Resource Type:
Polypeptide
Name:
XM_017396952.1
Identifier:
XM_017396952.1-protein
Sequence:
MKNLGWNPGKVFESGLFNMEKKWVFPLVITSIVCGFFLVTSFNMGQVSSL
HRVNAFLSIFPSRVIANQTKASFAEEKNAPPPVPPSPPIPRFAYLISGSK
GDLEKLWRTLHALYHPLNHYVLHMDLESPPEERLELATRVEKEPIFAKVG
NVMMITKANMVTYRGPTMVANTLHACAILLKRTKNWDWFINLSASDYPLV
TQDDLLSTFLDLERDLNFIETTSNLGWKEGKRAMPLMIDPGLYQNTKSDI
FWVTQHRALPTAFKLFTGSAWMILSHSFVEYLVWGWDNLPRTLLMYYTNF
VSSPESYFHTVICNVPEYAPTVINHDMHYIAWDTPPKQHPHILTLDDLSN
MIGSGAAFARKFQQDDPVLDKIDEELLGRTNGSFTPGGWCSGNPRCSKVG
KAKKLKPGPGAQRLRGLVDRLILSAKSEENKCH
Sequence Length:
433
Sequence Checksum:
75070f593efb22b686b404679063ba6a
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017396952.1, derives from mRNA, XM_017396952.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017396952.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017396952.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B6M2 ((Putative xylosyltransferase 2 {ECO:0000313|EMBL:MPA63888.1}) (2.4.1.- {ECO:0000313|EMBL:MPA63888.1}))
HSP 1 Score: 671.003 bits (1730), Expect = 0.000e+0
Identity = 320/421 (76.01%), Postives = 358/421 (85.04%), Query Frame = 0
Match: A0A5B7B6M2 ((Putative xylosyltransferase 2 {ECO:0000313|EMBL:MPA63888.1}) (2.4.1.- {ECO:0000313|EMBL:MPA63888.1}))
HSP 1 Score: 671.003 bits (1730), Expect = 0.000e+0
Identity = 320/421 (76.01%), Postives = 358/421 (85.04%), Query Frame = 0
Query: 15 GLFNMEKKWVFPLVITSIVCGFFLVTSFNMGQVSSLHRVNAFLSIFPSRVIANQTKASFAEEK--NAPPPVPPSPPIPRFAYLISGSKGDLEKLWRTLHALYHPLNHYVLHMDLESPPEERLELATRVEKEPIFAKVGNVMMITKANMVTYRGPTMVANTLHACAILLKRTKNWDWFINLSASDYPLVTQDDLLSTFLDLERDLNFIETTSNLGWKEGKRAMPLMIDPGLYQNTKSDIFWVTQHRALPTAFKLFTGSAWMILSHSFVEYLVWGWDNLPRTLLMYYTNFVSSPESYFHTVICNVPEYAPTVINHDMHYIAWDTPPKQHPHILTLDDLSNMIGSGAAFARKFQQDDPVLDKIDEELLGRTNGSFTPGGWCSGNPRCSKVGKAKKLKPGPGAQRLRGLVDRLILSAKSEENKCH 433
G+ NMEKKWVFPLVI+S+VC F L TSFN+G VSSLH +NA SIFP RV N+T FAE K A PP PP +PRFAYL+SGS+GDLEKLWRTL LYHPLN YV+H+DLE+P EERLELA+RVEK+PIF+KVGNV MITKAN+VTYRGPTMVANTLHACAILLK+ K+WDWFINLSASDYPLVTQDDLL TF L+R+LNF+E TS LGWKEG+RAMPL++DPGLYQ+TKSDIFWVT R LPTAFKLFTGSAWMILS SFVEY +WGWDNLPR LLMYYTNFVSSPE YF +VICN PE+ T +NHDMHYIAWD PPKQHPH L+L+D S MI SGAAFARKF+QDDPVLDKID+ELLGR NGSFTPGGWCSGNP CSKVG LKPG GA+RLR LV L+LSAK +N+C+
Sbjct: 2 GVLNMEKKWVFPLVISSLVCIFLLATSFNVGLVSSLHTINAIFSIFP-RVSTNETSPLFAEAKVKQATPP-PPGSTVPRFAYLVSGSRGDLEKLWRTLRTLYHPLNQYVIHLDLEAPAEERLELASRVEKDPIFSKVGNVHMITKANIVTYRGPTMVANTLHACAILLKKNKDWDWFINLSASDYPLVTQDDLLYTFSGLDRNLNFVEHTSQLGWKEGQRAMPLIVDPGLYQSTKSDIFWVTPRRTLPTAFKLFTGSAWMILSRSFVEYSIWGWDNLPRILLMYYTNFVSSPEGYFQSVICNAPEFVHTAVNHDMHYIAWDIPPKQHPHTLSLNDTSKMIASGAAFARKFKQDDPVLDKIDKELLGRKNGSFTPGGWCSGNPPCSKVGDPTMLKPGLGARRLRRLVGTLVLSAKFSQNQCN 420
BLAST of XM_017396952.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RTR6 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8125808.1}))
HSP 1 Score: 662.529 bits (1708), Expect = 0.000e+0
Identity = 318/419 (75.89%), Postives = 355/419 (84.73%), Query Frame = 0
Match: A0A5N6RTR6 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8125808.1}))
HSP 1 Score: 662.529 bits (1708), Expect = 0.000e+0
Identity = 318/419 (75.89%), Postives = 355/419 (84.73%), Query Frame = 0
Query: 15 GLFNMEKKWVFPLVITSIVCGFFLVTSFNMGQVSSLHRVNAFLSIFPSRVIANQTKASFAEEK-NAPPPVPPSPPIPRFAYLISGSKGDLEKLWRTLHALYHPLNHYVLHMDLESPPEERLELATRVEKEPIFAKVGNVMMITKANMVTYRGPTMVANTLHACAILLKRTKNWDWFINLSASDYPLVTQDDLLSTFLDLERDLNFIETTSNLGWKEGKRAMPLMIDPGLYQNTKSDIFWVTQHRALPTAFKLFTGSAWMILSHSFVEYLVWGWDNLPRTLLMYYTNFVSSPESYFHTVICNVPEYAPTVINHDMHYIAWDTPPKQHPHILTLDDLSNMIGSGAAFARKFQQDDPVLDKIDEELLGRTNGSFTPGGWCSGNPRCSKVGKAKKLKPGPGAQRLRGLVDRLILSAKSEENKC 432
G NMEKKW+FPLVI+S++C F L T+FNMG V SLH +N+ +IFPSR+ NQT FAE K + PP P P IPRFAYL+SGSKGDLEKLWRTLHALYHP N YV+H+DLESP EERLEL +RVEKEPIFAKVGNV MITKANMVTYRGPTMVANTLHACAILLKR+++WDWFINLSASDYPLVTQDDLL TF L RDLNFIE TS LGWKE KRAMPLMIDPGLY +TKSD+FWV R LPTAFKLFTGSAWM+LS SFVEY +WGWDNLPRTLLMYYTNFVSSPE YF TVICNVPE+A T +NHD+HYI+WD PPKQHPH L++ D MIGS AAFARKF+QDDP LDKID++LLGR NGS TPGGWCSGNP+CSKVG KLKPGPGA+RL+ LV RL L+A+ +N+C
Sbjct: 2 GSLNMEKKWLFPLVISSLICIFLLATTFNMGLVFSLHTINSIFAIFPSRLATNQTNPVFAESKVSQSPPPPAGPQIPRFAYLVSGSKGDLEKLWRTLHALYHPRNQYVVHLDLESPAEERLELTSRVEKEPIFAKVGNVYMITKANMVTYRGPTMVANTLHACAILLKRSEDWDWFINLSASDYPLVTQDDLLYTFSTLNRDLNFIEHTSQLGWKEDKRAMPLMIDPGLYSSTKSDVFWVNPRRNLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFQTVICNVPEFAKTAVNHDLHYISWDNPPKQHPHSLSIIDTDKMIGSSAAFARKFKQDDPALDKIDKDLLGRKNGSITPGGWCSGNPKCSKVGNLNKLKPGPGAKRLQRLVARLALTARFGQNQC 420
BLAST of XM_017396952.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3XRU8 ((beta-glucuronosyltransferase GlcAT14B-like {ECO:0000313|RefSeq:XP_016442600.1}))
HSP 1 Score: 657.136 bits (1694), Expect = 0.000e+0
Identity = 311/418 (74.40%), Postives = 359/418 (85.89%), Query Frame = 0
Match: A0A1S3XRU8 ((beta-glucuronosyltransferase GlcAT14B-like {ECO:0000313|RefSeq:XP_016442600.1}))
HSP 1 Score: 657.136 bits (1694), Expect = 0.000e+0
Identity = 311/418 (74.40%), Postives = 359/418 (85.89%), Query Frame = 0
Query: 17 FNMEKKWVFPLVITSIVCGFFLVTSFNMGQVSSLHRVNAFLSIFPSRVIANQTKASFAEEK-NAPPPVPPSPPIPRFAYLISGSKGDLEKLWRTLHALYHPLNHYVLHMDLESPPEERLELATRVEKEPIFAKVGNVMMITKANMVTYRGPTMVANTLHACAILLKRTKNWDWFINLSASDYPLVTQDDLLSTFLDLERDLNFIETTSNLGWKEGKRAMPLMIDPGLYQNTKSDIFWVTQHRALPTAFKLFTGSAWMILSHSFVEYLVWGWDNLPRTLLMYYTNFVSSPESYFHTVICNVPEYAPTVINHDMHYIAWDTPPKQHPHILTLDDLSNMIGSGAAFARKFQQDDPVLDKIDEELLGRTNGSFTPGGWCSGNPRCSKVGKAKKLKPGPGAQRLRGLVDRLILSAKSEENKCH 433
NMEK+W+FPLVI+S VC F +VTSFNMG ++SLH N+ SIFP+ V NQT FAE K N P P +PP+PRFAYLISGSKGDLEKLWRTL ALYHP N+YV+H+DLESP +ERLELA+RVEK+PIFA+VGNV MI KANMVTYRGPTMVANTLHACAILLK+ +WDWFINLSASDYPLVTQDDL+ TF DL+R+ NFIE TS LGWKEG+RAMPL++DPGLY+ TKSDIFW + RALPT+FKLFTGSAWMILS +FVEY +WGWDNLPRTLLMYYTNFVSSPE YF TV+CN PE+A TVINHDMHYI+WD PP+QHPH L ++D + MIGS AAFARKF+QDDPVLDKIDEELL R+NGSFTPGGWC+G PRCSKVG KLKPGPGA+RLR L+ +L+LSAK +++C+
Sbjct: 4 LNMEKRWIFPLVISSFVCFFLVVTSFNMGLITSLHTFNSIFSIFPTHVKINQTNPYFAESKINQAPAPPAAPPVPRFAYLISGSKGDLEKLWRTLQALYHPRNYYVVHLDLESPTQERLELASRVEKDPIFAQVGNVHMIAKANMVTYRGPTMVANTLHACAILLKKYTDWDWFINLSASDYPLVTQDDLIYTFSDLKREFNFIEHTSRLGWKEGQRAMPLIVDPGLYKTTKSDIFWASPKRALPTSFKLFTGSAWMILSRAFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFQTVVCNAPEFATTVINHDMHYISWDYPPRQHPHTLNINDTAKMIGSDAAFARKFKQDDPVLDKIDEELLHRSNGSFTPGGWCTGKPRCSKVGNLTKLKPGPGAKRLRRLIGKLVLSAKFSQHQCN 421
BLAST of XM_017396952.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2MBE1 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL08p021949:mrna}))
HSP 1 Score: 656.751 bits (1693), Expect = 0.000e+0
Identity = 313/419 (74.70%), Postives = 353/419 (84.25%), Query Frame = 0
Match: A0A7N2MBE1 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL08p021949:mrna}))
HSP 1 Score: 656.751 bits (1693), Expect = 0.000e+0
Identity = 313/419 (74.70%), Postives = 353/419 (84.25%), Query Frame = 0
Query: 15 GLFNMEKKWVFPLVITSIVCGFFLVTSFNMGQVSSLHRVNAFLSIFPSRVIANQTKASFAEEK-NAPPPVPPSPPIPRFAYLISGSKGDLEKLWRTLHALYHPLNHYVLHMDLESPPEERLELATRVEKEPIFAKVGNVMMITKANMVTYRGPTMVANTLHACAILLKRTKNWDWFINLSASDYPLVTQDDLLSTFLDLERDLNFIETTSNLGWKEGKRAMPLMIDPGLYQNTKSDIFWVTQHRALPTAFKLFTGSAWMILSHSFVEYLVWGWDNLPRTLLMYYTNFVSSPESYFHTVICNVPEYAPTVINHDMHYIAWDTPPKQHPHILTLDDLSNMIGSGAAFARKFQQDDPVLDKIDEELLGRTNGSFTPGGWCSGNPRCSKVGKAKKLKPGPGAQRLRGLVDRLILSAKSEENKC 432
G NMEKKW+FPLVI+S++C F L T+FNMG V SLH +N+ +SIFPSR+ NQ+ + FAE K PP P P IPRFAYLISGSKGDL+KLWRTLHALYHP N YV+H+DLES EERLELA+RVEKEPIF +VGNV MITKANMVTYRGPTMVA+TLHACAILLKR K+WDWFINLSASDYPLVTQDDLL TF +L+R+LNFIE TS LGWKE KRAMPLM+DPGLY+ TKSDIFWV R LPTAFKLFTGSAWM+LS SFVEY +WGWDNLPRTLLMYYTNFVSSPE YF TV+CNVPE+A T +NHD+HYI+WD PP+QHPH LTL+D S MI S AAF RKF+ DDPVLD+ID++LL R NGSFTPG WCSGNP+CSKVG KLKPG GAQRL LV RL L+AK +N+C
Sbjct: 2 GSLNMEKKWIFPLVISSLICIFLLATTFNMGLVFSLHTINSIISIFPSRIATNQSSSVFAESKVTQSPPPPAGPTIPRFAYLISGSKGDLDKLWRTLHALYHPRNQYVVHLDLESQAEERLELASRVEKEPIFIEVGNVYMITKANMVTYRGPTMVAHTLHACAILLKRNKDWDWFINLSASDYPLVTQDDLLYTFSNLDRNLNFIEHTSQLGWKEDKRAMPLMVDPGLYKTTKSDIFWVNPRRTLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFQTVVCNVPEFAKTAVNHDLHYISWDNPPRQHPHTLTLNDTSKMIASSAAFGRKFKTDDPVLDRIDKDLLKRKNGSFTPGAWCSGNPKCSKVGNVNKLKPGKGAQRLHRLVTRLTLAAKLGKNQC 420
BLAST of XM_017396952.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4CAN2 ((beta-glucuronosyltransferase GlcAT14B-like {ECO:0000313|RefSeq:XP_016498194.1, ECO:0000313|RefSeq:XP_016498195.1}))
HSP 1 Score: 656.366 bits (1692), Expect = 0.000e+0
Identity = 310/418 (74.16%), Postives = 360/418 (86.12%), Query Frame = 0
Match: A0A1S4CAN2 ((beta-glucuronosyltransferase GlcAT14B-like {ECO:0000313|RefSeq:XP_016498194.1, ECO:0000313|RefSeq:XP_016498195.1}))
HSP 1 Score: 656.366 bits (1692), Expect = 0.000e+0
Identity = 310/418 (74.16%), Postives = 360/418 (86.12%), Query Frame = 0
Query: 17 FNMEKKWVFPLVITSIVCGFFLVTSFNMGQVSSLHRVNAFLSIFPSRVIANQTKASFAEEK-NAPPPVPPSPPIPRFAYLISGSKGDLEKLWRTLHALYHPLNHYVLHMDLESPPEERLELATRVEKEPIFAKVGNVMMITKANMVTYRGPTMVANTLHACAILLKRTKNWDWFINLSASDYPLVTQDDLLSTFLDLERDLNFIETTSNLGWKEGKRAMPLMIDPGLYQNTKSDIFWVTQHRALPTAFKLFTGSAWMILSHSFVEYLVWGWDNLPRTLLMYYTNFVSSPESYFHTVICNVPEYAPTVINHDMHYIAWDTPPKQHPHILTLDDLSNMIGSGAAFARKFQQDDPVLDKIDEELLGRTNGSFTPGGWCSGNPRCSKVGKAKKLKPGPGAQRLRGLVDRLILSAKSEENKCH 433
NMEK+W+FPLVI+S VC F +VTSFNMG ++SLH N+ SIFP+ V NQT FAE K N P P +PP+PRFAYLISGSKGDLEKLWRTL ALYHP N+YV+H+DLESPP+ERLELA+RVEK+PIFA+VGNV MI KANMVTYRGPTMVANTLHACAILLK+ +WDWFINLSASDYPLVTQDDL+ TF DL+R+ NFIE TS LGWKEG+RAMPL++DPGLY+ TKSDI+W + RALPT+FKLFTGSAWMILS +FVEY +WGWDNLPRTLLMYYTNFVSSPE YF TV+CN PE+A TVINHDMHYI+WD PP+QHPH L ++D + MIGS AAFARKF+QDDPVLDKID+ELL R+NGSFTPGGWCSG PRCSKVG KLKPGPGA+RLR L+ +L+L+AK +++C+
Sbjct: 4 LNMEKRWIFPLVISSFVCFFLVVTSFNMGLITSLHTFNSIFSIFPTHVKINQTNPYFAESKINQAPAPPAAPPVPRFAYLISGSKGDLEKLWRTLQALYHPRNYYVVHLDLESPPQERLELASRVEKDPIFAQVGNVHMIAKANMVTYRGPTMVANTLHACAILLKKYTDWDWFINLSASDYPLVTQDDLIYTFSDLKREFNFIEHTSRLGWKEGQRAMPLIVDPGLYKTTKSDIYWASPKRALPTSFKLFTGSAWMILSRAFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFQTVVCNAPEFATTVINHDMHYISWDYPPRQHPHTLNINDTAKMIGSDAAFARKFKQDDPVLDKIDKELLHRSNGSFTPGGWCSGKPRCSKVGNLTKLKPGPGAKRLRRLIGKLVLTAKFSQHQCN 421
BLAST of XM_017396952.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7XDR0 ((xylosyltransferase 2-like {ECO:0000313|RefSeq:XP_009784590.1, ECO:0000313|RefSeq:XP_009784591.1}))
HSP 1 Score: 656.366 bits (1692), Expect = 0.000e+0
Identity = 310/418 (74.16%), Postives = 360/418 (86.12%), Query Frame = 0
Match: A0A1U7XDR0 ((xylosyltransferase 2-like {ECO:0000313|RefSeq:XP_009784590.1, ECO:0000313|RefSeq:XP_009784591.1}))
HSP 1 Score: 656.366 bits (1692), Expect = 0.000e+0
Identity = 310/418 (74.16%), Postives = 360/418 (86.12%), Query Frame = 0
Query: 17 FNMEKKWVFPLVITSIVCGFFLVTSFNMGQVSSLHRVNAFLSIFPSRVIANQTKASFAEEK-NAPPPVPPSPPIPRFAYLISGSKGDLEKLWRTLHALYHPLNHYVLHMDLESPPEERLELATRVEKEPIFAKVGNVMMITKANMVTYRGPTMVANTLHACAILLKRTKNWDWFINLSASDYPLVTQDDLLSTFLDLERDLNFIETTSNLGWKEGKRAMPLMIDPGLYQNTKSDIFWVTQHRALPTAFKLFTGSAWMILSHSFVEYLVWGWDNLPRTLLMYYTNFVSSPESYFHTVICNVPEYAPTVINHDMHYIAWDTPPKQHPHILTLDDLSNMIGSGAAFARKFQQDDPVLDKIDEELLGRTNGSFTPGGWCSGNPRCSKVGKAKKLKPGPGAQRLRGLVDRLILSAKSEENKCH 433
NMEK+W+FPLVI+S VC F +VTSFNMG ++SLH N+ SIFP+ V NQT FAE K N P P +PP+PRFAYLISGSKGDLEKLWRTL ALYHP N+YV+H+DLESPP+ERLELA+RVEK+PIFA+VGNV MI KANMVTYRGPTMVANTLHACAILLK+ +WDWFINLSASDYPLVTQDDL+ TF DL+R+ NFIE TS LGWKEG+RAMPL++DPGLY+ TKSDI+W + RALPT+FKLFTGSAWMILS +FVEY +WGWDNLPRTLLMYYTNFVSSPE YF TV+CN PE+A TVINHDMHYI+WD PP+QHPH L ++D + MIGS AAFARKF+QDDPVLDKID+ELL R+NGSFTPGGWCSG PRCSKVG KLKPGPGA+RLR L+ +L+L+AK +++C+
Sbjct: 4 LNMEKRWIFPLVISSFVCFFLVVTSFNMGLITSLHTFNSIFSIFPTHVKINQTNPYFAESKINQAPAPPAAPPVPRFAYLISGSKGDLEKLWRTLQALYHPRNYYVVHLDLESPPQERLELASRVEKDPIFAQVGNVHMIAKANMVTYRGPTMVANTLHACAILLKKYTDWDWFINLSASDYPLVTQDDLIYTFSDLKREFNFIEHTSRLGWKEGQRAMPLIVDPGLYKTTKSDIYWASPKRALPTSFKLFTGSAWMILSRAFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFQTVVCNAPEFATTVINHDMHYISWDYPPRQHPHTLNINDTAKMIGSDAAFARKFKQDDPVLDKIDKELLHRSNGSFTPGGWCSGKPRCSKVGNLTKLKPGPGAKRLRRLIGKLVLTAKFSQHQCN 421
BLAST of XM_017396952.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6S888 ((beta-glucuronosyltransferase GlcAT14B-like {ECO:0000313|RefSeq:XP_027062081.1}))
HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 314/419 (74.94%), Postives = 351/419 (83.77%), Query Frame = 0
Match: A0A6P6S888 ((beta-glucuronosyltransferase GlcAT14B-like {ECO:0000313|RefSeq:XP_027062081.1}))
HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 314/419 (74.94%), Postives = 351/419 (83.77%), Query Frame = 0
Query: 15 GLFNMEKKWVFPLVITSIVCGFFLVTSFNMGQVSSLHRVNAFLSIFPSRVIANQTKASFAEEK-NAPPPVPPSPPIPRFAYLISGSKGDLEKLWRTLHALYHPLNHYVLHMDLESPPEERLELATRVEKEPIFAKVGNVMMITKANMVTYRGPTMVANTLHACAILLKRTKNWDWFINLSASDYPLVTQDDLLSTFLDLERDLNFIETTSNLGWKEGKRAMPLMIDPGLYQNTKSDIFWVTQHRALPTAFKLFTGSAWMILSHSFVEYLVWGWDNLPRTLLMYYTNFVSSPESYFHTVICNVPEYAPTVINHDMHYIAWDTPPKQHPHILTLDDLSNMIGSGAAFARKFQQDDPVLDKIDEELLGRTNGSFTPGGWCSGNPRCSKVGKAKKLKPGPGAQRLRGLVDRLILSAKSEENKC 432
G NMEK+WVFPL I+S+VC F + TSFNMG VSSL +N+ S+FPSR ANQT F E K N PP P +PP+PRFAYL+SGS+GDLEKLWRTLHALYHP N+YV+H+DLESP EERLELA+RVEK PIF+KVGNV MI KANMVTYRGPTMV+NTLHACAILLKR K+WDWFINLSASDYPLVTQDDLL TF L RDLNFIE TS LGWKE RAMPL++DPGLYQ+TKSDIFWV R LPT+FKLFTGSAWMILS +FVEY VWGWDNLPRTLLMYYTNFVSSPE YF TV+CN PE+ PT++NHDMHYIAWD PPKQHP L L+D + MI SGA FARKF+ +DPVLDK+D E LGR NGSFTPGGWC G PRCSKVG KLKPGPGA+RLRGLVD ++LS + EN+C
Sbjct: 2 GSLNMEKRWVFPLAISSLVCLFLIATSFNMGMVSSLQSINSIFSMFPSRATANQTSQLFVEAKVNQSPPPPAAPPVPRFAYLVSGSRGDLEKLWRTLHALYHPRNYYVVHLDLESPAEERLELASRVEKNPIFSKVGNVFMIKKANMVTYRGPTMVSNTLHACAILLKRHKDWDWFINLSASDYPLVTQDDLLHTFTGLRRDLNFIEHTSRLGWKENHRAMPLVVDPGLYQDTKSDIFWVQPKRTLPTSFKLFTGSAWMILSRAFVEYCVWGWDNLPRTLLMYYTNFVSSPEGYFQTVVCNAPEFVPTIVNHDMHYIAWDNPPKQHPKTLHLNDTAPMIASGAPFARKFRANDPVLDKLDNEFLGRKNGSFTPGGWCRGKPRCSKVGNPAKLKPGPGAERLRGLVDNIVLSPRFSENQC 420
BLAST of XM_017396952.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067FH22 ((Uncharacterized protein {ECO:0000313|EMBL:KDO62506.1}))
HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 313/415 (75.42%), Postives = 348/415 (83.86%), Query Frame = 0
Match: A0A067FH22 ((Uncharacterized protein {ECO:0000313|EMBL:KDO62506.1}))
HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 313/415 (75.42%), Postives = 348/415 (83.86%), Query Frame = 0
Query: 19 MEKKWVFPLVITSIVCGFFLVTSFNMGQVSSLHRVNAFLSIFPSRVIANQTKASFAEEK-NAPPPVPPSPPIPRFAYLISGSKGDLEKLWRTLHALYHPLNHYVLHMDLESPPEERLELATRVEKEPIFAKVGNVMMITKANMVTYRGPTMVANTLHACAILLKRTKNWDWFINLSASDYPLVTQDDLLSTFLDLERDLNFIETTSNLGWKEGKRAMPLMIDPGLYQNTKSDIFWVTQHRALPTAFKLFTGSAWMILSHSFVEYLVWGWDNLPRTLLMYYTNFVSSPESYFHTVICNVPEYAPTVINHDMHYIAWDTPPKQHPHILTLDDLSNMIGSGAAFARKFQQDDPVLDKIDEELLGRTNGSFTPGGWCSGNPRCSKVGKAKKLKPGPGAQRLRGLVDRLILSAKSEENKC 432
MEKKWVFPLVI+S++C F L TSFNMG +SSLH +NA SIFPS +N T ++AE K P P P IPRFAYL+SGSKGDLEKLWRTL ALYHP N YVLH+DLE+P EERLELA+RVEK+P+F+KVGNV M TKANMVTYRGPTMVANTLHACAILLK +K+WDWFINLSASDYPLVTQDDLL TF L R LNFIE TS+LGWKE KRAMPLM+DPGLY TKSDIFWVT R LPTAFKLFTGSAWM+LS SFVEY +WGWDNLPRTLLMYYTNFVSSPESYF TVICNVPE+ PTV+NHD+HYI+WD PP QHPHIL+L+D S MI S AAFARKF+Q+ VLDKID+ELLGR NGSFTPG WCSG+P CSKVG K+KPGPGA+RLR LV RL + AK N+C
Sbjct: 1 MEKKWVFPLVISSLICVFLLATSFNMGLISSLHTINAIFSIFPS---SNHTAPNYAEMKVKQSEPAPSGPKIPRFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAMPLMVDPGLYMLTKSDIFWVTPRRTLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVPEFVPTVVNHDLHYISWDNPPGQHPHILSLNDTSEMISSSAAFARKFRQNALVLDKIDKELLGRKNGSFTPGAWCSGDPHCSKVGDPNKIKPGPGAERLRRLVARLTMEAKRGLNQC 412
BLAST of XM_017396952.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4URG0 ((Uncharacterized protein {ECO:0000313|EMBL:ESR65076.1}))
HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 313/415 (75.42%), Postives = 348/415 (83.86%), Query Frame = 0
Match: V4URG0 ((Uncharacterized protein {ECO:0000313|EMBL:ESR65076.1}))
HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 313/415 (75.42%), Postives = 348/415 (83.86%), Query Frame = 0
Query: 19 MEKKWVFPLVITSIVCGFFLVTSFNMGQVSSLHRVNAFLSIFPSRVIANQTKASFAEEK-NAPPPVPPSPPIPRFAYLISGSKGDLEKLWRTLHALYHPLNHYVLHMDLESPPEERLELATRVEKEPIFAKVGNVMMITKANMVTYRGPTMVANTLHACAILLKRTKNWDWFINLSASDYPLVTQDDLLSTFLDLERDLNFIETTSNLGWKEGKRAMPLMIDPGLYQNTKSDIFWVTQHRALPTAFKLFTGSAWMILSHSFVEYLVWGWDNLPRTLLMYYTNFVSSPESYFHTVICNVPEYAPTVINHDMHYIAWDTPPKQHPHILTLDDLSNMIGSGAAFARKFQQDDPVLDKIDEELLGRTNGSFTPGGWCSGNPRCSKVGKAKKLKPGPGAQRLRGLVDRLILSAKSEENKC 432
MEKKWVFPLVI+S++C F L TSFNMG +SSLH +NA SIFPS +N T ++AE K P P P IPRFAYL+SGSKGDLEKLWRTL ALYHP N YVLH+DLE+P EERLELA+RVEK+P+F+KVGNV M TKANMVTYRGPTMVANTLHACAILLK +K+WDWFINLSASDYPLVTQDDLL TF L R LNFIE TS+LGWKE KRAMPLM+DPGLY TKSDIFWVT R LPTAFKLFTGSAWM+LS SFVEY +WGWDNLPRTLLMYYTNFVSSPESYF TVICNVPE+ PTV+NHD+HYI+WD PP QHPHIL+L+D S MI S AAFARKF+Q+ VLDKID+ELLGR NGSFTPG WCSG+P CSKVG K+KPGPGA+RLR LV RL + AK N+C
Sbjct: 1 MEKKWVFPLVISSLICVFLLATSFNMGLISSLHTINAIFSIFPS---SNHTAPNYAEMKVKQSEPAPSGPKIPRFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAMPLMVDPGLYMLTKSDIFWVTPRRTLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVPEFVPTVVNHDLHYISWDNPPGQHPHILSLNDTSEMISSSAAFARKFRQNALVLDKIDKELLGRKNGSFTPGAWCSGDPHCSKVGDPNKIKPGPGAERLRRLVARLTMEAKRGLNQC 412
BLAST of XM_017396952.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2H5P631 ((Uncharacterized protein {ECO:0000313|EMBL:GAY47836.1}))
HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 313/415 (75.42%), Postives = 348/415 (83.86%), Query Frame = 0
Match: A0A2H5P631 ((Uncharacterized protein {ECO:0000313|EMBL:GAY47836.1}))
HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 313/415 (75.42%), Postives = 348/415 (83.86%), Query Frame = 0
Query: 19 MEKKWVFPLVITSIVCGFFLVTSFNMGQVSSLHRVNAFLSIFPSRVIANQTKASFAEEK-NAPPPVPPSPPIPRFAYLISGSKGDLEKLWRTLHALYHPLNHYVLHMDLESPPEERLELATRVEKEPIFAKVGNVMMITKANMVTYRGPTMVANTLHACAILLKRTKNWDWFINLSASDYPLVTQDDLLSTFLDLERDLNFIETTSNLGWKEGKRAMPLMIDPGLYQNTKSDIFWVTQHRALPTAFKLFTGSAWMILSHSFVEYLVWGWDNLPRTLLMYYTNFVSSPESYFHTVICNVPEYAPTVINHDMHYIAWDTPPKQHPHILTLDDLSNMIGSGAAFARKFQQDDPVLDKIDEELLGRTNGSFTPGGWCSGNPRCSKVGKAKKLKPGPGAQRLRGLVDRLILSAKSEENKC 432
MEKKWVFPLVI+S++C F L TSFNMG +SSLH +NA SIFPS +N T ++AE K P P P IPRFAYL+SGSKGDLEKLWRTL ALYHP N YVLH+DLE+P EERLELA+RVEK+P+F+KVGNV M TKANMVTYRGPTMVANTLHACAILLK +K+WDWFINLSASDYPLVTQDDLL TF L R LNFIE TS+LGWKE KRAMPLM+DPGLY TKSDIFWVT R LPTAFKLFTGSAWM+LS SFVEY +WGWDNLPRTLLMYYTNFVSSPESYF TVICNVPE+ PTV+NHD+HYI+WD PP QHPHIL+L+D S MI S AAFARKF+Q+ VLDKID+ELLGR NGSFTPG WCSG+P CSKVG K+KPGPGA+RLR LV RL + AK N+C
Sbjct: 1 MEKKWVFPLVISSLICVFLLATSFNMGLISSLHTINAIFSIFPS---SNHTAPNYAEMKVKQSEPAPSGPKIPRFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAMPLMVDPGLYMLTKSDIFWVTPRRTLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVPEFVPTVVNHDLHYISWDNPPGQHPHILSLNDTSEMISSSAAFARKFRQNALVLDKIDKELLGRKNGSFTPGAWCSGDPHCSKVGDPNKIKPGPGAERLRRLVARLTMEAKRGLNQC 412
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7B6M2 | E-Value: 0.000e+0, PID: 76.01 | (Putative xylosyltransferase 2 {ECO:0000313|EMBL:M... [more] |
| A0A5N6RTR6 | E-Value: 0.000e+0, PID: 75.89 | (Uncharacterized protein {ECO:0000313|EMBL:KAE8125... [more] |
| A0A1S3XRU8 | E-Value: 0.000e+0, PID: 74.40 | (beta-glucuronosyltransferase GlcAT14B-like {ECO:0... [more] |
| A0A7N2MBE1 | E-Value: 0.000e+0, PID: 74.70 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A1S4CAN2 | E-Value: 0.000e+0, PID: 74.16 | (beta-glucuronosyltransferase GlcAT14B-like {ECO:0... [more] |
| A0A1U7XDR0 | E-Value: 0.000e+0, PID: 74.16 | (xylosyltransferase 2-like {ECO:0000313|RefSeq:XP_... [more] |
| A0A6P6S888 | E-Value: 0.000e+0, PID: 74.94 | (beta-glucuronosyltransferase GlcAT14B-like {ECO:0... [more] |
| A0A067FH22 | E-Value: 0.000e+0, PID: 75.42 | (Uncharacterized protein {ECO:0000313|EMBL:KDO6250... [more] |
| V4URG0 | E-Value: 0.000e+0, PID: 75.42 | (Uncharacterized protein {ECO:0000313|EMBL:ESR6507... [more] |
| A0A2H5P631 | E-Value: 0.000e+0, PID: 75.42 | (Uncharacterized protein {ECO:0000313|EMBL:GAY4783... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |