Resource Type:
Polypeptide
Name:
XM_017394242.1
Identifier:
XM_017394242.1-protein
Sequence:
MVGLSIGEKHFIEGGVAQDIRTDGRRRLVYRPIQLQTGVIPQANGSARVR
MGGTEVIASVKAELGRPSSLQPDKGKVFINVDCSPTADPIFEGRGGEELS
TELSGALQICLLGGKSGAGAAIDLSSLSIVGGKICWDLYIDGLVVSADGN
LLDALGAAIKAALSNTGIPKVNVAAGASSDEQPEVDISDEEFLQFDTSAV
PVIITLTEVGRHYIVDATPEEESHMNSAISMSVNRKGNICGLTKRGSAGL
DPSVILDMISVGIHVSEQLMNKLDSEIAAAEACEEE
Sequence Length:
286
Sequence Checksum:
37e8199e9e375d0d2154c5916a40406f
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017394242.1, derives from mRNA, XM_017394242.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017394242.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017394242.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0G4N9 ((3'-5'-exoribonuclease family protein {ECO:0000313|EMBL:GFZ05761.1}))
HSP 1 Score: 483.797 bits (1244), Expect = 3.488e-172
Identity = 235/286 (82.17%), Postives = 260/286 (90.91%), Query Frame = 0
Match: A0A7J0G4N9 ((3'-5'-exoribonuclease family protein {ECO:0000313|EMBL:GFZ05761.1}))
HSP 1 Score: 483.797 bits (1244), Expect = 3.488e-172
Identity = 235/286 (82.17%), Postives = 260/286 (90.91%), Query Frame = 0
Query: 1 MVGLSIGEKHFIEGGVAQDIRTDGRRRLVYRPIQLQTGVIPQANGSARVRMGGTEVIASVKAELGRPSSLQPDKGKVFINVDCSPTADPIFEGRGGEELSTELSGALQICLLGGKSGAGAAIDLSSLSIVGGKICWDLYIDGLVVSADGNLLDALGAAIKAALSNTGIPKVNVAAGASSDEQPEVDISDEEFLQFDTSAVPVIITLTEVGRHYIVDATPEEESHMNSAISMSVNRKGNICGLTKRGSAGLDPSVILDMISVGIHVSEQLMNKLDSEIAAAEACEEE 286
MVGLS+GEKHFI+GG+AQD+R+DGR+RL YRPI ++TG+IPQANGSARV++G T+VIASVKAELG+PS QPD+GKV I VDCSPTA PIFEGRGGEELS ELS ALQ LLGGKSG GA IDLSSLSIV GKICWDLYIDGLVVS+DGNLLDALGAAIKAALSNTGIPKVNVAA ASSDEQPEVDISDEE+LQFDTS VPVI+TLT+VGRHYIVDAT EEES M+SA+S+S+NR G ICGLTKRG AGLDPSVILDM SV HVSEQL+N L+SEI+AAEACEEE
Sbjct: 1 MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPISVETGIIPQANGSARVKLGATDVIASVKAELGKPSPFQPDRGKVAIYVDCSPTAAPIFEGRGGEELSAELSAALQRSLLGGKSGTGAGIDLSSLSIVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVAASASSDEQPEVDISDEEYLQFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSALSVSINRLGRICGLTKRGGAGLDPSVILDMTSVAKHVSEQLLNNLESEISAAEACEEE 286
BLAST of XM_017394242.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A022RSL7 ((Uncharacterized protein {ECO:0000313|EMBL:EYU42961.1}))
HSP 1 Score: 483.026 bits (1242), Expect = 7.452e-172
Identity = 233/286 (81.47%), Postives = 265/286 (92.66%), Query Frame = 0
Match: A0A022RSL7 ((Uncharacterized protein {ECO:0000313|EMBL:EYU42961.1}))
HSP 1 Score: 483.026 bits (1242), Expect = 7.452e-172
Identity = 233/286 (81.47%), Postives = 265/286 (92.66%), Query Frame = 0
Query: 1 MVGLSIGEKHFIEGGVAQDIRTDGRRRLVYRPIQLQTGVIPQANGSARVRMGGTEVIASVKAELGRPSSLQPDKGKVFINVDCSPTADPIFEGRGGEELSTELSGALQICLLGGKSGAGAAIDLSSLSIVGGKICWDLYIDGLVVSADGNLLDALGAAIKAALSNTGIPKVNVAAGASSDEQPEVDISDEEFLQFDTSAVPVIITLTEVGRHYIVDATPEEESHMNSAISMSVNRKGNICGLTKRGSAGLDPSVILDMISVGIHVSEQLMNKLDSEIAAAEACEEE 286
MVGLS+GE++FI+GG+AQD+RTDGR+RL YRPI ++TG+IPQA+GSARV++GGT+VIASVKAELGRP+ PDKGKV I VDCSPTA+P FEGRGGEELSTELS ALQ CLLGGKSG+GA IDLSSLSIV GK+CWDLYIDGLVVS+DGNLLDALGAAIKAALSNT IPKV VAA AS+D+QPEVD+SDEEFLQFDT+AVPVI+TLT+VGRHYIVDAT EEES M+SAIS+S+NR+G ICGLTKRG AGLDPS+ILDMISV HVSEQLMNKLDSEIAAAEAC+E+
Sbjct: 1 MVGLSLGEQNFIKGGIAQDLRTDGRKRLTYRPIFVETGIIPQASGSARVKLGGTDVIASVKAELGRPNPSHPDKGKVSIYVDCSPTAEPTFEGRGGEELSTELSSALQRCLLGGKSGSGAGIDLSSLSIVQGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALSNTAIPKVQVAANASADQQPEVDVSDEEFLQFDTTAVPVIVTLTKVGRHYIVDATTEEESQMSSAISVSINRQGGICGLTKRGGAGLDPSIILDMISVSKHVSEQLMNKLDSEIAAAEACDED 286
BLAST of XM_017394242.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4AUF7 ((exosome complex component RRP42 isoform X2 {ECO:0000313|RefSeq:XP_015900774.1}))
HSP 1 Score: 481.485 bits (1238), Expect = 2.401e-171
Identity = 236/286 (82.52%), Postives = 262/286 (91.61%), Query Frame = 0
Match: A0A6P4AUF7 ((exosome complex component RRP42 isoform X2 {ECO:0000313|RefSeq:XP_015900774.1}))
HSP 1 Score: 481.485 bits (1238), Expect = 2.401e-171
Identity = 236/286 (82.52%), Postives = 262/286 (91.61%), Query Frame = 0
Query: 1 MVGLSIGEKHFIEGGVAQDIRTDGRRRLVYRPIQLQTGVIPQANGSARVRMGGTEVIASVKAELGRPSSLQPDKGKVFINVDCSPTADPIFEGRGGEELSTELSGALQICLLGGKSGAGAAIDLSSLSIVGGKICWDLYIDGLVVSADGNLLDALGAAIKAALSNTGIPKVNVAAGASSDEQPEVDISDEEFLQFDTSAVPVIITLTEVGRHYIVDATPEEESHMNSAISMSVNRKGNICGLTKRGSAGLDPSVILDMISVGIHVSEQLMNKLDSEIAAAEACEEE 286
MVGLS+GEKHFI+GG+AQD+R+DGR+RL YRPI ++TGVIPQANGSARVR+G T+VIASVKAELG+P LQPDKGKV I VDCSPTA PIFEGRGGEELS ELS ALQ CLLGGKSGAGA I LSSL +V GKICWDLYIDGLVVS+DGNLLDALGAAIKAALSNTGIP+VNVAAGAS DE+PEVD+SDEEFLQFDTS VPVIITLT+VGRHYIVDAT EEES M+SA+S+SVNR+G+ICGLTKRG AG+DPS+ILDMISV HVSEQL+N+LDSEIAAAEA E E
Sbjct: 1 MVGLSLGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQANGSARVRLGATDVIASVKAELGKPHPLQPDKGKVAIYVDCSPTAAPIFEGRGGEELSMELSVALQRCLLGGKSGAGAGISLSSLVVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVNVAAGASGDEEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATTEEESQMSSAVSISVNRQGHICGLTKRGGAGVDPSIILDMISVAKHVSEQLLNQLDSEIAAAEARENE 286
BLAST of XM_017394242.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6QKP3 ((Uncharacterized protein {ECO:0000313|EMBL:KAE7998954.1}))
HSP 1 Score: 481.1 bits (1237), Expect = 4.109e-171
Identity = 234/286 (81.82%), Postives = 262/286 (91.61%), Query Frame = 0
Match: A0A5N6QKP3 ((Uncharacterized protein {ECO:0000313|EMBL:KAE7998954.1}))
HSP 1 Score: 481.1 bits (1237), Expect = 4.109e-171
Identity = 234/286 (81.82%), Postives = 262/286 (91.61%), Query Frame = 0
Query: 1 MVGLSIGEKHFIEGGVAQDIRTDGRRRLVYRPIQLQTGVIPQANGSARVRMGGTEVIASVKAELGRPSSLQPDKGKVFINVDCSPTADPIFEGRGGEELSTELSGALQICLLGGKSGAGAAIDLSSLSIVGGKICWDLYIDGLVVSADGNLLDALGAAIKAALSNTGIPKVNVAAGASSDEQPEVDISDEEFLQFDTSAVPVIITLTEVGRHYIVDATPEEESHMNSAISMSVNRKGNICGLTKRGSAGLDPSVILDMISVGIHVSEQLMNKLDSEIAAAEACEEE 286
MVGLS+GEKHFI+GG+AQD+R+DGR+RL YRPI ++TG IPQANGSARVRMG T VI++VKAELG+PSSLQPDKGKV I VDCSPTA+P+FEGRGG+ELS ELS ALQ CLLGGKSGAGA IDLSSL +V GKICWDLYID LVVS+DGNLLDALGAAIKAALSNTGIP+VNVA GAS D+QPEVDISDEEF+QFDTS +PVI+TLT+ GRHYIVDAT EEES MNSA+S+SVNRKG+ICGLTKRG AGLDPS+ILDMISV HVSEQL+NKLDSEIAAAEA E+E
Sbjct: 1 MVGLSLGEKHFIQGGIAQDLRSDGRKRLTYRPICVETGFIPQANGSARVRMGATNVISTVKAELGKPSSLQPDKGKVTIYVDCSPTAEPVFEGRGGDELSMELSVALQRCLLGGKSGAGAGIDLSSLIVVEGKICWDLYIDCLVVSSDGNLLDALGAAIKAALSNTGIPRVNVAVGASGDQQPEVDISDEEFMQFDTSDIPVIVTLTKAGRHYIVDATSEEESQMNSAVSISVNRKGHICGLTKRGGAGLDPSIILDMISVAKHVSEQLINKLDSEIAAAEADEDE 286
BLAST of XM_017394242.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2KTV2 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL02p019830:mrna}))
HSP 1 Score: 483.411 bits (1243), Expect = 1.083e-170
Identity = 237/286 (82.87%), Postives = 262/286 (91.61%), Query Frame = 0
Match: A0A7N2KTV2 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL02p019830:mrna}))
HSP 1 Score: 483.411 bits (1243), Expect = 1.083e-170
Identity = 237/286 (82.87%), Postives = 262/286 (91.61%), Query Frame = 0
Query: 1 MVGLSIGEKHFIEGGVAQDIRTDGRRRLVYRPIQLQTGVIPQANGSARVRMGGTEVIASVKAELGRPSSLQPDKGKVFINVDCSPTADPIFEGRGGEELSTELSGALQICLLGGKSGAGAAIDLSSLSIVGGKICWDLYIDGLVVSADGNLLDALGAAIKAALSNTGIPKVNVAAGASSDEQPEVDISDEEFLQFDTSAVPVIITLTEVGRHYIVDATPEEESHMNSAISMSVNRKGNICGLTKRGSAGLDPSVILDMISVGIHVSEQLMNKLDSEIAAAEACEEE 286
MVGLS+GEKHFI+GG+AQDIR+DGR+RL YRPI ++TGVIPQANGSAR+RMG T+VI++VKAELG+P SLQPDKGKV I VDCSPTA P+FEGRGGEELSTELS ALQ LLGGKSGAGA IDLSSL +V GKICWDLYID LVV +DGNLLDALGAAIKAALSNTGIP+V VAAGAS DEQPEVDISDEEFLQFDTS +PVI+TLT+VGRHYIVDAT EEES M+SAIS+SVNRKG+ICGLTKRG AGLDPS++LDMISV HVSEQLMNKLDSEIAAAEA E+E
Sbjct: 88 MVGLSLGEKHFIQGGIAQDIRSDGRKRLTYRPINVETGVIPQANGSARIRMGATDVISTVKAELGKPISLQPDKGKVSIYVDCSPTAAPMFEGRGGEELSTELSVALQRSLLGGKSGAGAGIDLSSLVVVEGKICWDLYIDCLVVCSDGNLLDALGAAIKAALSNTGIPRVQVAAGASGDEQPEVDISDEEFLQFDTSDIPVIVTLTKVGRHYIVDATTEEESQMSSAISISVNRKGHICGLTKRGGAGLDPSIVLDMISVAKHVSEQLMNKLDSEIAAAEAGEDE 373
BLAST of XM_017394242.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540KMR1 ((Uncharacterized protein {ECO:0000313|EMBL:TQD75511.1}))
HSP 1 Score: 479.559 bits (1233), Expect = 1.746e-170
Identity = 234/286 (81.82%), Postives = 264/286 (92.31%), Query Frame = 0
Match: A0A540KMR1 ((Uncharacterized protein {ECO:0000313|EMBL:TQD75511.1}))
HSP 1 Score: 479.559 bits (1233), Expect = 1.746e-170
Identity = 234/286 (81.82%), Postives = 264/286 (92.31%), Query Frame = 0
Query: 1 MVGLSIGEKHFIEGGVAQDIRTDGRRRLVYRPIQLQTGVIPQANGSARVRMGGTEVIASVKAELGRPSSLQPDKGKVFINVDCSPTADPIFEGRGGEELSTELSGALQICLLGGKSGAGAAIDLSSLSIVGGKICWDLYIDGLVVSADGNLLDALGAAIKAALSNTGIPKVNVAAGASSDEQPEVDISDEEFLQFDTSAVPVIITLTEVGRHYIVDATPEEESHMNSAISMSVNRKGNICGLTKRGSAGLDPSVILDMISVGIHVSEQLMNKLDSEIAAAEACEEE 286
MVGLSIGEKHFI+GG+AQDIR+DGR+RL RPI ++TGVI QANGSARVRMG T+VIASVKAELGRP++LQPDKGKVFINVDCSPTA P+FEGRGGEELS ELS AL+ CLLGGKSG+GA I+LSSL +V GKICWDLYIDGLVVS+DGNLLDALGAAIKAALSNTGIP+VNVAAGAS DEQPEVD+SDEEFLQFDTS VPVI+TLT+VG+HYIVDAT EEES M+SA+S+SVNR+G+ICGLTKRG AGLDPS+ILDM+SV VSEQL+N LDS+IAAAEA E+E
Sbjct: 1 MVGLSIGEKHFIQGGIAQDIRSDGRKRLTPRPINVKTGVISQANGSARVRMGATDVIASVKAELGRPTALQPDKGKVFINVDCSPTAAPMFEGRGGEELSAELSVALRHCLLGGKSGSGAGIELSSLVVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVNVAAGASGDEQPEVDVSDEEFLQFDTSKVPVIVTLTKVGKHYIVDATSEEESQMSSAVSISVNRQGHICGLTKRGGAGLDPSIILDMVSVAKTVSEQLINTLDSQIAAAEAGEDE 286
BLAST of XM_017394242.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B0I5 ((Putative exosome complex component RRP42 isoform X1 {ECO:0000313|EMBL:MPA61608.1}))
HSP 1 Score: 479.174 bits (1232), Expect = 2.322e-170
Identity = 233/286 (81.47%), Postives = 261/286 (91.26%), Query Frame = 0
Match: A0A5B7B0I5 ((Putative exosome complex component RRP42 isoform X1 {ECO:0000313|EMBL:MPA61608.1}))
HSP 1 Score: 479.174 bits (1232), Expect = 2.322e-170
Identity = 233/286 (81.47%), Postives = 261/286 (91.26%), Query Frame = 0
Query: 1 MVGLSIGEKHFIEGGVAQDIRTDGRRRLVYRPIQLQTGVIPQANGSARVRMGGTEVIASVKAELGRPSSLQPDKGKVFINVDCSPTADPIFEGRGGEELSTELSGALQICLLGGKSGAGAAIDLSSLSIVGGKICWDLYIDGLVVSADGNLLDALGAAIKAALSNTGIPKVNVAAGASSDEQPEVDISDEEFLQFDTSAVPVIITLTEVGRHYIVDATPEEESHMNSAISMSVNRKGNICGLTKRGSAGLDPSVILDMISVGIHVSEQLMNKLDSEIAAAEACEEE 286
MVGLS+GEKHFI+GG+AQD+R+DGR+RL YRPI ++TGVI QANGSARV+MG T+VIASVKAELGRPS PDKGKV I VDCSPTA P+FEGRGGE LSTELS ALQ CLLGGKSGAGA IDLS+LSIV GK+CWDLYIDGLV+S+DGNLLDALGAAIKAALSNTGIPKV+VAA SDEQPEVDISDEEFLQFDTS VPVI+TLT+VGR+YIVDAT EEES M+SA+S+S+NR+G ICGLTKRG AGLDPS+ILDMISV H+SEQL+NKLDSEI+AAEACEEE
Sbjct: 1 MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIAQANGSARVKMGATDVIASVKAELGRPSPSHPDKGKVSIYVDCSPTAAPMFEGRGGEGLSTELSTALQRCLLGGKSGAGAGIDLSTLSIVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVHVAANVPSDEQPEVDISDEEFLQFDTSGVPVIVTLTKVGRYYIVDATSEEESQMSSAVSVSINRQGRICGLTKRGGAGLDPSIILDMISVAKHLSEQLINKLDSEISAAEACEEE 286
BLAST of XM_017394242.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A396JP78 ((Putative exosome complex component Rrp42, archaea, PNPase/RNase PH domain-containing protein {ECO:0000313|EMBL:RHN78015.1}))
HSP 1 Score: 479.174 bits (1232), Expect = 2.639e-170
Identity = 230/285 (80.70%), Postives = 260/285 (91.23%), Query Frame = 0
Match: A0A396JP78 ((Putative exosome complex component Rrp42, archaea, PNPase/RNase PH domain-containing protein {ECO:0000313|EMBL:RHN78015.1}))
HSP 1 Score: 479.174 bits (1232), Expect = 2.639e-170
Identity = 230/285 (80.70%), Postives = 260/285 (91.23%), Query Frame = 0
Query: 1 MVGLSIGEKHFIEGGVAQDIRTDGRRRLVYRPIQLQTGVIPQANGSARVRMGGTEVIASVKAELGRPSSLQPDKGKVFINVDCSPTADPIFEGRGGEELSTELSGALQICLLGGKSGAGAAIDLSSLSIVGGKICWDLYIDGLVVSADGNLLDALGAAIKAALSNTGIPKVNVAAGASSDEQPEVDISDEEFLQFDTSAVPVIITLTEVGRHYIVDATPEEESHMNSAISMSVNRKGNICGLTKRGSAGLDPSVILDMISVGIHVSEQLMNKLDSEIAAAEACEE 285
MVGLS+GE+HFI+GG+AQD+R DGR+RL YRPI ++TGVIPQANGSARV++G TEVIASVKAELG+PSS+QPDKGKVFI +DCS TA+P FEGRGGEELS ELS ALQ CLLG KSGAGA ID +SL +V GKICWDLYIDGLVVS+DGNLLDALG+AIKAALSNTGIP V V A ASSDEQPEVD+SDEEFLQFDTS VPVIITLT++GRHYIVDATPEEES M+SA+S+S+NRKG+ICG+TKRG AGLDPSVILDM+SV HVSEQLMNKLDSEIA+AEA +E
Sbjct: 1 MVGLSLGEQHFIQGGIAQDLRCDGRKRLTYRPIHVETGVIPQANGSARVKIGATEVIASVKAELGKPSSMQPDKGKVFIYIDCSSTAEPAFEGRGGEELSAELSTALQRCLLGAKSGAGAGIDRTSLVVVEGKICWDLYIDGLVVSSDGNLLDALGSAIKAALSNTGIPSVKVTADASSDEQPEVDVSDEEFLQFDTSGVPVIITLTKIGRHYIVDATPEEESQMSSAVSISINRKGHICGITKRGGAGLDPSVILDMVSVAKHVSEQLMNKLDSEIASAEAEDE 285
BLAST of XM_017394242.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A830CZP5 ((Exosome complex component rrp42 {ECO:0000313|EMBL:GFQ03029.1}))
HSP 1 Score: 479.174 bits (1232), Expect = 2.836e-170
Identity = 232/286 (81.12%), Postives = 261/286 (91.26%), Query Frame = 0
Match: A0A830CZP5 ((Exosome complex component rrp42 {ECO:0000313|EMBL:GFQ03029.1}))
HSP 1 Score: 479.174 bits (1232), Expect = 2.836e-170
Identity = 232/286 (81.12%), Postives = 261/286 (91.26%), Query Frame = 0
Query: 1 MVGLSIGEKHFIEGGVAQDIRTDGRRRLVYRPIQLQTGVIPQANGSARVRMGGTEVIASVKAELGRPSSLQPDKGKVFINVDCSPTADPIFEGRGGEELSTELSGALQICLLGGKSGAGAAIDLSSLSIVGGKICWDLYIDGLVVSADGNLLDALGAAIKAALSNTGIPKVNVAAGASSDEQPEVDISDEEFLQFDTSAVPVIITLTEVGRHYIVDATPEEESHMNSAISMSVNRKGNICGLTKRGSAGLDPSVILDMISVGIHVSEQLMNKLDSEIAAAEACEEE 286
MVGLS+GE++FI+GG+AQD+RTDGR+RL YRPI ++TGVIPQA+GSARV+ G T+VIASVKAELG+P+ PDKGKV I VDCSPTA+P FEGRGGEELS ELS ALQ CLLGGKSGAGA IDLSSLSIV GK+CWDLYIDGLVVS+DGN+LDALGAAIKAALSNT IPKV VAA ASSDEQPEVD+SDEEFLQFDT+ VPV+ITLT+VGRHYIVDAT EEES M+SA+S+S+NR+G ICGLTKRG AGLDPSVILDMISV HVSEQLMNKLDSEIAAAEAC+E+
Sbjct: 1 MVGLSLGEQNFIKGGIAQDLRTDGRKRLAYRPISVETGVIPQASGSARVKFGATDVIASVKAELGKPNPSHPDKGKVSIYVDCSPTAEPTFEGRGGEELSAELSSALQRCLLGGKSGAGAGIDLSSLSIVEGKVCWDLYIDGLVVSSDGNVLDALGAAIKAALSNTAIPKVQVAANASSDEQPEVDVSDEEFLQFDTTGVPVLITLTKVGRHYIVDATTEEESQMSSALSVSINRQGQICGLTKRGGAGLDPSVILDMISVAKHVSEQLMNKLDSEIAAAEACDED 286
BLAST of XM_017394242.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4DW44 ((exosome complex component RRP42 {ECO:0000313|RefSeq:XP_018811366.1, ECO:0000313|RefSeq:XP_018811367.1}))
HSP 1 Score: 478.789 bits (1231), Expect = 3.226e-170
Identity = 234/286 (81.82%), Postives = 264/286 (92.31%), Query Frame = 0
Match: A0A2I4DW44 ((exosome complex component RRP42 {ECO:0000313|RefSeq:XP_018811366.1, ECO:0000313|RefSeq:XP_018811367.1}))
HSP 1 Score: 478.789 bits (1231), Expect = 3.226e-170
Identity = 234/286 (81.82%), Postives = 264/286 (92.31%), Query Frame = 0
Query: 1 MVGLSIGEKHFIEGGVAQDIRTDGRRRLVYRPIQLQTGVIPQANGSARVRMGGTEVIASVKAELGRPSSLQPDKGKVFINVDCSPTADPIFEGRGGEELSTELSGALQICLLGGKSGAGAAIDLSSLSIVGGKICWDLYIDGLVVSADGNLLDALGAAIKAALSNTGIPKVNVAAGASSDEQPEVDISDEEFLQFDTSAVPVIITLTEVGRHYIVDATPEEESHMNSAISMSVNRKGNICGLTKRGSAGLDPSVILDMISVGIHVSEQLMNKLDSEIAAAEACEEE 286
MVGLS+GEK+FI+GG+AQD+R+DGR+RL YRP+ ++TGVIPQANGSARVRMG T+VI+SVKAELG+PSSLQPDKGKV I VDCSPTA P+FEGRGG+ELST+LS ALQ CLLGGKSGAGA IDLSSL +V GK+CW LYID LVVS+DGNLLDALGAAIKAALSNTGIP+V VAAGAS DEQPEVDISDEEFLQFDTS VPVI+TLT+VGRHYIVDAT EEES M+SA+S+SVNRKG+ICGLTKRG AGLDPS++LDMISV HVSEQLMNKLDSEIAAAEA E++
Sbjct: 1 MVGLSLGEKNFIQGGIAQDLRSDGRKRLTYRPVSVETGVIPQANGSARVRMGATDVISSVKAELGKPSSLQPDKGKVSIYVDCSPTAAPMFEGRGGDELSTDLSVALQCCLLGGKSGAGAGIDLSSLIVVEGKMCWGLYIDCLVVSSDGNLLDALGAAIKAALSNTGIPRVLVAAGASGDEQPEVDISDEEFLQFDTSDVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRKGHICGLTKRGGAGLDPSIVLDMISVAKHVSEQLMNKLDSEIAAAEAVEDD 286
| Match Name | Stats | Description |
|---|---|---|
| A0A7J0G4N9 | E-Value: 3.488e-172, PID: 82.17 | (3'-5'-exoribonuclease family protein {ECO:0000313... [more] |
| A0A022RSL7 | E-Value: 7.452e-172, PID: 81.47 | (Uncharacterized protein {ECO:0000313|EMBL:EYU4296... [more] |
| A0A6P4AUF7 | E-Value: 2.401e-171, PID: 82.52 | (exosome complex component RRP42 isoform X2 {ECO:0... [more] |
| A0A5N6QKP3 | E-Value: 4.109e-171, PID: 81.82 | (Uncharacterized protein {ECO:0000313|EMBL:KAE7998... [more] |
| A0A7N2KTV2 | E-Value: 1.083e-170, PID: 82.87 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A540KMR1 | E-Value: 1.746e-170, PID: 81.82 | (Uncharacterized protein {ECO:0000313|EMBL:TQD7551... [more] |
| A0A5B7B0I5 | E-Value: 2.322e-170, PID: 81.47 | (Putative exosome complex component RRP42 isoform ... [more] |
| A0A396JP78 | E-Value: 2.639e-170, PID: 80.70 | (Putative exosome complex component Rrp42, archaea... [more] |
| A0A830CZP5 | E-Value: 2.836e-170, PID: 81.12 | (Exosome complex component rrp42 {ECO:0000313|EMBL... [more] |
| A0A2I4DW44 | E-Value: 3.226e-170, PID: 81.82 | (exosome complex component RRP42 {ECO:0000313|RefS... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |