Resource Type:
Polypeptide
Name:
XM_017398430.1
Identifier:
XM_017398430.1-protein
Sequence:
MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCER
CNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAA
ELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQADLC
IGAGNLKYGNKSNLWKGSSVAKADKKRANGDQQNESAKVTATKIGLSGAK
ELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLF
EMKGNGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNA
YFARQTSNLSFSGLTGDSSTGEYQDCGASPMLVMGEPPPWCTPESSLASS
TRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDY
DPLSQTRSF
Sequence Length:
409
Sequence Checksum:
d968fff30c84883892d8cbc8155e4029
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017398430.1, derives from mRNA, XM_017398430.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017398430.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017398430.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5B892 ((Uncharacterized protein {ECO:0000313|EMBL:KAF1001563.1}))
HSP 1 Score: 529.635 bits (1363), Expect = 0.000e+0
Identity = 268/409 (65.53%), Postives = 313/409 (76.53%), Query Frame = 0
Match: A0A6L5B892 ((Uncharacterized protein {ECO:0000313|EMBL:KAF1001563.1}))
HSP 1 Score: 529.635 bits (1363), Expect = 0.000e+0
Identity = 268/409 (65.53%), Postives = 313/409 (76.53%), Query Frame = 0
Query: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQADLCIGAGNLKYGNKSNLWKGSSVAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKG-NGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQTSNLSFSGLTGDSSTGEYQDCGASPMLVMGEPPPWCT--PESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQT 406
MGYMCDFCGEQRSMVYC+SDAACLCLSCDRS+HSANALSRRH RTL+CERCNLQPAFVRCVEE+ S CQNCDW H ++ + H+ QAV Y+GCPSA ELS IWSFL+DLPS + STCEQG+GSMSI D + N P S N L I +L+ N S+ WK S+ + D+ QQ+ AK T++KI GA EL E DD +EDFNMDELD NIEKYEELFGVGHNDPQ FN++GID LFEMK GA++ Y+AEGS +G +N+ +P SNA++ADS+ISCKT P+ FARQ SN+SFSG+TG S+ YQDC ASPML+MGEPPPWC+ ES S R+SAVQRYKDKKKTRKF+KRVRY TRKARADVRKR KGRFVKAGDAFDYDPLS++
Sbjct: 1 MGYMCDFCGEQRSMVYCQSDAACLCLSCDRSIHSANALSRRHPRTLLCERCNLQPAFVRCVEESSSLCQNCDWMVHVNA---SGHKRQAVKCYSGCPSANELSCIWSFLMDLPSALASTCEQGLGSMSIADDNLTNDKAPSRSINDRGLSINVTDLQNVNSSDGWKSPSMPQLDENLVY--QQSVFAKSTSSKI---GADELELHE-DDLHEDFNMDELDSNIEKYEELFGVGHNDPQQFFNNNGIDGLFEMKEMTGADTISPRPYVAEGSLIGWQNVMKPKGSNASAADSMISCKTNPSGCFARQISNISFSGVTGMSNDINYQDCDASPMLLMGEPPPWCSQGSESPSTSDIRNSAVQRYKDKKKTRKFDKRVRYETRKARADVRKREKGRFVKAGDAFDYDPLSKS 400
BLAST of XM_017398430.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A4T9 ((Putative B-box type zinc finger protein with CCT domain isoform 1 {ECO:0000313|EMBL:MPA51135.1}))
HSP 1 Score: 513.457 bits (1321), Expect = 5.196e-180
Identity = 263/412 (63.83%), Postives = 313/412 (75.97%), Query Frame = 0
Match: A0A5B7A4T9 ((Putative B-box type zinc finger protein with CCT domain isoform 1 {ECO:0000313|EMBL:MPA51135.1}))
HSP 1 Score: 513.457 bits (1321), Expect = 5.196e-180
Identity = 263/412 (63.83%), Postives = 313/412 (75.97%), Query Frame = 0
Query: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQADLCIGAGNLKYGNKSNLWKG-SSVAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKGNGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQT-SNLSFSGLTGDSSTGEYQDCGASPMLVMGEPP--PWCTPESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRS 408
MGY+CDFCGEQRSMVYCRSD A LCLSCDR+VHSANAL+RRHSRTL+CERCN QPAF+RC+EE +S CQ CDW HG S T H+ VN Y+GCPSAAELS IWSF+LD PS DSTCEQG+GSMSI D S N NN + + ++K ++S +W G SS+ + + K + DQ SA T+ KI +G K EDD +YE+FNMDE+DLNIE YEELFGV N+P+ LF + GIDSLF M +GA+ NCQ A++AEGSS+GL N QPA SNAASADS++S KTEPN F RQ S+LSFSGLTG+SS G+YQDCGAS ML+ GEPP P C PE+ L S+ R+SAV RYK+KK RKFEKRVRYA+RKARADVR+RVKGRFVKAGD++DYDPLSQT+S
Sbjct: 1 MGYICDFCGEQRSMVYCRSDVASLCLSCDRNVHSANALARRHSRTLLCERCNSQPAFIRCIEERISLCQKCDWMGHGHDGSST-HKRLTVNYYSGCPSAAELSTIWSFVLDFPSAGDSTCEQGLGSMSISDNSPRN----CQENNNGPVIVEVNDVKEADRSGIWMGSSSMTQLNIKPHSVDQPVLSANATSPKICCAGTKVTGMCEDDGFYENFNMDEVDLNIENYEELFGVTLNNPEQLFENGGIDSLFGMDMSGADFNCQSAHLAEGSSIGLVNALQPACSNAASADSMMSSKTEPNLCFTRQAHSSLSFSGLTGESSAGDYQDCGASSMLLTGEPPWYPPC-PENHL-SANRNSAVMRYKEKKAARKFEKRVRYASRKARADVRRRVKGRFVKAGDSYDYDPLSQTKS 405
BLAST of XM_017398430.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A4Z1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8524902.1}))
HSP 1 Score: 511.916 bits (1317), Expect = 2.670e-179
Identity = 271/415 (65.30%), Postives = 313/415 (75.42%), Query Frame = 0
Match: A0A5J5A4Z1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8524902.1}))
HSP 1 Score: 511.916 bits (1317), Expect = 2.670e-179
Identity = 271/415 (65.30%), Postives = 313/415 (75.42%), Query Frame = 0
Query: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANF-GTPMGSNNQ-ADLCIGAGNLKYGNKSNLWKG-SSVAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKGN-GANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQT-SNLSFSGLTGDSSTGEYQDCGASPMLVMGEPPPWCTP-ESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRSF 409
MG MCDFCGEQRSMVYCRSDAACLCLSCDR+VHSANALSRRHSRTL+CE+CN QPAFVRCVEE +S CQNCDW H S+ + H+ VN Y+GCPSAAELS IWSF+LD PS DSTCEQG GSMSI D S N G P +N Q A + + ++ +K +WKG SS+ + + K N Q SA T+ KI + K EDD +YEDF+MDE+DLNIE YEE FGV NDP+ LF +DGIDSLF MK G +SN Q A +AEGSS GL + QPA SN ASADSI+S KTEP RQ S+LSFSGLTG+SS G+YQDCGAS ML+MGE PPWC+P S AS+TRSSAV RYK+KKK RKFEKRVRYA+RKARADVR+RVKGRF+KAGDA+DYDPLSQTRS+
Sbjct: 1 MGRMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCEKCNSQPAFVRCVEERISLCQNCDWMEHDGSSLVSTHKRLNVNCYSGCPSAAELSTIWSFILDFPSAGDSTCEQGFGSMSISDNSMKNCQGRPENNNGQDAPVVVEVNDVTDMDKLGVWKGSSSMRQLNIKSHNVGQPAVSATATSPKICCARTKVPRIGEDDCFYEDFDMDEVDLNIENYEEFFGVALNDPEQLF-EDGIDSLFGMKDMFGVDSNYQSACVAEGSSNGLVHGLQPACSNPASADSIMSSKTEPKFCLTRQAHSSLSFSGLTGESSAGDYQDCGASSMLLMGE-PPWCSPCPESHASTTRSSAVMRYKEKKKARKFEKRVRYASRKARADVRRRVKGRFIKAGDAYDYDPLSQTRSY 413
BLAST of XM_017398430.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4A548 ((zinc finger protein CONSTANS-LIKE 9-like {ECO:0000313|RefSeq:XP_015880870.1, ECO:0000313|RefSeq:XP_015880871.1}))
HSP 1 Score: 503.442 bits (1295), Expect = 6.458e-176
Identity = 264/414 (63.77%), Postives = 307/414 (74.15%), Query Frame = 0
Match: A0A6P4A548 ((zinc finger protein CONSTANS-LIKE 9-like {ECO:0000313|RefSeq:XP_015880870.1, ECO:0000313|RefSeq:XP_015880871.1}))
HSP 1 Score: 503.442 bits (1295), Expect = 6.458e-176
Identity = 264/414 (63.77%), Postives = 307/414 (74.15%), Query Frame = 0
Query: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQADLCIGAGNLKYGNKSNLWK-GSSVAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKG-NGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYF--ARQTSNLSFSGLTGDSSTGEYQDCGASPMLVMGEPPPWCTP--ESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRS 408
MGY+CDFCG+QRSMVYCRSDAACLCLSCDR+VHSANALSRRHSRTL+CERCN QPA VRC EE +S CQNCDW HG+S S ++H+ Q +N Y+GCPSAAELS+IWSF+LD PSV +S CEQ +G MSI + S N S N + NK +LW SSV + + DQ SA VT K+ G K EDDD YEDFNMDE+DLN+E YEELFG+ N+ + L + GIDSLF K +GA+SNCQ A AEGSSVGL N QPA SNAASADS++S KTEP F + SNLSFSGLTG+SS G+YQDCGAS ML+MGE PPWC P + +L S++RS AV RYK+KKKTRKFEKRVRYA+RKARADVRKRVKGRFVKAGDA+DYDPL+QTRS
Sbjct: 1 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPALVRCSEERVSLCQNCDWMGHGNSTSASSHKRQTINCYSGCPSAAELSSIWSFVLDFPSVGESACEQEMGMMSITENSTENAWD--SSENASGSARVNDVPSMDNKPSLWACSSSVPEHNSAAQVLDQPVGSASVTLPKLCCPGTKGPGLCEDDDLYEDFNMDEMDLNLENYEELFGMALNNSEELLENGGIDSLFGTKDMSGADSNCQGAVAAEGSSVGLVNAMQPACSNAASADSVMSTKTEPILCFNTKQAHSNLSFSGLTGESSAGDYQDCGASSMLLMGE-PPWCPPPCQENLQSASRSDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAGDAYDYDPLNQTRS 411
BLAST of XM_017398430.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7P0R9 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4106822.1}))
HSP 1 Score: 491.886 bits (1265), Expect = 1.431e-171
Identity = 261/416 (62.74%), Postives = 303/416 (72.84%), Query Frame = 0
Match: A0A6S7P0R9 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4106822.1}))
HSP 1 Score: 491.886 bits (1265), Expect = 1.431e-171
Identity = 261/416 (62.74%), Postives = 303/416 (72.84%), Query Frame = 0
Query: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQADLCIGAGNLKYGNKSNLWKGSSVAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKGNGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQTSNLSFSGLTGDSSTGEYQDCGA-SPMLVMGEPPPWC------TPESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRSF 409
MGY CD CGE RSMVYCRSDAA LCLSCDR VHSANALS+RHSRTLVC+RCN QPA VRCVEE +S CQNCDW H N T H Q +N Y+GCPSA ELS+IWSF+ +LPSV+DSTCEQGIGSMSI D S P SNN D + N+SNLW GSS D K+ N QQ +++KI SG K+ +D+ +Y DFNMDE+DL+IE YEELFGVGHNDP+HLF DGID LF GA SN +Y A+ SS G N QPA SNAASADS++SCKTEPN + RQ SN+SFS LTG+SS GEYQDCGA S M++MGEPP + + +++ A +RS AV RY++KKK RKFEKRVRYATRKARADVRKRVKGRFVKAGDA+DYDP+SQTRS+
Sbjct: 1 MGYQCDHCGEARSMVYCRSDAAYLCLSCDRVVHSANALSKRHSRTLVCDRCNSQPAVVRCVEEKVSLCQNCDWVGH---NGSTTHSRQTLNCYSGCPSAVELSSIWSFMTELPSVIDSTCEQGIGSMSIADNSQG----PSRSNNNQDAVV--------NESNLWTGSSSVCVDDKQENVVQQVGQLNSSSSKISHSGKKDAEACDDEGFYVDFNMDEVDLSIENYEELFGVGHNDPEHLFAKDGIDCLF----GGAESNFHGSYAAKESSTGHGNQVQPACSNAASADSLMSCKTEPNPCYGRQHSNISFSSLTGESSAGEYQDCGASSSMILMGEPPWFIQGGGGGSDQTTAAIGSRSDAVLRYREKKKMRKFEKRVRYATRKARADVRKRVKGRFVKAGDAYDYDPMSQTRSY 397
BLAST of XM_017398430.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6M4C0 ((Uncharacterized protein {ECO:0000313|EMBL:PLY94339.1}))
HSP 1 Score: 491.886 bits (1265), Expect = 2.024e-171
Identity = 263/428 (61.45%), Postives = 304/428 (71.03%), Query Frame = 0
Match: A0A2J6M4C0 ((Uncharacterized protein {ECO:0000313|EMBL:PLY94339.1}))
HSP 1 Score: 491.886 bits (1265), Expect = 2.024e-171
Identity = 263/428 (61.45%), Postives = 304/428 (71.03%), Query Frame = 0
Query: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQADLCIGAGNLKYGNKSNLWKGSSVAKADKKRANGDQQ--------NESAKVTATKIGLSGAK--ELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKGNGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQTSNLSFSGLTGDSSTGEYQDCGA-SPMLVMGEPPPWC--------TPESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRSF 409
MGY CD CGE RSMVYCRSDAA LCLSCDR VHSANALS+RHSRTLVC+RCN QPA VRCVEE +S CQNCDW H N T H Q +N Y+GCPSA ELS+IWSF+ +LPSV+DSTCEQGIGSMSI D S P SNN D+ N+SNL GSS D K+ N QQ +++ + K+ SG K E +DD +Y DFNMDE+DL+IE YEELFGVGHNDP+HLF DGID LF GA SNC +Y A+ SS G N QPA SNAASADS++SCKTEPN + RQ SN+SFS LTG+SS GEYQDCGA S ML+MGEPP + + +++ A +RS AV RY++KKK RKFEKRVRYATRKARADVRKRVKGRFVKAGDA+DYDP+SQTRS+
Sbjct: 1 MGYQCDHCGEARSMVYCRSDAAYLCLSCDRVVHSANALSKRHSRTLVCDRCNSQPAVVRCVEEKVSLCQNCDWVGH---NGSTTHSRQTLNCYSGCPSAVELSSIWSFMTELPSVIDSTCEQGIGSMSIADNSQG----PSRSNNNQDV--------VANESNLLTGSSSVHVDDKQENVVQQVGQLNSSSSKNKDLEWIKVSHSGKKDAEACDDDDDGFYVDFNMDEVDLSIENYEELFGVGHNDPEHLFAKDGIDCLF----GGAESNCHGSYAAKESSTGHGNQVQPACSNAASADSLMSCKTEPNPCYGRQHSNISFSSLTGESSAGEYQDCGASSSMLLMGEPPWFIQGGGGGGGSDQTTTAIGSRSDAVLRYREKKKMRKFEKRVRYATRKARADVRKRVKGRFVKAGDAYDYDPMSQTRSY 409
BLAST of XM_017398430.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QEA1 ((Zinc finger protein like {ECO:0000313|EMBL:PSS06477.1}))
HSP 1 Score: 489.189 bits (1258), Expect = 2.764e-170
Identity = 270/416 (64.90%), Postives = 323/416 (77.64%), Query Frame = 0
Match: A0A2R6QEA1 ((Zinc finger protein like {ECO:0000313|EMBL:PSS06477.1}))
HSP 1 Score: 489.189 bits (1258), Expect = 2.764e-170
Identity = 270/416 (64.90%), Postives = 323/416 (77.64%), Query Frame = 0
Query: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQAD--LCIGAGNLKYGNKSNLW-KGSSVAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKG-NGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQT-SNLSFSGLTGDSSTGEYQDCGASPMLVMGEPPPWCTP--ESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRSF 409
MGY+CDFCGEQRSMVYCRSDAACLCLSCDR+VHSANALSRRHSRTLVCERCN QPAFVRCVEE +S CQNCDW H S S + H+ Q VN Y+GCPSAAELS IWSF+ D+P+V DSTCE+G+ S+SI D S N G P+ SN+ D + + ++K +KS++W + SS+ + + K N DQQ A T++K+ GAK EDD +YEDFNMDE+DL+IE YEELFGV NDPQ LF +DGI SLF +K +G++ NCQ AY A+ SS + QPA SNAASADS++S KT+PN F RQ SNLSFSGLTG+S+ G++QDCGAS ML+MGE PPW P ESSL S++RSSAV RYK+KKKTRKFEK+VRYA RKARADVRKRVKGRFVKAG+A+DYDPLS+ RSF
Sbjct: 1 MGYLCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRCVEEKVSLCQNCDWLGHAGSTSASTHKRQTVNCYSGCPSAAELSTIWSFVSDIPAVTDSTCEKGLSSISIRDNSLTNCGGPLQSNDGQDASVLVEENDIKNVDKSSVWTESSSLPQLNTKPQNVDQQMGLANSTSSKMCCPGAKAPGQHEDDGFYEDFNMDEIDLDIENYEELFGVAFNDPQQLFGNDGIGSLFGVKNMSGSDLNCQSAYAAQDSS-----MMQPACSNAASADSMMSSKTDPNLCFGRQAHSNLSFSGLTGESNGGDFQDCGASSMLLMGE-PPWGPPCAESSLPSTSRSSAVMRYKEKKKTRKFEKKVRYAARKARADVRKRVKGRFVKAGEAYDYDPLSKRRSF 410
BLAST of XM_017398430.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4CZP9 ((Uncharacterized protein {ECO:0000313|EMBL:THF95392.1}))
HSP 1 Score: 488.419 bits (1256), Expect = 3.799e-170
Identity = 263/414 (63.53%), Postives = 315/414 (76.09%), Query Frame = 0
Match: A0A4S4CZP9 ((Uncharacterized protein {ECO:0000313|EMBL:THF95392.1}))
HSP 1 Score: 488.419 bits (1256), Expect = 3.799e-170
Identity = 263/414 (63.53%), Postives = 315/414 (76.09%), Query Frame = 0
Query: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQADLC--IGAGNLKYGNKSNLWKGSS-VAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKG-NGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQT-SNLSFSGLTGDSSTGEYQDCGASPMLVMGEPPPWCTPESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRSF 409
MGYMCDFCG+QRSMVYCRSDAACLCLSCDR+VHSANALSRRHSRTLVCERCN QPAF+RCVEE +S CQNCDW H S + H+ QAVN Y+GCPSAAELS IWSF+LD+PSV DSTCE+G+ MSI D S N P S + D+ I ++K +KS+ W GSS + + KR N T++K G K + EDD +YEDFNMDE+DLNIE YEE+FGV NDP+ LF +DGI SLF +K +GA+ N + Y AEGSS+GL QPA SN ASADS+IS KT+PN FA Q S++SFSGL+ +SS ++QDCGASPM++MGEPPPWC PESS S++RSSAV RY +KKKTRKF+K+VRYA+RKARADVR+RVKGRFVKAGDA+DYDPL++TRSF
Sbjct: 1 MGYMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFIRCVEERISLCQNCDWLGHTGSTEASTHKKQAVNCYSGCPSAAELSTIWSFVLDIPSVGDSTCEKGMSLMSITDNSLTNSMDPPQSKDGQDVSVFIEENDVKNIDKSSDWMGSSAMPELRTKRQN-------VNSTSSKTCCPGTKASDLEEDDKFYEDFNMDEVDLNIENYEEIFGVALNDPEQLFGNDGIGSLFGVKDMSGADLNRRGTYAAEGSSIGLVKSMQPAISNPASADSVISSKTDPNLCFATQAHSSISFSGLSVESSAADHQDCGASPMVLMGEPPPWC-PESSFPSTSRSSAVMRYMEKKKTRKFDKKVRYASRKARADVRRRVKGRFVKAGDAYDYDPLNETRSF 406
BLAST of XM_017398430.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4LHF3 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9457810.1}) (Fragment))
HSP 1 Score: 488.034 bits (1255), Expect = 3.840e-170
Identity = 253/414 (61.11%), Postives = 305/414 (73.67%), Query Frame = 0
Match: A0A6A4LHF3 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9457810.1}) (Fragment))
HSP 1 Score: 488.034 bits (1255), Expect = 3.840e-170
Identity = 253/414 (61.11%), Postives = 305/414 (73.67%), Query Frame = 0
Query: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQADLCIGA--GNLKYGNKSNLWKGSSVAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKGNGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQT-SNLSFSGLTGDSSTGEYQDCGASPMLVMGEPPPWCT--PESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRSF 409
MGY CDFCGEQRSMVYCRSDAACLCLSCDR+VHSANALSRRHSRTLVCERCN QPAFVRCVEE +S CQNCDW H +S SG+ H+ Q VN Y+GCPS+AELS IWSF+LD+PSV+DSTCE+G+ +M+I D S P S + D+ + ++K +KS++W GSS A + R G + S+K+ + K + EDD +YED NMD++DL++E YE+LFGV NDP+HLF +DGI SLF +KG A AE SS+G N QPA SN ASADS +S KTEPN FA+Q S LSFSG TG E QDCGAS ML++GE PPWC P++SL S+ RSSAV RYK+KKKTR+FEK+VRYA+RKARADVRKRVKGRFVKAG+A+DYDPLS+T SF
Sbjct: 1 MGYACDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRCVEEKISLCQNCDWSGHPNSTSGSNHKRQTVNCYSGCPSSAELSTIWSFVLDIPSVIDSTCEKGLSTMTIADSSPTKCEGPSQSKDGQDVSVPVEENDVKIVDKSSVWTGSS-AMPQRNRPTGLTNSTSSKMCCPE-----TKAPDLCEDDGFYEDLNMDDVDLDLENYEQLFGVAFNDPEHLFGNDGIGSLFGVKGISA---------AEESSMGKVNAMQPACSNXASADSFMSSKTEPNLGFAKQAHSTLSFSGSTGGDHQ-EIQDCGASSMLLLGE-PPWCPSCPDNSLPSTVRSSAVLRYKEKKKTRQFEKKVRYASRKARADVRKRVKGRFVKAGEAYDYDPLSKTMSF 397
BLAST of XM_017398430.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834GR93 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7140380.1}))
HSP 1 Score: 487.649 bits (1254), Expect = 7.398e-170
Identity = 251/414 (60.63%), Postives = 304/414 (73.43%), Query Frame = 0
Match: A0A834GR93 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7140380.1}))
HSP 1 Score: 487.649 bits (1254), Expect = 7.398e-170
Identity = 251/414 (60.63%), Postives = 304/414 (73.43%), Query Frame = 0
Query: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSRRHSRTLVCERCNLQPAFVRCVEENLSFCQNCDWKAHGSSNSGTAHRTQAVNSYAGCPSAAELSNIWSFLLDLPSVVDSTCEQGIGSMSIDDKSHANFGTPMGSNNQADLCIG--AGNLKYGNKSNLWKGSSVAKADKKRANGDQQNESAKVTATKIGLSGAKELNFREDDDYYEDFNMDELDLNIEKYEELFGVGHNDPQHLFNDDGIDSLFEMKGNGANSNCQEAYIAEGSSVGLENIAQPADSNAASADSIISCKTEPNAYFARQT-SNLSFSGLTGDSSTGEYQDCGASPMLVMGEPPPWCT--PESSLASSTRSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAGDAFDYDPLSQTRSF 409
MGY CDFCGEQRSMVYCRSDAACLCLSCDR+VHSANALSRRHSRTLVCERCNLQPAF+RCVEE +S CQNCDW H +S SG+ H+ Q VN Y+GCPS+AELS IWSF+LD+PSV+DSTCE+G+ +M+I D S P + + D+ + ++K +KS++W GSS + A E T++K+ K + EDD +YED NMD++DL++E YE+LFGV NDP+HLF +DGI SLF +KG A AE SS+G N QPA SN ASADS +S KTEPN FA+Q S LSFSG TG E QDCGAS ML++GE PPWC P++SL S+ RSSAV RYK+KKKTR+FEK+VRYA+RKARADVRKRVKGRFVKAG+A+DYDPLS+T SF
Sbjct: 1 MGYTCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNLQPAFIRCVEEKISLCQNCDWLGHPNSTSGSNHKRQTVNCYSGCPSSAELSTIWSFVLDIPSVIDSTCEKGLSTMTITDSSPTKCEGPSQNKDGQDVSVPVEVNDVKIVDKSSVWTGSSAMPQWNRPA------ELTNSTSSKMCSPETKAPDLCEDDGFYEDLNMDDVDLDLENYEQLFGVAFNDPEHLFGNDGIGSLFGVKGISA---------AEESSMGKVNAMQPACSNGASADSFMSSKTEPNLGFAKQAHSTLSFSGSTGGDHQ-EIQDCGASSMLLLGE-PPWCPPCPDNSLPSTIRSSAVLRYKEKKKTRQFEKKVRYASRKARADVRKRVKGRFVKAGEAYDYDPLSKTMSF 397
| Match Name | Stats | Description |
|---|---|---|
| A0A6L5B892 | E-Value: 0.000e+0, PID: 65.53 | (Uncharacterized protein {ECO:0000313|EMBL:KAF1001... [more] |
| A0A5B7A4T9 | E-Value: 5.196e-180, PID: 63.83 | (Putative B-box type zinc finger protein with CCT ... [more] |
| A0A5J5A4Z1 | E-Value: 2.670e-179, PID: 65.30 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8524... [more] |
| A0A6P4A548 | E-Value: 6.458e-176, PID: 63.77 | (zinc finger protein CONSTANS-LIKE 9-like {ECO:000... [more] |
| A0A6S7P0R9 | E-Value: 1.431e-171, PID: 62.74 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4106... [more] |
| A0A2J6M4C0 | E-Value: 2.024e-171, PID: 61.45 | (Uncharacterized protein {ECO:0000313|EMBL:PLY9433... [more] |
| A0A2R6QEA1 | E-Value: 2.764e-170, PID: 64.90 | (Zinc finger protein like {ECO:0000313|EMBL:PSS064... [more] |
| A0A4S4CZP9 | E-Value: 3.799e-170, PID: 63.53 | (Uncharacterized protein {ECO:0000313|EMBL:THF9539... [more] |
| A0A6A4LHF3 | E-Value: 3.840e-170, PID: 61.11 | (Uncharacterized protein {ECO:0000313|EMBL:KAE9457... [more] |
| A0A834GR93 | E-Value: 7.398e-170, PID: 60.63 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7140... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |