XM_017398446.1

Resource Type: 
Polypeptide
Name: 
XM_017398446.1
Identifier: 
XM_017398446.1-protein
Sequence: 
MKTHENKTLGDHPNDGNACQKEIFIPLHMLNSSAGSSQDTPNTKQLRKPY
LLSEMGARNQDISSQDFVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSP
GPSLPKAKTSTKHILPKRSVKYKVSSSDMEKAASLGPGEPSDKPSILRSW
SLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICG
ENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGTQNTKGA
HSHIARSLSVPSLNKLTSTRKMDSFIRVIPSPRTRDRNQTSTTAAAEDDE
NYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIK
WFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFSE
FYRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGF
LAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATF
AGFGVAMGGSIIFFELLKWRRRLHVSSN
Sequence Length: 
528
Sequence Checksum: 
243e802f86f1852fcf4af545b67fb61e
View location in JBrowse: 
DCARv2_Chr5:33518589..33523155-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017398446.1, derives from mRNA, XM_017398446.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017398446.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017398446.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VXS6 ((uncharacterized protein LOC113727776 {ECO:0000313|RefSeq:XP_027107923.1}))

HSP 1 Score: 500.745 bits (1288), Expect = 4.936e-171
Identity = 268/521 (51.44%), Postives = 352/521 (67.56%), Query Frame = 0
 
Query:   10 GDHPNDGNACQKEIFIPLHMLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKV--SSSDMEKAASLGPGEPS----DKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGTQNTKGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRNQ-TSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFSEFYRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELLKWRRR 522
            G   N   AC++E+ IP+  + SS+G +++T N K  RK  L  E+  R  D S  +FVQIKMPP+PT + K+VN +  PSPS+++ N+SPGPS  +AK+S K++LPK S K +     +D++KA++   G  +    +KPS+LRSWSLSKIFTP+M RTSSL                                      PV  V H +SE+  +G        S  +S T+         +TKG   HI+RSLSVP++NK  S ++MDSF RVIP+ PR +D +  TS + A  + EN + DGEDIPEEEAVCRIC +E+CEGGETLK+EC+CKGELALAH+ECAIKWFSIKG KTC+VCK EV+NLPV LLR+QSV+ +NT A     +E+NG    YRVW EVPILVIVS+L YFCFLE+LLV    MG G++A+S+PFSC+LG LA+MTSSTMVK RFVW+YA++QF+LVV+FAH+F+ +VH + +L I+L+TFAGFGVAM GS I  E L+WRR+
Sbjct:   34 GGFSNSTTACEREVVIPMPKVESSSGITEETGNAKNWRKQNLFLEIPTRTMDASCAEFVQIKMPPTPTPTPKRVNFMLTPSPSDSRLNSSPGPSSSRAKSSIKNLLPKLSFKNRNLNPETDIDKASNFDSGSSTTASQEKPSMLRSWSLSKIFTPRMKRTSSL--------------------------------------PVTPVAHLSSESVTDG--------SACSSLTL---------DTKGPQRHISRSLSVPAINKERSIKRMDSFFRVIPTTPRVKDGDSITSVSTAGGNTENSDADGEDIPEEEAVCRICFIELCEGGETLKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKQEVQNLPVTLLRIQSVRCQNTRASRVRNLEING----YRVWHEVPILVIVSMLAYFCFLEQLLV--GKMGTGAIAISLPFSCVLGLLASMTSSTMVKRRFVWVYASVQFALVVLFAHIFYSVVHVQAVLSILLSTFAGFGVAMSGSSIVVEFLRWRRQ 493
[Close]
BLAST of XM_017398446.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UG02 (RING-CH-type domain-containing protein {ECO:0000259|PROSITE:PS51292})

HSP 1 Score: 498.049 bits (1281), Expect = 5.312e-170
Identity = 267/524 (50.95%), Postives = 351/524 (66.98%), Query Frame = 0
 
Query:   10 GDHPNDGNACQKEIFIPLHMLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKV--SSSDMEKAASLGPGEPS----DKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGTQNTKGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRNQ-TSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFSEFYR---VWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELLKWRRR 522
            G   N   AC++E+ IP+  + SS+G +++T N K  RK  L  E+  R  D S  +FVQIKMPP+PT + K+VN +  PSPS+++ N+SPGPS  +AK+S K++LPK S K +     +D++KA++   G  +    +KPS+LRSWSLSKIFTP+M RTSSL                                      PV  V H +SE+  +G        S   S T+         +TKG   HI+RSLSVP++NK  S ++MDSF RVIP+ PR +D +  TS + A  + EN + DGEDIPEEEAVCRIC +E+CEGGETLK+EC+CKGELALAH+ECAIKWFSIKG KTC+VCK EV+NLPV LLR+QSVQ +NT A     +E+NG+ +      VW EVPILVIVS+L YFCFLE+LLV    MG G++A+S+PFSC+LG LA+MTSSTMVK RFVW+YA++QF+LVV+FAH+F+ +VH + +L I+L+TFAGFGVAM GS I  E L+WRR+
Sbjct:   19 GGFSNSTTACEREVVIPMPKVESSSGITEETGNAKNWRKQNLFLEIPTRTMDASCAEFVQIKMPPTPTPTPKRVNFMLTPSPSDSRLNSSPGPSSSRAKSSIKNLLPKLSFKNRNLNPETDIDKASNFDSGSSTTASQEKPSMLRSWSLSKIFTPRMKRTSSL--------------------------------------PVTPVAHLSSESVTDG--------SACTSLTL---------DTKGPQRHISRSLSVPAINKERSIKRMDSFFRVIPTTPRVKDGDSITSVSTAGGNTENSDADGEDIPEEEAVCRICFIELCEGGETLKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKQEVQNLPVTLLRIQSVQCQNTRASRVRNLEINGYRQVIYLGMVWHEVPILVIVSMLAYFCFLEQLLV--GKMGTGAIAISLPFSCVLGLLASMTSSTMVKRRFVWVYASVQFALVVLFAHIFYSVVHVQAVLSILLSTFAGFGVAMSGSSIVVEFLRWRRQ 485
[Close]
BLAST of XM_017398446.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6U8Q7 ((E3 ubiquitin-protein ligase MARCH7-like {ECO:0000313|RefSeq:XP_027086322.1}))

HSP 1 Score: 497.278 bits (1279), Expect = 7.640e-170
Identity = 269/532 (50.56%), Postives = 356/532 (66.92%), Query Frame = 0
 
Query:    4 HENKTLGDHPNDG-----NACQKEIFIPLHMLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKV--SSSDMEKAASLGPGEPS----DKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGTQNTKGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRNQ-TSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFSEFYRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELLKWRRR 522
            H + ++     DG      AC++E+ IP+  + SS+G +++T N K  RK  L  E+  R  D S  +FVQIKMPP+PT + K+VN +  PSPS+++ N+SPGPS  +AK+S K++LPK S K +     +D++KA++L  G  +    +KPS+ RSWSLSKIFTP+M RTSSL                                      PV  V H +SE+  +G        S  +S T+         +TKG   HI+RSLSVP++NK  S ++MDSF RVIP+ PR +D +  TS + A  + EN + DGEDIPEEEAVCRIC +E+CEGGETLK+EC+CKGELALAH+ECAIKWFSIKG KTC+VCK EV+NLPV LLR+QSV+ +NT A     +E+NG    YRVW EVPILVIVS+L YFCFLE+LLV    MG G++A+S+PFSC+LG LA+MTSSTMVK RFVW+YA++QF+LVV+FAH+F+ +VH + +L I+L+TFAGFGVAM GS I  E L+WRR+
Sbjct:    8 HRSTSIKSEVQDGFSNSTTACEREVVIPMPKVESSSGITEETGNAKNWRKQNLFLEIPTRTMDASCAEFVQIKMPPTPTPTPKRVNFMLTPSPSDSRLNSSPGPSSSRAKSSIKNLLPKLSFKNRNLNPETDIDKASNLDSGSSTTASQEKPSMSRSWSLSKIFTPRMKRTSSL--------------------------------------PVTPVAHLSSESITDG--------SACSSLTL---------DTKGPQRHISRSLSVPAINKERSIKRMDSFFRVIPTTPRVKDGDSITSVSTAGGNTENSDADGEDIPEEEAVCRICFIELCEGGETLKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKQEVQNLPVTLLRIQSVRCQNTRASRVRNLEING----YRVWHEVPILVIVSMLAYFCFLEQLLV--GKMGTGAIAISLPFSCVLGLLASMTSSTMVKRRFVWVYASVQFALVVLFAHIFYSVVHVQAVLSILLSTFAGFGVAMSGSSIVVEFLRWRRQ 478
[Close]
BLAST of XM_017398446.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TV34 ((uncharacterized protein LOC105170709 isoform X1 {ECO:0000313|RefSeq:XP_011089894.1}))

HSP 1 Score: 480.33 bits (1235), Expect = 2.704e-163
Identity = 258/519 (49.71%), Postives = 341/519 (65.70%), Query Frame = 0
 
Query:    4 HENKTLGDHPNDGNACQKEIFIPLHMLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKVSSSDMEKAASLGPGE----PSDKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGTQNTKGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRNQTSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFSEFYRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELL 517
             EN+ + +  +  +A +  + +P+  L  S+G + +TPN+K  RK  L  E+  R  ++S Q+FVQIKMPP+PT + K+VN +  PSPS+++ N SP PS  + K+S ++ILPK + K++ SSSD+EKA S+          DKPS+ RSWS SKIFT           P + R +S                            PV  V H+N ++   G++                 N   T +TKGA   I+RSLSVP +NK  + RKMDSF RVIPS PR ++ +   + A   DDEN E +GEDIPEEEAVCRICLVE+CEGGETLK+EC+CKGELALAH+ECAIKWF+IKG KTC++CK EV+NLPV LLR+QS  NRNT       ME+NG    YRVWQEVPILVIVS+L YFCFLE+LLV    MG  ++A+S+PFSC+LG LA+MTSSTMVK RFVW+YA++QF+LVV+FAH+F+ +VH +P+L I+++TFAGFGVAM GS +  E+L
Sbjct:    5 EENRAIDELRDGSSAAEARVVVPIQKLEKSSGMAAETPNSKHWRKSNLFLEIPTRTLEVSRQEFVQIKMPPTPTPTPKRVNFLVTPSPSDSRLNGSPLPSSTRGKSSIRNILPKLNFKHRASSSDVEKAGSIDSSSLTTVTQDKPSMSRSWSFSKIFT-----------PRMKRTSS---------------------------LPVTPVAHSNPDSAHGGSI-----------------NCHLTLDTKGAR-RISRSLSVPVINKEKNIRKMDSFYRVIPSTPRVKNGDAEVSKATTGDDENDEANGEDIPEEEAVCRICLVELCEGGETLKMECSCKGELALAHQECAIKWFAIKGNKTCDICKQEVENLPVTLLRIQSSINRNTSGSNFGQMEING----YRVWQEVPILVIVSMLAYFCFLEQLLV--GKMGSSAIAISLPFSCVLGLLASMTSSTMVKRRFVWVYASVQFALVVLFAHIFYNLVHVQPVLSILISTFAGFGVAMSGSSVVVEVL 461
[Close]
BLAST of XM_017398446.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7FVB5 (RING-CH-type domain-containing protein {ECO:0000259|PROSITE:PS51292})

HSP 1 Score: 476.093 bits (1224), Expect = 1.000e-161
Identity = 271/537 (50.47%), Postives = 342/537 (63.69%), Query Frame = 0
 
Query:    1 MKTHENKT----LGDHPNDGNACQKEIFIPLHMLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQD-FVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKVSSSDMEKAASLGPGE--------PSDKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGTQNTKGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRNQT--STTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFSEFYRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELLKWRR 521
            MKT +  +    L DH N   A Q EI IP+H +++ +  + +TPN K  +K  L  E+  R   +S  D FVQIKMPP+PT + KKVN +  PSPS+A+T  SPGPS  + K+  K +LPK S K + S SD E+A +  PG         P +KPSI RSWSL++IFTP+M  T+S                   LPV+ V ++N ESI GEN   +  +                                    NTKGA   I+RSLSVP + K    ++ DSF RVIPS PR ++ + T  + T    D EN E DGEDI EEEAVCRICLVE+CEGGETLK+EC+CKGELALAH+ECAIKWFSIKG K C+VCK EV+NL V LLRVQSVQN N+GA  A  ME+NG    YR+WQEV ILVIVS+L YFCFLE+LLV    MG G+VA+S+PFSC+LG L++MTSSTMVK RFVW+Y++ QF+LVVIFAH+F+ +VH + +L I+L+TF GFG+AM GS I  E  +WRR
Sbjct:    1 MKTADTNSSSTELQDHGNS-TAPQTEILIPIHKIDNPSAIASETPNPKHWKKQNLFLEVPTRRLHVSPHDEFVQIKMPPTPTPTPKKVNFVLTPSPSDARTIGSPGPSSARGKSGFKSLLPKLSFKARSSQSDAERATA-NPGVEASSPLPLPQEKPSISRSWSLTRIFTPRMKSTTSS------------------LPVTPVGQSNLESIGGENLGGLVNL------------------------------------NTKGAPRQISRSLSVPVIRKERRMKRSDSFFRVIPSTPRVKEVDSTMPNATTPTGDTENNEDDGEDIHEEEAVCRICLVELCEGGETLKMECSCKGELALAHQECAIKWFSIKGNKICDVCKQEVQNLSVTLLRVQSVQNPNSGANRALQMEING----YRIWQEVSILVIVSMLAYFCFLEQLLV--GKMGTGAVAISLPFSCVLGLLSSMTSSTMVKRRFVWIYSSTQFALVVIFAHIFYSVVHVQAVLSILLSTFTGFGIAMSGSSILVEFFRWRR 475
[Close]
BLAST of XM_017398446.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4LYR6 (RING-CH-type domain-containing protein {ECO:0000259|PROSITE:PS51292} (Fragment))

HSP 1 Score: 474.167 bits (1219), Expect = 1.003e-160
Identity = 257/503 (51.09%), Postives = 333/503 (66.20%), Query Frame = 0
 
Query:   41 PNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKVSSSDMEKAASLGPGE----PSDKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFT--GTQNTKGAHSHIARSLSVPSLNKLTS--TRKMDSFIRVIPS-PRTRDRNQ-TSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFSEF-----YRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELLKWRRRLHVSSN 528
            P+ KQ RKP L  E+ +R  ++S +++VQIKMPP+PT + K+VN +  PSPS+A+ + SPGPS  + K+S K +LPK S K + S SD E+AA+L        P DKPSI RSWSL+KIFT           P + R +S                                              LP  PI  +N E+I G N +   T  TKGA   I+RSLSVP LN +     R+ DSF RVIPS P+ ++ +  +STT  A D EN E  GEDIPEEEAVCRICLVE+CEGGETLK+EC+CKG+LALAH+ECA+KWFSIKG  TC+VCK EV+NLPV LLR+QSV+NRNTGA  A ++E+NG+ +F      RVWQEVPILVIVS+L YFCFLE+LLV    MG G+V +S+PFSC+LG LA+MTSSTMVK RFVW+YA++QF+LVV+FAH+F+ ++H + +L I+L+TFAGFG++M GS I  E+ +WRR  H  ++
Sbjct:   55 PHAKQWRKPNLFLEIPSRALEVSPKEYVQIKMPPTPTPTPKRVNFLLTPSPSDARVSGSPGPST-RGKSSLKSLLPKLSFKSRTSQSDAERAANLAVEASSPMPQDKPSISRSWSLTKIFT-----------PRMKRTSS----------------------------------------------LPVTPIGHSNPESICGENLSSSATLKTKGALRSISRSLSVPDLNAIKDRRMRRTDSFFRVIPSTPQVKEGDTVSSTTTPAGDAENSEASGEDIPEEEAVCRICLVELCEGGETLKMECSCKGDLALAHQECAVKWFSIKGNMTCDVCKQEVRNLPVTLLRIQSVRNRNTGANRASHIEINGYRQFCFIILTRVWQEVPILVIVSMLAYFCFLEQLLV--GRMGTGAVTISLPFSCVLGLLASMTSSTMVKRRFVWVYASVQFALVVLFAHIFYTLIHVQSVLSILLSTFAGFGISMSGSSILVEVFRWRRHWHAQAD 497
[Close]
BLAST of XM_017398446.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9IAD1 ((Ubiquitin--protein ligase {ECO:0000313|EMBL:PIN26716.1}))

HSP 1 Score: 471.855 bits (1213), Expect = 4.593e-160
Identity = 256/522 (49.04%), Postives = 339/522 (64.94%), Query Frame = 0
 
Query:    1 MKTHENKT--LGDHPNDGNACQKEIFIPLHMLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKVSSSDMEKAAS---LGPGEPSDKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGTQNTKGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRNQTSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFSEFYRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFEL 516
            M   E  T  L +  N    C++++ +P+H L +S+  ++   N+K  RK  L  E+  R  ++S Q+FVQIKMPP+ T + K+VN +  PSPS+++   SPGPS  +AK+S ++ILPK  +KY+ S+SD +KAA+   L  G P D PSI +SWS SKIFTP+M R SSL                                      PV  + ++N  +TR G         R NS          T +TKG    ++RSLSVP +NK    RK DSF RVIPS P+  D +  ++TA A DDE  ET+GEDIPEEEAVCRICLVE+CEGGETLK+EC+CKGELALAH++CA+KWF+IKG +TC+VCK EV+NLPV LLR+QS  NRNT       ME+N     YRVW EVPILVI+S+L YFCFLE+LLV    MG  ++A+S+PFSC+LG L++MTSSTMVK RFVW+YA++QF+LVV+FAH+F+ +VH + +L I+L+TFAGFGV+M  S I  E+
Sbjct:    2 MNAEEKNTSELDELHNRSTICERQVVVPIHELETSSEMAEQKSNSKHWRKSNLFLEIPTRTLEVSRQEFVQIKMPPTTTPTPKRVNFVVTPSPSDSRLKGSPGPSSTRAKSSIRNILPKLKLKYRGSNSDTDKAANDIDLATGAP-DTPSISQSWSFSKIFTPRMKRPSSL--------------------------------------PVTPLANSNPNSTRGG---------RTNSRL--------TLDTKGVR-RMSRSLSVPVINKEKGIRKTDSFFRVIPSTPKVTDADTPASTATAGDDEKNETNGEDIPEEEAVCRICLVELCEGGETLKMECSCKGELALAHQDCAVKWFAIKGNQTCDVCKQEVRNLPVTLLRIQSCINRNTTVSNLGQMEINR----YRVWHEVPILVIISMLAYFCFLEQLLV--GKMGSSAIAISLPFSCVLGLLSSMTSSTMVKRRFVWVYASVQFALVVLFAHIFYNLVHIQAVLSILLSTFAGFGVSMSASSIVVEV 460
[Close]
BLAST of XM_017398446.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BAY0 (RING-CH-type domain-containing protein {ECO:0000259|PROSITE:PS51292} (Fragment))

HSP 1 Score: 471.085 bits (1211), Expect = 2.482e-159
Identity = 266/527 (50.47%), Postives = 345/527 (65.46%), Query Frame = 0
 
Query:    1 MKTHENKTLGDHPNDGNACQKEIFIPLHMLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSL--KKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKVSSSDMEKAASLGPGE----PSDKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGTQN--TKGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRN-QTSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFSEFYRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELL 517
            MKT E  +L +  +DG+AC++ + IP+  +  S+G +++TPN K  +K  L  E+ +R  ++  Q+FVQIKMPP+PT +   KKVN +  PSPS+A+ + SPGP   + KTS K+++PK S KY+ ++SD EKAAS   G     P +KPSI RS  L+KIFT           P + R +S                                              LP  PI+ +N E++ G + +   N   KGA  HI+RSLSVP  N+  S R+MDSF RVIPS PR +D +   S T    D EN E DGEDIPEEEAVCRICLVE+CEGGETLK+EC+CKGELALAH+ECA+KWFSIKG KTC+VCK EV+NLPV LLR+QSV+N+N GA     MEVNG    YRVWQEVP+LVIVS+L YFCFLE+LLV    MG G++A+S+PFSC++G LA+MTSSTMV  RFVW+YA++QF+LVV+FAH+F+ +VH + +L I+L+TFAG GVAM GS I  E L
Sbjct:   35 MKTEEANSLTEI-HDGSACER-VVIPIQEVEDSSGITEETPNGKHWKKQNLYLEIPSRKLEVCPQEFVQIKMPPTPTPTPTPKKVNFLLTPSPSDARVSESPGPPSSRGKTSIKNLIPKLSFKYRSATSDTEKAASPAIGASSTMPPEKPSISRS--LTKIFT-----------PRMKRTSS----------------------------------------------LPVTPIAHSNPESVQGGSVSSLLNLDAKGAQQHISRSLSVPVNNRERSIRRMDSFFRVIPSTPRVKDGDAMMSDTTPMGDVENNEADGEDIPEEEAVCRICLVELCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKQEVQNLPVTLLRIQSVRNQNAGANRVRQMEVNG----YRVWQEVPVLVIVSMLSYFCFLEQLLV--GKMGTGAIAISLPFSCVMGLLASMTSSTMVMRRFVWVYASVQFALVVLFAHIFYSVVHLKAVLSILLSTFAGLGVAMSGSSILVEFL 494
[Close]
BLAST of XM_017398446.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9SWB9 ((Protein binding protein, putative {ECO:0000313|EMBL:EEF32095.1}))

HSP 1 Score: 461.84 bits (1187), Expect = 2.154e-156
Identity = 247/515 (47.96%), Postives = 327/515 (63.50%), Query Frame = 0
 
Query:   15 DGNACQKEIFIPLHMLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKVSSSDMEKAASLGPGE----PSDKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTG--TQNTKGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRNQTSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFSEFYRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELLKWRRR 522
            D  + Q     PLH ++   G  ++    +Q ++  L  E+ +R  D  SQD V IKMPP+P+ + +KVN +  P+ S+A+   SPGPS  + K+S + +LPK S K ++S  D EKAA+L P      P +KPSI RS SLSKIFT           P + R +S                                              LP   I+ +N ++I G + +G  + + KGA   I+RSLSVP  NK  S R+MDSF R+IPS PR ++ +   T +   D E  ++DGEDIPEEEAVCRICLVE+CEGGET K+EC+CKGELALAH+ECA+KWFSIKG KTC+VCK EV+NLPV LLR+QSV  R TGA  A   + NG    YRVWQEVP+LVIVS+L YFCFLE+LLV   +MG G++A+S+PFSC+LG L++M SSTMVK RFVW+YA+ QF+LVV+FAH+F+ +V+ + +L ++LATF+GFGVAM GS I  E+L+WRRR
Sbjct:   13 DVGSSQGAPVSPLHKVDDLTGIVEEANQARQWKQKNLFLEIPSRTLDDPSQDSVVIKMPPTPSPTPRKVNFLLTPTSSDARACGSPGPSSTRGKSSLRSLLPKLSFKSRISMLDAEKAANLAPDSSCTMPREKPSISRSLSLSKIFT-----------PRMKRTSS----------------------------------------------LPVTSIANSNPDSIRGGSISGALSSSGKGARRQISRSLSVPVNNKEKSIRRMDSFFRIIPSTPRVKEGDVILTASPGIDTETEDSDGEDIPEEEAVCRICLVELCEGGETFKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKQEVRNLPVTLLRIQSVHARTTGASRALQADANG----YRVWQEVPVLVIVSMLAYFCFLEQLLV--GNMGTGAIAISLPFSCVLGLLSSMISSTMVKRRFVWVYASSQFALVVLFAHIFYSLVNLQAVLSVLLATFSGFGVAMSGSSILVEILRWRRR 464
[Close]
BLAST of XM_017398446.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6GU03 (RING-CH-type domain-containing protein {ECO:0000259|PROSITE:PS51292})

HSP 1 Score: 461.84 bits (1187), Expect = 2.179e-156
Identity = 251/522 (48.08%), Postives = 337/522 (64.56%), Query Frame = 0
 
Query:   14 NDGNACQKEIFIPLHMLNSSAGSSQDTPNTKQLRKPYLLSEMGARNQDISSQDFVQIKMPPSPTSSLKKVNIIPKPSPSNAKTNTSPGPSLPKAKTSTKHILPKRSVKYKVSSSDMEKAASLGPGEPS----DKPSILRSWSLSKIFTPKMNRTSSLPLPPIARANSETICGGNLLPVSSVLRANSESICGENFAPVATVPHANSETTREGNLLPANPISRANSETIYGSNFTGT--QNTKGAHSHIARSLSVPSLNKLTSTRKMDSFIRVIPS-PRTRDRN-QTSTTAAAEDDENYETDGEDIPEEEAVCRICLVEVCEGGETLKLECNCKGELALAHKECAIKWFSIKGCKTCEVCKHEVKNLPVKLLRVQSVQNRNTGAIGAPYMEVNGFSEFYRVWQEVPILVIVSILLYFCFLEELLVETTDMGMGSVALSIPFSCILGFLAAMTSSTMVKGRFVWLYAAMQFSLVVIFAHLFFFMVHKEPILLIILATFAGFGVAMGGSIIFFELLKWRRRLHVSS 527
            +D +  ++ + IP+  +  S G +++TP+ +Q R+  L  E+ +R  + SSQD V+IKMPP+P+ + KKVN    PSPS+ +   SPGPS  K K+S K +LPK S K + ++SD +KAA+L  G  S    +KPSI RS SLSKIFT           P + R +S                                              LP  P+  +N E++ G +       +T+G H  I+RSLSVP  NK  S ++MDSF RVIPS PR ++ +  T  ++ A + EN E DGEDIPEEEAVCRICLVE+CEGGETLK+EC+CKGELALAH+ECA+KWF IKG K C+VCK EV+NLPV LLR+QS+Q RN+G+  A   EVNG    YRVW E+P+LVIVS+L YFCFLE+LLV   +MG  ++A+S+PFSC+LG LA+MT+STMVK RF+W+YA++QF+LVV+FAH+F+ +V  + +L I+L+TFAG G+AM GS I  ELL+WR R H  S
Sbjct:   12 HDVDEGERAVAIPIQEVEDSTGITEETPHFQQWRRQNLFLEIPSREMEASSQDSVRIKMPPTPSPTPKKVNFFLTPSPSDTRVTGSPGPSATKGKSSKKSLLPKLSFKNRSATSDSDKAANLALGGSSTTSREKPSISRSLSLSKIFT-----------PKMNRTSS----------------------------------------------LPGTPLEHSNPESVSGGSIGSALKSDTRGVHRRISRSLSVPVNNKDRSIKRMDSFFRVIPSTPRVKELDAMTMNSSPAVEAENNEADGEDIPEEEAVCRICLVELCEGGETLKMECSCKGELALAHQECAVKWFRIKGNKNCDVCKQEVQNLPVTLLRIQSIQTRNSGSNRAHQTEVNG----YRVWHELPVLVIVSMLAYFCFLEQLLV--GNMGTSAIAISLPFSCVLGLLASMTASTMVKRRFIWVYASIQFALVVLFAHIFYSLVRVQAVLSILLSTFAGLGIAMSGSSIIVELLRWRLRWHAWS 470
Match NameStatsDescription
A0A6P6VXS6E-Value: 4.936e-171, PID: 51.44(uncharacterized protein LOC113727776 {ECO:0000313... [more]
A0A068UG02E-Value: 5.312e-170, PID: 50.95RING-CH-type domain-containing protein {ECO:000025... [more]
A0A6P6U8Q7E-Value: 7.640e-170, PID: 50.56(E3 ubiquitin-protein ligase MARCH7-like {ECO:0000... [more]
A0A6I9TV34E-Value: 2.704e-163, PID: 49.71(uncharacterized protein LOC105170709 isoform X1 {... [more]
A0A7J7FVB5E-Value: 1.000e-161, PID: 50.47RING-CH-type domain-containing protein {ECO:000025... [more]
A0A6A4LYR6E-Value: 1.003e-160, PID: 51.09RING-CH-type domain-containing protein {ECO:000025... [more]
A0A2G9IAD1E-Value: 4.593e-160, PID: 49.04(Ubiquitin--protein ligase {ECO:0000313|EMBL:PIN26... [more]
A0A5B7BAY0E-Value: 2.482e-159, PID: 50.47RING-CH-type domain-containing protein {ECO:000025... [more]
B9SWB9E-Value: 2.154e-156, PID: 47.96(Protein binding protein, putative {ECO:0000313|EM... [more]
F6GU03E-Value: 2.179e-156, PID: 48.08RING-CH-type domain-containing protein {ECO:000025... [more]
back to top
Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.