Resource Type:
Polypeptide
Name:
XM_017397803.1
Identifier:
XM_017397803.1-protein
Sequence:
MADKQSLTLAFSLILLLSLSSARLLPNTTAVDLISDGSTQSQPLLRLYAT
SEAKECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEI
LGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGST
VMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTGSGVTADIWTSYAA
MIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQ
PWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPNREVIEKLFMA
IDTDHDNFLSASELRALILGIRFDEINLNEDDASAKLLKDFDSTLDEKID
LDEFICGIKNWLDEAMGLRDSSPQDTAGGETIKHLTRYHEQTKREHFLLG
DQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATS
IPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNN
ILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSS
IAFLLYPFSLALVYVLDYMFGWS
Sequence Length:
573
Sequence Checksum:
7f4c0765a0b9e609f14db53251d987ce
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017397803.1, derives from mRNA, XM_017397803.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017397803.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017397803.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6XJS6 ((sodium/calcium exchanger NCL-like {ECO:0000313|RefSeq:XP_027127454.1}))
HSP 1 Score: 857.44 bits (2214), Expect = 0.000e+0
Identity = 431/583 (73.93%), Postives = 497/583 (85.25%), Query Frame = 0
Match: A0A6P6XJS6 ((sodium/calcium exchanger NCL-like {ECO:0000313|RefSeq:XP_027127454.1}))
HSP 1 Score: 857.44 bits (2214), Expect = 0.000e+0
Identity = 431/583 (73.93%), Postives = 497/583 (85.25%), Query Frame = 0
Query: 1 MADKQ----SLTLAFSLILLLSLSSARLLPNTTAVDLISDG--STQSQ----PLLRLYATSEAKECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPNREVIEKLFMAIDTDHDNFLSASELRALILGIRFDEINLNEDDASAKLLKDFDSTLDEKIDLDEFICGIKNWLDEAMGLRDSSPQDTAGGETIKHLTRYHEQTKREHFLLGDQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 573
MA K SLTL F ++L ++ R + + + DL+SDG S Q Q P++R+++ +E + CE+TYGF+PCTTT+LGNLFLI+ YGYLMFLAAT+LS+GSELLLEILGPG++GGLFLP+LGALPDAMLILVSG+SG+ ETAQ QVSVG+GLLAGSTVMLLTVIWG CV VGKCDIE+ VA D +DT+G SLTGSGV+ DIWT YAA+IMAVS+LPFLVVQLPQ+L+S SGRHLAVLIAL++SV+LLISYCLYQVFQPWIQRRR+ +AKHK VISG+LKHLKMRALGRL N+ G N EV+EKLF ID + D LS+SELRAL++GIRF+EINL+E+DA K++KDFD++ D I DEF GI WLDEA G R S AG T+K+L +HEQTKREH+ LG+QSDE+VEGV+NP+WTTIKAVLLLLLG VIAA FADPLVDAVDNFSSATSIPSFFISFIALP ATNSSEAVSAIIFA+RKKLRSASLTFSELYGAVTMNN+LCLSVFLALVY RGL WDFSSEVLVILIVCIVMG GS+RTTFPLWTS IAFLLYPFSLALVYVLDY+FGWS
Sbjct: 1 MARKHKPSISLTL-FICLILCGIACGRFIGDDGS-DLVSDGVHSQQEQQRLSPVIRMFSAAE-ETCEQTYGFMPCTTTILGNLFLIVVYGYLMFLAATFLSSGSELLLEILGPGLIGGLFLPILGALPDAMLILVSGLSGSAETAQSQVSVGIGLLAGSTVMLLTVIWGACVTVGKCDIENHVAKDLQDTKGFSLTGSGVSTDIWTCYAAIIMAVSVLPFLVVQLPQMLNSNSGRHLAVLIALIVSVALLISYCLYQVFQPWIQRRRLAFAKHKRVISGILKHLKMRALGRLCNDDGTINMEVLEKLFNTIDENKDGCLSSSELRALVIGIRFEEINLDENDAVEKVMKDFDTSRDSLISFDEFSYGISRWLDEAKGSRASQ----AGPGTMKYLEDFHEQTKREHYFLGEQSDEIVEGVDNPRWTTIKAVLLLLLGTVIAAVFADPLVDAVDNFSSATSIPSFFISFIALPLATNSSEAVSAIIFATRKKLRSASLTFSELYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVILIVCIVMGIFGSLRTTFPLWTSLIAFLLYPFSLALVYVLDYVFGWS 576
BLAST of XM_017397803.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SCN2 ((sodium/calcium exchanger NCL-like {ECO:0000313|RefSeq:XP_027063895.1}))
HSP 1 Score: 853.973 bits (2205), Expect = 0.000e+0
Identity = 430/583 (73.76%), Postives = 494/583 (84.73%), Query Frame = 0
Match: A0A6P6SCN2 ((sodium/calcium exchanger NCL-like {ECO:0000313|RefSeq:XP_027063895.1}))
HSP 1 Score: 853.973 bits (2205), Expect = 0.000e+0
Identity = 430/583 (73.76%), Postives = 494/583 (84.73%), Query Frame = 0
Query: 1 MADKQ----SLTLAFSLILLLSLSSARLLPNTTAVDLISDG--STQSQ----PLLRLYATSEAKECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPNREVIEKLFMAIDTDHDNFLSASELRALILGIRFDEINLNEDDASAKLLKDFDSTLDEKIDLDEFICGIKNWLDEAMGLRDSSPQDTAGGETIKHLTRYHEQTKREHFLLGDQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 573
MA K SLTL F ++L ++ R + + + DL+ DG S Q Q P++R+++ +E + CE+TYGF+PCTTTVLGNLFLI+ YGYLMFLAAT+LS+GSELLLEILGPG++GGLFLP+LGALPDAMLILVSG+SG+ ETAQ QVSVG+GLLAGSTVMLLTVIWG CV VGKCDIE+ VA D +DT+G SLTGSGV+ DIWT YAA+IMAVS+LPFLVVQLPQ+L S SGRHLAVLIAL++SV+LLISYCLYQVFQPWIQRRR+ + KHK VISG+L HLKMRALGRL N+ G N EV+EKLF ID D D +LS+SELRAL++GIRF+EINL+E+DA K++KDFD++ D I DEF GI WLDEA G R S AG T+K+L +HEQTKREH+ LG+QSDE+VEGV+NP+WTTIKAVLLLLLG VIAA FADPLVDAVDNFSSATSIPSFFISFIALP ATNSSEAVSAIIFA+RKKLRSASLTFSELYGAVTMNN+LCLSVFLALVY RGL WDFSSEVLVILIVCIVMG GS+RTTFPLWTS IAFLLYPFSLALVYVLDY+FGWS
Sbjct: 1 MARKHRPSISLTL-FICLILCGIACGRFIGDDGS-DLVLDGVHSQQEQQRFSPVIRMFSAAE-ETCEQTYGFMPCTTTVLGNLFLIVIYGYLMFLAATFLSSGSELLLEILGPGLIGGLFLPILGALPDAMLILVSGLSGSAETAQSQVSVGIGLLAGSTVMLLTVIWGACVTVGKCDIENHVAKDLQDTKGFSLTGSGVSTDIWTCYAAIIMAVSVLPFLVVQLPQMLKSNSGRHLAVLIALIVSVALLISYCLYQVFQPWIQRRRLAFTKHKRVISGILNHLKMRALGRLCNDDGTINMEVLEKLFNTIDEDKDGYLSSSELRALVIGIRFEEINLDENDAVEKVMKDFDTSRDSLISFDEFSYGISRWLDEAKGSRASQ----AGPGTMKYLEDFHEQTKREHYFLGEQSDEIVEGVDNPRWTTIKAVLLLLLGTVIAAVFADPLVDAVDNFSSATSIPSFFISFIALPLATNSSEAVSAIIFATRKKLRSASLTFSELYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVILIVCIVMGIFGSLRTTFPLWTSLIAFLLYPFSLALVYVLDYVFGWS 576
BLAST of XM_017397803.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TDK1 ((uncharacterized protein LOC105165426 {ECO:0000313|RefSeq:XP_011082732.1}))
HSP 1 Score: 845.114 bits (2182), Expect = 0.000e+0
Identity = 416/557 (74.69%), Postives = 477/557 (85.64%), Query Frame = 0
Match: A0A6I9TDK1 ((uncharacterized protein LOC105165426 {ECO:0000313|RefSeq:XP_011082732.1}))
HSP 1 Score: 845.114 bits (2182), Expect = 0.000e+0
Identity = 416/557 (74.69%), Postives = 477/557 (85.64%), Query Frame = 0
Query: 19 LSSARLLPNTTAVDLISDG--STQSQPLLRLYATSEAKECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPNREVIEKLFMAIDTDHDNFLSASELRALILGIRFDEINLNEDDASAKLLKDFDSTLDEKIDLDEFICGIKNWLDEAMGLRDSSPQDTAGGETIKHLTRYHEQTKREHFLLGDQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 573
L+ R + + + DL+SDG S++ LRLYA E CE+TYGF+PCT+T LGNLFLIL YGYLMFLAATYLS GSELLLEILGPGIVGGLFLP+LGALPDAMLILVSG+SG+VETAQ QVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDI + VA+D +DT+G SLTGSG++ DIWTSYA +IMA+S+LPF++VQLPQ+LHS SGRHL+VLI L++S SLL+SYCLYQVFQPW+QRRR+ YAKHKHVISG+LKHLKMRALGRL E G PN EV+EKLF AID + D LS SELRALILGI+F+EINL+ +DA K++KDFD +LD ++DL EFI G+ WL EA + + AG ++K++ +H QTKR+H LLGDQSDE+VEG ENP+W +IKAVLLLLLG IAAAFADPLVDAVDNFS AT IP+FFISFIALP ATNSSEAVSAIIFA+RKKLRSASLTFSELYGAVTMNN LCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMG S+RTTFPLWT+ +AFLLYPFSLALVYVLDY+FGWS
Sbjct: 22 LTYGRFIADQS--DLVSDGVHSSKLPNFLRLYAAEET--CEQTYGFMPCTSTALGNLFLILVYGYLMFLAATYLSTGSELLLEILGPGIVGGLFLPMLGALPDAMLILVSGLSGSVETAQSQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIVNHVAVDSQDTKGFSLTGSGISTDIWTSYAGIIMAISVLPFIIVQLPQILHSNSGRHLSVLIGLIVSASLLVSYCLYQVFQPWVQRRRLAYAKHKHVISGILKHLKMRALGRLSTEDGRPNEEVLEKLFKAIDENEDGHLSHSELRALILGIQFNEINLDREDAVEKVMKDFDISLDSRVDLREFIHGVGRWLQEARAV-----SNYAG--SMKYIDDFHMQTKRDHDLLGDQSDEIVEGFENPRWNSIKAVLLLLLGTAIAAAFADPLVDAVDNFSDATKIPTFFISFIALPLATNSSEAVSAIIFATRKKLRSASLTFSELYGAVTMNNALCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGVFASIRTTFPLWTAFLAFLLYPFSLALVYVLDYVFGWS 567
BLAST of XM_017397803.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A3N4 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50251.1}))
HSP 1 Score: 842.032 bits (2174), Expect = 0.000e+0
Identity = 425/578 (73.53%), Postives = 489/578 (84.60%), Query Frame = 0
Match: A0A5B7A3N4 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50251.1}))
HSP 1 Score: 842.032 bits (2174), Expect = 0.000e+0
Identity = 425/578 (73.53%), Postives = 489/578 (84.60%), Query Frame = 0
Query: 1 MADKQSLTLAFSLILLLSLSSARLLPN--TTAVDLISDG---STQSQPLLRLYATSEAKECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPNREVIEKLFMAIDTDHDNFLSASELRALILGIRFDEINLNEDDASAKLLKDFDSTLDEKIDLDEFICGIKNWLDEAMGLRDSSPQDTAGGETIKHLTRYHEQTKREHFLLGDQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 573
MA +QSLT +L++L L+ RL+ + +T DLISDG + LLRL + C++TYGF+PCTTT LGNLFLI+ YGYLMFLAATYLS GSELLL+ILGPGIVGGLFLPVLGALPDAMLILVSG+SG+ TAQ QVSVGMGLLAGSTVMLLTVIWGTCVVVGKCD++ S+A DGKD +G SLTGSGV+ DIWTSYAA IMA+S++PFLVVQLPQVLHSTSGRHLAVLIAL++S+ LL+SYCLYQVFQPWIQ RR+ YAKHKHVISG+LKHL+ R+LGRLL + G+PN + I KLF ID + D +S ELRA I+GIRF+EINL+EDDA K++KDFD++ + +I+ +EFI GI WL+EA DSS + G IK+L+ +HEQTKREH LLGDQSDEVVEGVENP+WT+ KAVLLLLLG VIAAAFADPLVDAVDNFSSAT IP+FFISFIALP ATNSSEAV+AIIFASRKK R+ASLTFSELYGAVTMNN+LCLSVFLALVYVRGL WDFS+EVLVILIVCIVMGA S RT FPLWT+SIAF+LYPFSLALVYVLDY+FGWS
Sbjct: 1 MAVRQSLTFLTTLLILCGLAYGRLITDRPSTRSDLISDGVHHDFRGPSLLRLNPFYASDSCDQTYGFMPCTTTALGNLFLIIVYGYLMFLAATYLSNGSELLLKILGPGIVGGLFLPVLGALPDAMLILVSGLSGSTGTAQSQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDLQGSIATDGKDIKGFSLTGSGVSTDIWTSYAARIMAISVIPFLVVQLPQVLHSTSGRHLAVLIALIVSLVLLVSYCLYQVFQPWIQSRRLAYAKHKHVISGILKHLRKRSLGRLLTDDGKPNLDFIAKLFTMIDGNGDGSISLPELRAFIVGIRFEEINLDEDDAVDKVMKDFDTSHNSQIEPEEFINGISKWLEEAKHSGDSSSKAHPGA--IKYLSNFHEQTKREHDLLGDQSDEVVEGVENPRWTSFKAVLLLLLGTVIAAAFADPLVDAVDNFSSATGIPTFFISFIALPMATNSSEAVTAIIFASRKKQRTASLTFSELYGAVTMNNLLCLSVFLALVYVRGLTWDFSAEVLVILIVCIVMGAFASFRTIFPLWTTSIAFMLYPFSLALVYVLDYVFGWS 576
BLAST of XM_017397803.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UE49 ((Uncharacterized protein {ECO:0000313|EMBL:OAY28735.1}))
HSP 1 Score: 838.565 bits (2165), Expect = 0.000e+0
Identity = 411/567 (72.49%), Postives = 485/567 (85.54%), Query Frame = 0
Match: A0A2C9UE49 ((Uncharacterized protein {ECO:0000313|EMBL:OAY28735.1}))
HSP 1 Score: 838.565 bits (2165), Expect = 0.000e+0
Identity = 411/567 (72.49%), Postives = 485/567 (85.54%), Query Frame = 0
Query: 17 LSLSSARLLPNTTAVDLISDG--STQSQPLLRLYATSEAKECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIEDS--VAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPNREVIEKLFMAIDTDHDNFLSASELRALILGIRFDEINLNEDDASAKLLKDFDSTLDEKIDLDEFICGIKNWLDEAMGLRDSSPQDTAGGETIKHLTRYHEQTKREHFLLG------DQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 573
+S ++RL+ ++ DLISDG S ++ P L L S + CE+TYGF+PCT+T LGNLFLI+ YGYLMFLAATYLS GSELLLEILGPGIVGGLFLP+LGALPDAMLILVSG+SG+ TAQ QVSVGMGLLAGSTVMLLT IWG+C+VVGKCD+ D+ VAI+GK+TRG SLTGSGV+ DIWT YAA IM +S+LPF++VQLPQ+L+STSGRHLAVLIAL+IS+S+LISYCLYQVFQPWIQRRR+++AKHKHVISG+LKHL+ R+LGR L E G PNR+V+EKLF AID D++ LSASEL+ALILGIRF+EI+ + DDA K++KDFD++LD IDLDEFI GI W++EA R + +G TIK + +H QT+REH LLG +QSDEVVEGVENP+W +IKAVL+LLLG +IAAAFADPLVDAVDNFS+ATSIP+FFISFIALP ATN+SEAVSAIIFA+RK +R+ASLTFSELYGAVTMNN+LCLSVFLA+VYVRGL WDFSSEVLVI IVCIVMGA S R+TFPLWTSS+A+LLYPFSLALVYVLDY+FGWS
Sbjct: 21 VSAVNSRLISSSHPSDLISDGVHSLRTPPYLLLDPLSSEESCEQTYGFMPCTSTALGNLFLIIVYGYLMFLAATYLSNGSELLLEILGPGIVGGLFLPMLGALPDAMLILVSGLSGSTATAQSQVSVGMGLLAGSTVMLLTFIWGSCIVVGKCDLRDTDHVAINGKNTRGFSLTGSGVSTDIWTCYAARIMVISVLPFIIVQLPQILNSTSGRHLAVLIALIISLSMLISYCLYQVFQPWIQRRRLEFAKHKHVISGILKHLRERSLGRFLTEDGRPNRDVMEKLFHAIDEDNNKKLSASELKALILGIRFEEIDFDRDDAVDKVMKDFDTSLDNSIDLDEFISGISKWIEEAK--RSGAVVADSGSRTIKLIDHFHVQTRREHALLGPEDPVEEQSDEVVEGVENPRWISIKAVLMLLLGTIIAAAFADPLVDAVDNFSNATSIPTFFISFIALPLATNASEAVSAIIFATRKTVRTASLTFSELYGAVTMNNLLCLSVFLAIVYVRGLTWDFSSEVLVIFIVCIVMGAFASFRSTFPLWTSSVAYLLYPFSLALVYVLDYVFGWS 585
BLAST of XM_017397803.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2H5PU46 ((Uncharacterized protein {ECO:0000313|EMBL:GAY55874.1}))
HSP 1 Score: 833.558 bits (2152), Expect = 0.000e+0
Identity = 412/568 (72.54%), Postives = 477/568 (83.98%), Query Frame = 0
Match: A0A2H5PU46 ((Uncharacterized protein {ECO:0000313|EMBL:GAY55874.1}))
HSP 1 Score: 833.558 bits (2152), Expect = 0.000e+0
Identity = 412/568 (72.54%), Postives = 477/568 (83.98%), Query Frame = 0
Query: 23 RLLPNTTAVDLISDGSTQSQ-------------PLLRLYATSEAKECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIE--DSVAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPNREVIEKLFMAIDTDHDNFLSASELRALILGIRFDEINLNEDDASAKLLKDFDSTLDEKIDLDEFICGIKNWLDEAMGLRDSSPQDTAGGETIKHLTRYHEQTKREHFLLG--DQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 573
R +P +T DLISDG + P ++ S + CE+TYGFLPCTTTVLGNLFLI+ YGYLM++AATYLS GSELLLEILGPG+VGGLFLP+LGALPDAMLILVSG+SGT ETAQ QVSVGMGLLAGSTVML TVIWGTCVVVGKCD+ DSVAIDG++T+G LTG+GV+ D+WT YAA IMA+S++PF+VVQLPQ+L+STSGRHLAVLIAL++SVS+LISYCLYQVFQPWIQ+RR+ +AKHKHVISG+LKHL+ RALGRLL + GEPN +VI+KLF AID + D LSASEL+ALI+GIRF+EI+L++DDA +K+L DFD++ D ID+ EFI GI+ WL+EAM R S G T+K L +H QTKREH LLG ++SDEV EGVENP+W + KAVL+LL+G +IAAAFADPLVDAVDNFS+ATSIPSFFISFIALPFATNSSEAVSAIIFASRKK+R+ASLTFSELYGAVTMNNILCLSVFLALVY RGL WDFSSEVLVILIVC+VMGA S RT FPLWT SIA+ LYPFSLALVYVLDY FGWS
Sbjct: 26 RSVPYSTPSDLISDGINSNNNHNQRGPQYLLLNPFIKAEEESSSSTCEQTYGFLPCTTTVLGNLFLIIVYGYLMYVAATYLSNGSELLLEILGPGVVGGLFLPILGALPDAMLILVSGLSGTKETAQSQVSVGMGLLAGSTVMLSTVIWGTCVVVGKCDLRESDSVAIDGQNTKGFRLTGTGVSTDVWTCYAARIMAISVIPFVVVQLPQMLNSTSGRHLAVLIALILSVSMLISYCLYQVFQPWIQKRRLAFAKHKHVISGILKHLRQRALGRLLTDSGEPNIDVIKKLFDAIDENKDERLSASELKALIIGIRFEEIDLDQDDAVSKVLSDFDTSNDSHIDIKEFINGIEKWLNEAMQARTGSAD--PGPHTMKFLDDFHLQTKREHALLGAEEESDEVAEGVENPKWVSFKAVLMLLIGTIIAAAFADPLVDAVDNFSAATSIPSFFISFIALPFATNSSEAVSAIIFASRKKIRTASLTFSELYGAVTMNNILCLSVFLALVYARGLTWDFSSEVLVILIVCLVMGAFASFRTNFPLWTCSIAYALYPFSLALVYVLDYFFGWS 591
BLAST of XM_017397803.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4UFV6 ((Uncharacterized protein {ECO:0000313|EMBL:ESR64987.1}))
HSP 1 Score: 833.558 bits (2152), Expect = 0.000e+0
Identity = 412/568 (72.54%), Postives = 477/568 (83.98%), Query Frame = 0
Match: V4UFV6 ((Uncharacterized protein {ECO:0000313|EMBL:ESR64987.1}))
HSP 1 Score: 833.558 bits (2152), Expect = 0.000e+0
Identity = 412/568 (72.54%), Postives = 477/568 (83.98%), Query Frame = 0
Query: 23 RLLPNTTAVDLISDGSTQSQ-------------PLLRLYATSEAKECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIE--DSVAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPNREVIEKLFMAIDTDHDNFLSASELRALILGIRFDEINLNEDDASAKLLKDFDSTLDEKIDLDEFICGIKNWLDEAMGLRDSSPQDTAGGETIKHLTRYHEQTKREHFLLG--DQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 573
R +P +T DLISDG + P ++ S + CE+TYGFLPCTTTVLGNLFLI+ YGYLM++AATYLS GSELLLEILGPG+VGGLFLP+LGALPDAMLILVSG+SGT ETAQ QVSVGMGLLAGSTVML TVIWGTCVVVGKCD+ DSVAIDG++T+G LTG+GV+ D+WT YAA IMA+S++PF+VVQLPQ+L+STSGRHLAVLIAL++SVS+LISYCLYQVFQPWIQ+RR+ +AKHKHVISG+LKHL+ RALGRLL + GEPN +VI+KLF AID + D LSASEL+ALI+GIRF+EI+L++DDA +K+L DFD++ D ID+ EFI GI+ WL+EAM R S G T+K L +H QTKREH LLG ++SDEV EGVENP+W + KAVL+LL+G +IAAAFADPLVDAVDNFS+ATSIPSFFISFIALPFATNSSEAVSAIIFASRKK+R+ASLTFSELYGAVTMNNILCLSVFLALVY RGL WDFSSEVLVILIVC+VMGA S RT FPLWT SIA+ LYPFSLALVYVLDY FGWS
Sbjct: 26 RSVPYSTPSDLISDGINSNNNHNQRGPQYLLLNPFIKAEEESSSSTCEQTYGFLPCTTTVLGNLFLIIVYGYLMYVAATYLSNGSELLLEILGPGVVGGLFLPILGALPDAMLILVSGLSGTKETAQSQVSVGMGLLAGSTVMLSTVIWGTCVVVGKCDLRESDSVAIDGQNTKGFRLTGTGVSTDVWTCYAARIMAISVIPFVVVQLPQMLNSTSGRHLAVLIALILSVSMLISYCLYQVFQPWIQKRRLAFAKHKHVISGILKHLRQRALGRLLTDSGEPNIDVIKKLFDAIDENKDERLSASELKALIIGIRFEEIDLDQDDAVSKVLSDFDTSNDSHIDIKEFINGIEKWLNEAMQARTGSAD--PGPHTMKFLDDFHLQTKREHALLGAEEESDEVAEGVENPKWVSFKAVLMLLIGTIIAAAFADPLVDAVDNFSAATSIPSFFISFIALPFATNSSEAVSAIIFASRKKIRTASLTFSELYGAVTMNNILCLSVFLALVYARGLTWDFSSEVLVILIVCLVMGAFASFRTNFPLWTCSIAYALYPFSLALVYVLDYFFGWS 591
BLAST of XM_017397803.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067ETR2 ((Uncharacterized protein {ECO:0000313|EMBL:KDO58493.1}))
HSP 1 Score: 833.558 bits (2152), Expect = 0.000e+0
Identity = 412/568 (72.54%), Postives = 477/568 (83.98%), Query Frame = 0
Match: A0A067ETR2 ((Uncharacterized protein {ECO:0000313|EMBL:KDO58493.1}))
HSP 1 Score: 833.558 bits (2152), Expect = 0.000e+0
Identity = 412/568 (72.54%), Postives = 477/568 (83.98%), Query Frame = 0
Query: 23 RLLPNTTAVDLISDGSTQSQ-------------PLLRLYATSEAKECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIE--DSVAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPNREVIEKLFMAIDTDHDNFLSASELRALILGIRFDEINLNEDDASAKLLKDFDSTLDEKIDLDEFICGIKNWLDEAMGLRDSSPQDTAGGETIKHLTRYHEQTKREHFLLG--DQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 573
R +P +T DLISDG + P ++ S + CE+TYGFLPCTTTVLGNLFLI+ YGYLM++AATYLS GSELLLEILGPG+VGGLFLP+LGALPDAMLILVSG+SGT ETAQ QVSVGMGLLAGSTVML TVIWGTCVVVGKCD+ DSVAIDG++T+G LTG+GV+ D+WT YAA IMA+S++PF+VVQLPQ+L+STSGRHLAVLIAL++SVS+LISYCLYQVFQPWIQ+RR+ +AKHKHVISG+LKHL+ RALGRLL + GEPN +VI+KLF AID + D LSASEL+ALI+GIRF+EI+L++DDA +K+L DFD++ D ID+ EFI GI+ WL+EAM R S G T+K L +H QTKREH LLG ++SDEV EGVENP+W + KAVL+LL+G +IAAAFADPLVDAVDNFS+ATSIPSFFISFIALPFATNSSEAVSAIIFASRKK+R+ASLTFSELYGAVTMNNILCLSVFLALVY RGL WDFSSEVLVILIVC+VMGA S RT FPLWT SIA+ LYPFSLALVYVLDY FGWS
Sbjct: 26 RSVPYSTPSDLISDGINSNNNHNQRGPQYLLLNPFIKAEEESSSSTCEQTYGFLPCTTTVLGNLFLIIVYGYLMYVAATYLSNGSELLLEILGPGVVGGLFLPILGALPDAMLILVSGLSGTKETAQSQVSVGMGLLAGSTVMLSTVIWGTCVVVGKCDLRESDSVAIDGQNTKGFRLTGTGVSTDVWTCYAARIMAISVIPFVVVQLPQMLNSTSGRHLAVLIALILSVSMLISYCLYQVFQPWIQKRRLAFAKHKHVISGILKHLRQRALGRLLTDSGEPNIDVIKKLFDAIDENKDERLSASELKALIIGIRFEEIDLDQDDAVSKVLSDFDTSNDSHIDIKEFINGIEKWLNEAMQARTGSAD--PGPHTMKFLDDFHLQTKREHALLGAEEESDEVAEGVENPKWVSFKAVLMLLIGTIIAAAFADPLVDAVDNFSAATSIPSFFISFIALPFATNSSEAVSAIIFASRKKIRTASLTFSELYGAVTMNNILCLSVFLALVYARGLTWDFSSEVLVILIVCLVMGAFASFRTNFPLWTCSIAYALYPFSLALVYVLDYFFGWS 591
BLAST of XM_017397803.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7CAF7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5730726.1}))
HSP 1 Score: 828.935 bits (2140), Expect = 0.000e+0
Identity = 412/561 (73.44%), Postives = 484/561 (86.27%), Query Frame = 0
Match: A0A7J7CAF7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5730726.1}))
HSP 1 Score: 828.935 bits (2140), Expect = 0.000e+0
Identity = 412/561 (73.44%), Postives = 484/561 (86.27%), Query Frame = 0
Query: 20 SSARLLPNTTAVDLISDG--STQSQPLLRLYATSEA---KECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPNREVIEKLFMAIDTDHDNFLSASELRALILGIRFDEINLNEDDASAKLLKDFDSTLDEKIDLDEFICGIKNWLDEAMGLRDSSPQDTAGGETIKHLTRYHEQTKREHFLLG--DQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 573
++ R LP +++DL+SDG S + P L L + S A + CE+TYGFLPCT T LGNLFLIL YGYLMF +ATYLS+GSELLLEILGPGI+GGLFLPVLGALPDAMLILVSG+SG+ ETAQ QVSVGMGLLAGSTVMLLTVIWGTC++VGKCDI DS+A DG++T+G SLTG+GV+ D+WT YAAMIMA+S++PFLVVQLPQVLHSTSGRHLAVLIAL+ISVS+LISYCLYQVFQPWIQRRRI YAKHKHVISG+LKH ALG+L+ + GEP+ + I+KLF+AID + D +SA+EL+ALI+GI F EI+L++DD+ KL++DFD++ + +ID++EF+ GI WLDEA R + + G +T K + +H QTKREH LLG DQSDEVVEGVEN +W + KAVL+LLLG +IAAAFADPLVDAVDNFS ATSIP+FFISFIALP ATNSSEAVSAIIFASRKKLR+ASLTFSE+YGAVTMNNILCLSVFLALVYVRGL WDFSSEVLVILIVCIVMGALGS+RTTFPLWT S+A+LLYPFSLALVYVLDY++GWS
Sbjct: 22 ANGRDLP--SSLDLVSDGLQSERDPPYLLLKSFSAAGVEESCEQTYGFLPCTKTTLGNLFLILVYGYLMFTSATYLSSGSELLLEILGPGIIGGLFLPVLGALPDAMLILVSGLSGSKETAQSQVSVGMGLLAGSTVMLLTVIWGTCIIVGKCDIHDSIARDGQNTKGFSLTGNGVSTDVWTCYAAMIMAISVIPFLVVQLPQVLHSTSGRHLAVLIALIISVSMLISYCLYQVFQPWIQRRRIVYAKHKHVISGMLKHF--HALGKLMTDDGEPDIDAIKKLFVAIDANKDEQISATELKALIIGIGFQEIDLDKDDSMTKLMEDFDTSGNSEIDMEEFVRGITKWLDEAK--RACATSEGRGSQTWKFIDDFHLQTKREHALLGPEDQSDEVVEGVENSRWISFKAVLMLLLGTIIAAAFADPLVDAVDNFSDATSIPTFFISFIALPLATNSSEAVSAIIFASRKKLRTASLTFSEIYGAVTMNNILCLSVFLALVYVRGLTWDFSSEVLVILIVCIVMGALGSLRTTFPLWTCSVAYLLYPFSLALVYVLDYVYGWS 576
BLAST of XM_017397803.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PSI0 ((Vacuolar cation/proton exchanger like {ECO:0000313|EMBL:PSR95710.1}))
HSP 1 Score: 827.78 bits (2137), Expect = 0.000e+0
Identity = 405/555 (72.97%), Postives = 474/555 (85.41%), Query Frame = 0
Match: A0A2R6PSI0 ((Vacuolar cation/proton exchanger like {ECO:0000313|EMBL:PSR95710.1}))
HSP 1 Score: 827.78 bits (2137), Expect = 0.000e+0
Identity = 405/555 (72.97%), Postives = 474/555 (85.41%), Query Frame = 0
Query: 20 SSARLLPNTTAVDLISDGSTQSQPLL-RLYATSEAKECEETYGFLPCTTTVLGNLFLILGYGYLMFLAATYLSAGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGISGTVETAQVQVSVGMGLLAGSTVMLLTVIWGTCVVVGKCDIEDSVAIDGKDTRGLSLTGSGVTADIWTSYAAMIMAVSILPFLVVQLPQVLHSTSGRHLAVLIALVISVSLLISYCLYQVFQPWIQRRRIDYAKHKHVISGVLKHLKMRALGRLLNERGEPNREVIEKLFMAIDTDHDNFLSASELRALILGIRFDEINLNEDDASAKLLKDFDSTLDEKIDLDEFICGIKNWLDEAMGLRDSSPQDTAGGETIKHLTRYHEQTKREHFLLGDQSDEVVEGVENPQWTTIKAVLLLLLGAVIAAAFADPLVDAVDNFSSATSIPSFFISFIALPFATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNILCLSVFLALVYVRGLVWDFSSEVLVILIVCIVMGALGSVRTTFPLWTSSIAFLLYPFSLALVYVLDYMFGWS 573
+ RL+ + DL+SDG S+PLL RL A A C++TYGF+PCT T GNLFLI YGYLM+L ATYLS GSELLLEILGPGIVGGLFLP+LGALPDAMLILVSG+SGT TAQ QVSVGMGLLAGSTVMLLTVIWGTCV+VGKCD++DS+A+DGKDT+G SLTGSGV++DIWTSYAA IMA+SI+PFLVVQ+PQV+HSTSG+HLAVLIAL++S+ +LISYCLYQVFQPWIQRRR+ YAKHKHVISG+L+HLK + LGRLL + G+PN E+IEKLF +D + D ++S +E+RALI+GIRFDEI+L+ED+A K++ +FD++ D +IDL EFI GI WL+ A +S + AG TIKHL +H QTKREH LLGDQSDEVVEGVENP+WT+IKA L+L+G +IAAAFADPLVDAVDNFS ATSIPSFFISFI LP ATNSSEAV+AIIFASRK+LRS+SLTFSELYGA TMNN+LCLSVFLALVY+R L WDFS+EVLVILIVC+VM A S RTTFPLWTS +AFLLYPFSLALVYVLDY+ GWS
Sbjct: 27 AEGRLIAGGSPSDLVSDGV--SRPLLLRLGA---ADSCDQTYGFMPCTATAAGNLFLIAVYGYLMYLGATYLSNGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGTTATAQSQVSVGMGLLAGSTVMLLTVIWGTCVIVGKCDLQDSIAVDGKDTKGFSLTGSGVSSDIWTSYAARIMAISIIPFLVVQIPQVMHSTSGKHLAVLIALIVSLLMLISYCLYQVFQPWIQRRRLVYAKHKHVISGILRHLKKQTLGRLLGDDGKPNEEMIEKLFKKVDGNGDGYISETEMRALIVGIRFDEIHLDEDEAMKKVMTEFDTSSDSRIDLPEFIAGITKWLEVAKHSGAASVE--AGPTTIKHLDNFHLQTKREHDLLGDQSDEVVEGVENPKWTSIKAASLVLVGTLIAAAFADPLVDAVDNFSDATSIPSFFISFIVLPLATNSSEAVTAIIFASRKRLRSSSLTFSELYGAATMNNVLCLSVFLALVYIRDLTWDFSAEVLVILIVCLVMSAFASFRTTFPLWTSLVAFLLYPFSLALVYVLDYVVGWS 574
| Match Name | Stats | Description |
|---|---|---|
| A0A6P6XJS6 | E-Value: 0.000e+0, PID: 73.93 | (sodium/calcium exchanger NCL-like {ECO:0000313|Re... [more] |
| A0A6P6SCN2 | E-Value: 0.000e+0, PID: 73.76 | (sodium/calcium exchanger NCL-like {ECO:0000313|Re... [more] |
| A0A6I9TDK1 | E-Value: 0.000e+0, PID: 74.69 | (uncharacterized protein LOC105165426 {ECO:0000313... [more] |
| A0A5B7A3N4 | E-Value: 0.000e+0, PID: 73.53 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5025... [more] |
| A0A2C9UE49 | E-Value: 0.000e+0, PID: 72.49 | (Uncharacterized protein {ECO:0000313|EMBL:OAY2873... [more] |
| A0A2H5PU46 | E-Value: 0.000e+0, PID: 72.54 | (Uncharacterized protein {ECO:0000313|EMBL:GAY5587... [more] |
| V4UFV6 | E-Value: 0.000e+0, PID: 72.54 | (Uncharacterized protein {ECO:0000313|EMBL:ESR6498... [more] |
| A0A067ETR2 | E-Value: 0.000e+0, PID: 72.54 | (Uncharacterized protein {ECO:0000313|EMBL:KDO5849... [more] |
| A0A7J7CAF7 | E-Value: 0.000e+0, PID: 73.44 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5730... [more] |
| A0A2R6PSI0 | E-Value: 0.000e+0, PID: 72.97 | (Vacuolar cation/proton exchanger like {ECO:000031... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |