XM_017397765.1

Resource Type: 
Polypeptide
Name: 
XM_017397765.1
Identifier: 
XM_017397765.1-protein
Sequence: 
MAGVKQELGMVGGEVLDSGVVGESLEMGQDGSFGGVGVEDGFREVGSDVG
RDGFQEVVGKSFEVGREDSCRETNGEDGVGKFGSLIEEEMGKVSLDESGG
NGVGEGLGDIEKVVMCEMEDGLEGLERSDKLVGVEGSELERGEMGNVECG
GEKSCEIDGAEGGGIEKPCFNGKLGDSGNTLTIDGVGTKIGGNMSDEDDS
ESESESETSGSSSSSSSSSSSSSEDDDEDDDDVKEVEEGEIDIEEGEIRD
SVEDEMTAWSDEDEEFGIAMAGPIMSANEVKVLPPVPPVDVTLQPCHVTL
PVGVVLSIVGTQVIVEGVEKHDPLNEGSILWITEKRSPLGIVDEIFGPVK
NPYYIVRYNSENEVPVGIQQGTSVSFVPEFVNHILNNGNLYKKGYDASGE
NDEEISEEAEFSDDEKEAEYKRLQKMSKRGPKDQTLENRKRNKNKSKRRG
GQWGGDQHSSAKEPNERVVQAPSIQNQHFRPPLSVNQGNSSNSMRPVQAF
AGGPGLVPVFPQAPQVPGFVAPSSGVWMNGIPCQPPQSTFSNGPTPNNML
QLQQNQAQQPYHMPPFNGMPLQQFSTGQMMPPNFVFPGGHPGFSMGAFTP
MNQMMFSQNNFGQLQAGASQNNFSQLHVAAAQNNFNHSQAAMNMQQQHAI
NMQGQLPMNFGQSNAAVGMQGQHAPSIVNNGDQGVLPKENQNEQNGSSQP
LPATPPSTGGPQNFSSGVKFGRGRNSYQRGGGRFGGRGGRGRGRGRQQPR
Sequence Length: 
750
Sequence Checksum: 
12e3996df22f18eb9743faba73761380
View location in JBrowse: 
DCARv2_Chr5:37005769..37009475+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017397765.1, derives from mRNA, XM_017397765.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017397765.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017397765.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BRW9 (H/ACA ribonucleoprotein complex non-core subunit NAF1 {ECO:0000256|ARBA:ARBA00021438})

HSP 1 Score: 459.144 bits (1180), Expect = 7.053e-149
Identity = 321/727 (44.15%), Postives = 406/727 (55.85%), Query Frame = 0
 
Query:   48 DVGRDGFQEVVGKSFEVGREDSCRETN----GEDGVGKFGSLIEEEMGKVSLD-ESGGNGVGEGLGDIEKVVMCEMEDGLEGLERSDKLVGVEGSELERGEM--GNVECGGEKSCEIDGAEGGGI----------------EKPCFNGKLGDSGNTLTIDGVGTKIGGNMS------------------DEDDSESESESETSGSSSSSSSSSSSSSEDDDEDDDDVKEVEEGEIDIEEGEIRDSVEDEMTAWSD-EDEEFGIAMAGPIMSANEVKVLPPVPPVDVTLQPCHVTLPVGVVLSIVGTQVIVEGVEKHDPLNEGSILWITEKRSPLGIVDEIFGPVKNPYYIVRYNSENEVPVGIQQGTSVSFVPEFVNHILNNGNLYKKGYDASGENDEEISEEAEFSDDEKEAEYKRLQKMSKRGPKDQTLENRKRNKNKSKRRGGQWGGDQHSSAKEPNERVVQAPSIQNQHFRPP---LSVNQGNSSNSMRPVQAFAGGPGLVPVFPQAPQVPGFVAPSSGVWMNGIPCQPPQST-FSNGPTPNNMLQLQQNQAQQPYHMPPFNGMPL-QQFSTGQMMPPNFVFPGGHPGFSMGAFTPMNQMMFSQNNFGQLQAGASQNNFSQLHVAAAQNNFNHSQAAMNMQQQHAINMQGQLPMNFGQSNAAVGMQGQHAPSIVNNGDQGVLPKENQNEQNGSSQPLPATPPSTGGPQNFSSGVKFGRGRNSY 727
            D+G+  F  VV K  E+  + SCRET+      D  G  GSLIEEEMGKV L+    G+ V +G G                  +S+++VGV+G+ +   E+  GN    G  S EI G  G G+                E    +G    SG  + ++G G K G  +S                      S S SE +                E+++E +++ K   E E+D+EEGEIRDSV +EM  WSD ED+E G  + GPI S NE+KVLP VPPV+VTLQP H TLPVGVVLSI+G+QVIVEGVEKH+PLNEGSILWITE+RSPLG+VDEIFGPVKNPYY+VRYNS+N+VP GI QGT VSFVPEFVNH+LN+ NLYKKGYDASG+NDE +S+E EFSDDEKEAEY+R+ KM+KRG  +Q  EN+K+ + K   RGG     Q S+ + P   V Q P  Q++ + PP   +SV   N  +S    Q  + GPG V  FPQ  Q PGF APS+GVW+NG+PCQP QS  F N    N M  LQQ+  QQ Y+MP  NGMP  QQF   Q +P N VFPGGH  FS G                          F+   ++  Q+ +N                  QLP  FG     +G+Q  +A   +N G+QGV P     E+N   +P   +P +T   QNF+ G   GRGR SY
Sbjct:   75 DLGKVVFG-VVDKRIEMAEDGSCRETSVGDPTGDCSGNLGSLIEEEMGKVKLECPLDGSVVVDGNG-----------------VKSERIVGVDGNGVASIEISTGNGNGNGAVSVEIMGFNGNGVKSVETVSVDGNGAKSDEVLGIDGNCARSGEIVRVNGDGPKSGEVVSAVDESDSSSESESESSSSSSSASSSSSEDDDYEEEEEEEEDDEEDVEEEEEKEEEEKGEVEREMDMEEGEIRDSVVEEMVTWSDGEDDEGGEVIKGPIRSKNELKVLPLVPPVNVTLQPYHQTLPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWITEQRSPLGLVDEIFGPVKNPYYMVRYNSDNDVPAGIGQGTLVSFVPEFVNHVLNDNNLYKKGYDASGDNDEPLSDEVEFSDDEKEAEYRRMLKMTKRGMNNQKHENKKKERKKFNNRGGTCRNGQPSTTEVPT-GVCQPPVDQHKLYIPPAAAVSVYHDNCRSSSGTGQGLS-GPGFVAPFPQLAQAPGFTAPSTGVWINGMPCQPQQSMGFPNSYPTNGMPWLQQSHHQQSYNMPLPNGMPFQQQFDPSQRLPVNAVFPGGHSNFSAGP------------------------GFAPWPLSMGQSGYN------------------QLP--FG-----MGLQVHNARPPINVGEQGV-PSNGSQERNCDMRPPFVSPGNTQVCQNFNQGAYSGRGRKSY 731
[Close]
BLAST of XM_017397765.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A314 (H/ACA ribonucleoprotein complex non-core subunit NAF1 {ECO:0000256|ARBA:ARBA00021438})

HSP 1 Score: 436.417 bits (1121), Expect = 1.718e-140
Identity = 331/706 (46.88%), Postives = 410/706 (58.07%), Query Frame = 0
 
Query:   48 DVGRDGFQEVVGKSFEVGREDSCRETNGED-------GVGKFGSLIEEEMGKVSLDESGGNGVGEGLGDIEKVVMCEMEDGLEGLE----RSDKLVGVEGSELERGEMGNVECGGEKSCEIDGAEGGGIEKPCFNGKLGDSGNTLTIDGVGTKIGGNMS------DEDDSESESESETSGSSSSSSSSSSSSSEDDDEDDDDVKEVEEGEIDIEEGEIRDSVEDEMTAWSD-EDEEFGIAMAGPIMSANEVKVLPPVPPVDVTLQPCHVTLPVGVVLSIVGTQVIVEGVEKHDPLNEGSILWITEKRSPLGIVDEIFGPVKNPYYIVRYNSENEVPVGIQQGTSVSFVPEFVNHILNNGNLYKKGYDASGENDEEISEEAEFSDDEKEAEYKRLQKMSKRGPKDQTLENRKRNKNKSKRRGGQWGGDQHSSAKEPNERVVQAPSIQNQHFRPP--LSVNQGNSSNSMRPVQAFAGGPGLVPVFPQAPQVPGFVAPSSGVWMNGIPCQPPQST-----FSNGPTPNNMLQLQQNQAQQPYHMPPFNGMPL-QQFSTGQMMPPNFVFPGGHPGFSMGAFTPMNQMMFSQNNFGQLQAGASQNNFSQLHVAAAQNNFNHSQAAMNMQQQHAINMQGQLPMNFGQSNAAVGMQGQHAPSIVNNGDQGVLPKENQNEQNGSSQPLPATPPSTGGPQNFSSGVKFGRGRNSY 727
            D+G+  F  VV K  E+  + S RET   D        +G  GSLIEEEMGKV L+                   C + DG   ++    +S+++VGV+G+     E  N      +S EI G          FNG    SG+ + ++G G K G  +S      D  +SESES S +S +SSSSS       +D++E++++ +E ++GE+D+EEGEIRDS   EM  WSD EDE+ G  M GPI S NE+KVLPPVPPV+VTLQP H TLPVGVVLSI+GTQVIVEGVEKH+PLNEGSILWITEKRSPLG+VDEIFGPVKNPYY+VRYNS+NEVP GI QGT VSFVPEFVNH+LN+ NLYKKGYDASG+NDEE+S+E EFSDDEKEAEY+R++KM+KRG  DQ  EN+K+ KN  K R G W   Q S++  P   V Q P  QN+ + PP  +SV  GN  +S    Q FA GPG VP FPQ  Q PGF APS+ VWMNG+ CQ  QS      +   PT N M  +QQ++ QQ Y+MP  NGMP  QQF   Q +  N V PGG   FS+G                          F+    A  Q+ FN S   M                         G+QG +A   +N G+QGV     Q   N   QP      +T  PQNF+ G  FGRG+  Y
Sbjct:   75 DLGKVEFG-VVKKRLEMAEDGSFRETTAGDPLGDCSGTLGNLGSLIEEEMGKVKLE-------------------CPL-DGSVAVDGYGVKSERIVGVDGNGAVSIESSNGNGKSAESVEIMG----------FNGNGARSGDLVCVNGDGPKSGTIVSAGDKSDDSSESESESSSSSSSASSSSSDDDDDDDDDEEEEEEEKEEEKKGEVDMEEGEIRDSDVTEMFTWSDGEDEDGGDVMKGPIRSKNEIKVLPPVPPVNVTLQPYHQTLPVGVVLSIIGTQVIVEGVEKHNPLNEGSILWITEKRSPLGLVDEIFGPVKNPYYVVRYNSDNEVPAGIGQGTLVSFVPEFVNHVLNDNNLYKKGYDASGDNDEELSDEMEFSDDEKEAEYRRMRKMTKRGMNDQKHENKKKEKNNFKNRSGTWRNGQPSTSAVPT-GVCQPPVDQNKLYIPPAAVSVYHGNYGSSFGTGQGFADGPGFVPPFPQLAQAPGFTAPSNCVWMNGMACQQQQSMGFPSGYPTNPT-NVMPWMQQSRHQQSYNMPLPNGMPFQQQFDPSQRV--NVVLPGGQSNFSVGP------------------------PFAPWSSAMGQSGFNQSPFGM-------------------------GVQGHNAHPPINGGEQGVPSNGLQQGHNCDLQPPFVIQCNTEVPQNFNQGRYFGRGKKPY 696
[Close]
BLAST of XM_017397765.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QX12 (H/ACA ribonucleoprotein complex non-core subunit NAF1 {ECO:0000256|ARBA:ARBA00021438})

HSP 1 Score: 404.445 bits (1038), Expect = 1.571e-128
Identity = 282/563 (50.09%), Postives = 360/563 (63.94%), Query Frame = 0
 
Query:   66 REDSCRETNGEDGVGKFGSL---IEEEMGKVSLDESGGNGVGEGLGDIEKVVMCEMEDGLEG-LERSDKLVGVEGSELERGEMGNVECGGEKSCEIDGAEGGGIEKPCFNGKLGDSGNTLT-IDGVGTKIGGNMSDEDDSESESESETSGSSSSSSSSSSSSSEDDDEDDDDVKEVEEGEIDIEEGEIRDSVEDEMTAWSDEDEE--FGIAMAGPIMSANEVKVLPPVPPVDVTLQPCHVTLPVGVVLSIVGTQVIVEGVEKHDPLNEGSILWITEKRSPLGIVDEIFGPVKNPYYIVRYNSENEVPVGIQQGTSVSFVPEFVNHILNNGNLYKKGYDASGENDEEISEEAEFSDDEKEAEYKRLQKMSKRGPKDQTLENRKRNKNKSKRRGGQWGGDQHSSAKEPNERVVQAPSIQNQHFRPP---LSVNQGNSSNSMRPVQAFAGGPGLVPVFPQAPQVPGFVAPSSGVWMNGIPCQPPQS---TFSNGPTPNNMLQLQQNQAQQPYHMPPFNGMPL-QQFSTGQMMPPNFVFPGGHPGFSMGA-FTPMNQMMFSQNNFGQ 613
            ++ SC ET   DG  KFG+L   IEEE+GK SLD           G ++ + M      + G   +S  +VG++ + ++ GE   V+ GG KS E  G +  G +          SG  +  ++G  ++   N  DE DS S+S+S +S SSSSSSSS +    +D+E+++  ++  EGEID+EEGEIRDS  ++M +WSDEDE+   G    GPI S NE++VLPPVPPV VTLQP H TLPVGV+LSI+G QVIVEG+EKH+PLNEGSILWITE R+PLG+VDEIFGPVKNPYY++RYNSENE+P G++QGTS+SFVPEF +H+LN+ NLYKKGYDASGENDEEI++E EFSDDEKEAEYKR+QKM+KRG  +  L+   +++ K +  GG W  +   S  +  E V + P  QNQH  PP    ++  G+SS+S+   Q F G P LVP FPQ  Q PGF+ PSSGVW NG+PC   Q     F  G   N M  LQQN  QQ   MP  NGMP  QQF   QM+ PN V  GG   F  G  F P        N+F Q
Sbjct:   75 KDGSCGETEIGDGFWKFGNLSASIEEEIGKFSLD-----------GGLDSLAMSVQSPSVCGKASKSVDIVGLDENVVKSGETVIVDGGGLKSGETLGTDESGKK----------SGEIVANVEGQKSEEMENDEDESDSASDSDSSSSSSSSSSSSSEAEDDNEDEEEEEKGEKELEGEIDMEEGEIRDSDVEKMVSWSDEDEDGGDGSIAKGPIRSKNELQVLPPVPPVYVTLQPHHQTLPVGVILSILGPQVIVEGLEKHNPLNEGSILWITESRTPLGLVDEIFGPVKNPYYMIRYNSENEIPAGVKQGTSISFVPEFADHVLNDSNLYKKGYDASGENDEEIADEFEFSDDEKEAEYKRMQKMTKRGGTN-GLKLGNKDRKKFENHGGAWRQNNQPSTPQTPEGVSRPPINQNQHHNPPPLTAALRHGDSSHSLGTGQGFVGSPSLVPPFPQLFQAPGFIPPSSGVWTNGVPCDQQQQQGMVFPVGVLTNGMPWLQQNPLQQSPQMPLPNGMPFQQQFVPSQMLRPNLVSSGGQSNFGAGTGFGPWRGGCLGPNSFNQ 615
[Close]
BLAST of XM_017397765.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QC87 (H/ACA ribonucleoprotein complex non-core subunit NAF1 {ECO:0000256|ARBA:ARBA00021438})

HSP 1 Score: 395.586 bits (1015), Expect = 1.494e-124
Identity = 279/594 (46.97%), Postives = 352/594 (59.26%), Query Frame = 0
 
Query:   69 SCRETNGEDGVGKFGSL---IEEEMGKVSLDESGGNGVGEGLGDIEKVVMC---EMEDGLEGLERSDKLVGVEGSELERGE-MGNVECGGEKSCEIDGAEGGGIEKPCFNGKLGDSGNTLTIDGVGTKIGGNMSDEDDSESE---------------------SESETSGSSSSSSSSSSSSSEDDDEDDDDVKEVEEGEIDIEEGEIRDSVEDEMTAWSDEDEEFGIAMA-----GPIMSANEVKVLPPVPPVDVTLQPCHVTLPVGVVLSIVGTQVIVEGVEKHDPLNEGSILWITEKRSPLGIVDEIFGPVKNPYYIVRYNSENEVPVGIQQGTSVSFVPEFVNHILNNGNLYKKGYDASGENDEEISEEAEFSDDEKEAEYKRLQKMSKR----GPKDQTLENRKRNKNKSKRRGGQWGGDQHSSAKEPNERVVQAPSIQNQHFRPP---LSVNQGNSSNSMRPVQAFAGGPGLVPVFPQAPQVPGFVAPSSGVWMNGIPCQPPQS-------TFSNGPTPNNMLQLQQNQAQQPYHMPPFNGMPL-QQFSTGQMMPPNFVFPGGHPGFSMGA-FTPMNQMMFSQNNFGQ 613
            SC ET   DG  K G L   IEE++ K SLD     G+      ++   +C        + G++  D++V V G  L+ GE +GN      KS +I G +  G E    NG +  SG TL  D    K G  +++ +  +SE                     S S +S S             D++E +++ +E   GEID+EEGEIRDS  ++M AWS ++ +           GPI S NE++VLPPVPPV+VTLQP H T PVGV+LSI+G QVIVEGVEKH+PLNEGSILWITE R+PLG+VDEIFGPVKNPYY++RYNSENE+P G++QGT +SFVPEF +H+LN+ NLYKKGYDASGENDEEI++E EFSDDEKEAEYKR+QKM+KR    GPK   L N+K++  K + RGG W  +   S  +  E V + P  +NQH  PP    ++  G+SS+S    Q FAG P LVP FPQ  Q  GF+ PSSGVW NG+PC+  Q         F  G   N M  LQQN  QQ   MP  +GMP  QQF  GQM+PPN V PGG   F  G  F P     F QN+F Q
Sbjct:   78 SCGETEIGDGFRKLGDLSASIEEKIVKFSLD----GGLDSLDTSVQPPSVCGNASKSVDIVGVDEKDEIVSVNGGVLKSGETLGN----ASKSVDIVGVDEKG-EIVSVNGGVLKSGETLGTDESDKKSGETVANGECQKSEEMVSDEDESQSASDSDSSSSSSSSSSSSSEEEDDDEDEEEETDEEEKEEEDEEELVGEIDMEEGEIRDSDVEKMMAWSGDEGDEEDGGDGSIGKGPIRSKNELQVLPPVPPVNVTLQPHHQTQPVGVILSILGPQVIVEGVEKHNPLNEGSILWITESRTPLGLVDEIFGPVKNPYYMIRYNSENEIPAGVKQGTPISFVPEFADHVLNDSNLYKKGYDASGENDEEIADEFEFSDDEKEAEYKRMQKMTKRGGTNGPK---LGNKKKDMKKFENRGGAWRQNNQPSTPQTPEGVSRPPINRNQHRNPPPPTATLYHGDSSHSFGTGQGFAGSPSLVPPFPQLFQASGFIPPSSGVWTNGVPCEQQQQQQQPQGMVFPVGVPTNGMPWLQQNPLQQTPQMPLPSGMPFQQQFVPGQMLPPNLVSPGGQSNFGAGTGFVPW-PGCFGQNSFNQ 658
[Close]
BLAST of XM_017397765.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TVL0 (H/ACA ribonucleoprotein complex non-core subunit NAF1 {ECO:0000256|ARBA:ARBA00021438})

HSP 1 Score: 384.415 bits (986), Expect = 4.986e-120
Identity = 280/616 (45.45%), Postives = 355/616 (57.63%), Query Frame = 0
 
Query:   34 GGVGVEDGFREVGSDVGRDGFQE----VVGKSFEVGREDSCRETNGE-----DG----VGKFGSLIEEEMGKVSLDESGGNGVGEGLGDIEKVVMCEMEDGLEGLERSDKLVGVEGSE-LERGEMGNVECGGEKSCEIDGAEGGGIEKPCFNGKLGDSGNTLTIDGVGTKIGGNMSDEDDSESESESETSGSSSSSSSSSSSSSEDDDEDDDDVKEVEEG-----EIDIEEGEIRDSVEDEMTAWSDEDEEFGIAMA-GPIMSANEVKVLPPVPPVDVTLQPCHVTLPVGVVLSIVGTQVIVEGVEKHDPLNEGSILWITEKRSPLGIVDEIFGPVKNPYYIVRYNSENEVPVGIQQGTSVSFVPEFVNHILNNGNLYKKGYDASGENDEEISEEAEFSDDEKEAEYKRLQKMSKRGPKDQTLENRKRNKNKSKRRGGQWGGDQHSSAKEP--------NERVVQAPSIQNQHFRPPLSVNQGNSSNSMRPVQAFAGGPGLVPVFPQAPQVPGFVAPSSGVWMNGIPCQPPQS---TFSNGPTPNNMLQLQQNQAQQPYHMPPFNGMPLQQ-FSTGQMMPPNFVFPGGHPGFSMGAFTPMNQMMFSQNNFGQLQAG 617
            G +G      EVGSD  +D  +E    VV +S ++G +    + N E     DG    +G  G LIEE++GKVSLD +    V         VV  + ++ +EG      +  ++GS+  + GE   V      +   D  + GG+   C               G G K+    SD+D+S+S+ ESE   SSSSSSSSSSS S D+DE+  ++K   E      +ID+EEGEI  S  DE+ AWSD++++ G ++  GPI+S NE+KVLPPVP VDVTLQP H TLPVG++LSI+G QVIVEGVEKH+PLNEGSILWIT+ RSPLGIVDEIFGPVKNPYYIVRYNSE+EVP GIQQGTS+SFVPEF NH+LN+ +LY+KGYDASGENDEE+ +E EFSDDEKEAEYKR+ K  KR  ++     ++++K K K +   W  +Q  + + P        NE    APS          S+NQ N S+S    Q  A        FPQ  Q PGFV P  G+W NG P Q  Q    +  NG  PN ML +QQNQ  Q Y  P   GM  QQ  +T   +P NF   GG   FS G           QN    LQ G
Sbjct:   97 GELGASKESFEVGSDCKKDEGEEELDGVVERSSQMGSDGVAEKINVEGVLDGDGSGRNLGDLGCLIEEQLGKVSLDGASNCLVA--------VVASKKDENVEG-----DVSVMDGSDGWKTGETVKVNTNSMSTSAADCTDAGGVVGLC---------------GNGMKVDKTRSDKDESDSDVESECESSSSSSSSSSSSGSSDEDEEVGEMKAKNEAGTVDKQIDMEEGEIMLSDADEIAAWSDDEDDDGGSVKKGPIISKNELKVLPPVPCVDVTLQPHHQTLPVGIILSIIGPQVIVEGVEKHNPLNEGSILWITDSRSPLGIVDEIFGPVKNPYYIVRYNSESEVPAGIQQGTSISFVPEFANHVLNDKSLYQKGYDASGENDEELFDEVEFSDDEKEAEYKRMLKTKKRATEESKPGTKRKDKRKQKNQNKNWSSNQDPARQTPLGGGNLPVNEGQNVAPSTAT-------SLNQENYSSSSALRQDLAAPQATFLPFPQGAQAPGFVPP-DGIWSNGFPHQQQQQQSVSLVNGLPPNGMLWMQQNQPYQLYQTPLQTGMAFQQHMTTIAGLPLNFNALGGQANFSGGPAIGPWSTSLDQNMLNSLQFG 676
[Close]
BLAST of XM_017397765.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6K9W8 (H/ACA ribonucleoprotein complex non-core subunit NAF1 {ECO:0000256|ARBA:ARBA00021438})

HSP 1 Score: 370.163 bits (949), Expect = 2.747e-115
Identity = 217/429 (50.58%), Postives = 261/429 (60.84%), Query Frame = 0
 
Query:  239 GEIDIEEGEIRDSVEDEMTAWSDEDEEFGIAMAGPIMSANEVKVLPPVPPVDVTLQPCHVTLPVGVVLSIVGTQVIVEGVEKHDPLNEGSILWITEKRSPLGIVDEIFGPVKNPYYIVRYNSENEVPVGIQQGTSVSFVPEFVNHILNNGNLYKKGYDASGENDEEISEEAEFSDDEKEAEYKRLQKMSKRGPK-DQTLENRKRNKNKSKRRGGQWGGDQHSSAKEPNERVVQAPSIQNQHFRPPLSVNQGNSSNSMRPVQAFAGG-----PGLVPVFPQAPQVPGFVAPSSGVWMNGIPCQPPQST-FSNGPTPNNMLQLQQNQAQQPYHMPPFNGMPLQQFSTGQMMPPNFVFPGGHPGFSMG-AFTPMNQMMFSQNNFGQLQAGASQNNFSQLHVAAAQNNFNHSQAAMNMQQQHAINMQGQLPMN 659
            GE+D+EEGEI  S  DEM AW+++DE+ G+   GPI S NEV+ LPPVP V VTLQP H  LPVGVV SIVG QV+VEGVEKH PL +GSILWITE RSPLGIVDEIFGPVKNPYYIVRYNS+NEVP GI  GT +SFVPEF  H+LN+ +LYKKGYDASGENDEE+SE  EFSDDEKEAEYKR+ KM KRG   DQ L N K +K K K +   W  ++ ++A    E   + P  Q+Q F   +S   G+    + P  +F G      P  VP FP   + PG  APS+GVW NGIP Q PQ+  F N  +   M   QQ   QQ + MP  N +P +Q    QM P  F+FPGG P F  G +F P                            A  QN +N  Q +M       + + GQ+P+N
Sbjct:  244 GEVDMEEGEIEASDPDEMVAWNEDDEDTGVK--GPIRSKNEVQALPPVPAVTVTLQPHHQMLPVGVVSSIVGAQVVVEGVEKHTPLYDGSILWITESRSPLGIVDEIFGPVKNPYYIVRYNSDNEVPTGINPGTLISFVPEFSEHVLNDNSLYKKGYDASGENDEEVSEAEEFSDDEKEAEYKRMLKMKKRGATNDQKLGNNK-DKRKLKNKSQNWKHNESAAADAQREN-AKPPVDQSQRF---ISAAAGSLDQGVHPNSSFQGHVQSSRPPSVPPFPYMEKGPGQAAPSTGVWTNGIPYQQPQNMGFPNALSSIGMPWPQQIHQQQMFSMPSPNAVPFEQ----QMNPSTFIFPGGQPNFGAGPSFLPWP--------------------------ALGQNVYNQPQLSMGQMAPSPLILGGQVPVN 635
[Close]
BLAST of XM_017397765.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1Q3D592 (H/ACA ribonucleoprotein complex non-core subunit NAF1 {ECO:0000256|ARBA:ARBA00021438})

HSP 1 Score: 366.696 bits (940), Expect = 8.724e-114
Identity = 208/414 (50.24%), Postives = 252/414 (60.87%), Query Frame = 0
 
Query:  240 EIDIEEGEIRDSVEDEMTAWSDEDEEFGI--------------------------------AMAGPIMSANEVKVLPPVPPVDVTLQPCHVTLPVGVVLSIVGTQVIVEGVEKHDPLNEGSILWITEKRSPLGIVDEIFGPVKNPYYIVRYNSENEVPVGIQQGTSVSFVPEFVNHILNNGNLYKKGYDASGENDEEISEEAEFSDDEKEAEYKRLQKMSKRGPKDQTLENRKRNKNKSKRRGGQWGGDQHSSAKEPNERVVQAPSIQNQHFRPPLSVNQGN---SSNSMRPVQAFAGGPGLVPVFPQAPQVPGFVAPSSGVWMNGIPCQPPQS-TFSNGPTPNNMLQLQQNQAQQPYHMPPFNGMPL-QQFSTGQMMPPNFVFPGGHPGFSMGA----FTPMNQMMFSQNNFG 612
            +++ EEGEI     + M  WSD D+  G                                 A   PI S NE++ LPPVPPVDVTLQP H TLPVG V SI+G ++IVEGVEKH+PLNEGSILWITE R+ LG+VDEIFGPVKNPYY+VRYNSE+EVP GI +GTSVSFVPEF NH+LN+ NL+KKGYDAS ENDEE+S+E EFSDDEKEAEY+R+QKM+KRG  DQ   N K+N+ K K R  +    +HS+ + P     Q PS    H  P  +   GN   SS+++RP   F  G G++P FP   Q  GF+ PS+G+W NG+ CQ PQS  F NG   N +    QN  Q PY MP  N MP  QQF   Q   PN  FPGG   F          P +Q+ F+Q  FG
Sbjct:  224 QVETEEGEISGDGGEGMVGWSDRDDSGGEEAEDSEVMVGGSEVEFDDADLEDEDEDGVGGGATQRPIRSKNEIQDLPPVPPVDVTLQPHHQTLPVGFVSSIIGVKIIVEGVEKHNPLNEGSILWITESRALLGLVDEIFGPVKNPYYVVRYNSESEVPTGIHEGTSVSFVPEFANHVLNDQNLHKKGYDASNENDEELSDEIEFSDDEKEAEYRRMQKMAKRGINDQKPGNMKKNRKKVKERNERQNNARHSAQQTPIRAGQQPPSQTQYHVSPAATSLAGNNCQSSSAIRP--GFVSGAGIIPPFPPMAQPMGFINPSNGIWANGMLCQQPQSAVFPNGYPNNGIPMFPQNLNQHPYQMPMQNLMPFHQQFDPSQRSLPNVGFPGGQSNFFAAPNAPWLGPASQIGFNQATFG 635
[Close]
BLAST of XM_017397765.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5YP87 (H/ACA ribonucleoprotein complex non-core subunit NAF1 {ECO:0000256|ARBA:ARBA00021438})

HSP 1 Score: 363.229 bits (931), Expect = 1.623e-112
Identity = 230/490 (46.94%), Postives = 278/490 (56.73%), Query Frame = 0
 
Query:  269 AMAGPIMSANEVKVLPPVPPVDVTLQPCHVTLPVGVVLSIVGTQVIVEGVEKHDPLNEGSILWITEKRSPLGIVDEIFGPVKNPYYIVRYNSENEVPVGIQQGTSVSFVPEFVNHILNNGNLYKKGYDASGENDEEISEEAEFSDDEKEAEYKRLQKMSKRGPKDQTLENRKRNKNKSKRRGGQWGGDQHSSAKEPNERVVQAPSIQNQHFRPPLSVNQGNSSNSMRPVQAFAGGPGLVPVFPQAPQVPGFVAPSSGVWMNGIPCQPPQ-STFSNGPTPNNMLQLQQNQAQQPYHMP-PFNGMP------LQQFSTGQMMPPNFVFPGGHPGFSMGAFTPMNQMMFSQNNFGQLQAGASQNNFSQLHVAAAQNNFNHSQAAMNMQQQHAINMQGQLPMNFGQSNAAVGMQGQHAPSIVNNGDQGVLPKENQNEQNGSSQPLPATPPSTGGPQNFSSGVKFGRGRNSYQ--RGGGRFGGRGGRGRGRGRQQ 748
            AM GPI S NE++VLP VPP++VTLQP    LPVGVVLS +GT+V+VEG ++H PLNEGSILWIT  RSPLG+VDEIFGPVKNPYY+VRYNSE+E+P GI +GTS+SFVPEF NH+LN+ NL+KKGYDASGENDEE+S++AEFSDDEKEAEYKR+QK +KRG  DQ +ENRK NK K K R G W  D+ SSA++ +  V   P  QNQH    +S    N+ +S    Q F GG G VP F   PQ  GF+ PS+GVW NG+P Q PQ + F N  +   M  L QN  QQP  +P P   MP      LQQF       P+ V PG       G        +  QN       G SQ  F                                           VGMQGQ   S +    QG+L      + N + QP  +   +    QNF+ G    RG+ SY+  RG GRF G      GRG QQ
Sbjct:  265 AMKGPIRSKNELEVLPLVPPLNVTLQPHQQMLPVGVVLSTIGTKVVVEGRDQHSPLNEGSILWITIGRSPLGLVDEIFGPVKNPYYVVRYNSESEIPAGINEGTSISFVPEFANHVLNDKNLHKKGYDASGENDEELSDDAEFSDDEKEAEYKRMQKWTKRGMNDQGVENRKGNKKKVKSRNGAWKNDR-SSAQQTSTAVGHLPPNQNQHNFSTVSAPLDNNCSSSVLEQNFVGGSGFVPPFSIMPQSSGFITPSNGVWTNGVPRQQPQNAIFPNMFSVEGMPLLSQNY-QQPIPLPTPAMRMPTMMPYQLQQFDPCLSTFPSVVLPGSQSNLFAGPACAPWLGIAGQN-------GCSQTTF------------------------------------------GVGMQGQQFLSAL----QGILSNGTTADGNCNLQP-KSIQGNFDTSQNFNIGASSSRGKTSYRRGRGSGRFTG------GRGHQQ 692
[Close]
BLAST of XM_017397765.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4D7Q7 (H/ACA ribonucleoprotein complex non-core subunit NAF1 {ECO:0000256|ARBA:ARBA00021438})

HSP 1 Score: 363.614 bits (932), Expect = 2.184e-112
Identity = 311/695 (44.75%), Postives = 381/695 (54.82%), Query Frame = 0
 
Query:   66 REDSCRETNGEDGVGKFGSL---IEEEMGKVSLDESGGNGVGEGLGDIEKVVMCEMEDGLEGLERSDKLVGVEGSELERGEMGNVECGGEKSCEIDGAEGGGIEKPCFNGKLGDSG----NTLTIDGVGTKIGGNMSDEDDSESESESETSGSSSSSSSSSSSSSEDDDEDDDDVKEVEEGEIDIEE---------GEIRDSVEDEMTAWSDEDEEF--GIAMAGPIMSANEVKVLPPVPPVDVTLQPCHVTLPVGVVLSIVGTQVIVEGVEKHDPLNEGSILWITEKRSPLGIVDEIFGPVKNPYYIVRYNSENEVPVGIQQGTSVSFVPEFVNHILNNGNLYKKGYDASGENDEEISEEAEFSDDEKEAEYKRLQKMSKRGPKDQTL-ENRKRNKNKSKRRGGQWGGDQHSSAKEPNERVVQAPSIQNQHF--RPPLSVNQGNSSNSM-RPVQAFAGGPGLVPVFPQAPQVPGFVAPSSGVWMNG-IPCQPPQS--TFSNGPTPNNMLQLQQNQAQQPYHMPPFNGMPLQ---QFSTGQMMPPNFVFPGGHPGFSMG-AFTPMNQMMFSQNNFGQLQAGASQNNFSQLHVAAAQNNFNHSQAAMNMQQQHAINMQGQLPMNFGQSNAAVGMQGQHAPSIVNNGDQGVLPKENQNEQNGSSQPLPATP--PSTGGPQNFSSGVKFGRGRNSYQR 729
            ++ SC ETN  DG  K G L   IEE++GKVSLD         GL   E  VM            SD+   V G+             G KS EI G +  G++     G + +SG      +TIDG G K     SDE +S+      +  + SSSSS+SSSSS    E++DD  E E    + ++         GEIRDS   E+ AWS+++++   G    GPI S NE++VLPPVPPV+VTLQP H  LPVGV+LSIVGTQVIVEGVEKH+PLNEGSILWITE RSPLG+VDEIFGPVKNPYYI+RYNSENEVP G++QGTS+SFV EF  H+LN+ +LYKKGYDASGENDEE+SEEAEFSDDEKEAEYKR+ KM+KRG  D  +  NRK+++ K K  GG W   + S+ +   E V Q P+ QN+    RP  S++ G+ S S     Q F+  P LVP FPQ  Q PGF+  SSGVW NG +PC+  Q    F NG   N M  +QQNQ QQ Y MP  N MP Q   QF   Q +PPN VFP   P F  G AF P           G L      N  S + +   Q   + +      Q   +IN               VG Q + AP  +N G                 QP P  P       PQ F+ GV  GRG   Y  
Sbjct:   92 KDGSCGETNFGDGFQKLGDLGSSIEEDIGKVSLD---------GLVVAESGVM------------SDQPASVGGN-------------GAKSVEIVGVDENGVKSSETLGIINESGCKSAEIVTIDGDGPK-----SDETESDGHESGSSEDTDSSSSSASSSSSSSSSEEEDDEDEDEGEGTEEQKKEGEIDIEEGEIRDS---EVVAWSEDEDDEEDGSVTKGPIRSKNELEVLPPVPPVNVTLQPHHQILPVGVILSIVGTQVIVEGVEKHNPLNEGSILWITESRSPLGLVDEIFGPVKNPYYIIRYNSENEVPAGVEQGTSISFVREFAQHVLNDSSLYKKGYDASGENDEELSEEAEFSDDEKEAEYKRMLKMTKRGSNDPKVGNNRKKDRKKFKNHGGTWQKSRPSTPQT-QEGVCQPPTNQNKRCAPRPAASLDNGSCSYSFGTGQQGFSSSPSLVPPFPQLVQAPGFIPTSSGVWTNGMMPCEQQQQNMVFHNGVPTNGMPWMQQNQFQQSYQMPLPNRMPFQQQMQFVPSQSLPPNMVFPAAQPNFCAGPAFAPWP---------GSLGQSGGFNQPSGMGLQCQQAPISRNVGEQPRQPSMSIN---------------VGEQQRQAPMSMNVG-----------------QPRPLIPGNIEVSQPQQFNQGVHRGRGSKPYHH 702
[Close]
BLAST of XM_017397765.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7HDK5 (H/ACA ribonucleoprotein complex non-core subunit NAF1 {ECO:0000256|ARBA:ARBA00021438})

HSP 1 Score: 363.614 bits (932), Expect = 2.289e-112
Identity = 224/471 (47.56%), Postives = 272/471 (57.75%), Query Frame = 0
 
Query:  261 DEDEEFGIAMAGPIMSANEVKVLPPVPPVDVTLQPCHVTLPVGVVLSIVGTQVIVEGVEKHDPLNEGSILWITEKRSPLGIVDEIFGPVKNPYYIVRYNSENEVPVGIQQGTSVSFVPEFVNHILNNGNLYKKGYDASGENDEEISEEAEFSDDEKEAEYKRLQKMSKRGPKDQTLENRKRNKNKSKRRGGQWGGDQHSSAKEPNERVVQAPSIQNQHFRPPLSVNQGNSSNSMRPVQAFAGGPGLVPVFPQAPQVPGFVAPSSGVWMNGIP-CQPPQSTFSNGPTPNNMLQLQQNQAQQPYHMPPFNGMP-LQQFSTGQMMPPNFVFPGGHPGFSMG-AFTPMNQMMFSQNNFGQLQAGASQNNFSQLHVAAAQNNFNHSQAAMNMQQQHAINMQGQLPMNFGQSNAAVGMQGQHAPSIVNNGDQGVLPKENQNEQNGSSQPLPATPPSTGGPQNFSSGVKFGRGRNSYQ 728
            D DE+  +A  GPI S NE++VLPPVP V+VTLQP H  LPVGVVLS++G QVIVEGVEKH+PLNEGS+LWITE RS LG++DE+FGPVKNPYY+VRYN ++EVP GI  GTS+SFV EF NH+LN+ NLYKKGYDASG+NDEE+S EAEFSDDEKEAEY+R  KM KRG  DQ   N+K N+ K + R G     +HS  +   + V Q P  Q+QH  P +  ++GN S+S    Q F GG GLVP FP   Q+ GF    +GVW NG+P  QP  + F NG   N M    QN  Q P  MP  N MP LQQF   Q   PN   PG  P    G A+ P   ++              QN  +Q++         H   ++N  Q   +   G L   FG     +G QGQ APS VN G+Q                  P   PS   PQ F+ G     GR  Y 
Sbjct:  274 DGDEDGAVATGGPIKSKNELQVLPPVPEVNVTLQPHHQMLPVGVVLSVLGAQVIVEGVEKHNPLNEGSVLWITESRSLLGLIDEVFGPVKNPYYMVRYNLDSEVPAGIHVGTSISFVQEFANHVLNDKNLYKKGYDASGDNDEEVS-EAEFSDDEKEAEYRRNLKMEKRGMNDQKPGNKKNNRKKIRNRDGALQNGRHSIQQM--DGVGQLPQNQDQHHYPAVPADRGNCSSSSAIGQGFVGGTGLVPQFPPMAQMAGFTGTMNGVWANGMPSLQPQNAVFPNGFPSNGMPWHPQNYQQHPNQMPMMNSMPYLQQFDPSQRSHPNVALPGMQPNLLAGPAYAPWLGLV-------------GQNGLNQMYGMGLPGQPMH--PSINAGQAGFVGQNG-LNQTFG-----MGFQGQPAPSSVNAGEQ------------------PNVQPSE-APQQFNMGASSNWGRKPYH 701
Match NameStatsDescription
A0A5B7BRW9E-Value: 7.053e-149, PID: 44.15H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A5J5A314E-Value: 1.718e-140, PID: 46.88H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A2R6QX12E-Value: 1.571e-128, PID: 50.09H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A2R6QC87E-Value: 1.494e-124, PID: 46.97H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A6I9TVL0E-Value: 4.986e-120, PID: 45.45H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A1J6K9W8E-Value: 2.747e-115, PID: 50.58H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A1Q3D592E-Value: 8.724e-114, PID: 50.24H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A6P5YP87E-Value: 1.623e-112, PID: 46.94H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A4S4D7Q7E-Value: 2.184e-112, PID: 44.75H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A5C7HDK5E-Value: 2.289e-112, PID: 47.56H/ACA ribonucleoprotein complex non-core subunit N... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.