XM_017394294.1

Resource Type: 
Polypeptide
Name: 
XM_017394294.1
Identifier: 
XM_017394294.1-protein
Sequence: 
MLSGALLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVV
GDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKA
AILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVG
GRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLA
HNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVV
FGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDATSSEN
PIKSVIGTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILFSPGP
SVSKPSSEDNPPR
Sequence Length: 
363
Sequence Checksum: 
8fdce8d31206828527c90cd36258b178
View location in JBrowse: 
DCARv2_Chr5:38475761..38480503+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017394294.1, derives from mRNA, XM_017394294.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017394294.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017394294.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AYI9 (Metallophos domain-containing protein {ECO:0000259|Pfam:PF00149})

HSP 1 Score: 483.026 bits (1242), Expect = 1.955e-169
Identity = 243/357 (68.07%), Postives = 281/357 (78.71%), Query Frame = 0
 
Query:    1 MLSGALLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDATSS---ENPIKSVI----GTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILFSPGP 350
            M   ALLHAP   C+  S  PS P S K K      NRF MA+SVRIAVVGDVHD WNLEED KAL+LL+PDLVLFTGD+GNE NV+LV SIADL  AKA ILGNHDAW+T +F+ R+KD VQLQL+CLG EHVGY+RLDFP LKLSIVGGRPFS GG++LFR +LL++RYGV  M  SAKRIY+AA+GTPEDH +I LAHNGPTGLGS +NDICG+DW F GGDHGDPDLA+A+S LKETTK S+PLVVFGHMHK+LA GNGLRKM+V+G DN+IYLNGA+VPRVK L  +    +     N I   I    GT RA TLVEI+ G+LEKI ETW+SV+GDK  L EE+ILF+ GP
Sbjct:    1 MFMSALLHAPTLCCLFGS-CPS-PSSSKLK------NRFLMASSVRIAVVGDVHDDWNLEEDTKALQLLRPDLVLFTGDFGNE-NVELVRSIADLKFAKAIILGNHDAWSTQQFAQRRKDRVQLQLECLGEEHVGYRRLDFPMLKLSIVGGRPFSCGGEQLFRKRLLAERYGVHDMNGSAKRIYEAAIGTPEDHLVILLAHNGPTGLGSNLNDICGKDWVFGGGDHGDPDLANAISHLKETTKFSIPLVVFGHMHKELAHGNGLRKMIVLGTDNTIYLNGAIVPRVKSLGDEQKTNNRSFMNNEIPVTIPEAEGTVRAFTLVEIVDGKLEKIAETWISVIGDKTTLEEENILFTTGP 348
[Close]
BLAST of XM_017394294.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BPR7 (Metallophos domain-containing protein {ECO:0000259|Pfam:PF00149})

HSP 1 Score: 482.256 bits (1240), Expect = 3.428e-169
Identity = 242/357 (67.79%), Postives = 282/357 (78.99%), Query Frame = 0
 
Query:    1 MLSGALLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDAT-----SSENPIKS--VIGTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILFSPGP 350
            M   ALLHAP   C+  S+    P S KRK        FSMA+SVRIAVVGDVHD WNL+ED KAL+LL+PDLVLFTGD+GNE NV+LV+SIADL  AKA ILGNHDAW+T +FS R+KD VQLQL+CLG EHVGY+RLDFP LKLSIVGGRPFS GG++LFR +LL+ RYGV  M  SAKR+Y+AALGTPEDH +IFLAHNGPTGLGS +NDICG+DW F GGDHGDPDLA A+  LKETT+ S+PLVVFGHMHK+LA GNGLRKM+V+G DN+IYLNGA+VPRVK+L  +         ++E P+ +    GT RA TLVEI+ G+LEKI ETWVSV+GDK  L EEHILFS GP
Sbjct:    1 MFISALLHAPTLCCLFGSSPSHSPKSSKRK-------NFSMASSVRIAVVGDVHDDWNLQEDTKALQLLRPDLVLFTGDFGNE-NVELVQSIADLEFAKAVILGNHDAWSTQQFSERRKDRVQLQLECLGEEHVGYRRLDFPMLKLSIVGGRPFSCGGEQLFRKRLLAARYGVHDMNGSAKRVYEAALGTPEDHLVIFLAHNGPTGLGSNLNDICGKDWVFGGGDHGDPDLAHAICHLKETTQFSIPLVVFGHMHKELAYGNGLRKMIVLGADNTIYLNGAIVPRVKRLGDEQGTNNRGFMNNETPVTTPEAEGTVRAFTLVEIVDGKLEKIAETWVSVIGDKTTLEEEHILFSTGP 349
[Close]
BLAST of XM_017394294.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A836Y7K1 ((Calcineurin metallo-phosphoesterase superfamily protein {ECO:0000313|EMBL:KAG5243770.1}))

HSP 1 Score: 465.307 bits (1196), Expect = 1.473e-162
Identity = 230/349 (65.90%), Postives = 274/349 (78.51%), Query Frame = 0
 
Query:    5 ALLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKH--DATSSENPIKSVI-----GTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILF 346
            AL+HAP P  +S ++  +  P              SMA S RIAVVGDVHD WNLEED+KAL+LL+PDLVLFTGD+GNE NV+LV+SIADL + K  ILGNHDAW T  FS ++KD VQ QL+CLG EHV Y+RLDFPTLKLS+VGGRPFS GG+++FR  LLS RYGV+ M+ SA RIY AALGTPEDH +IFLAHNGPTGLGS +NDICG+DW F GGDHGDPDLA A+S++KETTK++ PLVVFGHMHK+LA GNGLRKM+VVG D +IYLNGA+VPRV++LV++   D+T+S N   SVI     GT RA TLVEIL GR++KI ETWVSV  D+ AL EEH+LF
Sbjct:    8 ALIHAPSPCFLSATHRSTSSPDPTTVRSS------SMAASARIAVVGDVHDDWNLEEDSKALQLLQPDLVLFTGDFGNE-NVELVQSIADLNLPKVVILGNHDAWKTQHFSGKRKDGVQRQLECLGEEHVAYKRLDFPTLKLSVVGGRPFSCGGEQIFRRSLLSARYGVQDMDGSADRIYNAALGTPEDHMVIFLAHNGPTGLGSNLNDICGKDWVFGGGDHGDPDLAQAISRVKETTKINTPLVVFGHMHKELAYGNGLRKMIVVGADKTIYLNGAIVPRVRRLVVEQGTDSTNSMNNETSVISPGSRGTLRAFTLVEILEGRVDKIAETWVSVTDDETALEEEHVLF 349
[Close]
BLAST of XM_017394294.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2K2A4G7 (Metallophos domain-containing protein {ECO:0000259|Pfam:PF00149})

HSP 1 Score: 462.225 bits (1188), Expect = 2.161e-161
Identity = 229/352 (65.06%), Postives = 271/352 (76.99%), Query Frame = 0
 
Query:    5 ALLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKH--DATSSENPIKSVI-----GTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILFSPG 349
            AL+HAP P  +S +   +  P              SMA S RIAVVGDVHD WNLEED+KAL+LL+PDLVLFTGD+GNE NV+LV+SIADL + K  ILGNHD+W T  FS ++KD VQ QL+CLG EHV Y+RLDFPTLKLS+VGGRPFS GG+++FR  LLS RYGV+ M+ SA RIY AALGTPEDH +IFLAHNGPTGLGS +NDICG+DW F GGDHGDPDLA A+S LKETTK+S+PLVVFGHMHK+LA GNGLRKM+VVG D +IYLNGA+VPRV++LV +   D T+  N   SV      GT RA TLVEIL GR++KI ETWVSV+ D+ A+ EEH+LF  G
Sbjct:    6 ALIHAPAPCFISTTQRSTSSPDPTTVRSS------SMAASARIAVVGDVHDDWNLEEDSKALQLLQPDLVLFTGDFGNE-NVELVQSIADLNLPKVVILGNHDSWKTQHFSGKRKDGVQRQLECLGEEHVAYKRLDFPTLKLSVVGGRPFSCGGEQIFRRSLLSARYGVQDMDGSADRIYNAALGTPEDHMVIFLAHNGPTGLGSNLNDICGKDWVFGGGDHGDPDLAQAISHLKETTKISIPLVVFGHMHKELAYGNGLRKMIVVGADKTIYLNGAIVPRVRRLVAEQGTDNTNFMNNETSVFSPGSRGTMRAFTLVEILEGRVDKIAETWVSVIEDETAIGEEHVLFQRG 350
[Close]
BLAST of XM_017394294.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8AIG7 ((uncharacterized protein LOC104603343 isoform X1 {ECO:0000313|RefSeq:XP_010265657.1}))

HSP 1 Score: 457.603 bits (1176), Expect = 1.002e-159
Identity = 220/312 (70.51%), Postives = 261/312 (83.65%), Query Frame = 0
 
Query:   35 KKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDATSSENPIKSVIGTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILF 346
            ++NR SM +SVRIAVVGDVHD WNL+ED +AL+ L+PDLVLFTGD+GNE NV+LV SIADL IAKA ILGNHD+WNT +FS + KD VQLQL+CLG EHVGY RLDFP LK+S+VGGRPFS GG+ LFR +LLS RYGV  M+ SAK+IYKAALGTPE  SI+FLAHNGP GLGS++NDICG+DW F GGDHGDPDLA A+S LKETT+ S+PLVVFGHMHK+LA GNGLRKM+VVG DN+IYLNGA+VPRV+  +   + TS+  P+ +  GT RA TLVEIL G+L +I ETWVSV+GDK A+ EEHIL+
Sbjct:   28 QRNRVSMPSSVRIAVVGDVHDDWNLQEDERALQFLQPDLVLFTGDFGNE-NVELVRSIADLKIAKAVILGNHDSWNTQQFSKKGKDHVQLQLECLGEEHVGYSRLDFPMLKMSVVGGRPFSCGGESLFRKRLLSARYGVDDMDGSAKKIYKAALGTPEGLSIVFLAHNGPIGLGSDINDICGKDWVFGGGDHGDPDLARAISLLKETTQFSIPLVVFGHMHKELAYGNGLRKMLVVGADNTIYLNGAIVPRVRSFM--KEETSTYAPVST--GTVRAFTLVEILDGKLVRIAETWVSVIGDKMAIEEEHILY 334
[Close]
BLAST of XM_017394294.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J0ZN03 ((uncharacterized protein LOC110410707 isoform X1 {ECO:0000313|RefSeq:XP_021276238.1}))

HSP 1 Score: 454.907 bits (1169), Expect = 1.961e-158
Identity = 229/355 (64.51%), Postives = 270/355 (76.06%), Query Frame = 0
 
Query:    1 MLSGALLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATS--VRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDATSSENPIKSVI-------GTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILF 346
            MLS AL HAP    + +S  P   P            R  MA S  VRIAVVGDVHD W+LEED KAL+ LKPDLVLFTGD+GNE NV+LV+++A L   KA ILGNHD+WNT +FS ++KD VQLQL+CLG EHVGY+RLDFP LKLSIVGGRPFS GGQ++FR +L+S RYGV+ ME SAKRIY+AALGTPEDH +IFLAHNGPTGLGSE+NDICG+DW F GGDHGDPDLA A+S LKET+  S+ LVVFGHMHK+LADGNGLRKM+VVG DN IYLNGA+VPRVK+ + K  A    +     +       GTKRA TL+EIL G+++KI E WVSV+G++  L EEHILF
Sbjct:    1 MLS-ALTHAPTLRFLCSSPQPKPVPC-----------RSCMADSSLVRIAVVGDVHDDWDLEEDTKALQFLKPDLVLFTGDFGNE-NVELVQNVAALNFPKAVILGNHDSWNTQQFSGKRKDRVQLQLECLGQEHVGYKRLDFPLLKLSIVGGRPFSCGGQQIFRKRLVSARYGVQDMEGSAKRIYEAALGTPEDHLVIFLAHNGPTGLGSELNDICGKDWVFGGGDHGDPDLAQAISHLKETSTFSILLVVFGHMHKELADGNGLRKMIVVGTDNIIYLNGAIVPRVKRPINKQQAAHRSSIDNQTLLNASNSDGTKRAFTLIEILNGQVDKISENWVSVVGNETTLEEEHILF 342
[Close]
BLAST of XM_017394294.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YA14 ((uncharacterized protein LOC104242343 isoform X1 {ECO:0000313|RefSeq:XP_009795680.1}))

HSP 1 Score: 452.595 bits (1163), Expect = 1.096e-157
Identity = 226/348 (64.94%), Postives = 267/348 (76.72%), Query Frame = 0
 
Query:    1 MLSGA-LLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDATSSENPIKSVIGTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILFS 347
            M +G+  LHAP P C    + P L P+      KL    FSM++SVRIAVVGDVHD WNLEED KAL+LL+PDLVLFTGD+GNE NV LV SIADL + KA ILGNHDAWNT  FS R+KD VQLQL+CLG EHVGY+R+D P LKLS+VGGRPFS GG+ LFR +LL  RYGV  M+ SA+RI +AA+GTPEDHSIIFLAHNGPTGLG++++DICGRDW   GGDHGDPDLA AL+QLKE    SVPLV+FGHMHK+LA GNG RKM+VVG+DN+IYLNGA+VPRV+   +  ++           GT RA T+ EI  GR+EKI ETW+SV+GDK  L EEHILF+
Sbjct:    1 MFTGSTWLHAPTPFC--GISGPILHPTPS----KLAGGDFSMSSSVRIAVVGDVHDDWNLEEDRKALQLLQPDLVLFTGDFGNE-NVDLVRSIADLEMTKAVILGNHDAWNTQNFSGREKDAVQLQLECLGDEHVGYRRMDLPMLKLSVVGGRPFSCGGRPLFRKQLLKARYGVHDMDRSAERILQAAMGTPEDHSIIFLAHNGPTGLGAKIDDICGRDWFVGGGDHGDPDLAHALAQLKEAAPYSVPLVIFGHMHKQLALGNGFRKMIVVGNDNTIYLNGAIVPRVRPPALTAESE----------GTSRAFTIAEISNGRVEKIAETWISVIGDKTRLEEEHILFN 331
[Close]
BLAST of XM_017394294.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4BFG0 ((uncharacterized protein LOC107807700 isoform X1 {ECO:0000313|RefSeq:XP_016487622.1}))

HSP 1 Score: 452.595 bits (1163), Expect = 1.096e-157
Identity = 226/348 (64.94%), Postives = 267/348 (76.72%), Query Frame = 0
 
Query:    1 MLSGA-LLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDATSSENPIKSVIGTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILFS 347
            M +G+  LHAP P C    + P L P+      KL    FSM++SVRIAVVGDVHD WNLEED KAL+LL+PDLVLFTGD+GNE NV LV SIADL + KA ILGNHDAWNT  FS R+KD VQLQL+CLG EHVGY+R+D P LKLS+VGGRPFS GG+ LFR +LL  RYGV  M+ SA+RI +AA+GTPEDHSIIFLAHNGPTGLG++++DICGRDW   GGDHGDPDLA AL+QLKE    SVPLV+FGHMHK+LA GNG RKM+VVG+DN+IYLNGA+VPRV+   +  ++           GT RA T+ EI  GR+EKI ETW+SV+GDK  L EEHILF+
Sbjct:    1 MFTGSTWLHAPTPFC--GISGPILHPTPS----KLAGGDFSMSSSVRIAVVGDVHDDWNLEEDRKALQLLQPDLVLFTGDFGNE-NVDLVRSIADLEMTKAVILGNHDAWNTQNFSGREKDAVQLQLECLGDEHVGYRRMDLPMLKLSVVGGRPFSCGGRPLFRKQLLKARYGVHDMDRSAERILQAAMGTPEDHSIIFLAHNGPTGLGAKIDDICGRDWFVGGGDHGDPDLAHALAQLKEAAPYSVPLVIFGHMHKQLALGNGFRKMIVVGNDNTIYLNGAIVPRVRPPALTAESE----------GTSRAFTIAEISNGRVEKIAETWISVIGDKTRLEEEHILFN 331
[Close]
BLAST of XM_017394294.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5VLP5 (Metallophos domain-containing protein {ECO:0000259|Pfam:PF00149})

HSP 1 Score: 452.595 bits (1163), Expect = 1.202e-157
Identity = 229/350 (65.43%), Postives = 272/350 (77.71%), Query Frame = 0
 
Query:    1 MLSGALLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDATSSENPIKSV---IGTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILFS 347
            MLS  L+HAP     S S   SL P  K    +      S  +S RIA+VGDVHD WNLEED KALELL+PDLVLFTGD+G EE+V+LV+S+A+L  AKA ILGNHDAW+T +FS +KKD VQLQL+CLG EHV Y+RLDFP +KLS+VGGRPFS GGQ+LFRPKLLS RYGV+ M+ SAKRI KAALG PEDH +I LAHNGPTGLGS ++D+CG+DW + GGDHGDPDLA ALS LKET K+  PLVVFGHMHK+LADGNGLRKM+VVG DN+IYLNGA+VPRVKKL   +D    + P  S     GT RA T+VEI+ G ++KIVE+WVSV+GD+  L EEH+LF+
Sbjct:    1 MLS-TLVHAPTVCSPSGS---SLNPLSKHIATRASMATASARSSARIAIVGDVHDQWNLEEDTKALELLQPDLVLFTGDFG-EESVELVQSVAELRFAKAVILGNHDAWHTKQFSGKKKDGVQLQLECLGEEHVAYRRLDFPVVKLSVVGGRPFSCGGQQLFRPKLLSARYGVQDMDGSAKRICKAALGAPEDHLVILLAHNGPTGLGSNLDDVCGKDWVYGGGDHGDPDLAQALSLLKETGKICGPLVVFGHMHKQLADGNGLRKMIVVGADNTIYLNGAIVPRVKKL---NDEFVDKEPDLSTPESCGTIRAFTIVEIVDGAVDKIVESWVSVVGDRITLEEEHMLFN 342
[Close]
BLAST of XM_017394294.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5XZ56 (Metallophos domain-containing protein {ECO:0000259|Pfam:PF00149})

HSP 1 Score: 452.21 bits (1162), Expect = 1.988e-157
Identity = 229/350 (65.43%), Postives = 272/350 (77.71%), Query Frame = 0
 
Query:    1 MLSGALLHAPVPTCMSNSNAPSLPPSKKRKVKKLKKNRFSMATSVRIAVVGDVHDYWNLEEDAKALELLKPDLVLFTGDYGNEENVKLVESIADLTIAKAAILGNHDAWNTSRFSSRKKDDVQLQLDCLGMEHVGYQRLDFPTLKLSIVGGRPFSAGGQRLFRPKLLSKRYGVKTMEESAKRIYKAALGTPEDHSIIFLAHNGPTGLGSEVNDICGRDWTFEGGDHGDPDLADALSQLKETTKLSVPLVVFGHMHKKLADGNGLRKMVVVGDDNSIYLNGAVVPRVKKLVIKHDATSSENPIKSV---IGTKRASTLVEILGGRLEKIVETWVSVMGDKAALYEEHILFS 347
            MLS  L+HAP     S S   SL P  K    +      S  +S RIA+VGDVHD WNLEED KALELL+PDLVLFTGD+G EE+V+LV+S+A+L  AKA ILGNHDAW+T +FS +KKD VQLQL+CLG EHV Y+RLDFP +KLS+VGGRPFS GGQ+LFRPKLLS RYGV+ M+ SAKRI KAALG PEDH ++ LAHNGPTGLGS ++DICG+DW + GGDHGDPDLA ALS LKET K+  PLVVFGHMHK+LADGNGLRKM+VVG DN+IYLNGA+VPRVKKL   +D    + P  S     GT RA T+VEI+ G ++KIVE+WVSV+GD+  L EEH+LF+
Sbjct:    1 MLS-TLVHAPTVCSPSGS---SLNPLSKHIATRASMATASARSSARIAIVGDVHDQWNLEEDTKALELLQPDLVLFTGDFG-EESVELVQSVAELRFAKAVILGNHDAWHTKQFSGKKKDGVQLQLECLGEEHVAYRRLDFPVVKLSVVGGRPFSCGGQQLFRPKLLSARYGVQDMDGSAKRICKAALGAPEDHLVLLLAHNGPTGLGSNLDDICGKDWVYGGGDHGDPDLAQALSLLKETGKICGPLVVFGHMHKQLADGNGLRKMIVVGADNTIYLNGAIVPRVKKL---NDEFVDKEPDLSTPESCGTIRAFTIVEIVDGAVDKIVESWVSVVGDRITLEEEHMLFN 342
Match NameStatsDescription
A0A5J5AYI9E-Value: 1.955e-169, PID: 68.07Metallophos domain-containing protein {ECO:0000259... [more]
A0A5B7BPR7E-Value: 3.428e-169, PID: 67.79Metallophos domain-containing protein {ECO:0000259... [more]
A0A836Y7K1E-Value: 1.473e-162, PID: 65.90(Calcineurin metallo-phosphoesterase superfamily p... [more]
A0A2K2A4G7E-Value: 2.161e-161, PID: 65.06Metallophos domain-containing protein {ECO:0000259... [more]
A0A1U8AIG7E-Value: 1.002e-159, PID: 70.51(uncharacterized protein LOC104603343 isoform X1 {... [more]
A0A6J0ZN03E-Value: 1.961e-158, PID: 64.51(uncharacterized protein LOC110410707 isoform X1 {... [more]
A0A1U7YA14E-Value: 1.096e-157, PID: 64.94(uncharacterized protein LOC104242343 isoform X1 {... [more]
A0A1S4BFG0E-Value: 1.096e-157, PID: 64.94(uncharacterized protein LOC107807700 isoform X1 {... [more]
A0A6J5VLP5E-Value: 1.202e-157, PID: 65.43Metallophos domain-containing protein {ECO:0000259... [more]
A0A6J5XZ56E-Value: 1.988e-157, PID: 65.43Metallophos domain-containing protein {ECO:0000259... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.