XM_017398307.1

Resource Type: 
Polypeptide
Name: 
XM_017398307.1
Identifier: 
XM_017398307.1-protein
Sequence: 
MASINFNPFGENWFKKPPNPFQPITPFFDSLNPFKPQPKSPLFASITASN
PDTPDPEEKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKK
ENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFR
KEDKKYWRDVPHVIGLDGRPMPRKALTQREADNKFWDFTKQFFFGLWGFQ
QRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMEL
IQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAA
TAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVW
PGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRP
WEVLSVEQAMDQITYSGKWYREPLGSFTTGPPYIQQWNEEMEELFECFIN
LNDEVVSVLKEAMPGFKPFMKKLEADYFERLERRKKIREEKIKNKS
Sequence Length: 
496
Sequence Checksum: 
4b84b7ded0ff67d74d60d9e87e3670d7
View location in JBrowse: 
DCARv2_Chr5:32052745..32055497-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017398307.1, derives from mRNA, XM_017398307.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017398307.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017398307.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251TGY7 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})

HSP 1 Score: 771.541 bits (1991), Expect = 0.000e+0
Identity = 366/503 (72.76%), Postives = 431/503 (85.69%), Query Frame = 0
 
Query:    1 MASINFNPFGENWFKKPPNPFQPIT--PFFDSLNPFKPQPKSPL-FASITASNP------DTPDPEEKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKAL-TQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEVLSVEQAMDQITYSGKWYREPLGSFTTGPPYIQQWNEEMEELFECFINLNDEVVSVLKEAMPGFKPFMKKLEADYFERLERRKKIREEKIK 493
            MASINFNPFGENWFKKPPNP QPI      +SLNPFKP  +S   FA+I+ SNP        PD    KPG Y++ML+Q+YWECENRPD+RH PE++R++NEDP+ EKKENPT+EEIEENE+W  EFR SPVV+FLA+AE++ D +NEMELKEN  P+R EDKKYW+ +PHVIG DGRPMPRKA+ T++E+D+KFWDF KQFFFGLWGF+QRPYPPGRPID AQA+GYKRLEKRYYDFIM++GGW+YKDR+GRTRGP ELIQLKTAWGAGIIDK+TF+WG+D+DEW PIGMIYGMERAVATWEVRLGAAATAF+HKLQKGIPPW PLKGFEKKS KQLQDEAYESK+RDL VLEANDG+WPGVRIPSHALFLWASGSELTSILE DHMPNKYIPKD+R QL KAIPGLRPWEVLSVEQAMDQITY+G+WYREPLG++TTGPPYIQ WNE++E+  + +    + +   L+EA+PGF   + K++A+  E+  RR++  + KI+
Sbjct:    1 MASINFNPFGENWFKKPPNPLQPINLHNLVESLNPFKPHTQSSSPFAAISISNPFKKKTEPEPDSRRPKPGTYKKMLEQYYWECENRPDYRHTPEVERILNEDPIFEKKENPTREEIEENERWLKEFRESPVVKFLARAEEVLDEINEMELKENSEPYRWEDKKYWKSLPHVIGPDGRPMPRKAIKTKKESDDKFWDFAKQFFFGLWGFRQRPYPPGRPIDVAQAVGYKRLEKRYYDFIMRSGGWYYKDRIGRTRGPCELIQLKTAWGAGIIDKYTFIWGDDLDEWVPIGMIYGMERAVATWEVRLGAAATAFIHKLQKGIPPWVPLKGFEKKSRKQLQDEAYESKKRDLAVLEANDGIWPGVRIPSHALFLWASGSELTSILEQDHMPNKYIPKDMRKQLQKAIPGLRPWEVLSVEQAMDQITYNGQWYREPLGAYTTGPPYIQDWNEDVEDFIDSYQQFTELMCEFLEEAIPGFSKVLDKVDAEAEEKFRRRQESGKRKIE 503
[Close]
BLAST of XM_017398307.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6PFX3 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})

HSP 1 Score: 769.615 bits (1986), Expect = 0.000e+0
Identity = 371/503 (73.76%), Postives = 430/503 (85.49%), Query Frame = 0
 
Query:    1 MASINFNPFGENWFKKPPNPFQPITPF--FDSLNPFKPQPKSPL-FASITASNP------DTPDPEEKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKAL-TQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEVLSVEQAMDQITYSGKWYREPLGSFTTGPPYIQQWNEEMEELFECFINLNDEVVSVLKEAMPGFKPFMKKLEADYFERLERRKKIREEKIK 493
            MASINFNPFGENWFKKPPNP QPI  +   +SLNPFKP P+S   FA+I+ SNP       +P+ +  KPG Y++ML+QFYWE ENRPD+RH PE++R++NEDP+ EKKENPTQEEIEENE+W  EFR SPVV+FLA+AE++ D +NEMELKEN  PFR EDKKYW+ +PHVIG DGRPMPRKA+ T++E+D+KFWDF KQFFFGLWGF+QRPYPPGRPID AQAIGYKRLEKRYYDFIM++GGW+YKDR+GRTRGP ELIQLKTAWGAGIIDK+TF+WGEDMDEW PIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPW PLKGFEKKS KQLQDEAYESKRRDL VLEANDG+WPGVRIPSHALFLWASGSELTSILE DHMPNK+IPKD+R QL KAIPGLRPWEVLSVEQAMDQITY G+WYREPLG+FTTGPPYIQ WNE++E+  + +    + +   L+E +PGF   + K++A+   +  RR +  + KI+
Sbjct:    1 MASINFNPFGENWFKKPPNPLQPINLYSLAESLNPFKPHPQSDSPFAAISISNPFNKKPEISPESKRPKPGFYKKMLEQFYWESENRPDYRHTPEVERILNEDPIFEKKENPTQEEIEENERWLKEFRESPVVKFLARAEEVLDEINEMELKENSEPFRWEDKKYWKSIPHVIGPDGRPMPRKAIKTKKESDDKFWDFAKQFFFGLWGFRQRPYPPGRPIDVAQAIGYKRLEKRYYDFIMRSGGWYYKDRIGRTRGPCELIQLKTAWGAGIIDKYTFIWGEDMDEWVPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWVPLKGFEKKSRKQLQDEAYESKRRDLAVLEANDGIWPGVRIPSHALFLWASGSELTSILEQDHMPNKFIPKDMRKQLQKAIPGLRPWEVLSVEQAMDQITYGGEWYREPLGAFTTGPPYIQDWNEDVEDFIDSYQQFTELMCEFLEETIPGFNKVLDKVDAEAEAKYRRRLESGKRKIE 503
[Close]
BLAST of XM_017398307.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9T208 ((protein TIC 56, chloroplastic {ECO:0000313|RefSeq:XP_011077527.2}))

HSP 1 Score: 766.533 bits (1978), Expect = 0.000e+0
Identity = 374/493 (75.86%), Postives = 424/493 (86.00%), Query Frame = 0
 
Query:    1 MASINFNPFGENWF-KKPPNPFQPITPFFDSLNPFKPQPKSPLFASIT---ASNPDTPDPEEKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKAL-TQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEVLSVEQAMDQITYSGKWYREPLGSFTTGPPYIQQWNEEMEELFECFINLNDEVVSVLKEAMPGFKPFMKKLEADYFERLERRKKIR 488
            MASINFNPF +NWF  +P  PF+PI     S+  FKP  K+  FASIT   +  P T DP+E  PGKYRQMLDQFYWECEN PD+RH PE++R++ EDP+ EKKENPTQEEIEENEKWW+EFRSSPVVQFLA+AE+IAD LNE+EL++N  P+RKEDKK W+ VP+VIGLDGRPMPRKA+ +  E+D+KFWDF +QFFFGLWGF+QRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTF+WG+DMDEWAPIGMIYGMERA+ATWEVRLGAAATAFLHKLQKGIPPW PLKG E K+YKQLQ+EAYESK+RDL VLEAN+GVWPGVRIPSHALFLWASGSELTS+LE DHMPNK+IPKDLRLQLA+ IPGLRPWEVLS+EQAMDQITY G+WYREPLGS+TTGPPYI+ WN ++  LFE F  L+      L+  +PGF   M+K+EAD  ER  +RK  R
Sbjct:   58 MASINFNPFNDNWFGNRPKLPFRPIH-LLSSI--FKPHSKNSSFASITNPFSRKPKT-DPDET-PGKYRQMLDQFYWECENLPDYRHTPEVERILQEDPIAEKKENPTQEEIEENEKWWAEFRSSPVVQFLARAEEIADKLNEIELRQNSVPYRKEDKKLWQAVPNVIGLDGRPMPRKAIKSDAESDDKFWDFARQFFFGLWGFRQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFIWGDDMDEWAPIGMIYGMERAIATWEVRLGAAATAFLHKLQKGIPPWVPLKGHEDKTYKQLQEEAYESKKRDLAVLEANNGVWPGVRIPSHALFLWASGSELTSLLEEDHMPNKFIPKDLRLQLAQIIPGLRPWEVLSIEQAMDQITYGGEWYREPLGSYTTGPPYIRAWNRDVLRLFEIFRKLSQRTYDKLERTIPGFSTIMEKVEADAAERDAKRKAKR 545
[Close]
BLAST of XM_017398307.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7PFE4 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})

HSP 1 Score: 766.533 bits (1978), Expect = 0.000e+0
Identity = 370/504 (73.41%), Postives = 432/504 (85.71%), Query Frame = 0
 
Query:    1 MASINFNPFGENWFKKPPNPFQPIT--PFFDSLNPFKPQPKS-PL---FASITASNP----DTPDPEEKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKAL-TQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEVLSVEQAMDQITYSGKWYREPLGSFTTGPPYIQQWNEEMEELFECFINLNDEVVSVLKEAMPGFKPFMKKLEADYFERLERRKKIREEKIK 493
            MASINFNPFGENWFKKPPNP Q I    F DS+NPFK QP+S P    FA+++ SNP      PD +  KPG Y+++L+QFYWE ENRPD+RH PE++R++NEDP+ EKKENPTQEEIEENE+W  EFR SPVV+FLA+AE++ D +NEMELKEN  P+R EDKKYW+ +PHVIG DGRPMPRKA+ T++E+D+KFWDF KQFFFGLWGF+QRPYPPGRPID AQAIGYKRLEKRYYDFIM++GG+FYKDR+GRTRGP ELIQLKTAWGAGIIDK+TF+WG+DMDEW PIGMIYGMERA+ATWEVRLGAAATAF+HKLQKGIPPWAPLKGFEKKS KQLQDEAYESK+RDL VLEANDG+WPGVRIPSHALFLWASGSELTSILE DHMPNKYIPKD+R QL KAIPGLRPWEVLSVEQAMDQITY G+WYREPLG F T PPYI++WNE++EELF+ +    + +   L+ A+PGF   MKK+E++   +  RR +  ++KI+
Sbjct:    1 MASINFNPFGENWFKKPPNPLQSINIHAFSDSINPFKHQPQSDPFSSPFAALSISNPFKKKTEPDSQRPKPGYYKRLLEQFYWESENRPDYRHTPEVERILNEDPIWEKKENPTQEEIEENERWLKEFRESPVVRFLARAEEVMDEINEMELKENSKPYRSEDKKYWQSIPHVIGPDGRPMPRKAIKTRKESDDKFWDFAKQFFFGLWGFRQRPYPPGRPIDVAQAIGYKRLEKRYYDFIMRSGGFFYKDRIGRTRGPCELIQLKTAWGAGIIDKYTFIWGDDMDEWVPIGMIYGMERAIATWEVRLGAAATAFIHKLQKGIPPWAPLKGFEKKSRKQLQDEAYESKKRDLAVLEANDGIWPGVRIPSHALFLWASGSELTSILEQDHMPNKYIPKDMRKQLQKAIPGLRPWEVLSVEQAMDQITYGGEWYREPLGIFRTWPPYIEEWNEDVEELFDSYQQFTELICEFLEVAIPGFDKVMKKVESEAERKFRRRVQSGKKKIE 504
[Close]
BLAST of XM_017398307.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6LQI8 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})

HSP 1 Score: 762.681 bits (1968), Expect = 0.000e+0
Identity = 367/504 (72.82%), Postives = 431/504 (85.52%), Query Frame = 0
 
Query:    1 MASINFNPFGENWFKKPPNPFQPIT--PFFDSLNPFKPQPKS----PLFASITASNP----DTPDPEEKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKAL-TQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEVLSVEQAMDQITYSGKWYREPLGSFTTGPPYIQQWNEEMEELFECFINLNDEVVSVLKEAMPGFKPFMKKLEADYFERLERRKKIREEKIK 493
            MASINFNPFGENWFKKPPNP Q I    F DS+NPFK QP+S      FA+++ SNP      PD +  KPG Y+++L+QFYWE ENRPD+RH PE++R++NEDP+ EKKEN TQEEIEENE+W  EFR SPVV+FLA+AE++ D +NEMELKEN  P+R+EDKKYW+ +PHVIG DGRPMPRKA+ T++E+D+KFWDF KQFFFGLWGF+QRPYPPGRPID AQAIGYKRLEKRYYDFIM++GG+FYKDR+GRTRGP ELIQLKTAWGAGIIDK+TF+WG+DMDEWAPIGMIYGMERA+ATWEVRLGAAATAF+HKLQKGIPPW PLKGFEKKS KQLQDEAYESK+RDL VLEAN+G+WPGVRIPSHALFLWASGSELTSILE DHMPNKYIPKD+R QL KAIPGLRPWEVLSVEQAMDQITY G+WYREPLG F T PPYI++WNE++EEL + +    + +   L+EA+PGF   MKK+E++   +  RR +  ++KI+
Sbjct:    1 MASINFNPFGENWFKKPPNPLQSINIHAFADSINPFKHQPQSDPSSSPFAALSISNPFKKKTEPDSQRPKPGYYKRLLEQFYWESENRPDYRHTPEVERILNEDPIWEKKENLTQEEIEENERWLKEFRESPVVRFLARAEEVMDEINEMELKENSKPYRREDKKYWQSIPHVIGPDGRPMPRKAIKTRKESDDKFWDFAKQFFFGLWGFRQRPYPPGRPIDVAQAIGYKRLEKRYYDFIMRSGGFFYKDRIGRTRGPCELIQLKTAWGAGIIDKYTFIWGDDMDEWAPIGMIYGMERAIATWEVRLGAAATAFIHKLQKGIPPWVPLKGFEKKSRKQLQDEAYESKKRDLAVLEANNGIWPGVRIPSHALFLWASGSELTSILEQDHMPNKYIPKDMRKQLQKAIPGLRPWEVLSVEQAMDQITYGGQWYREPLGIFRTWPPYIEEWNEDVEELVDSYQQFTELICEFLEEAIPGFDKVMKKVESEAEGKFRRRVQSGKKKIE 504
[Close]
BLAST of XM_017398307.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AQ45 ((protein TIC 56, chloroplastic {ECO:0000313|RefSeq:XP_021289010.1}))

HSP 1 Score: 750.74 bits (1937), Expect = 0.000e+0
Identity = 358/501 (71.46%), Postives = 424/501 (84.63%), Query Frame = 0
 
Query:    1 MASINFNPFGENWFKKPPNPFQPIT--PFFDSLNPFKPQPKSPLFASITASN-----PDTPDPEEKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKAL-TQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEVLSVEQAMDQITYSGKWYREPLGSFTTGPPYIQQWNEEMEELFECFINLNDEVVSVLKEAMPGFKPFMKKLEADYFERLERRKKIREEKIK 493
            MASINFNPF E+WF+KP NP QP+      D   P K    SP FASI AS+     P  PD +  KPG Y+QMLDQF+WECEN PD+RH PE++ +++ DPL EKKENPT+EE++ENEKWW +FRSSPV+QFLA+AE+IAD +N MELKEN+ P+R EDKK W+ +PHVIGLDGRPMPRKA+ T++E+D+KFWDFTKQFFFGLWGF+QRPYPPGRPID AQAIGYKRLEKRYYDFIM++GGW+YKDRLGRTRGP ELI LKTAWGAGIIDKHTF+WGEDMDEWAPI M+YG+E A+ATWEVRLGAAATAFLHKLQKGIPPW PLKG EKK+YKQLQ+EA ESKRRDL VL+ANDG+WPGVRIPSHALFLWASGSE+T++LE+DHMPNKYI KDLR +LAKAIPGLRPWEVLSVEQAMD+ITY G+WYREPLG++TTGPPYI+ WN++++ +F  F NL+ +V + L+  +PGF   M+K++AD   R  RRK  RE + K
Sbjct:    1 MASINFNPF-ESWFRKPQNPIQPVNLPSLADQFLP-KTSSNSPNFASINASSLFEKKPKKPDNDSDKPGPYKQMLDQFFWECENLPDYRHTPEVENILSGDPLFEKKENPTEEEVKENEKWWQDFRSSPVIQFLARAEEIADEINRMELKENDEPYRSEDKKLWQALPHVIGLDGRPMPRKAIKTRKESDDKFWDFTKQFFFGLWGFRQRPYPPGRPIDVAQAIGYKRLEKRYYDFIMRSGGWYYKDRLGRTRGPCELITLKTAWGAGIIDKHTFIWGEDMDEWAPIHMVYGLEPAIATWEVRLGAAATAFLHKLQKGIPPWVPLKGHEKKTYKQLQEEAIESKRRDLAVLKANDGIWPGVRIPSHALFLWASGSEMTTLLESDHMPNKYISKDLRRKLAKAIPGLRPWEVLSVEQAMDEITYGGEWYREPLGTYTTGPPYIRHWNKDVKRIFRIFCNLSSQVYNKLERTIPGFNTIMEKVQADAVVRDARRKGKREAQKK 499
[Close]
BLAST of XM_017398307.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UD70 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})

HSP 1 Score: 749.584 bits (1934), Expect = 0.000e+0
Identity = 356/494 (72.06%), Postives = 425/494 (86.03%), Query Frame = 0
 
Query:    1 MASINFN--PFGE-NWFKKPPNPFQPITPFFDSLNPFKPQPKSPLFASIT-ASNPDTPDPEEKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKAL-TQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEVLSVEQAMDQITYSGKWYREPLGSFTTGPPYIQQWNEEMEELFECFINLNDEVVSVLKEAMPGFKPFMKKLEADYFERLERRKKIRE 489
            MAS+NFN  PF + NWFKKP N    +   F++LNPFKPQ  +P FA+++   +P  P  E   PGKY QMLDQFYWECEN PD+RH PE++RL+NEDP+ EK ENPT EE+ EN K W EFR+SPVVQFLA+AE+IA+ +NE+ELKEN TP+RKED+K W+ VP+V+GLDGRPMPRKA+ T+RE+D+KFWDF +QFFFGLW F+QRPYPPGRPID AQAIGYKRLE+RYYDFIM++ GW+YKDRLGRTRGPMELIQLKTAWGAGIIDKHTF+WG+DMDEWAPIGM+YG+ERA+ATWEVR GAAATA LHKLQKG+PPWAPLKG E+K+YKQLQ+EAYESKRRDL VLEAN+GVWPGVRIPSHALFLWASGSELTS+LE DHMPNK+IPKDLR QLAK IPGLRPWEVLSVEQAMDQITY G+WYREPLGS+TTGPPYIQ+WN+++  LF+ F NL+ +V + L+  +PGF   M++++A+  E  E+R++ RE
Sbjct:    1 MASLNFNFNPFNDDNWFKKPIN----LVSLFENLNPFKPQASTPNFAALSFKPSPKKPKNEAANPGKYEQMLDQFYWECENLPDYRHTPEVERLLNEDPVFEKLENPTPEELAENAKRWEEFRASPVVQFLARAEEIANKINELELKENSTPYRKEDRKLWKAVPNVLGLDGRPMPRKAIKTKRESDDKFWDFARQFFFGLWRFRQRPYPPGRPIDVAQAIGYKRLERRYYDFIMRSSGWYYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFIWGDDMDEWAPIGMVYGLERAIATWEVRFGAAATAALHKLQKGMPPWAPLKGHEQKTYKQLQEEAYESKRRDLAVLEANEGVWPGVRIPSHALFLWASGSELTSVLEADHMPNKFIPKDLRYQLAKVIPGLRPWEVLSVEQAMDQITYGGEWYREPLGSYTTGPPYIQEWNKDVRTLFDIFHNLSVQVYNKLERTIPGFSTVMERVQAESIESEEKRREKRE 490
[Close]
BLAST of XM_017398307.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9HZQ0 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})

HSP 1 Score: 744.191 bits (1920), Expect = 0.000e+0
Identity = 358/483 (74.12%), Postives = 408/483 (84.47%), Query Frame = 0
 
Query:    1 MASINFNPFGENWFKKPPN-PFQPITPFFDSLNPFKPQPKSPLFASITASNPDTPDPE---EKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKA-LTQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEVLSVEQAMDQITYSGKWYREPLGSFTTGPPYIQQWNEEMEELFECFINLNDEVVSVLKEAMPGFKPFMKKLEADYF 478
            MASINFNPF ENWF+ PP   FQPI     S+  FKP  K+P FASI+ +    P PE   E KPGKYRQMLDQFYWE EN PD+RH PE++R++ +DP+ EKKENPTQEEIEENEKWW++FR+SPVVQF+  A +I D LNE+EL+EN TP+R ED+K W+ VPHVIGLDGRPMPRKA LT  E+D+KFWDF KQFFFGLWGF+QRPYPPGRPID AQAIGYKRLE+RYYDFIMKT GW+YKDRLGRTRGPMELIQLKTAWGAGIIDK TF+WG+DMDEWAPI MIYGMERA+ATWEVRLGAAATAFLHKLQKGIPPW PLKG E K+YKQLQ+EAYESKRRDL VLEANDGVWPGVRIP HALFLWASGSELTSILE DHMPNKYIPKD+RLQLAK IPGLRPWEVLSVEQAMD+IT+ GKWYREPLG++TTGPPYI+ WN ++  LF+ +  L+      +++ +PGF   M+KL  + +
Sbjct:    1 MASINFNPFNENWFRNPPKVTFQPIN-ILSSV--FKPHSKTPNFASISNTFSRKPKPEPETEGKPGKYRQMLDQFYWESENLPDYRHTPEVERILQDDPVAEKKENPTQEEIEENEKWWAQFRASPVVQFMNLALQIGDKLNELELQENSTPYRSEDEKLWQAVPHVIGLDGRPMPRKAILTHEESDDKFWDFVKQFFFGLWGFRQRPYPPGRPIDVAQAIGYKRLERRYYDFIMKTSGWYYKDRLGRTRGPMELIQLKTAWGAGIIDKDTFIWGDDMDEWAPISMIYGMERAIATWEVRLGAAATAFLHKLQKGIPPWVPLKGHETKTYKQLQEEAYESKRRDLAVLEANDGVWPGVRIPGHALFLWASGSELTSILEEDHMPNKYIPKDIRLQLAKIIPGLRPWEVLSVEQAMDRITFGGKWYREPLGTYTTGPPYIRDWNRDVLRLFKNYRTLSARAFRKIEKEVPGFTKLMEKLRGELY 480
[Close]
BLAST of XM_017398307.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A022QDC4 (GYF_2 domain-containing protein {ECO:0000259|Pfam:PF14237})

HSP 1 Score: 743.806 bits (1919), Expect = 0.000e+0
Identity = 354/504 (70.24%), Postives = 425/504 (84.33%), Query Frame = 0
 
Query:    1 MASINFNPFGENWFKKPPN-PFQPITPFFDSLNPF---KPQPKSPLFASITASNPDTPDPE---EKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKAL-TQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEVLSVEQAMDQITYSGKWYREPLGSFTTGPPYIQQWNEEMEELFECFINLNDEVVSVLKEAMPGFKPFMKKLEADYFERLERRKKIR-EEKIKNK 495
            MASINFNPF +NWF+ PP  PFQ      + L+ F    P  ++P FASI  SNP +  P    +KKPGKYRQMLDQFYWECEN PD+RH PE++R++ EDP+ EKKENPTQEEIEENE+WW++FRS+PVVQFL +AE+IAD LNE+EL+EN  P+RKEDKK W+ VP+++GLDGRPMPRKA+ T+RE+D+KFWDF +QFFFGLWGF+QRPYPPGRPID +QAIGYK+LE RYYDF+M++GGWFYKDRLGR+RGPMELIQLKTAWGAGIIDKHTF+WG+D+DEWAPI M+YGMERA+ATWEVRLGAAATA LHKLQKGI PW PLKG E K+YKQ+Q+EAYESKRRDL VLEANDGVWPG+R PSHALFLWASGSELT++LE DHMPNK+IPKDLR+QL K IPGLRPWEVLS+EQAMD+ITY GKWYREPLGS+TTGPPYI +WN+++  LFE F +L+ +  + L++ +PGF   M K++ D  +R   R+ IR  EK+  K
Sbjct:    1 MASINFNPFNDNWFRNPPKLPFQIQIQSINLLSSFFNPAPSSQTPNFASI--SNPFSKKPNSDPDKKPGKYRQMLDQFYWECENLPDYRHAPEVERILQEDPIAEKKENPTQEEIEENEQWWADFRSNPVVQFLTRAEEIADKLNEIELQENSVPYRKEDKKLWQAVPNIMGLDGRPMPRKAIKTKRESDDKFWDFARQFFFGLWGFRQRPYPPGRPIDVSQAIGYKKLENRYYDFVMRSGGWFYKDRLGRSRGPMELIQLKTAWGAGIIDKHTFIWGDDLDEWAPISMVYGMERAIATWEVRLGAAATACLHKLQKGIAPWVPLKGHEVKTYKQVQEEAYESKRRDLAVLEANDGVWPGMRTPSHALFLWASGSELTTLLEEDHMPNKFIPKDLRVQLQKVIPGLRPWEVLSIEQAMDRITYGGKWYREPLGSYTTGPPYIAEWNKDVMRLFEIFHSLSVQTYNKLEKTIPGFDKIMDKVQEDAAQRAASREAIRAAEKMSGK 502
[Close]
BLAST of XM_017398307.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6ASH6 ((protein TIC 56, chloroplastic {ECO:0000313|RefSeq:XP_022767796.1}))

HSP 1 Score: 743.036 bits (1917), Expect = 0.000e+0
Identity = 357/503 (70.97%), Postives = 416/503 (82.70%), Query Frame = 0
 
Query:    1 MASINFNPFGENWFKKPPNPFQPITPFFDSLNPFKPQPK--SPLFASITASN-----PDTPDPEEKKPGKYRQMLDQFYWECENRPDFRHDPEIDRLMNEDPLVEKKENPTQEEIEENEKWWSEFRSSPVVQFLAQAEKIADMLNEMELKENETPFRKEDKKYWRDVPHVIGLDGRPMPRKAL-TQREADNKFWDFTKQFFFGLWGFQQRPYPPGRPIDAAQAIGYKRLEKRYYDFIMKTGGWFYKDRLGRTRGPMELIQLKTAWGAGIIDKHTFVWGEDMDEWAPIGMIYGMERAVATWEVRLGAAATAFLHKLQKGIPPWAPLKGFEKKSYKQLQDEAYESKRRDLTVLEANDGVWPGVRIPSHALFLWASGSELTSILENDHMPNKYIPKDLRLQLAKAIPGLRPWEVLSVEQAMDQITYSGKWYREPLGSFTTGPPYIQQWNEEMEELFECFINLNDEVVSVLKEAMPGFKPFMKKLEADYFERLERRKKIREEKIKNK 495
            MASINFNPF E+WF+KP NP QPI         F P     SP FASI AS      P   DP   KPG Y+QMLDQF+WECEN PD+RH PE+++++ EDPL EKKENPT+EEI+ENEKWW +FR+SPV+QFL++AE+IAD +N +ELKENE PFRKEDKK W+ VPHVIGLDGRPMPRKA+ T+ E+DNKFWDFTK FF GLWGF+QRPYPPGRPID AQAIGYKRLE+RYYDFIM++GGW+YKDRLGRTRGP ELI LKTAWGAGIIDKHTF+WGEDMDEWAPI M+YG+E A+ATWEVR GAAATAFLHKLQKGIPPW PLKG E+K+YKQLQ+EA ESKRRDL VL+ANDG+WPGVR PSHALFLWASGSE+T++LE+DHMPNKYI KDLR +LAK IPGLRPWEVLSVEQAMD+ITY GKWYREPLGS+TTGPPYI +WN ++++  + F +++  +   L+  +PGFK  MKK+EAD   R  RRK+ RE   K K
Sbjct:    1 MASINFNPF-ESWFRKPQNPIQPIN-LLSLTKSFLPNTSADSPNFASIKASGLLRKKPKKTDPNSDKPGPYKQMLDQFFWECENLPDYRHTPEVEKILKEDPLFEKKENPTEEEIKENEKWWQDFRTSPVIQFLSRAEEIADKINRIELKENEEPFRKEDKKLWQAVPHVIGLDGRPMPRKAIKTREESDNKFWDFTKHFFLGLWGFRQRPYPPGRPIDVAQAIGYKRLERRYYDFIMRSGGWYYKDRLGRTRGPCELITLKTAWGAGIIDKHTFIWGEDMDEWAPIHMVYGLEPAIATWEVRFGAAATAFLHKLQKGIPPWVPLKGHEEKTYKQLQEEAIESKRRDLAVLKANDGIWPGVRTPSHALFLWASGSEMTTLLESDHMPNKYISKDLRRKLAKVIPGLRPWEVLSVEQAMDEITYGGKWYREPLGSYTTGPPYIAEWNRDVQQTLQVFHSVSRALYKKLERTIPGFKAIMKKVEADADARNARRKEEREAYRKAK 501
Match NameStatsDescription
A0A251TGY7E-Value: 0.000e+0, PID: 72.76GYF_2 domain-containing protein {ECO:0000259|Pfam:... [more]
A0A5N6PFX3E-Value: 0.000e+0, PID: 73.76GYF_2 domain-containing protein {ECO:0000259|Pfam:... [more]
A0A6I9T208E-Value: 0.000e+0, PID: 75.86(protein TIC 56, chloroplastic {ECO:0000313|RefSeq... [more]
A0A6S7PFE4E-Value: 0.000e+0, PID: 73.41GYF_2 domain-containing protein {ECO:0000259|Pfam:... [more]
A0A2J6LQI8E-Value: 0.000e+0, PID: 72.82GYF_2 domain-containing protein {ECO:0000259|Pfam:... [more]
A0A6J1AQ45E-Value: 0.000e+0, PID: 71.46(protein TIC 56, chloroplastic {ECO:0000313|RefSeq... [more]
A0A068UD70E-Value: 0.000e+0, PID: 72.06GYF_2 domain-containing protein {ECO:0000259|Pfam:... [more]
A0A2G9HZQ0E-Value: 0.000e+0, PID: 74.12GYF_2 domain-containing protein {ECO:0000259|Pfam:... [more]
A0A022QDC4E-Value: 0.000e+0, PID: 70.24GYF_2 domain-containing protein {ECO:0000259|Pfam:... [more]
A0A6P6ASH6E-Value: 0.000e+0, PID: 70.97(protein TIC 56, chloroplastic {ECO:0000313|RefSeq... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.