Resource Type:
Polypeptide
Name:
XM_017393195.1
Identifier:
XM_017393195.1-protein
Sequence:
MLPCLCLNNDSTPPHRSVTTKKKTNGVLKMDESTHKHHHRGYYRDPVVKQ
SQVARKSSSTGIKKMAINKVSNFSDLIHRVTASCFLHPLAADRHHSSQIS
PSDDSDDSDDYPPNPRISEYLAQQEEDIENTENGSIARARRSDGEFGDVE
VLIGEVFEAFSAVKKAYVSLQEAHCPWDPDRMRVCDAAVVAELRRIGVLR
ERFRRKNVGGERGRRVVGATLREVVAPYEAAVEELKRELKVKEVEVENLK
DKLKNAVVVTGGSGGKKNGRGHHQSKRRVGCSTQTPVSLSPAPEVFEATM
SMVREASKSFTALLLSLMKSAHWDITAAVRSIEAAAGATTNATMDSIVGP
NHAKYAMESYVNRKFFQGFDHETFYMDGSLSSLLHPDQFRRDCFTQYRDM
KAMDPIELLGILPTCDFGKFCCKKYLSIIHPKMEESLFGDLEQRCQVLAG
NHPRSRFYGDFLGLAKAIWLLHLLAFSLEPPPSYFEGSKGADFHSQYMES
VVRFPGGRVVGGQVVGFPVSPGFKLASGSVIKARVYLVPKNDF
Sequence Length:
543
Sequence Checksum:
49c084fa6aef341b8a3b0607d819c127
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017393195.1, derives from mRNA, XM_017393195.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017393195.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
back to top
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017393195.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C674 (DUF641 domain-containing protein {ECO:0000259|Pfam:PF04859})
HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0
Identity = 341/484 (70.45%), Postives = 392/484 (80.99%), Query Frame = 0
Match: A0A5J5C674 (DUF641 domain-containing protein {ECO:0000259|Pfam:PF04859})
HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0
Identity = 341/484 (70.45%), Postives = 392/484 (80.99%), Query Frame = 0
Query: 63 KKMAINKVSNFSDLIHRVTASCFLHPLAADRHHSSQISPSDDSDDSDDYPPNPRISEYLAQQEEDIENTENGSIARARRSDGEFGDVEVLIGEVFEAFSAVKKAYVSLQEAHCPWDPDRMRVCDAAVVAELRRIGVLRERFRR--KNVGGERGRRV--VGATLREVVAPYEAAVEELKRELKVKEVEVENLKDKLKNAVVVTGGSGGKKNGRGHHQSKRRVGCSTQTPVSLSPAPEVFEATMSMVREASKSFTALLLSLMKSAHWDITAAVRSIEAAA-GATTNATMDSIVGPNHAKYAMESYVNRKFFQGFDHETFYMDGSLSSLLHPDQFRRDCFTQYRDMKAMDPIELLGILPTCDFGKFCCKKYLSIIHPKMEESLFGDLEQRCQVLAGNHPRSRFYGDFLGLAKAIWLLHLLAFSLEPPPSYFEGSKGADFHSQYMESVVRFPGGRVVGGQVVGFPVSPGFKLASGSVIKARVYLVPKN 541
KKMA NKVSNFSDLI RVTASC LHPLAA RH + +IS + D+S+D E + + + + N + R ++E+++GEVFE SA+K+AYVSLQEAHCPWDPD+MRV D AVVAELR++ VLRERFRR + GG R RR+ GATLREVVAPYEAAVEELKRE+K KEVEVENL++KLK A + G +GG+K GR H QSKR+V CS Q VS +PAP++FEATMS+V EAS+SFT+LLLSLM+SAHWDI AAVRSIEAA+ ATT+ + S VG NHAKYA+ESYVNRK FQ FDHETFYMDGSLSSLLHPDQ+RRDCFTQYRDMKAMDPIELLGILPTC FGKFC KKYLSI+HPKMEESLFGD+EQR QVLAGNHPRS+FYG+FLGLAKA+WLLHLLAFSL+PPPS+FE SKGA+FH QYMESVVR G R G VVGFPVSPGFKL +GSVIKARVYLVP+
Sbjct: 67 KKMA-NKVSNFSDLIQRVTASCLLHPLAAGRHEADEISQNRAGDESEDEIYKTEEEEEVERGSFRVWDGANEAEGEVRTE--RVIEMELMMGEVFEVVSAMKRAYVSLQEAHCPWDPDKMRVADVAVVAELRKLAVLRERFRRSGRECGGGRVRRIGTAGATLREVVAPYEAAVEELKREVKSKEVEVENLREKLKTAATLNGSNGGRK-GRSH-QSKRKVSCS-QGQVSAAPAPDLFEATMSLVNEASRSFTSLLLSLMRSAHWDIAAAVRSIEAASLTATTDTSPTSGVGSNHAKYALESYVNRKIFQAFDHETFYMDGSLSSLLHPDQYRRDCFTQYRDMKAMDPIELLGILPTCGFGKFCSKKYLSIVHPKMEESLFGDMEQRRQVLAGNHPRSQFYGEFLGLAKAVWLLHLLAFSLDPPPSHFEASKGAEFHPQYMESVVRLSGVRAGVGLVVGFPVSPGFKLGNGSVIKARVYLVPRT 544
BLAST of XM_017393195.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8FNW5 ((IRK-interacting protein {ECO:0000313|RefSeq:XP_016560410.1}))
HSP 1 Score: 651.358 bits (1679), Expect = 0.000e+0
Identity = 323/486 (66.46%), Postives = 386/486 (79.42%), Query Frame = 0
Match: A0A1U8FNW5 ((IRK-interacting protein {ECO:0000313|RefSeq:XP_016560410.1}))
HSP 1 Score: 651.358 bits (1679), Expect = 0.000e+0
Identity = 323/486 (66.46%), Postives = 386/486 (79.42%), Query Frame = 0
Query: 68 NKVSNFSDLIHRVTASCFLHPLAADRHHSSQISPSDDSDDSDDYPPNPRISEYLAQQEE-DIENTENGSIARARRSDGEFGDVEVLIGEVFEAFSAVKKAYVSLQEAHCPWDPDRMRVCDAAVVAELRRIGVLRERFRRKNVGGERGR---RVVGATLREVVAPYEAAVEELKRELKVKEVEVENLKDKLKNAVVVTGGSGGKKNGRGHHQSKRRVGCSTQTPVSLSPAPEVFEATMSMVREASKSFTALLLSLMKSAHWDITAAVRSIEAAA-GATTNATMDSIVGPNHAKYAMESYVNRKFFQGFDHETFYMDGSLSSLLHPDQFRRDCFTQYRDMKAMDPIELLGILPTCDFGKFCCKKYLSIIHPKMEESLFGDLEQRCQVLAGNHPRSRFYGDFLGLAKAIWLLHLLAFSLEPPPSYFEGSKGADFHSQYMESVVRFP-----GGRVVGGQVVGFPVSPGFKLASGSVIKARVYLVPKNDF 543
NKVSNFSDLI RVTASC LHPL+++ H S+ D+S+D D Y E + ++E E + + + ++E+L+GEVF+A SA+KKAYVSLQEAHCPWD D+MRV D AVV+ELRR+GVLRERFRR V GR RV ATLREVVAPYE+A++ELK+E+K KE+E+++LK+KLK A +V+ S GKK+ +SKRRV CS+Q V++ PAP++FEAT+S V+EASKSFT+LLLSLM+SAHWDI AAVRSIEAA+ TT T DSIVG NHAKYA+ESYVNRK FQGFDHETFYMDGSLSSLL PDQ RR+CFTQYRDMKAMDP+ELLGILPTC FG FC KKYL+I+HPKMEESLFGDLEQR QVLAGNHPRS+FYG+FL LAKA+WLLHLLAFSL+PPPS+FE S G++FH +YMESVV++ GGR+ G VVGFPVSPGFKL +GSV+KARVYLVPKN F
Sbjct: 3 NKVSNFSDLIQRVTASCLLHPLSSNAHISN---AHDESEDDDKYTTEDEEQEEEEENTPYNVETVEKFEVKKEDTQTEKVIEMEMLLGEVFDAVSAMKKAYVSLQEAHCPWDQDKMRVADVAVVSELRRLGVLRERFRRNVVRSGSGRGDWRVGAATLREVVAPYESALDELKQEVKTKEIEIDDLKEKLKMATLVSSNSNGKKS-----KSKRRVSCSSQAQVNVLPAPDLFEATVSSVKEASKSFTSLLLSLMRSAHWDIAAAVRSIEAASSNTTTTPTADSIVGANHAKYALESYVNRKMFQGFDHETFYMDGSLSSLLQPDQHRRECFTQYRDMKAMDPMELLGILPTCSFGNFCFKKYLAIVHPKMEESLFGDLEQRRQVLAGNHPRSQFYGEFLALAKAVWLLHLLAFSLDPPPSHFEASNGSEFHPKYMESVVKYSISMGIGGRMGSGLVVGFPVSPGFKLGNGSVVKARVYLVPKNGF 480
BLAST of XM_017393195.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2BKK1 (DUF641 domain-containing protein {ECO:0000259|Pfam:PF04859})
HSP 1 Score: 650.203 bits (1676), Expect = 0.000e+0
Identity = 323/492 (65.65%), Postives = 393/492 (79.88%), Query Frame = 0
Match: A0A6N2BKK1 (DUF641 domain-containing protein {ECO:0000259|Pfam:PF04859})
HSP 1 Score: 650.203 bits (1676), Expect = 0.000e+0
Identity = 323/492 (65.65%), Postives = 393/492 (79.88%), Query Frame = 0
Query: 68 NKVSNFSDLIHRVTASCFLHPLAADRHHSSQISPSDDSDDSDDYPPNPRISEYLAQQEED--------IENTENGSIARARRSDGEFGDVEVLIGEVFEAFSAVKKAYVSLQEAHCPWDPDRMRVCDAAVVAELRRIGVLRERFRRKNVGGERGR---RVVGATLREVVAPYEAAVEELKRELKVKEVEVENLKDKLKNAVVVTGGSGGKKNGRGHHQSKRRVGCSTQTPVSLSPAPEVFEATMSMVREASKSFTALLLSLMKSAHWDITAAVRSIEAAAGATTNATMDSIVGPNHAKYAMESYVNRKFFQGFDHETFYMDGSLSSLLHPDQFRRDCFTQYRDMKAMDPIELLGILPTCDFGKFCCKKYLSIIHPKMEESLFGDLEQRCQVLAGNHPRSRFYGDFLGLAKAIWLLHLLAFSLEPPPSYFEGSKGADFHSQYMESVVRFPGGRVVGGQ-----VVGFPVSPGFKLASGSVIKARVYLVPKNDF 543
NKVSNFSDLI RVTASC LHPL+++ H IS + D+D+S+D +Y + EE+ +E +N + + ++E+L+GEVF+A SA+KKAYVSLQEAHCPWD D+MRV D AV++ELRR+GVLRERFRR V G R RV ATLREVVAPYE+AVEELK+E+K K++E+++LK+KLK A +++ SG KKN +SKRRV CS+Q PV++SPAP++FE+T+S V+EASKSFT++LLSLM+SAHWDI AAVRSIEAA+ +T T DSIVG NHAKYA+ESYVNRK FQGFDHETFYMDGSLSSLLHPDQ RR+C+TQYRDMKAMDP+ELLGILPTC FG FC KKYL+I+HPKMEESLFGDLEQR QVLAGNHPRS+FYG+FLGLAKA+WLLHLLAFSL+PPPS+FE S G++FH +YMESVV++ +GG+ VVGFPVSPGFKL +GSV+KARVYLVPKN F
Sbjct: 3 NKVSNFSDLIQRVTASCLLHPLSSNGH----ISGARDADESED-------DKYTTEDEEEEHSPYVETLEKFQNFEVKNEEIRTEKVNEMEMLLGEVFDAVSAMKKAYVSLQEAHCPWDQDKMRVADVAVISELRRLGVLRERFRRNVVVGGSARGDWRVGAATLREVVAPYESAVEELKQEVKAKDIEIDDLKEKLKTATLLSSNSG-KKN-----KSKRRVNCSSQAPVNMSPAPDLFESTVSSVKEASKSFTSMLLSLMRSAHWDIAAAVRSIEAASSNSTTPTADSIVGANHAKYALESYVNRKMFQGFDHETFYMDGSLSSLLHPDQHRRECYTQYRDMKAMDPMELLGILPTCSFGNFCFKKYLAIVHPKMEESLFGDLEQRRQVLAGNHPRSQFYGEFLGLAKAVWLLHLLAFSLDPPPSHFEASNGSEFHPKYMESVVKYSISMGIGGRMGMGLVVGFPVSPGFKLGNGSVVKARVYLVPKNGF 477
BLAST of XM_017393195.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3AA18 (DUF641 domain-containing protein {ECO:0000259|Pfam:PF04859})
HSP 1 Score: 649.818 bits (1675), Expect = 0.000e+0
Identity = 322/486 (66.26%), Postives = 386/486 (79.42%), Query Frame = 0
Match: A0A2G3AA18 (DUF641 domain-containing protein {ECO:0000259|Pfam:PF04859})
HSP 1 Score: 649.818 bits (1675), Expect = 0.000e+0
Identity = 322/486 (66.26%), Postives = 386/486 (79.42%), Query Frame = 0
Query: 68 NKVSNFSDLIHRVTASCFLHPLAADRHHSSQISPSDDSDDSDDYPPNPRISEYLAQQEE-DIENTENGSIARARRSDGEFGDVEVLIGEVFEAFSAVKKAYVSLQEAHCPWDPDRMRVCDAAVVAELRRIGVLRERFRRKNVGGERGR---RVVGATLREVVAPYEAAVEELKRELKVKEVEVENLKDKLKNAVVVTGGSGGKKNGRGHHQSKRRVGCSTQTPVSLSPAPEVFEATMSMVREASKSFTALLLSLMKSAHWDITAAVRSIEAAA-GATTNATMDSIVGPNHAKYAMESYVNRKFFQGFDHETFYMDGSLSSLLHPDQFRRDCFTQYRDMKAMDPIELLGILPTCDFGKFCCKKYLSIIHPKMEESLFGDLEQRCQVLAGNHPRSRFYGDFLGLAKAIWLLHLLAFSLEPPPSYFEGSKGADFHSQYMESVVRFP-----GGRVVGGQVVGFPVSPGFKLASGSVIKARVYLVPKNDF 543
NKVSNFSDLI RVTASC LHPL+++ H S+ D+S+D D Y E + ++E E + + + ++E+L+GEVF+A SA+KKAYVSLQEAHCPWD D+MRV D AVV+ELRR+GVLRERFRR V GR RV ATLREVVAPYE+A++ELK+E+K KE+E+++LK+KLK A +V+ S GKK+ +SKRRV CS+Q V++ PAP++FEAT+S V+EASKSFT+LLLSLM+SAHWDI AAVRSIEAA+ TT T DSIVG NHAKYA+E+YVNRK FQGFDHETFYMDGSLSSLL PDQ RR+CFTQYRDMKAMDP+ELLGILPTC FG FC KKYL+I+HPKMEESLFGDLEQR QVLAGNHPRS+FYG+FL LAKA+WLLHLLAFSL+PPPS+FE S G++FH +YMESVV++ GGR+ G VVGFPVSPGFKL +GSV+KARVYLVPKN F
Sbjct: 3 NKVSNFSDLIQRVTASCLLHPLSSNAHISN---AHDESEDDDKYTTEDEEQEEEEENTPYNVETVEKFEVKKEDTQTEKVIEMEMLLGEVFDAVSAMKKAYVSLQEAHCPWDQDKMRVADVAVVSELRRLGVLRERFRRNVVRSGSGRGDWRVGAATLREVVAPYESALDELKQEVKTKEIEIDDLKEKLKMATLVSSNSNGKKS-----KSKRRVSCSSQAQVNVLPAPDLFEATVSSVKEASKSFTSLLLSLMRSAHWDIAAAVRSIEAASSNTTTTPTADSIVGANHAKYALEAYVNRKMFQGFDHETFYMDGSLSSLLQPDQHRRECFTQYRDMKAMDPMELLGILPTCSFGNFCFKKYLAIVHPKMEESLFGDLEQRRQVLAGNHPRSQFYGEFLALAKAVWLLHLLAFSLDPPPSHFEASNGSEFHPKYMESVVKYSISMGIGGRMGSGLVVGFPVSPGFKLGNGSVVKARVYLVPKNGF 480
BLAST of XM_017393195.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2XG02 (DUF641 domain-containing protein {ECO:0000259|Pfam:PF04859})
HSP 1 Score: 649.047 bits (1673), Expect = 0.000e+0
Identity = 322/486 (66.26%), Postives = 385/486 (79.22%), Query Frame = 0
Match: A0A2G2XG02 (DUF641 domain-containing protein {ECO:0000259|Pfam:PF04859})
HSP 1 Score: 649.047 bits (1673), Expect = 0.000e+0
Identity = 322/486 (66.26%), Postives = 385/486 (79.22%), Query Frame = 0
Query: 68 NKVSNFSDLIHRVTASCFLHPLAADRHHSSQISPSDDSDDSDDYPPNPRISEYLAQQEE-DIENTENGSIARARRSDGEFGDVEVLIGEVFEAFSAVKKAYVSLQEAHCPWDPDRMRVCDAAVVAELRRIGVLRERFRRKNVGGERGR---RVVGATLREVVAPYEAAVEELKRELKVKEVEVENLKDKLKNAVVVTGGSGGKKNGRGHHQSKRRVGCSTQTPVSLSPAPEVFEATMSMVREASKSFTALLLSLMKSAHWDITAAVRSIEAAA-GATTNATMDSIVGPNHAKYAMESYVNRKFFQGFDHETFYMDGSLSSLLHPDQFRRDCFTQYRDMKAMDPIELLGILPTCDFGKFCCKKYLSIIHPKMEESLFGDLEQRCQVLAGNHPRSRFYGDFLGLAKAIWLLHLLAFSLEPPPSYFEGSKGADFHSQYMESVVRFP-----GGRVVGGQVVGFPVSPGFKLASGSVIKARVYLVPKNDF 543
NKVSNFSDLI RVTASC LHPL+++ H S+ D+S+D D Y E + ++E E + + + ++E+L+GEVF+A SA+KKAYVSLQEAHCPWD D+MRV D AVV+ELRR+GVLRERFRR V GR RV ATLREVVAPYE+A++ELK+E+K KE+E+++LK+KLK A +V+ S GKK+ +SKRRV CS+Q V++ PAP++FEAT+S V+EASKSFT+LLLSLM+SAHWDI AAVRSIEAA+ TT T DSIVG NHAKYA+ESYVNRK FQGFDHETFYMDGSLSSLL PDQ RR+CF QYRDMKAMDP+ELLGILPTC FG FC KKYL+I+HPKMEESLFGDLEQR QVLAGNHPRS+FYG+FL LAKA+WLLHLLAFSL+PPPS+FE S G++FH +YMESVV++ GGR+ G VVGFPVSPGFKL +GSV+KARVYLVPKN F
Sbjct: 3 NKVSNFSDLIQRVTASCLLHPLSSNAHISN---ARDESEDDDKYTTEDEEQEEEEENTPYNVETVEKFEVKKEDTKTEKVIEMEMLLGEVFDAVSAMKKAYVSLQEAHCPWDQDKMRVADVAVVSELRRLGVLRERFRRNVVRSGSGRGDWRVGAATLREVVAPYESALDELKQEVKTKEIEIDDLKEKLKMATLVSSNSNGKKS-----KSKRRVSCSSQAQVNVLPAPDLFEATVSSVKEASKSFTSLLLSLMRSAHWDIAAAVRSIEAASSNTTTTPTADSIVGANHAKYALESYVNRKMFQGFDHETFYMDGSLSSLLQPDQHRRECFAQYRDMKAMDPMELLGILPTCSFGNFCFKKYLAIVHPKMEESLFGDLEQRRQVLAGNHPRSQFYGEFLALAKAVWLLHLLAFSLDPPPSHFEASNGSEFHPKYMESVVKYSISMGIGGRMGSGLVVGFPVSPGFKLGNGSVVKARVYLVPKNGF 480
BLAST of XM_017393195.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7FTR7 (DUF641 domain-containing protein {ECO:0000259|Pfam:PF04859})
HSP 1 Score: 648.662 bits (1672), Expect = 0.000e+0
Identity = 327/485 (67.42%), Postives = 394/485 (81.24%), Query Frame = 0
Match: A0A3Q7FTR7 (DUF641 domain-containing protein {ECO:0000259|Pfam:PF04859})
HSP 1 Score: 648.662 bits (1672), Expect = 0.000e+0
Identity = 327/485 (67.42%), Postives = 394/485 (81.24%), Query Frame = 0
Query: 68 NKVSNFSDLIHRVTASCFLHPLAADRHHSSQISPSDDSDDS-DDYPPNPRISEYLAQQEEDIENTENGSIARARRSDGEFGDVEVLIGEVFEAFSAVKKAYVSLQEAHCPWDPDRMRVCDAAVVAELRRIGVLRERFRRKNVGG--ERGRRVVG-ATLREVVAPYEAAVEELKRELKVKEVEVENLKDKLKNAVVVTGGSGGKKNGRGHHQSKRRVGCSTQTPVSLSPAPEVFEATMSMVREASKSFTALLLSLMKSAHWDITAAVRSIEAAAGATTNATMDSIVGPNHAKYAMESYVNRKFFQGFDHETFYMDGSLSSLLHPDQFRRDCFTQYRDMKAMDPIELLGILPTCDFGKFCCKKYLSIIHPKMEESLFGDLEQRCQVLAGNHPRSRFYGDFLGLAKAIWLLHLLAFSLEPPPSYFEGSKGADFHSQYMESVVRFPGGRVVGGQ-----VVGFPVSPGFKLASGSVIKARVYLVPKNDF 543
NKVSNFSDLI RVTASC LHPL+++ H IS + D+D+S DD E + E +E +N + + ++E+L+GEVF+A SA+KKAYVSLQEAHCPWD D+MRV D AV++ELRR+GVLRERFRR NVGG ERG VG ATLREVVAPYE+AVEELK+E+K K++E+++LK+KLK A +++ SG KKN +SKRRV CS+Q PV++SPAP++FE+T+S V+EASKSFT++LLSLM+SAHWDI AAVRSIEAA+ +T T DSIVG NHAKYA+ESYVNRK FQGFDHETFYMDGSLSSLLHPDQ RR+C+TQYRDMKAMDP+ELLGILPTC FG FC KKYL+I+HPKMEESLFGDLEQR QVLAGNHPRS+FYG+FLGLAKA+WLLHLLAFSL+PPPS+FE S G++FH +YMESVV++ +GG+ VVGFPVSPGFKL +GSV+KARVYLVPKN F
Sbjct: 3 NKVSNFSDLIQRVTASCLLHPLSSNGH----ISGARDADESEDDKYTTEEEEEEHSPYVETLEKFQNFEVKNEEIRTEKVNEMEMLLGEVFDAVSAMKKAYVSLQEAHCPWDQDKMRVADVAVISELRRLGVLRERFRR-NVGGGSERGDWRVGVATLREVVAPYESAVEELKQEVKAKDIEIDDLKEKLKTATLLSSNSG-KKN-----KSKRRVNCSSQAPVNMSPAPDLFESTVSSVKEASKSFTSMLLSLMRSAHWDIAAAVRSIEAASSNSTTPTADSIVGANHAKYALESYVNRKMFQGFDHETFYMDGSLSSLLHPDQHRRECYTQYRDMKAMDPMELLGILPTCSFGNFCFKKYLAIVHPKMEESLFGDLEQRRQVLAGNHPRSQFYGEFLGLAKAVWLLHLLAFSLDPPPSHFETSNGSEFHPKYMESVVKYSISMGIGGRMGMGLVVGFPVSPGFKLGNGSVVKARVYLVPKNGF 476
BLAST of XM_017393195.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3D7H1 (DUF641 domain-containing protein {ECO:0000259|Pfam:PF04859})
HSP 1 Score: 643.269 bits (1658), Expect = 0.000e+0
Identity = 322/486 (66.26%), Postives = 385/486 (79.22%), Query Frame = 0
Match: A0A2G3D7H1 (DUF641 domain-containing protein {ECO:0000259|Pfam:PF04859})
HSP 1 Score: 643.269 bits (1658), Expect = 0.000e+0
Identity = 322/486 (66.26%), Postives = 385/486 (79.22%), Query Frame = 0
Query: 68 NKVSNFSDLIHRVTASCFLHPLAADRHHSSQISPSDDSDDSDDYPPNPRISEYLAQQEE-DIENTENGSIARARRSDGEFGDVEVLIGEVFEAFSAVKKAYVSLQEAHCPWDPDRMRVCDAAVVAELRRIGVLRERFRRKNVGGERGR---RVVGATLREVVAPYEAAVEELKRELKVKEVEVENLKDKLKNAVVVTGGSGGKKNGRGHHQSKRRVGCSTQTPVSLSPAPEVFEATMSMVREASKSFTALLLSLMKSAHWDITAAVRSIEAAA-GATTNATMDSIVGPNHAKYAMESYVNRKFFQGFDHETFYMDGSLSSLLHPDQFRRDCFTQYRDMKAMDPIELLGILPTCDFGKFCCKKYLSIIHPKMEESLFGDLEQRCQVLAGNHPRSRFYGDFLGLAKAIWLLHLLAFSLEPPPSYFEGSKGADFHSQYMESVVRFP-----GGRVVGGQVVGFPVSPGFKLASGSVIKARVYLVPKNDF 543
NKVSNFSDLI RVTASC LHPL+++ H S+ D+S+D D Y E + ++E E + + + ++E+L+GEVF+A SA+KKAYVSLQEAHCPWD D+MRV AVV+ELRR+GVLRERFRR V GR RV ATLREVVAPYE+A++ELK+E+K KE+E+++LK+KLK A +V+ S GKK+ +SKRRV CS+Q V++ PAP++FEAT+S V+EASKSFT+LLLSLM+SAHWDI AAVRSIEAA+ TT T DSIVG NHAKYA+ESYVNRK FQGFDHETFYMDGSLSSLL PDQ RR+CFTQYRDMKAMDP+ELLGILPTC FG FC KKYL+I+HPKMEESLFGDLEQR QVLAGNHPRS+FYG+FL LAKA+WLLHLLAFSL+PPPS+FE S G++FH +YMESVV++ GGR+ G VVGFPVSPGFKL +GSV+KARVYLVPKN F
Sbjct: 3 NKVSNFSDLIQRVTASCLLHPLSSNAHISN---ARDESEDDDKYTTEDEEQEEEEENTPYNVETVEKFEVKKEDTKTEKVIEMEMLLGEVFDAVSAMKKAYVSLQEAHCPWDQDKMRV---AVVSELRRLGVLRERFRRNVVRSGSGRGDWRVGAATLREVVAPYESALDELKQEVKTKEIEIDDLKEKLKMATLVSSNSNGKKS-----KSKRRVSCSSQAQVNVLPAPDLFEATVSSVKEASKSFTSLLLSLMRSAHWDIAAAVRSIEAASSNTTTTPTEDSIVGANHAKYALESYVNRKMFQGFDHETFYMDGSLSSLLQPDQHRRECFTQYRDMKAMDPMELLGILPTCSFGNFCFKKYLAIVHPKMEESLFGDLEQRRQVLAGNHPRSQFYGEFLALAKAVWLLHLLAFSLDPPPSHFEASNGSEFHPKYMESVVKYSISMGIGGRMGSGLVVGFPVSPGFKLGNGSVVKARVYLVPKNGF 477
BLAST of XM_017393195.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M0ZMP5 ((GIL1 (GRAVITROPIC IN THE LIGHT) {ECO:0000313|EnsemblPlants:PGSC0003DMT400003998}))
HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0
Identity = 322/488 (65.98%), Postives = 394/488 (80.74%), Query Frame = 0
Match: M0ZMP5 ((GIL1 (GRAVITROPIC IN THE LIGHT) {ECO:0000313|EnsemblPlants:PGSC0003DMT400003998}))
HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0
Identity = 322/488 (65.98%), Postives = 394/488 (80.74%), Query Frame = 0
Query: 68 NKVSNFSDLIHRVTASCFLHPLAADRHHSSQISPSDDSDDSDDYPPNPRISEYLAQQE----EDIENTENGSIARARRSDGEFGDVEVLIGEVFEAFSAVKKAYVSLQEAHCPWDPDRMRVCDAAVVAELRRIGVLRERFRRKNVGG--ERGR-RVVGATLREVVAPYEAAVEELKRELKVKEVEVENLKDKLKNAVVVTGGSGGKKNGRGHHQSKRRVGCSTQTPVSLSPAPEVFEATMSMVREASKSFTALLLSLMKSAHWDITAAVRSIEAAAGATTNATMDSIVGPNHAKYAMESYVNRKFFQGFDHETFYMDGSLSSLLHPDQFRRDCFTQYRDMKAMDPIELLGILPTCDFGKFCCKKYLSIIHPKMEESLFGDLEQRCQVLAGNHPRSRFYGDFLGLAKAIWLLHLLAFSLEPPPSYFEGSKGADFHSQYMESVVRFPGGRVVGGQ-----VVGFPVSPGFKLASGSVIKARVYLVPKNDF 543
NKVSNFSDLI RVTASC LHPL+++ H IS + D+D+S+D + + ++ E +E +N + + ++E+L+GEVF+A SA+KKAYVSLQEAHCPWD D+MRV D AV++ELRR+GVLRERFRR NVGG ERG RV ATLREVVAPYE+ VEELK+E++ K++E+++LK+KLK A +++ SG KKN +SKRRV CS+Q PV++SPAP++FE+T+S V+EASKSFT+LLLSLM+SAHWDI AAVRSIEAA+ +T T DSIVG NHAKYA+ESYVNRK FQGFDHETFYMDGSLSSLLHPDQ RR+C+TQYRDMKAMDP+ELLGILPTC FG FC KKYL+I+HPKMEESLFGDLEQR QVLAGNHPRS+FYG+FLGLAK +WLLHLLAFSL+PPPS+FE S G++FH +YM+SVV++ +GG+ VVGFPVSPGFKL +GSV+KARVYLVPKN F
Sbjct: 3 NKVSNFSDLIQRVTASCLLHPLSSNGH----ISGARDADESEDDKYSTEDDDEEEEEHPPYVETLEKFQNFEVKNEEIRTEKVIEMEMLLGEVFDAVSAMKKAYVSLQEAHCPWDQDKMRVADVAVISELRRLGVLRERFRR-NVGGGSERGDWRVGAATLREVVAPYESTVEELKQEVRAKDIEIDDLKEKLKTATLLSSNSG-KKN-----KSKRRVNCSSQAPVNMSPAPDLFESTVSSVKEASKSFTSLLLSLMRSAHWDIAAAVRSIEAASSNSTTPTADSIVGANHAKYALESYVNRKMFQGFDHETFYMDGSLSSLLHPDQHRRECYTQYRDMKAMDPMELLGILPTCSFGNFCFKKYLAIVHPKMEESLFGDLEQRRQVLAGNHPRSQFYGEFLGLAKTVWLLHLLAFSLDPPPSHFEASNGSEFHPKYMDSVVKYSISMGIGGRMGMGLVVGFPVSPGFKLGNGSVVKARVYLVPKNGF 479
BLAST of XM_017393195.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103Y6Z5 (DUF641 domain-containing protein {ECO:0000259|Pfam:PF04859})
HSP 1 Score: 639.802 bits (1649), Expect = 0.000e+0
Identity = 325/510 (63.73%), Postives = 382/510 (74.90%), Query Frame = 0
Match: A0A103Y6Z5 (DUF641 domain-containing protein {ECO:0000259|Pfam:PF04859})
HSP 1 Score: 639.802 bits (1649), Expect = 0.000e+0
Identity = 325/510 (63.73%), Postives = 382/510 (74.90%), Query Frame = 0
Query: 68 NKVSNFSDLIHRVTASCFLHPLAADRHHSSQISPSDDSDDSDDYPPNPRISEYLAQQEED------IENTENGSIARARRSDGEFGDVEVLIGEVFEAFSAVKKAYVSLQEAHCPWDPDRMRVCDAAVVAELRRIGVLRERFRRK--NVGG-----ERGRRVVGATLREVVAPYEAAVEELKRELKVKEVEVENLKDKLKNAVVVTGG--SGGKKNGRGHHQSKRRVGCSTQ----------------TPVSLSPAPEVFEATMSMVREASKSFTALLLSLMKSAHWDITAAVRSIEAAAGATTNATM---DSIVGPNHAKYAMESYVNRKFFQGFDHETFYMDGSLSSLLHPDQFRRDCFTQYRDMKAMDPIELLGILPTCDFGKFCCKKYLSIIHPKMEESLFGDLEQRCQVLAGNHPRSRFYGDFLGLAKAIWLLHLLAFSLEPPPSYFEGSKGADFHSQYMESVVRFPGGRVVGGQVVGFPVSPGFKLASGSVIKARVYLVPKNDF 543
NKVSNFSDLI RVTASC LHPL + R + ++ + +D DY + + +Y EED IE + + R+ + + +L+ EVFE S++KKAYVSLQEAHCPWDPD+MR+ D AV+AE+R++GVLRERFRR VGG R V G TLREVVAPYEAA+E+LK E+K KE E+ENL++KLK A V+ GG SG K HHQSK++V S+Q T VS SP PEVFE+ +S V+E SKSFT+LLLSLMKSAHWDI A VRSIEA+ T A DSIVGPNHAKYA+ESYVNRK FQGFDHETFYMDGSLSSLL+P+QFR +CFTQYRDMKAMDPIELLGILPTC FG FC KKYLSI+HPKMEESLFGDLEQR QVLAGNHPR+ FYG+FL LAKA+WLLHLLAFSL+PPP++FEGS+GA+FH QYMESVVRFPGGRV G VVGFPVSPGFKL +GSV+KARVY+VPK++
Sbjct: 3 NKVSNFSDLIQRVTASCLLHPLGSGRRFADDVTDTHSGEDDSDYEEHNKSEKYYDDDEEDEVSPAVIEQAKGDAYKTERQME-----MVMLMSEVFETVSSMKKAYVSLQEAHCPWDPDKMRLSDMAVLAEMRKLGVLRERFRRSVGKVGGGGATEATKRTVAGLTLREVVAPYEAAMEKLKTEVKSKEAEIENLREKLKTATVLNGGGSSGRKSRSHPHHQSKKKVNYSSQLQGTNVLGVNLLPPFVTAVSPSPMPEVFESCISSVKEGSKSFTSLLLSLMKSAHWDIAATVRSIEASTTTTAGAPAAVRDSIVGPNHAKYALESYVNRKIFQGFDHETFYMDGSLSSLLNPNQFRTECFTQYRDMKAMDPIELLGILPTCQFGNFCSKKYLSIVHPKMEESLFGDLEQRRQVLAGNHPRTGFYGEFLVLAKAVWLLHLLAFSLDPPPTHFEGSRGAEFHPQYMESVVRFPGGRVAAGHVVGFPVSPGFKLGNGSVVKARVYVVPKSEL 507
BLAST of XM_017393195.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YKI9 (DUF641 domain-containing protein {ECO:0000259|Pfam:PF04859} (Fragment))
HSP 1 Score: 637.106 bits (1642), Expect = 0.000e+0
Identity = 348/548 (63.50%), Postives = 405/548 (73.91%), Query Frame = 0
Match: A0A5B6YKI9 (DUF641 domain-containing protein {ECO:0000259|Pfam:PF04859} (Fragment))
HSP 1 Score: 637.106 bits (1642), Expect = 0.000e+0
Identity = 348/548 (63.50%), Postives = 405/548 (73.91%), Query Frame = 0
Query: 16 RSVTTKKKTNGVLKMDESTHKHHHRGYYRDPVVKQS-QVARKSSSTGIKKMAI------NKVSNFSDLIHRVTASCFLHPLAADRHHSSQISPSDDSDDSDDYPPNPRISEYLAQQEEDIENTENGSIARARRSDGEFG-----DVEVLIGEVFEAFSAVKKAYVSLQEAHCPWDPDRMRVCDAAVVAELRRIGVLRERFRRKN---------VGGERGRRVVGATLREVVAPYEAAVEELKRELKVKEVEVENLKDKLKNAVVVTGGSGGKKNGRGHHQSKRRVGCSTQTPVSLSPAPEVFEATMSMVREASKSFTALLLSLMKSAHWDITAAVRSIEAAA----GATTNATMDSIVGPNHAKYAMESYVNRKFFQGFDHETFYMDGSLSSLLHPDQFRRDCFTQYRDMKAMDPIELLGILPTCDFGKFCCKKYLSIIHPKMEESLFGDLEQRCQVLAGNHPRSRFYGDFLGLAKAIWLLHLLAFSLEPPPSYFEGSKGADFHSQYMESVVRFPGGRVVGGQVVGFPVSPGFKLASGSVIKARVYLV 538
RS +++KK + + ++ H R PV QS + + +S S+ + AI NKVSNFSDLI RVTASC LHPLAA R + +IS + D S+D E +EE+ E A+ ++GE ++E +IGEVFEA SA+K+AYVSLQ AHCPWDPD+MRV D AVVAELRR+ VLRERFRR + G R GATLREVVAPYEAAVEELKRE+K KEVEVENL++KLK A + GG + GR +HQSKRRV CS Q + +PAP++FE TMS+V EA+KSFTALLLSLM+SAHWDI AAVRSI AA+ TT+ + S+VG NHAKYA+ESYVNRK FQGFDHETFYMDGSLSSLLHPDQ+RRDCFTQYRDMKAMDP+ELLGILPTC FGKFC KKYLSIIHPKMEESLFGDLEQR QVLAGNHPRS+FYG+FLG+AKA+WLLHLLAFSL+PPPS+FE SKGA+FH QYMESVVRF GG G VVGFPVSPGFKL + SVIKARVYLV
Sbjct: 24 RSGSSRKKRSNRINVEPGNSDPHPR--LSVPVETQSARFSLRSESSNYRNGAIKAKKMANKVSNFSDLIQRVTASCLLHPLAAGRQEAEEISENRAGDGSED--------EIYKNEEEEGERGSFRVWDGAKEAEGEVRTERVIEMEFMIGEVFEAVSAMKRAYVSLQVAHCPWDPDKMRVADVAVVAELRRLAVLRERFRRSSPVGRECGGGGGRGRRIGTAGATLREVVAPYEAAVEELKREVKSKEVEVENLREKLKTAATLNGGGSNGRKGR-YHQSKRRVSCS-QVAAAPAPAPDIFEDTMSLVNEAAKSFTALLLSLMRSAHWDIGAAVRSIGAASLTATTPTTDTSPTSVVGANHAKYALESYVNRKIFQGFDHETFYMDGSLSSLLHPDQYRRDCFTQYRDMKAMDPMELLGILPTCAFGKFCSKKYLSIIHPKMEESLFGDLEQRRQVLAGNHPRSKFYGEFLGVAKAVWLLHLLAFSLDPPPSHFEASKGAEFHPQYMESVVRFSGGGAAVGLVVGFPVSPGFKLGNESVIKARVYLV 559
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5C674 | E-Value: 0.000e+0, PID: 70.45 | DUF641 domain-containing protein {ECO:0000259|Pfam... [more] |
| A0A1U8FNW5 | E-Value: 0.000e+0, PID: 66.46 | (IRK-interacting protein {ECO:0000313|RefSeq:XP_01... [more] |
| A0A6N2BKK1 | E-Value: 0.000e+0, PID: 65.65 | DUF641 domain-containing protein {ECO:0000259|Pfam... [more] |
| A0A2G3AA18 | E-Value: 0.000e+0, PID: 66.26 | DUF641 domain-containing protein {ECO:0000259|Pfam... [more] |
| A0A2G2XG02 | E-Value: 0.000e+0, PID: 66.26 | DUF641 domain-containing protein {ECO:0000259|Pfam... [more] |
| A0A3Q7FTR7 | E-Value: 0.000e+0, PID: 67.42 | DUF641 domain-containing protein {ECO:0000259|Pfam... [more] |
| A0A2G3D7H1 | E-Value: 0.000e+0, PID: 66.26 | DUF641 domain-containing protein {ECO:0000259|Pfam... [more] |
| M0ZMP5 | E-Value: 0.000e+0, PID: 65.98 | (GIL1 (GRAVITROPIC IN THE LIGHT) {ECO:0000313|Ense... [more] |
| A0A103Y6Z5 | E-Value: 0.000e+0, PID: 63.73 | DUF641 domain-containing protein {ECO:0000259|Pfam... [more] |
| A0A5B6YKI9 | E-Value: 0.000e+0, PID: 63.50 | DUF641 domain-containing protein {ECO:0000259|Pfam... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |