG H +DD+D+D +L ED SP+PRRRRRL R RSNEDR
Sbjct: 1 MAGVKRRMHCDSDICALHKELDEVLCPICMDHPHNAVLLLCSSHDKGCRSYICDTSYRHSNCLDRYKKLRANSRNSPTLPSSLPVNSHNPS--NSSDMNMSTDLNEASENHHNLNLRNTVISAGAPG----GDEREPSRFVEIQEGILETVDSESFQEGVEIEDLGVENSSELKLSLKCPLCRGTILGWEVVEEARKYLNLKKRSCSRESCSFSGNYQELRRHARRVHPTTRPSDIDPSREQAWRHLEHQREYGDIVSAIRSAVPGAVVVGDYIIENGDRLAGERQSGAGDTNGPWWTTLFLFQMIGSMDSVGEPRA-RSRAWTRHRRTAGSSSERRFLWGENLLGLHGNDDNDED------VLRILGEDASPVPRRRRRLARSRSNEDR 377
BLAST of XM_017396960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0IDR6 ((Putative ovule protein {ECO:0000313|EMBL:JAP30782.1}))
HSP 1 Score: 407.527 bits (1046), Expect = 5.835e-139
Identity = 224/372 (60.22%), Postives = 267/372 (71.77%), Query Frame = 0
Match: A0A0V0IDR6 ((Putative ovule protein {ECO:0000313|EMBL:JAP30782.1}))
HSP 1 Score: 407.527 bits (1046), Expect = 5.835e-139
Identity = 224/372 (60.22%), Postives = 267/372 (71.77%), Query Frame = 0
Query: 1 MASRKRSLSNDVDSNALHKEWDEASCPICMDHPHNAVLLLCSSYNKGCRSYICDTSYRHSNCLDRFKKLKAQDENSTSPPALLPRDL---------HRDTRNNTSDSTSVRAQNLIP-NNAIASEDISGRSIES-RSNVASRYSGRPAGDMEDGGSDVSRRIVP-----AEINDGNSSEPRSKLRCPLCRGDVLGWQVVEEARKYLNTKSRSCSRETCSFSGSYGELRRHARRIHPSARPSDIDPIREQAWRHLENQRDYGDIVSAIRTAMPGAVVFGDYVIENGERAPGERGRGSGERDGPWWTTFFLFQMLGSMDHAADRRSGRSRDSTRFRRSNG--SGRRYLWGRNLLGAHDDDDDDDDNDSDVNILS 354
MASRKRS+SNDVD + L+KE D ASCPICMDHPHNAVLLLCSS++KGCRSYICDTSYRHSNCLDRFKKLKA EN +PP + +L H + RN SD T V + IP N +A+ G S E+ SN +R +M++GG S + N NSS+ KL+CP+CRGDVLGW+VVEEARKYLN K RSCSRE+CSF G+Y ELRRHARR HP+ARP+DIDP R++AWR LENQR+Y DIVSA+R+AMPGAVVFGDYVIENG+R ER RGSG +G W +TFFLFQM+GSMD ++ R GRSR +R RRS G S RRY WG NLLG D D+++D+ D D+NILS
Sbjct: 1 MASRKRSMSNDVDMHVLYKELDGASCPICMDHPHNAVLLLCSSHDKGCRSYICDTSYRHSNCLDRFKKLKA--ENRDNPPIMTQGNLDITVETPAEHLELRN-LSDRTVVHGYHDIPVNEVVATGAFPGESEENGNSNRDNRM------EMQEGGLQTSDAVTVWGSSHETANADNSSDSILKLKCPMCRGDVLGWKVVEEARKYLNLKHRSCSRESCSFLGNYRELRRHARRDHPTARPADIDPSRQRAWRRLENQREYDDIVSAVRSAMPGAVVFGDYVIENGDRLSAERERGSGA-NGRWLSTFFLFQMIGSMDPISEARGGRSRALSRHRRSTGPLSRRRYPWGENLLGLQDHDNNEDEGDPDLNILS 362
BLAST of XM_017396960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0IMX1 ((Putative ovule protein {ECO:0000313|EMBL:JAP33690.1}))
HSP 1 Score: 407.142 bits (1045), Expect = 6.437e-139
Identity = 224/372 (60.22%), Postives = 267/372 (71.77%), Query Frame = 0
Match: A0A0V0IMX1 ((Putative ovule protein {ECO:0000313|EMBL:JAP33690.1}))
HSP 1 Score: 407.142 bits (1045), Expect = 6.437e-139
Identity = 224/372 (60.22%), Postives = 267/372 (71.77%), Query Frame = 0
Query: 1 MASRKRSLSNDVDSNALHKEWDEASCPICMDHPHNAVLLLCSSYNKGCRSYICDTSYRHSNCLDRFKKLKAQDENSTSPPALLPRDL---------HRDTRNNTSDSTSVRAQNLIP-NNAIASEDISGRSIES-RSNVASRYSGRPAGDMEDGGSDVSRRIVP-----AEINDGNSSEPRSKLRCPLCRGDVLGWQVVEEARKYLNTKSRSCSRETCSFSGSYGELRRHARRIHPSARPSDIDPIREQAWRHLENQRDYGDIVSAIRTAMPGAVVFGDYVIENGERAPGERGRGSGERDGPWWTTFFLFQMLGSMDHAADRRSGRSRDSTRFRRSNG--SGRRYLWGRNLLGAHDDDDDDDDNDSDVNILS 354
MASRKRS+SNDVD + L+KE D ASCPICMDHPHNAVLLLCSS++KGCRSYICDTSYRHSNCLDRFKKLKA EN +PP + +L H + RN SD T V + IP N +A+ G S E+ SN +R +M++GG S + N NSS+ KL+CP+CRGDVLGW+VVEEARKYLN K RSCSRE+CSF G+Y ELRRHARR HP+ARP+DIDP R++AWR LENQR+Y DIVSA+R+AMPGAVVFGDYVIENG+R ER RGSG +G W +TFFLFQM+GSMD ++ R GRSR +R RRS G S RRY WG NLLG D D+++D+ D D+NILS
Sbjct: 1 MASRKRSMSNDVDMHVLYKELDGASCPICMDHPHNAVLLLCSSHDKGCRSYICDTSYRHSNCLDRFKKLKA--ENRDNPPIMTQGNLDIXVETPAEHLELRN-LSDRTVVHGYHDIPVNEVVATGAFPGESEENGNSNRDNRM------EMQEGGLQTSDAVTVWGSSHETANADNSSDSILKLKCPMCRGDVLGWKVVEEARKYLNLKHRSCSRESCSFLGNYRELRRHARRDHPTARPADIDPSRQRAWRRLENQREYDDIVSAVRSAMPGAVVFGDYVIENGDRLSAERERGSGA-NGRWLSTFFLFQMIGSMDPISEARGGRSRALSRHRRSTGPLSRRRYPWGENLLGLQDHDNNEDEGDPDLNILS 362
BLAST of XM_017396960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1AVP1 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400031451}))
HSP 1 Score: 405.601 bits (1041), Expect = 2.901e-138
Identity = 222/372 (59.68%), Postives = 268/372 (72.04%), Query Frame = 0
Match: M1AVP1 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400031451}))
HSP 1 Score: 405.601 bits (1041), Expect = 2.901e-138
Identity = 222/372 (59.68%), Postives = 268/372 (72.04%), Query Frame = 0
Query: 1 MASRKRSLSNDVDSNALHKEWDEASCPICMDHPHNAVLLLCSSYNKGCRSYICDTSYRHSNCLDRFKKLKAQDENSTSPPALLPRDL---------HRDTRNNTSDSTSVRAQNLIP-NNAIASEDISGRSIES-RSNVASRYSGRPAGDMEDGGSDVSRRIVP-----AEINDGNSSEPRSKLRCPLCRGDVLGWQVVEEARKYLNTKSRSCSRETCSFSGSYGELRRHARRIHPSARPSDIDPIREQAWRHLENQRDYGDIVSAIRTAMPGAVVFGDYVIENGERAPGERGRGSGERDGPWWTTFFLFQMLGSMDHAADRRSGRSRDSTRFRRSNG--SGRRYLWGRNLLGAHDDDDDDDDNDSDVNILS 354
MASRKRS+SNDVD + L+KE D ASCPICMDHPHNAVLLLCSS++KGCRSYICDTSY+HSNCLDRFKKLKA EN +PP + +L H + +N SD T V + IP N +A+ G S E+ SN +R +M++GG S + N NSS+ KL+CP+CRGDVLGW+VVEEARKYLN K RSCSRE+CSF G+Y ELRRHARR HP+ARP+DIDP R++AWR LENQR+Y DIVSA+R+AMPGAVVFGDYVIENG+R GER RGSG +G W +TFFLFQM+GSMD ++ R GRSR +R RRS G S RRY WG NLLG D D+++D+ + D+NILS
Sbjct: 1 MASRKRSMSNDVDMHVLYKELDGASCPICMDHPHNAVLLLCSSHDKGCRSYICDTSYKHSNCLDRFKKLKA--ENRDNPPIMTQGNLDIAVETPAEHLELKN-LSDRTVVHGYHDIPANEVVATGAFPGGSEENGNSNRDNRM------EMQEGGLQTSDAVTVWGSSHETANADNSSDSILKLKCPMCRGDVLGWKVVEEARKYLNLKHRSCSRESCSFLGNYRELRRHARRDHPTARPADIDPSRQRAWRRLENQREYDDIVSAVRSAMPGAVVFGDYVIENGDRLSGERERGSGA-NGRWLSTFFLFQMIGSMDPISEARGGRSRALSRHRRSTGPLSRRRYPWGENLLGLQDHDNNEDEGEPDLNILS 362
BLAST of XM_017396960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7I4K9 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc09g061750.2.1.1}))
HSP 1 Score: 401.364 bits (1030), Expect = 1.237e-136
Identity = 221/372 (59.41%), Postives = 266/372 (71.51%), Query Frame = 0
Match: A0A3Q7I4K9 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc09g061750.2.1.1}))
HSP 1 Score: 401.364 bits (1030), Expect = 1.237e-136
Identity = 221/372 (59.41%), Postives = 266/372 (71.51%), Query Frame = 0
Query: 1 MASRKRSLSNDVDSNALHKEWDEASCPICMDHPHNAVLLLCSSYNKGCRSYICDTSYRHSNCLDRFKKLKAQDENSTSPPALLPRDL---------HRDTRNNTSDSTSVRAQNLIP-NNAIASEDISGRSIES-RSNVASRYSGRPAGDMEDGGSDVSRRIVP-----AEINDGNSSEPRSKLRCPLCRGDVLGWQVVEEARKYLNTKSRSCSRETCSFSGSYGELRRHARRIHPSARPSDIDPIREQAWRHLENQRDYGDIVSAIRTAMPGAVVFGDYVIENGERAPGERGRGSGERDGPWWTTFFLFQMLGSMDHAADRRSGRSRDSTRFRRSNG--SGRRYLWGRNLLGAHDDDDDDDDNDSDVNILS 354
MASRKRS+SNDVD + L+KE D ASCPICMDHPHNAVLLLCSS++KGCRSYICDTSYRHSNCLDRFKKLKA EN +PP + +L H + RN SD T V + IP + +A+ G S E+ SN +R +M++G S + +N NSS+ KL+CP+CRGDVLGW+VVEEARKYLN K RSCSRE+CSF G+Y ELRRHARR HP+ARP+DIDP R++AWR LENQR+Y DIVSA+R+AMPGAVVFGDYVIENG+R ER RGSG +G W +TFFLFQM GSMD ++ R GRSR +R RRS G S RRY WG NLLG D ++++D+ + DVNILS
Sbjct: 1 MASRKRSMSNDVDMHVLYKELDGASCPICMDHPHNAVLLLCSSHDKGCRSYICDTSYRHSNCLDRFKKLKA--ENRDNPPTMTQGNLDIAVEIPAEHLELRN-LSDRTVVHGYHDIPADEVVATGAFPGGSEENGNSNRDNRM------EMQEGALQTSDAVTVWGSSHETVNADNSSDSILKLKCPMCRGDVLGWKVVEEARKYLNLKHRSCSRESCSFLGNYRELRRHARRDHPTARPADIDPSRQRAWRRLENQREYDDIVSAVRSAMPGAVVFGDYVIENGDRLSVERERGSGA-NGRWLSTFFLFQMFGSMDPISEARGGRSRALSRHRRSTGPLSRRRYPWGENLLGLQDHNNNEDEGEPDVNILS 362
BLAST of XM_017396960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2AYF8 ((Uncharacterized protein {ECO:0000313|EMBL:TMW86619.1}))
HSP 1 Score: 399.823 bits (1026), Expect = 5.451e-136
Identity = 220/372 (59.14%), Postives = 266/372 (71.51%), Query Frame = 0
Match: A0A6N2AYF8 ((Uncharacterized protein {ECO:0000313|EMBL:TMW86619.1}))
HSP 1 Score: 399.823 bits (1026), Expect = 5.451e-136
Identity = 220/372 (59.14%), Postives = 266/372 (71.51%), Query Frame = 0
Query: 1 MASRKRSLSNDVDSNALHKEWDEASCPICMDHPHNAVLLLCSSYNKGCRSYICDTSYRHSNCLDRFKKLKAQDENSTSPPALLPRDL---------HRDTRNNTSDSTSVRAQNLIP-NNAIASEDISGRSIES-RSNVASRYSGRPAGDMEDGGSDVSRRIVP-----AEINDGNSSEPRSKLRCPLCRGDVLGWQVVEEARKYLNTKSRSCSRETCSFSGSYGELRRHARRIHPSARPSDIDPIREQAWRHLENQRDYGDIVSAIRTAMPGAVVFGDYVIENGERAPGERGRGSGERDGPWWTTFFLFQMLGSMDHAADRRSGRSRDSTRFRRSNG--SGRRYLWGRNLLGAHDDDDDDDDNDSDVNILS 354
MASRKRS+SNDVD + L+KE D ASCPICMDHPHNAVLLLCSS++KGCRSYICDTSYRHSNCLDRFKKLKA EN +PP + +L H + RN SD T V + IP + +A+ G S E+ SN +R +M++G S + +N NSS+ KL+CP+CRGDVLGW+VVEEARKYLN K RSCSRE+CSF G+Y ELRRHARR HP+ARP+DIDP R++AWR LENQR+Y DIVSA+R+AMPGAVVFGDYVIENG+R +R RGSG +G W +TFFLFQM GSMD ++ R GRSR +R RRS G S RRY WG NLLG D ++++D+ + DVNILS
Sbjct: 1 MASRKRSMSNDVDMHVLYKELDGASCPICMDHPHNAVLLLCSSHDKGCRSYICDTSYRHSNCLDRFKKLKA--ENRDNPPTMTQGNLDIAVEIPAEHLELRN-LSDRTVVHGYHDIPADEVVATGAFPGGSEENGNSNRDNRM------EMQEGALQTSDAVTVWGSSHETVNADNSSDSILKLKCPMCRGDVLGWKVVEEARKYLNLKHRSCSRESCSFLGNYRELRRHARRDHPTARPADIDPSRQRAWRRLENQREYDDIVSAVRSAMPGAVVFGDYVIENGDRLSVDRERGSGA-NGRWLSTFFLFQMFGSMDPISEARGGRSRALSRHRRSTGPLSRRRYPWGENLLGLQDHNNNEDEGEPDVNILS 362
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7AZV5 | E-Value: 6.754e-160, PID: 64.47 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6076... [more] |
| A0A5B7AVR7 | E-Value: 3.270e-153, PID: 64.97 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6076... [more] |
| A0A5B7AXE0 | E-Value: 2.071e-152, PID: 64.72 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6076... [more] |
| A0A5J5CAI5 | E-Value: 2.512e-139, PID: 61.73 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8550... [more] |
| A0A6P9ES60 | E-Value: 3.816e-139, PID: 58.46 | (uncharacterized protein LOC109020757 {ECO:0000313... [more] |
| A0A0V0IDR6 | E-Value: 5.835e-139, PID: 60.22 | (Putative ovule protein {ECO:0000313|EMBL:JAP30782... [more] |
| A0A0V0IMX1 | E-Value: 6.437e-139, PID: 60.22 | (Putative ovule protein {ECO:0000313|EMBL:JAP33690... [more] |
| M1AVP1 | E-Value: 2.901e-138, PID: 59.68 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A3Q7I4K9 | E-Value: 1.237e-136, PID: 59.41 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A6N2AYF8 | E-Value: 5.451e-136, PID: 59.14 | (Uncharacterized protein {ECO:0000313|EMBL:TMW8661... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |