XM_017393383.1 | CarrotOmics

Resource Type:

Polypeptide

Name:

XM_017393383.1

Identifier:

XM_017393383.1-protein

Sequence:

MRTVALGLSLNSLSVNFNNTPSSTPPCRFPSHLSRSGICKASQVAELFPT
LSPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLLAMVMGF
SVPNGCQRTCLVAVTGSSDEDAFCIGSEDLKIGGFDGKFSLNKGYVTGIL
TVDTVADFLPRKGPLRNRRTGIAYVSNVAVRDRYRRKGIAKKLIIKAEAL
AKSWGCRAVALHCDLNNPGAVDLYKGQGFKSIKVPEGAKWPQPKTAPDVQ
FNFMMKILNT

Sequence Length:

260

Sequence Checksum:

f364a4c7d9742a8c81a8ce8024c7dda6

View location in JBrowse:

DCARv2_Chr5:36323961..36326633-

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, XM_017393383.1, derives from mRNA, XM_017393383.1.

Blast Results:

The following BLAST results are available for this feature:

BLAST of XM_017393383.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of XM_017393383.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10

[Close]

BLAST of XM_017393383.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251SKU9 ((Putative acyl-CoA N-acyltransferases (NAT) superfamily protein {ECO:0000313|EMBL:OTF99457.1}))

HSP 1 Score: 418.313 bits (1074), Expect = 5.200e-147
Identity = 200/268 (74.63%), Postives = 227/268 (84.70%), Query Frame = 0

Query:    1 MRTVALGLSLNSLSVNFNNTPSSTPPCRFPS-----HLSRS----GICKASQVAELFPTLSPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLLAMVMGFSVPNGCQRTCLVAVTGSSDEDAFCIGSEDLKIGGFDGKFSLNKGYVTGILTVDTVADFLPRKGPLRNRRTGIAYVSNVAVRDRYRRKGIAKKLIIKAEALAKSWGCRAVALHCDLNNPGAVDLYKGQGFKSIKVPEGAKWPQPKTAPDVQFNFMMKILN 259
            M T+ LG+S+   S NFN  P  +P  RFP      H+SRS    GICKASQ  E+FP +SPEIVVREAR+EDCWEVAETHCSSFFPEYSFPLDFVLR+DRLLA+V G SVPNGC+RTCLVAVTG+S++D FCIG EDLKI GF  K SLNKGYV GILT+DTVADFLPRKGPLR RRTGIAYVSNVAVR+R+RRKGIAKKLI KAEA A SWGCR++ALHCDLNNPGA +LY+ QGF+ IKVPEGAKWPQP+T+PD+QFNFMMK+L+
Sbjct:    1 MWTIPLGISI---SPNFNKLPLFSPSSRFPQSSLSHHISRSSDTTGICKASQAVEIFPIVSPEIVVREARIEDCWEVAETHCSSFFPEYSFPLDFVLRLDRLLALVFGLSVPNGCRRTCLVAVTGASEDDTFCIGDEDLKIAGFGAKISLNKGYVAGILTLDTVADFLPRKGPLRQRRTGIAYVSNVAVRERFRRKGIAKKLIAKAEAQAISWGCRSIALHCDLNNPGATNLYRSQGFRDIKVPEGAKWPQPRTSPDMQFNFMMKLLH 265

[Close]

BLAST of XM_017393383.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6Q827 (N-acetyltransferase domain-containing protein {ECO:0000259|PROSITE:PS51186})

HSP 1 Score: 417.542 bits (1072), Expect = 7.859e-147
Identity = 200/263 (76.05%), Postives = 225/263 (85.55%), Query Frame = 0

Query:    1 MRTVALGLSLNSLSVNFNNTP----SSTPPCRFPSHLSRSGICKASQVAELFPTLSPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLLAMVMGFSVPNGCQRTCLVAVTGSSDEDAFCIGSEDLKIGGFDGKFSLNKGYVTGILTVDTVADFLPRKGPLRNRRTGIAYVSNVAVRDRYRRKGIAKKLIIKAEALAKSWGCRAVALHCDLNNPGAVDLYKGQGFKSIKVPEGAKWPQPKTAPDVQFNFMMKILN 259
            M T+ LG+S+   S NFN  P    S +P      H+S+SGICKASQV E+FP +SPEIVVREAR+EDCWEVAETHCSSFFPEYSFPLDFVLRIDRLLA+V G SVPNGC+RTCLVAVTG+S++D   IG EDLKI GF  K SLNKGYV GILT+DTVADFLPRKGPLR RRTGIAYVSNVAVR+R+RRKGIAKKLI KAEA A SWGCR++ALHCDLNNPGA +LY+ QGFKSIKVPEGAKWPQP+T+PD+QFNFMMKIL+
Sbjct:    1 MWTIPLGISV---SPNFNKLPLFYPSRSPQSSLSHHISKSGICKASQVVEIFPLVSPEIVVREARIEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLLALVFGLSVPNGCRRTCLVAVTGASEDDTIFIGDEDLKIAGFGAKISLNKGYVAGILTLDTVADFLPRKGPLRQRRTGIAYVSNVAVRERFRRKGIAKKLIAKAEAQAISWGCRSIALHCDLNNPGATNLYRNQGFKSIKVPEGAKWPQPRTSPDMQFNFMMKILH 260

[Close]

BLAST of XM_017393383.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835JY04 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9676681.1}))

HSP 1 Score: 418.313 bits (1074), Expect = 1.112e-146
Identity = 204/283 (72.08%), Postives = 228/283 (80.57%), Query Frame = 0

Query:    1 MRTVALGLSLNSLSVNFNN--------------------TPSSTPPCRFP---SHLSRSGICKASQVAELFPTLSPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLLAMVMGFSVPNGCQRTCLVAVTGSSDEDAFCIGSEDLKIGGFDGKFSLNKGYVTGILTVDTVADFLPRKGPLRNRRTGIAYVSNVAVRDRYRRKGIAKKLIIKAEALAKSWGCRAVALHCDLNNPGAVDLYKGQGFKSIKVPEGAKWPQPKTAPDVQFNFMMKILNT 260
            MR++ LG S++  S+N +N                    T SST   R     S L +SG+C+ASQVAE FP +SPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRL AM+ GFS+PNGC+RTCLVAV GSS    F IGSED KIGGFDGKFSLN+GYVTGILTVDTVADFLPRKGPLR RRTGIAY+SNVAVR+RYRRKGIAK+LI KAEA A+SWGCR++ALHCDLNNPGA  LYKGQGFK IK PEGA WPQPKT+PD++FNFMMK+LNT
Sbjct:    1 MRSIPLGFSVSPTSINNSNLNFNLKKQKQQRQQQNQSFFTSSSTRVSRHELALSSLPKSGLCRASQVAEFFPVVSPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLAAMLSGFSIPNGCRRTCLVAVIGSSVNQTFYIGSEDFKIGGFDGKFSLNRGYVTGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVRERYRRKGIAKRLIAKAEAQARSWGCRSIALHCDLNNPGATKLYKGQGFKCIKAPEGANWPQPKTSPDIKFNFMMKLLNT 283

[Close]

BLAST of XM_017393383.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AVU0 (N-acetyltransferase domain-containing protein {ECO:0000259|PROSITE:PS51186})

HSP 1 Score: 417.927 bits (1073), Expect = 1.540e-146
Identity = 201/274 (73.36%), Postives = 225/274 (82.12%), Query Frame = 0

Query:    1 MRTVALGLSL------NSLSVNFNNTPSSTPPCRFPS--------HLSRSGICKASQVAELFPTLSPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLLAMVMGFSVPNGCQRTCLVAVTGSSDEDAFCIGSEDLKIGGFDGKFSLNKGYVTGILTVDTVADFLPRKGPLRNRRTGIAYVSNVAVRDRYRRKGIAKKLIIKAEALAKSWGCRAVALHCDLNNPGAVDLYKGQGFKSIKVPEGAKWPQPKTAPDVQFNFMMKILNT 260
            MRT+ LG S+      NSLS+N    P    P R P         HL +SG+C+ASQV ELFP +SPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRL++M+ GFSVPNGC+RTCLVAV GSS +D F  GSED K+GGFD KFSLNK YV GILTVDTVADFLPRKGPLR RR+GIAY+SNVAVR+R+RRKGIAK+L+ KAEA A+SWGCR +ALHCDLNNPGA  LYKGQGFK IKVPEGA WPQP+T+PD QFNFMMK+LNT
Sbjct:    1 MRTIPLGTSVSPTTSVNSLSLNVKKLPF---PSRVPRSTDEPPLPHLPKSGLCRASQVVELFPIVSPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLMSMLSGFSVPNGCRRTCLVAVIGSSVDDTFLFGSEDFKVGGFDAKFSLNKRYVAGILTVDTVADFLPRKGPLRQRRSGIAYISNVAVRERFRRKGIAKRLVAKAEAQARSWGCRTIALHCDLNNPGATKLYKGQGFKCIKVPEGANWPQPRTSPDTQFNFMMKLLNT 271

[Close]

BLAST of XM_017393383.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YJZ4 (N-acetyltransferase domain-containing protein {ECO:0000259|PROSITE:PS51186})

HSP 1 Score: 416.772 bits (1070), Expect = 2.406e-146
Identity = 202/274 (73.72%), Postives = 226/274 (82.48%), Query Frame = 0

Query:    1 MRTVALGLS------LNSLSVNFNNTPSSTPPCRFP--------SHLSRSGICKASQVAELFPTLSPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLLAMVMGFSVPNGCQRTCLVAVTGSSDEDAFCIGSEDLKIGGFDGKFSLNKGYVTGILTVDTVADFLPRKGPLRNRRTGIAYVSNVAVRDRYRRKGIAKKLIIKAEALAKSWGCRAVALHCDLNNPGAVDLYKGQGFKSIKVPEGAKWPQPKTAPDVQFNFMMKILNT 260
            MRT+ LG S      +N+LS+N    P   P  R P        SHL +SG+C+ASQ  E FPT+SPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDF+LRIDRL+A+V GFSVPNGC+RTCLVAV GSS +D+F  GSED K+GGFDGKFSLNK YV GILTVDTVADFLPRKGPLR RRTGIAY+SNVAVR+++RRKGIAK+LI KAEA A+SWGCRA+ALHCDL NPGA  LYKGQ FK IKVPEGA WPQPKT+PD QFNFMMK+LNT
Sbjct:    1 MRTIPLGTSVSPTTSINTLSLNVKKLPIPFP-SRVPRSTDEPSLSHLPKSGLCRASQAVEFFPTVSPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFMLRIDRLVAVVSGFSVPNGCRRTCLVAVIGSSVDDSFLFGSEDFKVGGFDGKFSLNKKYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARSWGCRAIALHCDLKNPGATKLYKGQDFKCIKVPEGANWPQPKTSPDTQFNFMMKLLNT 273

[Close]

BLAST of XM_017393383.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J6H1N8 (N-acetyltransferase domain-containing protein {ECO:0000259|PROSITE:PS51186})

HSP 1 Score: 416.772 bits (1070), Expect = 4.542e-146
Identity = 197/284 (69.37%), Postives = 235/284 (82.75%), Query Frame = 0

Query:    1 MRTVALGLSLNSLSVNFNNTPSSTP----------PCRFPS---------------HLSRSGICKASQVAELFPTLSPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLLAMVMGFSVPNGCQRTCLVAVTGSSDEDAFCIGSEDLKIGGFDGKFSLNKGYVTGILTVDTVADFLPRKGPLRNRRTGIAYVSNVAVRDRYRRKGIAKKLIIKAEALAKSWGCRAVALHCDLNNPGAVDLYKGQGFKSIKVPEGAKWPQPKTAPDVQFNFMMKILN 259
            MRTV+LGLS +S ++N + T ++TP          P  +PS                LS+SG+C+ASQV +LFPT+SPEIVVREARLEDCWEVAETHCSSFFPEY+FPLDFVLRIDR++ M+ GFS+PNGC+RTCLVAVT SS ++ F +G++DLKIGGFDGK SLNKGYVTGILTVDTVADFLPRKGPLR RRTGIAY+SNVAVR+++RRKGIAK+L+ KAE+ A+ WGCRA+ALHCDLNNPGA  LYK QGF+SIKVP+GA WPQPKT+PDV+FNFMMK+LN
Sbjct:    1 MRTVSLGLSASSTAINCSATATATPSLLNSFNSNKPNPYPSPLPRDFNSTHQISLLSLSKSGVCRASQVVDLFPTVSPEIVVREARLEDCWEVAETHCSSFFPEYAFPLDFVLRIDRIVGMLAGFSIPNGCKRTCLVAVTSSSLDETFLLGTQDLKIGGFDGKISLNKGYVTGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKQLVAKAESHAQRWGCRAIALHCDLNNPGATKLYKSQGFRSIKVPDGAAWPQPKTSPDVKFNFMMKLLN 284

[Close]

BLAST of XM_017393383.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J6HGA4 (N-acetyltransferase domain-containing protein {ECO:0000259|PROSITE:PS51186})

HSP 1 Score: 416.387 bits (1069), Expect = 5.973e-146
Identity = 197/284 (69.37%), Postives = 235/284 (82.75%), Query Frame = 0

Query:    1 MRTVALGLSLNSLSVNFNNTPSSTP----------PCRFPS---------------HLSRSGICKASQVAELFPTLSPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLLAMVMGFSVPNGCQRTCLVAVTGSSDEDAFCIGSEDLKIGGFDGKFSLNKGYVTGILTVDTVADFLPRKGPLRNRRTGIAYVSNVAVRDRYRRKGIAKKLIIKAEALAKSWGCRAVALHCDLNNPGAVDLYKGQGFKSIKVPEGAKWPQPKTAPDVQFNFMMKILN 259
            MRTV+LGLS +S ++N + T ++TP          P  +PS                LS+SG+C+ASQV +LFPT+SPEIVVREARLEDCWEVAETHCSSFFPEY+FPLDFVLRIDR++ M+ GFS+PNGC+RTCLVAVT SS ++ F +G++DLKIGGFDGK SLNKGYVTGILTVDTVADFLPRKGPLR RRTGIAY+SNVAVR+++RRKGIAK+L+ KAE+ A+ WGCRA+ALHCDLNNPGA  LYK QGF+SIKVP+GA WPQPKT+PDV+FNFMMK+LN
Sbjct:    1 MRTVSLGLSASSTAINCSATATATPSLLNSFNPNKPNPYPSPLPRVFNSTHPISLLSLSKSGVCRASQVVDLFPTVSPEIVVREARLEDCWEVAETHCSSFFPEYAFPLDFVLRIDRIVGMLAGFSIPNGCKRTCLVAVTSSSLDETFLLGTQDLKIGGFDGKISLNKGYVTGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKQLVAKAESHAQRWGCRAIALHCDLNNPGATKLYKSQGFRSIKVPDGAAWPQPKTSPDVKFNFMMKLLN 284

[Close]

BLAST of XM_017393383.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7TM88 (N-acetyltransferase domain-containing protein {ECO:0000259|PROSITE:PS51186})

HSP 1 Score: 415.616 bits (1067), Expect = 6.053e-146
Identity = 204/267 (76.40%), Postives = 228/267 (85.39%), Query Frame = 0

Query:    1 MRTVALGLSLNSLSVNFN-----NTPSST--PPCRFPSHLSRSGICKASQVAELFPTLSPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLLAMVMGFSVPNGCQRTCLVAVTGSSDEDAFCIGSEDLKIGGFDGKFSLNKGYVTGILTVDTVADFLPRKGPLRNRRTGIAYVSNVAVRDRYRRKGIAKKLIIKAEALAKSWGCRAVALHCDLNNPGAVDLYKGQGFKSIKVPEGAKWPQPKTAPDVQFNFMMKILNT 260
            MRT+ LG+SL S +   +     N+P +T   P R  S+  +SGIC+ASQVAELFPT+ PEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLLAM  GFS+PNGC+RTCLVAV G S +D F +GSED KIGGFDGKFS NKGYV GILTVDTVADFLPRKGPLR RR+GIAY+SNVAVR+ +RRKGIAK+LI+KAEA A+SWGCRAVALHCDLNNPGA  LYKGQGFK IKVPEGA WPQPKT+PD+QF FMMK+LNT
Sbjct:    1 MRTLPLGVSLVSPTTTTSTATPINSPLTTIKKPSRV-SNFPKSGICRASQVAELFPTVLPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLLAMFAGFSLPNGCRRTCLVAVIGGSADDTFFLGSEDFKIGGFDGKFSFNKGYVAGILTVDTVADFLPRKGPLRQRRSGIAYISNVAVRETFRRKGIAKRLIVKAEAQARSWGCRAVALHCDLNNPGATKLYKGQGFKCIKVPEGANWPQPKTSPDIQFGFMMKLLNT 266

[Close]

BLAST of XM_017393383.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5THV9 ((uncharacterized protein LOC110767540 {ECO:0000313|RefSeq:XP_021826809.1}))

HSP 1 Score: 416.387 bits (1069), Expect = 7.273e-146
Identity = 201/289 (69.55%), Postives = 235/289 (81.31%), Query Frame = 0

Query:    1 MRTVALGLSLNSLSVN------FNNT-----------PSSTPPCRFPSH------------LSRSGICKASQVAELFPTLSPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLLAMVMGFSVPNGCQRTCLVAVTGSSDEDAFCIGSEDLKIGGFDGKFSLNKGYVTGILTVDTVADFLPRKGPLRNRRTGIAYVSNVAVRDRYRRKGIAKKLIIKAEALAKSWGCRAVALHCDLNNPGAVDLYKGQGFKSIKVPEGAKWPQPKTAPDVQFNFMMKILNT 260
            MRT+ LG+S+++ S+N      F N+            S++   R P+              S+SG+C+ASQVA+LFPT+SPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRL+AM+ GFS+PNGC+RTCLVAV G+S ++ F  GSED KIGGFDGKFSLN+ YV GILTVDTVADFLPRKGPLR RRTG+AYVSNVAVR+R+RR+GIAK+LI KAEA A+SW CRA+ALHCDLNNPGA+ LYKGQGF+SIKVPEGA WPQPKTAPDV+FNFMMK+LNT
Sbjct:    1 MRTIPLGISVSTTSINSSSKTTFLNSLNLKRPNPLPLTSTSTSSRVPASTSTEDDDFSFLSFSKSGVCRASQVADLFPTVSPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLVAMLAGFSLPNGCKRTCLVAVIGNSVDETFLFGSEDFKIGGFDGKFSLNRRYVAGILTVDTVADFLPRKGPLRQRRTGVAYVSNVAVRERFRRRGIAKRLIAKAEAQARSWDCRAIALHCDLNNPGAIKLYKGQGFRSIKVPEGANWPQPKTAPDVRFNFMMKLLNT 289

[Close]

BLAST of XM_017393383.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A315A3J6 (N-acetyltransferase domain-containing protein {ECO:0000259|PROSITE:PS51186})

HSP 1 Score: 416.387 bits (1069), Expect = 7.273e-146
Identity = 201/289 (69.55%), Postives = 235/289 (81.31%), Query Frame = 0

Query:    1 MRTVALGLSLNSLSVN------FNNT-----------PSSTPPCRFPSH------------LSRSGICKASQVAELFPTLSPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLLAMVMGFSVPNGCQRTCLVAVTGSSDEDAFCIGSEDLKIGGFDGKFSLNKGYVTGILTVDTVADFLPRKGPLRNRRTGIAYVSNVAVRDRYRRKGIAKKLIIKAEALAKSWGCRAVALHCDLNNPGAVDLYKGQGFKSIKVPEGAKWPQPKTAPDVQFNFMMKILNT 260
            MRT+ LG+S+++ S+N      F N+            S++   R P+              S+SG+C+ASQVA+LFPT+SPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRL+AM+ GFS+PNGC+RTCLVAV G+S ++ F  GSED KIGGFDGKFSLN+ YV GILTVDTVADFLPRKGPLR RRTG+AYVSNVAVR+R+RR+GIAK+LI KAEA A+SW CRA+ALHCDLNNPGA+ LYKGQGF+SIKVPEGA WPQPKTAPDV+FNFMMK+LNT
Sbjct:    1 MRTIPLGISVSTTSINSSSKTTFLNSLNLKRPNPLPLTSTSTSSRVPASTSTEDDDFSFLSFSKSGVCRASQVADLFPTVSPEIVVREARLEDCWEVAETHCSSFFPEYSFPLDFVLRIDRLVAMLAGFSLPNGCKRTCLVAVIGNSVDETFLFGSEDFKIGGFDGKFSLNRRYVAGILTVDTVADFLPRKGPLRQRRTGVAYVSNVAVRERFRRRGIAKRLIAKAEAQARSWDCRAIALHCDLNNPGAIKLYKGQGFRSIKVPEGANWPQPKTAPDVRFNFMMKLLNT 289


Match Name	Stats	Description
A0A251SKU9	E-Value: 5.200e-147, PID: 74.63	(Putative acyl-CoA N-acyltransferases (NAT) superf... [more]
A0A5N6Q827	E-Value: 7.859e-147, PID: 76.05	N-acetyltransferase domain-containing protein {ECO... [more]
A0A835JY04	E-Value: 1.112e-146, PID: 72.08	(Uncharacterized protein {ECO:0000313\|EMBL:KAF9676... [more]
A0A5J5AVU0	E-Value: 1.540e-146, PID: 73.36	N-acetyltransferase domain-containing protein {ECO... [more]
A0A5B6YJZ4	E-Value: 2.406e-146, PID: 73.72	N-acetyltransferase domain-containing protein {ECO... [more]
A0A7J6H1N8	E-Value: 4.542e-146, PID: 69.37	N-acetyltransferase domain-containing protein {ECO... [more]
A0A7J6HGA4	E-Value: 5.973e-146, PID: 69.37	N-acetyltransferase domain-containing protein {ECO... [more]
D7TM88	E-Value: 6.053e-146, PID: 76.40	N-acetyltransferase domain-containing protein {ECO... [more]
A0A6P5THV9	E-Value: 7.273e-146, PID: 69.55	(uncharacterized protein LOC110767540 {ECO:0000313... [more]
A0A315A3J6	E-Value: 7.273e-146, PID: 69.55	N-acetyltransferase domain-containing protein {ECO... [more]

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.