Resource Type:
Polypeptide
Name:
XM_017397281.1
Identifier:
XM_017397281.1-protein
Sequence:
MFSPGTKRAKPRPTTQPPEAASPHTPHHIANRPSTGTPAPWASRLSVLAR
ISPGKKSDKDDEDPNKPVYVGEFPEVVRNEQANLMHKQLHGDAFNSGGID
KATSLAWIICGSKIFIWEYLASAKSRKCVVLDIPSTVSDIRGSSINSRLG
NNWSLCIIIRDSMHKSRSKSLKQYSSVGVILCHLKSRAVVYWANIYSEGT
TSPVTSIDNTEANFSPGQQKTGSNYYNSFIASAATYPSNVCLALACSSSG
DICQFICSPNGIERKVAIHNVLGLSLQGSDINQVNRSKGYPRSLTWHFAN
HSLEETERQFLLLTDHELQCFTVNLNNFYEVSKRWSHEIISPDGDLGIKK
GLAGQKRIWPLDLQLDNSGKIITVLIATFCKDRVTSSSFIEYSLLTMQYK
SGPRISSESTEQTDENVLEKKAPLQVIIPKARVEDEDILFLMRLKVGGKP
SGSAIILSGDGTSTVSHYWRDSTRLYQFDLPYDAGKVLDASVLPSDDGDD
GPWVVLTQKAGLWAIPEKAVLLGGVEPPERSLSRKGSSNEGSAQVERRNF
PFSGNIVPRRATSEAWDAGDKQKAVFTGITHRTAQDEESEALLNVLFNDF
LLSGQVTGAFDKLNSSRAFERDGETSVFTRLSKSIVDTLAKHWTTTRGAE
FVALSVVSNQLIDKQQKHQKFLQFLALSKCHEELCSKQRQSLQFIMEHGE
KLSAVIHLKELQNNISHRSSGLGGTYSTMENKVSGPLWDLIQLVGEKLRR
NTVLLMDRDNAEVFYSKVSELEEVYSCLDRHLEFIITEEMQLPVQFERAC
ELSNACVLLVRTALNYRNEYHMWYPSPEGLTPWYCRTVVRSGLWSIASFL
LQISNESNRLDRPKRLEFYSNLEVLAEVLLEAYSGAITAKIDLKEDNLGL
LNEYWSRRDTLFSSLYRQAKSFVEPSYQDLSEGDEEQGEEIFRQLSSRLL
SIANRHEGYQTLWTICCDLNDSDLLRSYMHESMGPKGGFSYYVFEQLYNN
KQFSKLIKLGEEFPEELLTFLKLHNDLLWLHQLFVHQFSAASETLHKLAF
SQNAGFSPESEVLESHHPVIEPTLADRKRFLNLSKIAALAGKSADYDTKL
KRIEADLKLLKLQEEILKLLPENEETRKIGERLLPSLELIQLCLGSQHRE
LSIWAFDVFAWSTSFFIKSNASLLEECWRNAANEDEWGEIYQTSMSEGWS
EEETHEYLKETILFQASRRCYGPNAATFEGGFEEVLPLRQENTDSFSLKE
TGSVEAILMQHKDFPEAGKLMLTAIMLGTFHADLTVEGSPSPMEG
Sequence Length:
1295
Sequence Checksum:
2f9b70219e04a7a83fbaa2bb63889b07
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017397281.1, derives from mRNA, XM_017397281.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017397281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017397281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A440 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8524826.1}))
HSP 1 Score: 1771.9 bits (4588), Expect = 0.000e+0
Identity = 883/1336 (66.09%), Postives = 1055/1336 (78.97%), Query Frame = 0
Match: A0A5J5A440 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8524826.1}))
HSP 1 Score: 1771.9 bits (4588), Expect = 0.000e+0
Identity = 883/1336 (66.09%), Postives = 1055/1336 (78.97%), Query Frame = 0
Query: 1 MFSPGTKRAK--PRPTTQPPEAASPHTP----------HHIANRPSTGTPAPWASRLSVLARISPGKKSDK-DDEDPNKPVYVGEFPEVVRNEQANLMHKQLHGDAFNSGGIDKATSLAWIICGSKIFIWEYLASAKSRKCVVLDIPSTVSDIRGSSINSRLGNNWSLCIIIRDSMHKSRSKSLKQYSSVGVILCHLKSRAVVYWANIYSEGTTSPVTSI---DNTEANFSPGQQKTGSNY----------------YNSFIASAATYPSNVCLALACSSSGDICQFICSPNGIERKVAIHNVLGLSLQGSDINQVNRSKGYPRSLTWHFANHSLEETERQFLLLTDHELQCFTVNLNNFYEVSKRWSHEIISPDGDLGIKKGLAGQKRIWPLDLQLDNSGKIITVLIATFCKDRVTSSSFIEYSLLTMQYKSGPRISSESTEQTDENVLEKKAPLQVIIPKARVEDEDILFLMRLKVGGKPSGSAIILSGDGTSTVSHYWRDSTRLYQFDLPYDAGKVLDASVLPS-DDGDDGPWVVLTQKAGLWAIPEKAVLLGGVEPPERSLSRKGSSNEGSAQVERRNFPFSGNIVPRRATSEAWDAGDKQKAVFTGITHRTAQDEESEALLNVLFNDFLLSGQVTGAFDKLNSSRAFERDGETSVFTRLSKSIVDTLAKHWTTTRGAEFVALSVVSNQLIDKQQKHQKFLQFLALSKCHEELCSKQRQSLQFIMEHGEKLSAVIHLKELQNNISH-RSSGLGGTYSTMENKVSGPLWDLIQLVGEKLRRNTVLLMDRDNAEVFYSKVSELEEVYSCLDRHLEFIITEEMQLPVQFERACELSNACVLLVRTALNYRNEYHMWYPSPEGLTPWYCRTVVRSGLWSIASFLLQISNE------SNRLDRPKRLEFYSNLEVLAEVLLEAYSGAITAKIDLKEDNLGLLNEYWSRRDTLFSSLYRQAKSFVEPSYQDLSEGDEEQGEEIFRQLSSRLLSIANRHEGYQTLWTICCDLNDSDLLRSYMHESMGPKGGFSYYVFEQLYNNKQFSKLIKLGEEFPEELLTFLKLHNDLLWLHQLFVHQFSAASETLHKLAFSQ-NAGFSPESEVLESHHPVIEPTLADRKRFLNLSKIAALAGKSADYDTKLKRIEADLKLLKLQEEILKLLPENEETRKIGERLLPSLELIQLCLGSQHRELSIWAFDVFAWSTSFFIKSNASLLEECWRNAANEDEWGEIYQTSMSEGWSEEETHEYLKETILFQASRRCYGPNAATFEGGFEEVLPLRQENTDSFSLKETGS-VEAILMQHKDFPEAGKLMLTAIMLGTFHADLTVEGSPSPME 1294
MFSP TK++ R A SP TP + I NRP+TGTPAPWASRLSVLARI P KKS+K DD DP KPVYVGEFP+VVR+EQA ++K GD SGG+DK TS W++CG ++FIW YL+SA SRKC++LDIPS+VS+ S NS G++WSLC+I D H+S +K +++ +S GV+LC+ K+RAV+YW +IYSE T+PVTS+ D + FSPG KT N +NS IASA + ++C+ALAC+S+G++ QF CSP GI+RK + L S QGSD+ Q+ KGYPRSL W F SL ET RQF LLTDHE+QCF V L + VSK WSHEII D DLGI+K LAGQKRIWPLD+Q+DN GK+I++L ATFCKDRV+SSS+ +YSLLTMQYKSG ISSE + E VLEKKAP+QVIIPKARVEDED LF MRL++GGKPSGSAIILSGDGT+TVSHYW++STRLYQFDLPYDAGKV+DASV PS DDG+DG W VLT+KAG+WAIPEKAVLLGGVEPPERSLSRKGSSNEGSAQ ERRN F GN+ PRRA+SEAWDAGD+Q+AVFTGI RTAQDEESEALLN F+ FLLSGQV G+ DKL +S AFERDGET+VF R+SKSIVDTLAKHWTTTRGAE VA++ VS QL+DKQQKHQ+FLQFLALSKCHEELCS+QR+SLQ IMEHGEKL+ +I L+ELQN ISH RS+G+G + E+ +SG LWDLIQLVGE+ RRNT+LLMDRDNAEVFYSKVS+LEEV+ CLD L +I+ EM L V+ +R CELSNACV LV TA+ YRNE+HMWYPSPEGLTPW+C+ VVR GLWSIASF+LQ+ NE S + D R +FYS+LEVLAEVLLEAYSGAITAK++ +E++ GLL+EY +RDTL SLY+Q K FVE YQD SEG EEQ E I R+LSS LLSIANRHEGY+TLW ICCDLNDS+LLR+ M +SMGPKGGFSY+VF+QLY KQFSKLI+LGEEF EEL TFLK H DLLWLH++F HQFS+ASETLH LA SQ + S E ES ++EPTLA+RKR LNLSKIAA+AGK DY+TKLKRIEADLK+LKLQEEIL+LLP+NEE + IG+RLLP +++I+LCL Q+ E+++WAFDVFAW++S F+K + SLLEECW+NAAN+D+WG +Y++S++EGWS+EET + L+ET LF+AS RCYGP A TFEGGF+EVLPLRQEN D +L++ GS VE ILMQH+DFP+AGKLMLTA+MLG D VE PS ME
Sbjct: 1 MFSPATKKSNFSARKDRTLGYADSPITPLVENRRLLYDNSIPNRPNTGTPAPWASRLSVLARIPPVKKSEKGDDIDPIKPVYVGEFPQVVRDEQAIFLNKHFPGDWCISGGMDKGTSFVWLVCGKRLFIWSYLSSAASRKCIILDIPSSVSENGDISQNSYHGSSWSLCVIQWDITHRSTNKVMQKCNSAGVVLCNQKTRAVIYWPDIYSEDGTTPVTSLTCSDESGVTFSPGDGKTTPNKQWQRSSQGSSSTVSISFNSLIASAISVTEHICIALACNSNGELWQFHCSPTGIQRKRIYQDFLSASSQGSDVGQLI-GKGYPRSLCWRFPQLSLGETSRQFFLLTDHEIQCFDVKLIPDFNVSKLWSHEIIGTDSDLGIRKDLAGQKRIWPLDVQVDNHGKVISILFATFCKDRVSSSSYTQYSLLTMQYKSGVNISSECIQPKQERVLEKKAPIQVIIPKARVEDEDFLFSMRLRLGGKPSGSAIILSGDGTATVSHYWKNSTRLYQFDLPYDAGKVIDASVFPSSDDGEDGAWAVLTEKAGVWAIPEKAVLLGGVEPPERSLSRKGSSNEGSAQEERRNVSFVGNVPPRRASSEAWDAGDRQRAVFTGIARRTAQDEESEALLNYQFHHFLLSGQVDGSLDKLRNSGAFERDGETNVFARISKSIVDTLAKHWTTTRGAEIVAMTAVSTQLMDKQQKHQRFLQFLALSKCHEELCSRQRKSLQIIMEHGEKLAGMIQLRELQNMISHNRSTGVGSPCQSSESVISGSLWDLIQLVGERTRRNTILLMDRDNAEVFYSKVSDLEEVFYCLDGQLACLISGEMPLVVKIQRVCELSNACVTLVHTAMQYRNEHHMWYPSPEGLTPWFCQPVVRIGLWSIASFMLQLLNEIYSPDMSAKSDFYSRSDFYSHLEVLAEVLLEAYSGAITAKVE-REEHKGLLDEYCYKRDTLLDSLYQQVKGFVEAGYQDSSEGTEEQIEVILRKLSSNLLSIANRHEGYRTLWNICCDLNDSELLRNLMRDSMGPKGGFSYFVFKQLYEKKQFSKLIRLGEEFQEELATFLKQHRDLLWLHEVFRHQFSSASETLHVLALSQDDRSTSAAEEGTESCDTLLEPTLAERKRLLNLSKIAAMAGKHDDYETKLKRIEADLKILKLQEEILELLPDNEEKQNIGQRLLPPVDIIKLCLEGQNPEIALWAFDVFAWTSSSFLKCHRSLLEECWKNAANQDDWGRLYESSIAEGWSDEETLQILRETTLFKASSRCYGPEAETFEGGFDEVLPLRQENLDLPTLRDMGSCVETILMQHRDFPDAGKLMLTAVMLGIAQVDTRVEEDPSLME 1334
BLAST of XM_017397281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BVC6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA72900.1}))
HSP 1 Score: 1760.35 bits (4558), Expect = 0.000e+0
Identity = 877/1331 (65.89%), Postives = 1049/1331 (78.81%), Query Frame = 0
Match: A0A5B7BVC6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA72900.1}))
HSP 1 Score: 1760.35 bits (4558), Expect = 0.000e+0
Identity = 877/1331 (65.89%), Postives = 1049/1331 (78.81%), Query Frame = 0
Query: 1 MFSPGTKRAK--PRPTTQPPEAASPHTP----------HHIANRPSTGTPAPWASRLSVLARISPGKKSDK-DDEDPNKPVYVGEFPEVVRNEQANLMHKQLHGDAFNSGGIDKATSLAWIICGSKIFIWEYLASAKSRKCVVLDIPSTVSDIRGSSINSRLGNNWSLCIIIRDSMHKSRSKSLKQYSSVGVILCHLKSRAVVYWANIYSEGTTSPVTSIDNTE---ANFSPGQQKT----------------GSNYYNSFIASAATYPSNVCLALACSSSGDICQFICSPNGIERKVAIHNVLGLSLQGSDINQVNRSKGYPRSLTWHFANHSLEETERQFLLLTDHELQCFTVNLNNFYEVSKRWSHEIISPDGDLGIKKGLAGQKRIWPLDLQLDNSGKIITVLIATFCKDRVTSSSFIEYSLLTMQYKSGPRISSESTEQTDENVLEKKAPLQVIIPKARVEDEDILFLMRLKVGGKPSGSAIILSGDGTSTVSHYWRDSTRLYQFDLPYDAGKVLDASVLPS-DDGDDGPWVVLTQKAGLWAIPEKAVLLGGVEPPERSLSRKGSSNEGSAQVERRNFPFSGNIVPRRATSEAWDAGDKQKAVFTGITHRTAQDEESEALLNVLFNDFLLSGQVTGAFDKLNSSRAFERDGETSVFTRLSKSIVDTLAKHWTTTRGAEFVALSVVSNQLIDKQQKHQKFLQFLALSKCHEELCSKQRQSLQFIMEHGEKLSAVIHLKELQNNIS-HRSSGLGGTYSTMENKVSGPLWDLIQLVGEKLRRNTVLLMDRDNAEVFYSKVSELEEVYSCLDRHLEFIITEEMQLPVQFERACELSNACVLLVRTALNYRNEYHMWYPSPEGLTPWYCRTVVRSGLWSIASFLLQISNESNRLDRPKRLEFYSNLEVLAEVLLEAYSGAITAKIDLKEDNLGLLNEYWSRRDTLFSSLYRQAKSFVEPSYQDLSEGDEEQGEEIFRQLSSRLLSIANRHEGYQTLWTICCDLNDSDLLRSYMHESMGPKGGFSYYVFEQLYNNKQFSKLIKLGEEFPEELLTFLKLHNDLLWLHQLFVHQFSAASETLHKLAFSQ-NAGFSPESEVLESHHPVIEPTLADRKRFLNLSKIAAL-AGKSADYDTKLKRIEADLKLLKLQEEILKLLPENEETRKIGERLLPSLELIQLCLGSQHRELSIWAFDVFAWSTSFFIKSNASLLEECWRNAANEDEWGEIYQTSMSEGWSEEETHEYLKETILFQASRRCYGPNAATFEGGFEEVLPLRQENTDSFSLKETG-SVEAILMQHKDFPEAGKLMLTAIMLGTFHADLTVEGSPSPME 1294
MFSP TK++ R SP TP + I NRPSTGTPAPWASRLSVLARI P KKS+K DD DP KPVYVGEFP+VVR+EQA ++K++ GD SGG+D+ TS AWI+CGS++FIW YL+ SRKCV+LDIPS VS+ S NS GN+WSL ++ +S H+S +K +++ S GV+LC K+RAV+YW +IYSE T+PV S+ +T+ FSPG KT GS +NS IASA + +VC+ALACSS+G++ Q CSP GI+RK + L QGSD ++ SKGYPRSL W F SLEE+ RQF LLTDHE+QCF + L + VSK WSH+II D DLGIKK LAGQKRIWPLD+Q+DN GK I++L+ATFCKDRV+SSS+ +YS+LTMQYKSG ISS+ E E VLEKKAP+QVIIPKARVE+ED LF MRL++GGKPSGSAIILSGDGT+TVSHYW++STRLYQFDLPYDAGKV+DASV PS DDGDDG W VLT+KAG+WAIPEKAVLLGGVEPPERSLSRKGSSNEGSAQ ERRN F GNI PRRA+SEAWDAGD+Q+AVFTGI RTAQDEESEALL +F+ FLLSGQV G+ DKL +S AFERDGET+VF R+SKSIVDTLAKHWTTTRGAE VA++VVS QL+DKQQKHQ+FLQFLALSKCHEELCS+QRQSLQ IMEHGEKL+ +I LKELQN IS +RS+G+G + E+ SG LWDLIQLVGE+ RRNT+LLMDRDNAEVFYSKVS+LEEV+ CLD ++ITE+M VQ +RACELSN CV LV TA++YRNE+H+WYPSPEGLTPW+C+ VVR+GLWSIASF+LQ+ NE++ LD + +F+S+LEVLAEVLLEAYSGAITAK++ E++ GLL+EY ++RD L SLY+ K FVE +QD EG EEQ E I R+LSS LLSIANRHEGYQTLW I CDLND++LLR+ M +SMGPKGGFS++VF+QLY KQFSKLI+LGEEF EEL TFLK H DLLWLH++F+HQFS+AS+TLH LA SQ + S E ES V+EPTLA+RKR LNLSKIAA+ AGK DY+TKLKRIEADLK+LKLQEEILKLLP+NEE + IG+RLLP +++I+LCL Q ELS+WAFDVFAW++S F+K + SLL+ECW+NAANED WG + Q+ +EGWS+EET + L+ET LF+AS RCYGP A TFEGGF+EVLPLRQEN D +LK+ G SVEAILMQHKDFP+AG+LMLTA+MLG D VE PS M+
Sbjct: 1 MFSPATKKSNFSARKDRTIGHTDSPITPLVENRRSLHDNSIPNRPSTGTPAPWASRLSVLARIPPVKKSEKGDDIDPIKPVYVGEFPQVVRDEQAIFLYKRVPGDRCISGGMDRGTSFAWIVCGSRLFIWSYLSPTASRKCVILDIPSIVSENGDISQNSYHGNSWSLYVVNWESTHRSTNKVMQKCDSAGVVLCDQKTRAVIYWPDIYSEDGTTPVMSLASTDELGVTFSPGDGKTTPKKQWQRSRLGSSSTGSISFNSLIASAISDTGHVCIALACSSNGELWQLHCSPTGIQRKRIYQDFLSAPSQGSDGGELIGSKGYPRSLCWRFPQLSLEESSRQFFLLTDHEIQCFAIKLIPDFNVSKLWSHKIIGTDSDLGIKKDLAGQKRIWPLDVQVDNHGKEISILVATFCKDRVSSSSYTQYSILTMQYKSGVNISSKCIEPIQERVLEKKAPIQVIIPKARVEEEDFLFSMRLRLGGKPSGSAIILSGDGTATVSHYWKNSTRLYQFDLPYDAGKVIDASVFPSSDDGDDGAWAVLTEKAGVWAIPEKAVLLGGVEPPERSLSRKGSSNEGSAQEERRNVSFVGNIAPRRASSEAWDAGDRQRAVFTGIARRTAQDEESEALLKNIFHHFLLSGQVDGSLDKLRNSGAFERDGETNVFARISKSIVDTLAKHWTTTRGAEIVAMAVVSTQLMDKQQKHQRFLQFLALSKCHEELCSRQRQSLQIIMEHGEKLAGMIQLKELQNMISQNRSTGVGSPCQSSESVTSGSLWDLIQLVGERARRNTILLMDRDNAEVFYSKVSDLEEVFYCLDGQRNYLITEDMPFVVQIQRACELSNTCVTLVHTAMHYRNEHHIWYPSPEGLTPWFCQPVVRNGLWSIASFMLQLLNETSCLDMSVKSDFHSHLEVLAEVLLEAYSGAITAKVERGEEHKGLLDEYCNKRDALLDSLYQLVKGFVEARFQDSGEGTEEQIEVILRKLSSNLLSIANRHEGYQTLWNIACDLNDAELLRNLMRDSMGPKGGFSFFVFKQLYEKKQFSKLIRLGEEFQEELATFLKQHRDLLWLHEVFLHQFSSASQTLHVLALSQDDRSTSAAEEGTESCGTVLEPTLAERKRLLNLSKIAAMAAGKHDDYETKLKRIEADLKILKLQEEILKLLPDNEEKQSIGQRLLPPVDIIKLCLEGQKPELSLWAFDVFAWTSSSFLKCHRSLLDECWKNAANEDNWGRLNQSYTAEGWSDEETLQVLRETALFKASSRCYGPEAETFEGGFDEVLPLRQENLDLPTLKDMGCSVEAILMQHKDFPDAGRLMLTAVMLGVAQVDTGVEEDPSLMD 1331
BLAST of XM_017397281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QT67 ((Nuclear pore complex protein {ECO:0000313|EMBL:PSS14328.1}))
HSP 1 Score: 1731.07 bits (4482), Expect = 0.000e+0
Identity = 860/1332 (64.56%), Postives = 1048/1332 (78.68%), Query Frame = 0
Match: A0A2R6QT67 ((Nuclear pore complex protein {ECO:0000313|EMBL:PSS14328.1}))
HSP 1 Score: 1731.07 bits (4482), Expect = 0.000e+0
Identity = 860/1332 (64.56%), Postives = 1048/1332 (78.68%), Query Frame = 0
Query: 1 MFSPGTKRA-----KPRPTTQPPEAASPHTP----------HHIANRPSTGTPAPWASRLSVLARISPGKKSDK-DDEDPNKPVYVGEFPEVVRNEQANLMHKQLHGDAFNSGGIDKATSLAWIICGSKIFIWEYLASAKSRKCVVLDIPSTVSDIRGSSINSRLGNNWSLCIIIRDSMHKSRSKSLKQYSSVGVILCHLKSRAVVYWANIYSEGTTSPVTSIDNTE----------ANFSPGQQK---------TGSNYYNSFIASAATYPSNVCLALACSSSGDICQFICSPNGIERKVAIHNVLGLSLQGSDINQVNRSKGYPRSLTWHFANHSLEETERQFLLLTDHELQCFTVNLNNFYEVSKRWSHEIISPDGDLGIKKGLAGQKRIWPLDLQLDNSGKIITVLIATFCKDRVTSSSFIEYSLLTMQYKSGPRISSESTEQTDENVLEKKAPLQVIIPKARVEDEDILFLMRLKVGGKPSGSAIILSGDGTSTVSHYWRDSTRLYQFDLPYDAGKVLDASVLPSDDGDDGPWVVLTQKAGLWAIPEKAVLLGGVEPPERSLSRKGSSNEGSAQVERRNFPFSGNIVPRRATSEAWDAGDKQKAVFTGITHRTAQDEESEALLNVLFNDFLLSGQVTGAFDKLNSSRAFERDGETSVFTRLSKSIVDTLAKHWTTTRGAEFVALSVVSNQLIDKQQKHQKFLQFLALSKCHEELCSKQRQSLQFIMEHGEKLSAVIHLKELQNNIS-HRSSGLGGTYSTMENKVSGPLWDLIQLVGEKLRRNTVLLMDRDNAEVFYSKVSELEEVYSCLDRHLEFIITEEMQLPVQFERACELSNACVLLVRTALNYRNEYHMWYPSPEGLTPWYCRTVVRSGLWSIASFLLQISNESNRLDRPKRLEFYSNLEVLAEVLLEAYSGAITAKIDLKEDNLGLLNEYWSRRDTLFSSLYRQAKSFVEPSYQDLSEGDEEQGEEIFRQLSSRLLSIANRHEGYQTLWTICCDLNDSDLLRSYMHESMGPKGGFSYYVFEQLYNNKQFSKLIKLGEEFPEELLTFLKLHNDLLWLHQLFVHQFSAASETLHKLAFSQ-NAGFSPESEVLESHHPVIEPTLADRKRFLNLSKIAALAGKSADYDTKLKRIEADLKLLKLQEEILKLLPENEETRKIGERLLPSLELIQLCLGSQHRELSIWAFDVFAWSTSFFIKSNASLLEECWRNAANEDEWGEIYQTSMSEGWSEEETHEYLKETILFQASRRCYGPNAATFEGGFEEVLPLRQENTDSFSLKETG-SVEAILMQHKDFPEAGKLMLTAIMLGTFHADLTVEGSPSPME 1294
MFSP T+++ K R PP+ SP TP + + NRPSTGTPAPWASRLSVLARISP KKS+K +D DP +PV+VGEFP++VR+EQA L+ K++ GD +GG++K TSLAWII G K+F+W YL+ A SR CVVL++PS++ + S NS GN+W L I+ DS +++ K ++Q S G++LC+ ++RA+VYW +IYSEG +SPVTS+ + E +P +Q+ TGS NS I SA + C+ALAC +G++ F C+P GI RK ++L S QG+D Q+ SKGYPRSL W F++ +L+ET RQF LLTDHE+QCF++ L+ V K WSHEII DGD GI+K LAGQKRIWPLDLQ+DN GK+IT+LIATFCKDR++SSS+IEYSLLTMQY+SG IS ES E VLEKKAP+QVIIPKARVE+ED LF MRL+VGGKPSGS I+LSGDGT+TVSHYWR STRLYQFDLPYDAGKVLDASV PS D +DG W VLT+KAG+WAIPEKAVLLGGVEPPERSLSRKGSSNE SAQ ERRN +GNI PRRA SEAWDAGD+Q+AVFTGI RTAQDEESEALLN LF+DFLLSGQV + DKL S+ AFERDGET+VF R+SKSIVDTLAKHWTTTRGAE VAL+VVS QL+DKQQKHQKFLQFLALSKCHEELCS+QRQSLQ IMEHGEKL+A+I L+ELQN IS +RS+G+G YS+ E+++SG LWDLIQLVGE+ RRNTVLLMDRDNAEVFYSKVS+LEE++ CLD+ L ++I EM L VQ +R CELS ACV LVRTA++YRNEYH+WYP PE +TPWY + VRSGLWS+ASF+LQ+ E + + + ++ +F+SNLEVLAEVLLEAYSGAITAK++ E++ GLL+E+W+RRD L S+Y+ KS S++D SEG EEQ + I R+LSS LLSIA RHEGYQTLW ICCDLNDS+LLR+ MHESMGP GGFSY+VF+QLY+ KQFSKL++LGEEFP EL TFLK H DLLWLH++F+HQFS+AS+TLH LA SQ + + +E ES +EPTLA+RKR L+LSKIAA+AG++AD D LKRIEADLK+LKLQEEIL+LLPE+EE ++IG RLLP + LI+LCL +Q+RELS+ AFDVFAW++S F+K N LLEECWRN AN+D WG+IY+TS+SEGWS+E + L+ET+LFQAS RCYGP A TFEGGFE+VLPLRQEN + +LK++G SVEAILMQHKD+P+AGKLMLTAIM+ E PS ME
Sbjct: 1 MFSPATRKSNFSARKDRSLHAPPD--SPLTPLAENRRPLHENSVPNRPSTGTPAPWASRLSVLARISPVKKSEKVEDLDPVQPVFVGEFPQLVRDEQAILLQKRVPGDFCLAGGMEKETSLAWIIFGDKLFVWSYLSPAASRNCVVLNLPSSILEDGESGRNSCPGNSWMLDIVNWDSEYRNTDKVVQQCKSAGIVLCNQRTRALVYWPDIYSEGRSSPVTSVASIEELEMSYLLADGKTTPNRQQHHSRPVSSSTGSCLLNSLIGSAIPDDRHTCVALACGCNGELWLFYCTPTGIHRKKIYQDILSSSYQGNDSGQLLGSKGYPRSLIWRFSHCNLKETNRQFFLLTDHEIQCFSITLSPDITVVKVWSHEIIGADGDSGIQKNLAGQKRIWPLDLQVDNQGKVITILIATFCKDRLSSSSYIEYSLLTMQYRSGVNISPESIVPVHERVLEKKAPIQVIIPKARVEEEDFLFSMRLRVGGKPSGSVIVLSGDGTATVSHYWRSSTRLYQFDLPYDAGKVLDASVFPSSDDEDGAWAVLTEKAGVWAIPEKAVLLGGVEPPERSLSRKGSSNEISAQEERRNLLVAGNIAPRRAGSEAWDAGDRQRAVFTGIARRTAQDEESEALLNHLFHDFLLSGQVDVSLDKLRSAGAFERDGETNVFARVSKSIVDTLAKHWTTTRGAEIVALAVVSTQLMDKQQKHQKFLQFLALSKCHEELCSRQRQSLQTIMEHGEKLAAMIQLRELQNLISQNRSTGVGSPYSSAESEISGSLWDLIQLVGERARRNTVLLMDRDNAEVFYSKVSDLEELFYCLDKQLAYLIGTEMPLVVQIQRTCELSTACVTLVRTAIHYRNEYHLWYPPPECVTPWYGQPAVRSGLWSVASFMLQLLTEISHIHKSRKSDFHSNLEVLAEVLLEAYSGAITAKLERGEEHKGLLDEFWNRRDALLDSIYQLVKS----SFKDTSEGTEEQSDGILRELSSNLLSIAKRHEGYQTLWNICCDLNDSELLRNLMHESMGPNGGFSYFVFKQLYDTKQFSKLMRLGEEFPAELATFLKHHRDLLWLHEVFLHQFSSASDTLHVLALSQDDNSIAAAAEGNESSGIKMEPTLAERKRLLHLSKIAAVAGRNADCDKTLKRIEADLKILKLQEEILQLLPEDEEKQRIGNRLLPPVYLIELCLKNQNRELSLRAFDVFAWTSSSFLKCNRGLLEECWRNVANQDNWGKIYETSISEGWSDEVRFQILRETMLFQASNRCYGPEAETFEGGFEDVLPLRQENLEFLTLKDSGSSVEAILMQHKDYPDAGKLMLTAIMMEMPQVGTGTEADPSLME 1326
BLAST of XM_017397281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FMM0 ((Nucleoporin, Nup133/Nup155-like protein {ECO:0000313|EMBL:GFY99187.1}))
HSP 1 Score: 1714.12 bits (4438), Expect = 0.000e+0
Identity = 854/1332 (64.11%), Postives = 1042/1332 (78.23%), Query Frame = 0
Match: A0A7J0FMM0 ((Nucleoporin, Nup133/Nup155-like protein {ECO:0000313|EMBL:GFY99187.1}))
HSP 1 Score: 1714.12 bits (4438), Expect = 0.000e+0
Identity = 854/1332 (64.11%), Postives = 1042/1332 (78.23%), Query Frame = 0
Query: 1 MFSPGTKRA-----KPRPTTQPPEAASPHTP----------HHIANRPSTGTPAPWASRLSVLARISPGKKSDK-DDEDPNKPVYVGEFPEVVRNEQANLMHKQLHGDAFNSGGIDKATSLAWIICGSKIFIWEYLASAKSRKCVVLDIPSTVSDIRGSSINSRLGNNWSLCIIIRDSMHKSRSKSLKQYSSVGVILCHLKSRAVVYWANIYSEGTTSPVTSIDNTE----------ANFSPGQQK---------TGSNYYNSFIASAATYPSNVCLALACSSSGDICQFICSPNGIERKVAIHNVLGLSLQGSDINQVNRSKGYPRSLTWHFANHSLEETERQFLLLTDHELQCFTVNLNNFYEVSKRWSHEIISPDGDLGIKKGLAGQKRIWPLDLQLDNSGKIITVLIATFCKDRVTSSSFIEYSLLTMQYKSGPRISSESTEQTDENVLEKKAPLQVIIPKARVEDEDILFLMRLKVGGKPSGSAIILSGDGTSTVSHYWRDSTRLYQFDLPYDAGKVLDASVLPSDDGDDGPWVVLTQKAGLWAIPEKAVLLGGVEPPERSLSRKGSSNEGSAQVERRNFPFSGNIVPRRATSEAWDAGDKQKAVFTGITHRTAQDEESEALLNVLFNDFLLSGQVTGAFDKLNSSRAFERDGETSVFTRLSKSIVDTLAKHWTTTRGAEFVALSVVSNQLIDKQQKHQKFLQFLALSKCHEELCSKQRQSLQFIMEHGEKLSAVIHLKELQNNIS-HRSSGLGGTYSTMENKVSGPLWDLIQLVGEKLRRNTVLLMDRDNAEVFYSKVSELEEVYSCLDRHLEFIITEEMQLPVQFERACELSNACVLLVRTALNYRNEYHMWYPSPEGLTPWYCRTVVRSGLWSIASFLLQISNESNRLDRPKRLEFYSNLEVLAEVLLEAYSGAITAKIDLKEDNLGLLNEYWSRRDTLFSSLYRQAKSFVEPSYQDLSEGDEEQGEEIFRQLSSRLLSIANRHEGYQTLWTICCDLNDSDLLRSYMHESMGPKGGFSYYVFEQLYNNKQFSKLIKLGEEFPEELLTFLKLHNDLLWLHQLFVHQFSAASETLHKLAFSQ-NAGFSPESEVLESHHPVIEPTLADRKRFLNLSKIAALAGKSADYDTKLKRIEADLKLLKLQEEILKLLPENEETRKIGERLLPSLELIQLCLGSQHRELSIWAFDVFAWSTSFFIKSNASLLEECWRNAANEDEWGEIYQTSMSEGWSEEETHEYLKETILFQASRRCYGPNAATFEGGFEEVLPLRQENTDSFSLKETG-SVEAILMQHKDFPEAGKLMLTAIMLGTFHADLTVEGSPSPME 1294
MFSP T+++ K R PP+ SP TP + + NRPSTGTPAPWASRLSVLAR KS+K +D DP +PV+VGEFP++VR+EQA L+ K++ GD +GG++K TSLAWII G K+F+W YL+ A SR CVVL++PS++ + S NS GN+W L I+ DS +++ K ++Q S G++LC+ ++RA+VYW +IYSEG +SPVTS+ + E +P +Q+ TGS NS I SA + C+ALAC +G++ F C+P GI RK ++L S QG+D Q+ SKGYPRSL W F++ +L+ET RQF LLTDHE+QCF++ L+ V K WSHEII DGD GI+K LAGQKRIWPLDLQ+DN GK+IT+LIATFCKDR++SSS+IEYSLLTMQY+SG IS ES E LEKKAP+QVIIPKARVE+ED LF MRL+VGGKPSGS I+LSGDGT+TVSHYWR STRLYQFDLPYDAGKVLDASV PS D +DG W VLT+KAG+WAIPEKAVLLGGVEPPERSLSRKGSSNE SAQ ERRN +GNI PRRA SEAWDAGD+Q+AVFTGI RTAQDEESEALLN LF+DFLLSGQV + DKL S+ AFERDGET+VF R+SKSIVDTLAKHWTTTRGAE VAL+VVS QL+DKQQKHQKFLQFLALSKCHEELCS+QRQSLQ IMEHGEKL+A+I L+ELQN IS +RS+G+G YS+ E+++SG LWDLIQLVGE+ RRNTVLLMD+DNAEVFYSKVS+LEE++ CLD L ++I EM L VQ +R CELS ACV LVRTA++YRNEYH+WYP PE +TPWY + VVRSGLWS+ASF+LQ+ E + + + ++ +F+SNLEVLAEVLLEAYSGAITAK++ E++ GLL+E+W+RRD L S+Y+ KS S++D SEG EEQ + I R+LSS LLSIA RHEGYQTLW ICCDLNDS+LLR+ MHESMGP GGFSY+VF+QLY+ KQFSKL++LGEEFP EL TFLK H DLLWLH++F+HQFS+AS+TLH LA SQ + + +E ES +EPTLA+RKR L+LSKIAA+AG++AD D LKRIEADLK+LKLQEEIL+ LPE+EE ++IG RLLP + LI+LCL +Q+RELS+ AFDVFAW++S F+K N LLEECWRN AN+D WG+IY+TS+SEGWS+E + L+ET+LFQAS RCYGP A TFEGGFE+VLPLRQEN + +LK++G SVEAILMQHKD+P+AGKLMLTAIM+ E PS ME
Sbjct: 1 MFSPATRKSNFSARKDRSLHAPPD--SPLTPLAENRRPLHENSVPNRPSTGTPAPWASRLSVLAR-----KSEKVEDLDPVQPVFVGEFPQLVRDEQAILLQKRVPGDFCLAGGMEKETSLAWIIFGDKLFVWSYLSPAASRNCVVLNLPSSILEDGESGRNSCPGNSWMLYIVNWDSEYRNTDKVVQQCKSAGIVLCNQRTRALVYWPDIYSEGRSSPVTSVASIEELEMSYLLADGKTTPNRQQHHSRPVSSSTGSCLLNSLIGSAIPDDRHTCVALACGCNGELWLFYCNPTGIHRKKIYQDILSSSYQGNDSGQLLGSKGYPRSLIWRFSHCNLKETNRQFFLLTDHEIQCFSITLSPDITVVKVWSHEIIGADGDSGIQKNLAGQKRIWPLDLQVDNQGKVITILIATFCKDRLSSSSYIEYSLLTMQYRSGVNISPESIVPVRERALEKKAPIQVIIPKARVEEEDFLFSMRLRVGGKPSGSVIVLSGDGTATVSHYWRSSTRLYQFDLPYDAGKVLDASVFPSSDDEDGAWAVLTEKAGVWAIPEKAVLLGGVEPPERSLSRKGSSNEISAQEERRNLLVAGNIAPRRAGSEAWDAGDRQRAVFTGIARRTAQDEESEALLNHLFHDFLLSGQVDVSLDKLQSAGAFERDGETNVFARVSKSIVDTLAKHWTTTRGAEIVALAVVSTQLMDKQQKHQKFLQFLALSKCHEELCSRQRQSLQTIMEHGEKLAAMIQLRELQNLISQNRSTGVGSPYSSAESEISGSLWDLIQLVGERARRNTVLLMDKDNAEVFYSKVSDLEELFYCLDTQLAYLIGTEMPLVVQIQRTCELSTACVTLVRTAIHYRNEYHLWYPPPECVTPWYSQPVVRSGLWSVASFMLQLLTEISHIHKSRKSDFHSNLEVLAEVLLEAYSGAITAKLERGEEHRGLLDEFWNRRDALLDSIYQLVKS----SFKDTSEGTEEQSDGILRELSSNLLSIAKRHEGYQTLWNICCDLNDSELLRNLMHESMGPNGGFSYFVFKQLYDTKQFSKLMRLGEEFPAELATFLKHHRDLLWLHEVFLHQFSSASDTLHVLALSQDDNSIAAAAEGNESSGIKMEPTLAERKRLLHLSKIAAVAGRNADCDKTLKRIEADLKILKLQEEILQFLPEDEEKQRIGNRLLPPVYLIELCLKNQNRELSLRAFDVFAWTSSSFLKCNRGLLEECWRNVANQDNWGKIYETSISEGWSDEVRFQILRETMLFQASNRCYGPEAETFEGGFEDVLPLRQENLEFLTLKDSGSSVEAILMQHKDYPDAGKLMLTAIMMEMPQVGTGTEACPSLME 1321
BLAST of XM_017397281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6S7C9 ((nuclear pore complex protein NUP133-like {ECO:0000313|RefSeq:XP_027061322.1}))
HSP 1 Score: 1678.3 bits (4345), Expect = 0.000e+0
Identity = 827/1334 (61.99%), Postives = 1027/1334 (76.99%), Query Frame = 0
Match: A0A6P6S7C9 ((nuclear pore complex protein NUP133-like {ECO:0000313|RefSeq:XP_027061322.1}))
HSP 1 Score: 1678.3 bits (4345), Expect = 0.000e+0
Identity = 827/1334 (61.99%), Postives = 1027/1334 (76.99%), Query Frame = 0
Query: 1 MFSPGTKR------AKPRPTTQPPEA------ASPHTP----HHIANRPSTGTPAPWASRLSVLARISPGKKSDK-DDEDPNKPVYVGEFPEVVRNEQ-ANLMHKQLHGDAFNSGGIDKATSLAWIICGSKIFIWEYLASAKSRKCVVLDIPSTVSDIRGSSINSRLGNNWSLCIIIRDSMHKSRSKSLKQYSSVGVILCHLKSRAVVYWANIYSEGTTSPVTSIDNTE------------ANFSPGQQKT-------GSNYYNSFIASAATYPSNVCLALACSSSGDICQFICSPNGIERKVAIHNVLGLSLQGSDINQVNRSKGYPRSLTWHFANHSLEETERQFLLLTDHELQCFTVNLNNFYEVSKRWSHEIISPDGDLGIKKGLAGQKRIWPLDLQLDNSGKIITVLIATFCKDRVTSSSFIEYSLLTMQYKSGPRISSESTEQTDENVLEKKAPLQVIIPKARVEDEDILFLMRLKVGGKPSGSAIILSGDGTSTVSHYWRDSTRLYQFDLPYDAGKVLDASVLPS-DDGDDGPWVVLTQKAGLWAIPEKAVLLGGVEPPERSLSRKGSSNEGSAQVERRNFPFSGNIVPRRATSEAWDAGDKQKAVFTGITHRTAQDEESEALLNVLFNDFLLSGQVTGAFDKLNSSRAFERDGETSVFTRLSKSIVDTLAKHWTTTRGAEFVALSVVSNQLIDKQQKHQKFLQFLALSKCHEELCSKQRQSLQFIMEHGEKLSAVIHLKELQNNISH-RSSGLGGTYSTMENKVSGPLWDLIQLVGEKLRRNTVLLMDRDNAEVFYSKVSELEEVYSCLDRHLEFIITEEMQLPVQFERACELSNACVLLVRTALNYRNEYHMWYPSPEGLTPWYCRTVVRSGLWSIASFLLQISNESNRLDRPKRLEFYSNLEVLAEVLLEAYSGAITAKIDLKEDNLGLLNEYWSRRDTLFSSLYRQAKSFVEPSYQDLSEGDEEQGEEIFRQLSSRLLSIANRHEGYQTLWTICCDLNDSDLLRSYMHESMGPKGGFSYYVFEQLYNNKQFSKLIKLGEEFPEELLTFLKLHNDLLWLHQLFVHQFSAASETLHKLAFSQNAGFSPESEVLESHHPVIEPTLADRKRFLNLSKIAALAGKSADYDTKLKRIEADLKLLKLQEEILKLLPENEETRKIGERLLPSLELIQLCLGSQHRELSIWAFDVFAWSTSFFIKSNASLLEECWRNAANEDEWGEIYQTSMSEGWSEEETHEYLKETILFQASRRCYGPNAATFEGGFEEVLPLRQENTDSFSLKE-TGSVEAILMQHKDFPEAGKLMLTAIMLGTFHADLTVEGSPSPME 1294
MFSPG ++ A R E ASP TP + I NRP+TGTPAPWASRLSVLARI P K+++K DD D +PVYVGEFP VR+EQ A L+ KQ G+ SGG+DK TSLAW+IC ++F+W Y + SR CVVLD+PS+ + R SS N+ N W +CI+ D ++++ K + Q +S G+I+C+ +SR +VYW IYSE ++PV S + E AN++ +Q+T G + NS IA+ ++VC++LACSS+GD+ QF CSP IERK ++LG + G D + + SKGYPRSLTW N S ET+RQFLLLTD E+QCF V L Y VSK WSHEI+ DGDLGI+K LAGQKRIWPLDLQ+DN GK+IT+LIA FCKDR+TSSS+ EYSLLTMQY+SG IS+E+ + T E VLEKKAP+QVIIPKARVEDE+ LF MRLK+GGKP+GS IILSGDGT+TVSHYWR+STRLYQFDLPYDAGKV DA+V PS DDG+DG W VLT+KAG+WAIPE+A+L+GGVEPPERSLSRKGSSNE S+Q ER+N FSGNI PRRA+SEAWDA D+ +A TGI HR AQDEESEALLN LFNDFLLSGQV G+ DKL S AFERDGET+VFTR+SKSIVDTLAKHWTTTRG E VALS+VS QLI+KQQKHQK LQFLALSKCHEELC+KQRQSLQ I+EHGEKL+ ++ L+ELQN I ++G+ +YS E + SG LWDLIQLVGE+ RR TVLLMDR+NAEVFYSKVS++E+++ CL++ L+ +I E+M VQF+RACE+SNACV +++TA++YR+E+H+WYPSP+GLTPWYC+TVVRSG+WSIASF+LQ+ NE+ RLD K+L+FYS+LEVL+EVLL+AYSGAITAK + E+ GLL+EYW RRD L SL++Q K F + QD G E Q +E+ R+LSS+LL IA RHEGYQTLW+ICCDLNDS+LL++ MHESMGP+GGFS +VF+QLY++KQ+S+L++LGEEF EEL FLK H DL WLH++F++QF+AASETLH + SQ +E TLA+RK FLNLSKIAA+AG++ D K+KRIEADL +LKLQEEIL LLP+++E IG RLLP ++LI+LCL +Q+R L++ AFDVFAW++ FF+K N+SLLEECWRNAAN+D+W IYQ S++EGWS+EET L+ET+LFQAS CYGP A TF+GGF+EVLPLRQEN + +K+ + SVEAILMQHKDFP+AGKLMLTAIMLG+ HA + S PME
Sbjct: 1 MFSPGRRKSSYGSAAAARKDQNATEKSNDSSLASPKTPLQDSNVIPNRPATGTPAPWASRLSVLARIPPVKRNEKGDDVDLVQPVYVGEFPLAVRDEQQAALVQKQYPGEMSISGGMDKETSLAWVICRDRLFVWNYFSPTASRNCVVLDLPSSTFETRDSSRNAFNSNTWLVCILNWDCLNRNSDKLISQSNSAGIIVCNRRSRTLVYWPEIYSESRSAPVLSSASVEELEVLLLPGDGKANYNKQRQRTKQGSSITGLSSLNSLIATPVLGANHVCVSLACSSNGDLWQFFCSPFAIERKKIFQDMLGTASSGGDSSHLVGSKGYPRSLTWQLFN-SFSETKRQFLLLTDREIQCFCVKLTPDYNVSKLWSHEIVGTDGDLGIQKDLAGQKRIWPLDLQIDNDGKVITILIAIFCKDRITSSSYTEYSLLTMQYRSGLSISTENVKPTSERVLEKKAPIQVIIPKARVEDEEFLFSMRLKIGGKPAGSVIILSGDGTATVSHYWRNSTRLYQFDLPYDAGKVFDAAVFPSSDDGEDGAWAVLTEKAGIWAIPERAILIGGVEPPERSLSRKGSSNERSSQEERKNISFSGNIPPRRASSEAWDAVDRHRAPLTGIAHRNAQDEESEALLNQLFNDFLLSGQVEGSVDKLKYSGAFERDGETNVFTRMSKSIVDTLAKHWTTTRGVEIVALSIVSTQLIEKQQKHQKHLQFLALSKCHEELCTKQRQSLQIILEHGEKLAGMLQLRELQNMICQSHTNGVSSSYSRSETQTSGALWDLIQLVGERARRRTVLLMDRENAEVFYSKVSDIEDLFYCLEKQLDSMIGEDMPFTVQFQRACEISNACVSILQTAMHYRSEHHLWYPSPDGLTPWYCQTVVRSGIWSIASFMLQLINETFRLDDAKKLDFYSHLEVLSEVLLDAYSGAITAKSERNEEQKGLLDEYWKRRDALLDSLHKQVKGFFQAKLQDPDGGTEVQNDEVIRKLSSKLLHIAKRHEGYQTLWSICCDLNDSELLKNLMHESMGPRGGFSNFVFKQLYDSKQYSRLMRLGEEFQEELAIFLKQHQDLRWLHEVFLNQFAAASETLHVVGLSQEDSSGLANEETHFCGTTNRTTLAERKHFLNLSKIAAMAGRNVDCPAKVKRIEADLNILKLQEEILGLLPDSDEKHNIGNRLLPPVDLIELCLKNQNRLLALRAFDVFAWTSFFFLKCNSSLLEECWRNAANQDDWERIYQLSVTEGWSDEETLHSLQETVLFQASTICYGPEAKTFDGGFDEVLPLRQENLEVEYVKDVSSSVEAILMQHKDFPDAGKLMLTAIMLGSAHAGTVINESCFPME 1333
BLAST of XM_017397281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068VC86 ((Uncharacterized protein {ECO:0000313|EMBL:CDP18351.1}))
HSP 1 Score: 1673.29 bits (4332), Expect = 0.000e+0
Identity = 830/1336 (62.13%), Postives = 1029/1336 (77.02%), Query Frame = 0
Match: A0A068VC86 ((Uncharacterized protein {ECO:0000313|EMBL:CDP18351.1}))
HSP 1 Score: 1673.29 bits (4332), Expect = 0.000e+0
Identity = 830/1336 (62.13%), Postives = 1029/1336 (77.02%), Query Frame = 0
Query: 1 MFSPGTKR------AKPRPTTQPPEA------ASPHTP----HHIANRPSTGTPAPWASRLSVLARISPGKKSDK-DDEDPNKPVYVGEFPEVVRNEQ-ANLMHKQLHGDAFNSGGIDKATSLAWIICGSKIFIWEYLASAKSRKCVVLDIPSTVSDIRGSSINSRLGNNWSLCIIIRDSMHKSRSKSLKQYSSVGVILCHLKSRAVVYWANIYSEGTTSPVTSIDNTE------------ANFSPGQQKT-------GSNYYNSFIASAATYPSNVCLALACSSSGDICQFICSPNGIERKVAIHNVLGLSLQGSDINQVNRSKGYPRSLTWHFANHSLEETERQFLLLTDHELQCFTVNLNNFYEVSKRWSHEIISPDGDLGIKKGLAGQKRIWPLDLQLDNSGKIITVLIATFCKDRVTSSSFIEYSLLTMQYKSGPRISSESTEQTDENVLEKKAPLQVIIPKARVEDEDILFLMRLKVGGKPSGSAIILSGDGTSTVSHYWRDSTRLYQFDLPYDAGKVLDASVLPS-DDGDDGPWVVLTQKAGLWAIPEKAVLLGGVEPPERSLSRKGSSNEGSAQVERRNFPFSGNIVPRRATSEAWDAGDKQKAVFTGITHRTAQDEESEALLNVLFNDFLLSGQVTGAFDKLNSSRAFERDGETSVFTRLSKSIVDTLAKHWTTTRGAEFVALSVVSNQLIDKQQKHQKFLQFLALSKCHEELCSKQRQSLQFIMEHGEKLSAVIHLKELQNNISH-RSSGLGGTYSTMENKVSGPLWDLIQLVGEKLRRNTVLLMDRDNAEVFYSKVSELEEVYSCLDRHLEFIITEEMQLPVQFERACELSNACVLLVRTALNYRNEYHMWYPSPEGLTPWYCRTVVRSGLWSIASFLLQISNESNRLDRPKRLEFYSNLEVLAEVLLEAYSGAITAKIDLKEDNLGLLNEYWSRRDTLFSSLYRQAKSFVEPSYQDLSEGDEEQGEEIFRQLSSRLLSIANRHEGYQTLWTICCDLNDSDLLRSYMHESMGPKGGFSYYVFEQLYNNKQFSKLIKLGEEFPEELLTFLKLHNDLLWLHQLFVHQFSAASETLHKLAFSQNAGFSPESEVLESHH--PVIEPTLADRKRFLNLSKIAALAGKSADYDTKLKRIEADLKLLKLQEEILKLLPENEETRKIGERLLPSLELIQLCLGSQHRELSIWAFDVFAWSTSFFIKSNASLLEECWRNAANEDEWGEIYQTSMSEGWSEEETHEYLKETILFQASRRCYGPNAATFEGGFEEVLPLRQENTDSFSLKE-TGSVEAILMQHKDFPEAGKLMLTAIMLGTFHADLTVEGSPSPME 1294
MFSPG ++ A R E ASP TP + I NRP+TGTPAPWASRLSVLARI P K+++K DD D +PVYVGEFP VR+EQ A L+ KQ G+ SGG+DK TSLAW+IC ++F+W Y + SR CVVLD+PS+ + R SS N+ N W +CI+ D ++++ K + Q +S G+I+C+ +SR +VYW IYSE ++PV S + E AN++ QQ+T G + NS IA+ ++VC++LACSS+GD+ QF CSP IERK ++LG + G D + + SKGYPRSLTW N S ET+RQFLLLTD E+QCF V L Y VSK WSHEI+ DGDLGI+K LAGQKRIWPLDLQ+DN GK+IT+LIA FCKDR+TSSS+ EYSLLTMQY+SG IS+E+ + T E VLEKKAP+QVIIPKARVEDE+ LF MRLK+GGKP+GS IILSGDGT+TVSHYWR+STRLYQFDLPYDAGKV DA+V PS DDG+DG W VLT+KAG+WAIPE+A+L+GGVEPPERSLSRKGSSNE S+Q ER+N FSGNI PRRA+SEAWDA D+ +A TGI HR AQDEESEALLN LFNDFLLSGQV G+ DKL S AFERDGET+VFTR+SKSIVDTLAKHWTTTRG E VALS+VS QLI+KQQKHQK LQFLALSKCHEELC+KQRQSLQ I+EHGEKL+ ++ L+ELQN I ++G+ +YS E + SG LWDLIQLVGE+ RR TVLLMDR+NAEVFYSKVS++E+++ CL++ L+ +I E+M VQF+RACE+SNACV +++TA++YR+E+H+WYP P+GLTPWYC+TVVRSG+WSIASF+LQ+ NE+ RLD K+L+FYS+LEVL+EVLL+AYSGAITAK + E+ GLL+EYW RRD L SL++Q K F + QD G E Q +E+ R+LSS+LL IA RHEGYQTLW+ICCDLNDS+LL++ MHESMGP+GGFS +VF+QLY++KQ+S+L++LGEEF EEL FLK H DL WLH++F++QF+AASETLH + SQ SP E+H TLA+RK FLNLSKIAA+AG++ D TK+KRIEADL +LKLQEEIL LLP+++E IG RLLP ++LI+LCL +Q+R L++ AFDVFAW++ FF+K N+SLLEECWRNAAN+D+W IYQ S++EGWS+EET L+ET+LFQAS CYGP A TF+GGF+EVLPLRQEN + +K+ + SVEAILMQHKDFP+ GKLMLTAIMLG+ HA + S PME
Sbjct: 1 MFSPGRRKSSYGSAAAARKDQNATEKSNDSSLASPKTPLQDSNVIPNRPATGTPAPWASRLSVLARIPPVKRNEKGDDGDLVQPVYVGEFPLAVRDEQQAALVQKQYPGEMSISGGMDKETSLAWVICRDRLFVWNYFSPIASRNCVVLDLPSSTFETRDSSRNAFNSNTWLVCILNWDCLNRNSDKLISQCNSAGIIVCNRRSRTLVYWPEIYSESRSAPVLSSASVEELEVLLWPGDGKANYNKQQQRTKQGSSITGLSSLNSLIATPVLGANHVCVSLACSSNGDLWQFFCSPFAIERKKIFQDMLGTASSGGDGSHLVGSKGYPRSLTWLLFN-SFSETKRQFLLLTDREIQCFCVKLTPDYNVSKLWSHEIVGTDGDLGIQKDLAGQKRIWPLDLQIDNDGKVITILIAIFCKDRITSSSYTEYSLLTMQYRSGLSISTENVKPTSERVLEKKAPIQVIIPKARVEDEEFLFSMRLKIGGKPAGSVIILSGDGTATVSHYWRNSTRLYQFDLPYDAGKVFDAAVFPSSDDGEDGAWAVLTEKAGIWAIPERAILIGGVEPPERSLSRKGSSNERSSQEERKNISFSGNIPPRRASSEAWDAVDRHRAPITGIAHRNAQDEESEALLNQLFNDFLLSGQVEGSVDKLKYSGAFERDGETNVFTRMSKSIVDTLAKHWTTTRGVEIVALSIVSTQLIEKQQKHQKHLQFLALSKCHEELCTKQRQSLQIILEHGEKLAGMLQLRELQNMICQSHTNGVSSSYSRSETQTSGALWDLIQLVGERARRRTVLLMDRENAEVFYSKVSDIEDLFYCLEKQLDSMIGEDMPFTVQFQRACEISNACVSILQTAMHYRSEHHLWYPPPDGLTPWYCQTVVRSGIWSIASFMLQLINETFRLDDAKKLDFYSHLEVLSEVLLDAYSGAITAKSERNEEQKGLLDEYWKRRDALLDSLHKQVKGFFQAKLQDPDGGTEVQNDEVIRKLSSKLLHIAKRHEGYQTLWSICCDLNDSELLKNLMHESMGPRGGFSNFVFKQLYDSKQYSRLMRLGEEFQEELAIFLKQHQDLRWLHEVFLNQFAAASETLHVVGLSQED--SPGLANEETHFCGTTNRTTLAERKHFLNLSKIAAMAGRNVDCPTKVKRIEADLNILKLQEEILGLLPDSDEKHNIGNRLLPPVDLIELCLKNQNRLLALRAFDVFAWTSFFFLKCNSSLLEECWRNAANQDDWERIYQLSVTEGWSDEETLHSLQETVLFQASTICYGPEAKTFDGGFDEVLPLRQENLEVEYVKDASSSVEAILMQHKDFPDTGKLMLTAIMLGSAHAGTVINESCFPME 1333
BLAST of XM_017397281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VID1 ((nuclear pore complex protein NUP133-like {ECO:0000313|RefSeq:XP_027102265.1}))
HSP 1 Score: 1669.44 bits (4322), Expect = 0.000e+0
Identity = 822/1322 (62.18%), Postives = 1021/1322 (77.23%), Query Frame = 0
Match: A0A6P6VID1 ((nuclear pore complex protein NUP133-like {ECO:0000313|RefSeq:XP_027102265.1}))
HSP 1 Score: 1669.44 bits (4322), Expect = 0.000e+0
Identity = 822/1322 (62.18%), Postives = 1021/1322 (77.23%), Query Frame = 0
Query: 1 MFSPGTKR------AKPRPTTQPPEA------ASPHTP----HHIANRPSTGTPAPWASRLSVLARISPGKKSDK-DDEDPNKPVYVGEFPEVVRNEQ-ANLMHKQLHGDAFNSGGIDKATSLAWIICGSKIFIWEYLASAKSRKCVVLDIPSTVSDIRGSSINSRLGNNWSLCIIIRDSMHKSRSKSLKQYSSVGVILCHLKSRAVVYWANIYSEGTTSPVTSIDNTE------------ANFSPGQQKT-------GSNYYNSFIASAATYPSNVCLALACSSSGDICQFICSPNGIERKVAIHNVLGLSLQGSDINQVNRSKGYPRSLTWHFANHSLEETERQFLLLTDHELQCFTVNLNNFYEVSKRWSHEIISPDGDLGIKKGLAGQKRIWPLDLQLDNSGKIITVLIATFCKDRVTSSSFIEYSLLTMQYKSGPRISSESTEQTDENVLEKKAPLQVIIPKARVEDEDILFLMRLKVGGKPSGSAIILSGDGTSTVSHYWRDSTRLYQFDLPYDAGKVLDASVLPS-DDGDDGPWVVLTQKAGLWAIPEKAVLLGGVEPPERSLSRKGSSNEGSAQVERRNFPFSGNIVPRRATSEAWDAGDKQKAVFTGITHRTAQDEESEALLNVLFNDFLLSGQVTGAFDKLNSSRAFERDGETSVFTRLSKSIVDTLAKHWTTTRGAEFVALSVVSNQLIDKQQKHQKFLQFLALSKCHEELCSKQRQSLQFIMEHGEKLSAVIHLKELQNNISH-RSSGLGGTYSTMENKVSGPLWDLIQLVGEKLRRNTVLLMDRDNAEVFYSKVSELEEVYSCLDRHLEFIITEEMQLPVQFERACELSNACVLLVRTALNYRNEYHMWYPSPEGLTPWYCRTVVRSGLWSIASFLLQISNESNRLDRPKRLEFYSNLEVLAEVLLEAYSGAITAKIDLKEDNLGLLNEYWSRRDTLFSSLYRQAKSFVEPSYQDLSEGDEEQGEEIFRQLSSRLLSIANRHEGYQTLWTICCDLNDSDLLRSYMHESMGPKGGFSYYVFEQLYNNKQFSKLIKLGEEFPEELLTFLKLHNDLLWLHQLFVHQFSAASETLHKLAFSQNAGFSPESEVLESHHPVIEPTLADRKRFLNLSKIAALAGKSADYDTKLKRIEADLKLLKLQEEILKLLPENEETRKIGERLLPSLELIQLCLGSQHRELSIWAFDVFAWSTSFFIKSNASLLEECWRNAANEDEWGEIYQTSMSEGWSEEETHEYLKETILFQASRRCYGPNAATFEGGFEEVLPLRQENTDSFSLKE-TGSVEAILMQHKDFPEAGKLMLTAIMLGTFHA 1282
MFSPG ++ A R E ASP TP + I NRP+TGTPAPWASRLSVLARI P K+++K DD D +PVYVGEFP VR+EQ A L+ KQ G+ SGG+DK TSLAW+IC ++F+W Y + SR CVVLD+PS+ + R SS N+ N W +CI+ D ++++ K + Q +S G+I+C+ +SR +VYW IYSE ++PV S + E AN++ +Q+T G + NS IA+ ++VC++LACSS+GD+ QF CSP IERK ++LG + G D + + SKGYPRSLTW N S ET+RQFLLLTD E+QCF V L Y VSK WSHEI+ DGDLGI+K LAGQKRIWPLDLQ+DN GK+IT+LIA FCKDR+TSSS+ EYSLLTMQY+SG IS+E+ + T E VLEKKAP+QVIIPKARVEDE+ LF MRLK+GGKP+GS IILSGDGT+TVSHYWR+STRLYQFDLPYDAGKV DA+V PS DDG+DG W VLT+KAG+WAIPE+A+L+GGVEPPERSLSRKGSSNE S+Q ER+N FSGNI PRRA+SEAWDA D+ +A TGI HR AQDEESEALLN LFNDFLLSGQV G+ DKL S AFERDGET+VFTR+SKSIVDTLAKHWTTTRG E VALS+VS QLI+KQQKHQK LQFLALSKCHEELC+KQRQSLQ I+EHGEKL+ ++ L+ELQN I ++G+ +YS E + SG LWDLIQLVGE+ RR TVLLMDR+NAEVFYSKVS++E+++ CL++ L+ +I E+M VQF+RACE+SNACV +++TA++YR+E+H+WYPSP+GLTPWYC+TVVRSG+WSIASF+LQ+ NE+ RLD K+L+FYS+LEVL+EVLL+AYSGAITAK + E+ GLL+EYW RRD L SL++Q K F + QD G E Q +E+ R+LSS+LL IA RHEGYQTLW+ICCDLNDS+LL++ MHESMGP+GGFS +VF+QLY++KQ+S+L++LGEEF EEL FLK H DL WLH++F++QF+AASETLH + SQ +E TLA+RK FLNLSKIAA+AG++ D K+KRIEADL +LKLQEEIL LLP+++E IG RLLP ++LI+LCL +Q+R L++ AFDVFAW++ FF+K N+SLLEECWRNAAN+D+W IYQ S++EGWS+EET L+ET+LFQAS CYGP A TF+GGF+EVLPLRQEN + +K+ + SVEAILMQHKDFP+ GKLMLTAIMLG+ HA
Sbjct: 1 MFSPGRRKSSYGSAAAARKDQNATEKSNDSSLASPKTPLQDSNVIPNRPATGTPAPWASRLSVLARIPPVKRNEKGDDVDLVQPVYVGEFPLAVRDEQQAALVQKQYPGEMSISGGMDKETSLAWVICRDRLFVWNYFSPTASRNCVVLDLPSSTFETRDSSRNAFNSNTWLVCILNWDCLNRNSDKLISQSNSAGIIVCNRRSRTLVYWPEIYSESRSAPVLSSASVEELEVLLLPGDGKANYNKQRQRTKQGSSITGLSSLNSLIATPVLGANHVCVSLACSSNGDLWQFFCSPFAIERKKIFQDMLGTASSGGDSSHLVGSKGYPRSLTWQLFN-SFSETKRQFLLLTDREIQCFCVKLTPDYNVSKLWSHEIVGTDGDLGIQKDLAGQKRIWPLDLQIDNDGKVITILIAIFCKDRITSSSYTEYSLLTMQYRSGLSISTENVKPTSERVLEKKAPIQVIIPKARVEDEEFLFSMRLKIGGKPAGSVIILSGDGTATVSHYWRNSTRLYQFDLPYDAGKVFDAAVFPSSDDGEDGAWAVLTEKAGIWAIPERAILIGGVEPPERSLSRKGSSNERSSQEERKNISFSGNIPPRRASSEAWDAVDRHRAPLTGIAHRNAQDEESEALLNQLFNDFLLSGQVEGSVDKLKYSGAFERDGETNVFTRMSKSIVDTLAKHWTTTRGVEIVALSIVSTQLIEKQQKHQKHLQFLALSKCHEELCTKQRQSLQIILEHGEKLAGMLQLRELQNMICQSHTNGVSSSYSRSETQTSGALWDLIQLVGERARRRTVLLMDRENAEVFYSKVSDIEDLFYCLEKQLDSMIGEDMPFTVQFQRACEISNACVSILQTAMHYRSEHHLWYPSPDGLTPWYCQTVVRSGIWSIASFMLQLINETFRLDDAKKLDFYSHLEVLSEVLLDAYSGAITAKSERNEEQKGLLDEYWKRRDALLDSLHKQVKGFFQAKLQDPDGGTEVQNDEVIRKLSSKLLHIAKRHEGYQTLWSICCDLNDSELLKNLMHESMGPRGGFSNFVFKQLYDSKQYSRLMRLGEEFQEELAIFLKQHQDLRWLHEVFLNQFAAASETLHVVGLSQEDSSGLANEETHFCGTTNRTTLAERKHFLNLSKIAAMAGRNVDCPAKVKRIEADLNILKLQEEILGLLPDSDEKHNIGNRLLPPVDLIELCLKNQNRLLALRAFDVFAWTSFFFLKCNSSLLEECWRNAANQDDWERIYQLSVTEGWSDEETLHSLQETVLFQASTICYGPEAKTFDGGFDEVLPLRQENLEVEYVKDVSSSVEAILMQHKDFPDTGKLMLTAIMLGSAHA 1321
BLAST of XM_017397281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835A556 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8414232.1}))
HSP 1 Score: 1662.12 bits (4303), Expect = 0.000e+0
Identity = 837/1332 (62.84%), Postives = 1023/1332 (76.80%), Query Frame = 0
Match: A0A835A556 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8414232.1}))
HSP 1 Score: 1662.12 bits (4303), Expect = 0.000e+0
Identity = 837/1332 (62.84%), Postives = 1023/1332 (76.80%), Query Frame = 0
Query: 1 MFSPGTKRA-----KPRPTTQP-PEAASPHTP----------HHIANRPSTGTPAPWASRLSVLARISPGKKSDKD-DEDPNKPVYVGEFPEVVRNEQANLMHKQLHGDAFNSGGIDKATSLAWIICGSKIFIWEYLASAKSRKCVVLDIPSTVSDIRGSSINSRLGNNWSLCIIIRDSMHKSRSKSLKQYSSVGVILCHLKSRAVVYWANIYSEGTTSPVTSIDNTEANFSPGQQKTGSNY----------------YNSFIASAATYPSNVCLALACSSSGDICQFICSPNGIERKVAIHNVLGLSLQGSDINQVNRSKGYPRSLTWHFANHSLEETERQFLLLTDHELQCFTVNLNNFYEVSKRWSHEIISPDGDLGIKKGLAGQKRIWPLDLQLDNSGKIITVLIATFCKDRVTSSSFIEYSLLTMQYKSGPRISSESTEQTDENVLEKKAPLQVIIPKARVEDEDILFLMRLKVGGKPSGSAIILSGDGTSTVSHYWRDSTRLYQFDLPYDAGKVLDASVLPS-DDGDDGPWVVLTQKAGLWAIPEKAVLLGGVEPPERSLSRKGSSNEGSAQVERRNFPFSGNIVPRRATSEAWDAGDKQKAVFTGITHRTAQDEESEALLNVLFNDFLLSGQVTGAFDKLNSSRAFERDGETSVFTRLSKSIVDTLAKHWTTTRGAEFVALSVVSNQLIDKQQKHQKFLQFLALSKCHEELCSKQRQSLQFIMEHGEKLSAVIHLKELQNNIS-HRSSGLGGTYSTMENKVSGPLWDLIQLVGEKLRRNTVLLMDRDNAEVFYSKVSELEEVYSCLDRHLEFIITEEMQLPVQFERACELSNACVLLVRTALNYRNEYHMWYPSPEGLTPWYCRTVVRSGLWSIASFLLQISNESNRLDRPKRLEFYSNLEVLAEVLLEAYSGAITAKIDLKEDNLGLLNEYWSRRDTLFSSLYRQAKSFVEPSYQDLSEGDEEQGEEIFRQLSSRLLSIANRHEGYQTLWTICCDLNDSDLLRSYMHESMGPKGGFSYYVFEQLYNNKQFSKLIKLGEEFPEELLTFLKLHNDLLWLHQLFVHQFSAASETLHKLAFSQN-AGFSPESEVLESHHPVIEPTLADRKRFLNLSKIAALAGKSADYDTKLKRIEADLKLLKLQEEILKLLPENEETRKIGERLLPSLELIQLCLGSQHRELSIWAFDVFAWSTSFFIKSNASLLEECWRNAANEDEWGEIYQTSMSEGWSEEETHEYLKETILFQASRRCYGPNAATFEGGFEEVLPLRQENTDSFSLKETG-SVEAILMQHKDFPEAGKLMLTAIMLGTFHADLTVEGSPSPMEG 1295
MFSP TK++ K R P+ SP TP I NRPSTGTPAPWASRLSVLARI P KK++K D DP +PVYVGEFP+VVR+ Q++ + K + GDA SGG+DK TSL+WII G+++FIW YL A S+ CVVL I S+VS+ S S GN+W +C++ +S S +K ++Q + VG+++C+ K++AV+YW NIYSE S S D ++ FSPG K N +NS IASA +C+ALACSS G++ QF CSP+GI RK + LS QGSD +Q SKGYPRSL W F + LEE+ RQF LLTD E+QCF ++L++ VSK WSHEIIS DGDLGIKK LAGQKRIWPLD+Q+D+ GK +T+L+ATFCKDRV+SSS+ +YSLLTMQYK G ISSE E E +LEKKAP+QVIIPKARVE+ED+LF MRL+VGGKPSGSAIILSGDGT+TVS+YWR+STRLYQFDLP+DAGKVLDASV PS +DG++G WVVLT+KAG+WAIPEKAVLLGGVEPPERSLSRKGSSNEG+A+ ERRN F+ NIVPRRA+SEAWDAGD+Q+AV TGI RTAQDEESEALL LF+DFLLSGQV G+ +KL +S AFE+DGET+VF R+SKSIVDTLAKHWTTTRGAE VA +V S+QL+DKQQKHQ++LQFLALSKCHEELCS+QR SLQ IMEHGEKL +I LKELQ I+ +RS+ +G YS N+ G LWDLIQLVGEK RRNTVLLMDRDNAEVFYSKVS+LEEV+ CLDR LE +I+ E VQ +RACELSNAC L+RTA++YRNE+H WYPSPEGLTPWYC+ VVR+GLWSIASF+ Q+ NE+ L+ + + YS+LE LA+VLLEA GAITAK++ E++ GLL+EY RRD L SLY+Q K FVE YQD E EE+ E R LSS LL+IA RHEGYQTLW ICCDLND+ LLRS MH+SMGP GGF+Y+VF+QLY N+QF+KL++LGEEF E+L FL+ H DLLWLH++F++ FS ASETLH LA SQ+ + S EV E+ H EPTLA+R+R LNLSKIAA+AG+ A+++T++KR+EADLK+LKLQEEI++ LP++EE + IG +LLP ELI+LCL +Q ELS+ AFDVFAW++S F+K+N SLLEECW+NAA++D W +YQ S++EGWS+EET L+ET+LFQ S RCYGP+A +EGGF+EVL LR + LK+TG SVE ILMQHKDF +AGKLMLTAIMLG AD+ E SPMEG
Sbjct: 1 MFSPATKKSNFSSQKVRNLGHAVPD--SPSTPLSDNRRSSYGASIPNRPSTGTPAPWASRLSVLARIPPVKKTEKGADSDPIEPVYVGEFPQVVRDGQSSFVQKIVPGDAGISGGMDKETSLSWIIFGNRLFIWSYLLPAASKNCVVLKIHSSVSESGDISTKSDHGNSWMVCVVNWNSTRGSTNKVVQQCNPVGIVICNQKTKAVIYWPNIYSEDGAS--ASFDESDVTFSPGDGKITPNRPQQRSRHGSSLIEPSSFNSLIASAIPGTPPMCIALACSSCGELWQFQCSPSGIYRKKISQDFKILSTQGSDNDQPLGSKGYPRSLIWRFRHLFLEESNRQFFLLTDQEIQCFNISLSHDPNVSKLWSHEIISTDGDLGIKKDLAGQKRIWPLDMQVDDRGKELTILVATFCKDRVSSSSYTQYSLLTMQYKPGLNISSEIVEPIRERILEKKAPIQVIIPKARVEEEDLLFSMRLRVGGKPSGSAIILSGDGTATVSNYWRNSTRLYQFDLPWDAGKVLDASVFPSTEDGEEGAWVVLTEKAGVWAIPEKAVLLGGVEPPERSLSRKGSSNEGAAEEERRNLAFAANIVPRRASSEAWDAGDRQRAVLTGIARRTAQDEESEALLGRLFHDFLLSGQVDGSLEKLKNSGAFEKDGETNVFARISKSIVDTLAKHWTTTRGAEIVATTVTSSQLLDKQQKHQRYLQFLALSKCHEELCSRQRHSLQTIMEHGEKLVGMIQLKELQYMINQNRSNVIGSPYSNSPNETVGSLWDLIQLVGEKARRNTVLLMDRDNAEVFYSKVSDLEEVFYCLDRQLEHLISGEQPFKVQIQRACELSNACTTLIRTAMHYRNEHHTWYPSPEGLTPWYCQPVVRNGLWSIASFMPQLLNEATGLELSAKSDLYSHLEGLADVLLEASIGAITAKVERGEEHKGLLDEYCKRRDVLLDSLYQQVKGFVEARYQDSDELIEERKEIFLRDLSSPLLAIAKRHEGYQTLWNICCDLNDTVLLRSLMHDSMGPNGGFNYFVFKQLYENRQFAKLLRLGEEFQEDLAAFLRQHRDLLWLHEMFLNHFSLASETLHALALSQDESSVSAAEEVSETDHTKSEPTLAERRRLLNLSKIAAMAGRDAEFETRIKRVEADLKILKLQEEIMRRLPDDEEKQNIGLQLLPPRELIELCL-NQTPELSLLAFDVFAWTSSSFMKNNGSLLEECWKNAADQDNWESLYQASIAEGWSDEETLRILRETVLFQVSNRCYGPDAEMYEGGFDEVLSLRHGEEEFSMLKDTGSSVEGILMQHKDFSDAGKLMLTAIMLGKLGADIKAEEGCSPMEG 1327
BLAST of XM_017397281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3ZSN2 ((nuclear pore complex protein NUP133-like {ECO:0000313|RefSeq:XP_016467372.1}))
HSP 1 Score: 1655.19 bits (4285), Expect = 0.000e+0
Identity = 826/1332 (62.01%), Postives = 1020/1332 (76.58%), Query Frame = 0
Match: A0A1S3ZSN2 ((nuclear pore complex protein NUP133-like {ECO:0000313|RefSeq:XP_016467372.1}))
HSP 1 Score: 1655.19 bits (4285), Expect = 0.000e+0
Identity = 826/1332 (62.01%), Postives = 1020/1332 (76.58%), Query Frame = 0
Query: 1 MFSPGTKRA-----KPRPTTQPPEAASPHTPHH--------IANRPSTGTPAPWASRLSVLARISPGKKSDKDDE-DPNKPVYVGEFPEVVRNEQANLMHKQLHGDAFNSGGIDKATSLAWIICGSKIFIWEYLASAKSRKCVVLDIPSTVSDIRGSSINSRLGNNWSLCIIIRDSMHKSRSKSLKQYSSVGVILCHLKSRAVVYWANIYSEGTTSPVTSI-DNTEANFS----------------PGQQKTGSNYYNSFIASAA--TYPSNVCLALACSSSGDICQFICSPNGIERKVAIHNVLGLSLQGSDINQVNRSKGYPRSLTWHFANHSLEETERQFLLLTDHELQCFTVNLNNFYEVSKRWSHEIISPDGDLGIKKGLAGQKRIWPLDLQLDNSGKIITVLIATFCKDRVTSSSFIEYSLLTMQYKSGPRISSESTEQTDENVLEKKAPLQVIIPKARVEDEDILFLMRLKVGGKPSGSAIILSGDGTSTVSHYWRDSTRLYQFDLPYDAGKVLDASVLPS-DDGDDGPWVVLTQKAGLWAIPEKAVLLGGVEPPERSLSRKGSSNEGSAQVERRNFPFSGNIVPRRATSEAWDAGDKQKAVFTGITHRTAQDEESEALLNVLFNDFLLSGQVTGAFDKLNSSRAFERDGETSVFTRLSKSIVDTLAKHWTTTRGAEFVALSVVSNQLIDKQQKHQKFLQFLALSKCHEELCSKQRQSLQFIMEHGEKLSAVIHLKELQNNISHRSSGLGGTYSTMENKVSGPLWDLIQLVGEKLRRNTVLLMDRDNAEVFYSKVSELEEVYSCLDRHLEFIITEEMQLPVQFERACELSNACVLLVRTALNYRNEYHMWYPSPEGLTPWYCRTVVRSGLWSIASFLLQISNESNRLDRPKRLEFYSNLEVLAEVLLEAYSGAITAKIDLKEDNLGLLNEYWSRRDTLFSSLYRQAKSFVEPSYQDLSEGDEEQGEEIFRQLSSRLLSIANRHEGYQTLWTICCDLNDSDLLRSYMHESMGPKGGFSYYVFEQLYNNKQFSKLIKLGEEFPEELLTFLKLHNDLLWLHQLFVHQFSAASETLHKLAFSQNAGFSPESEVLESHHPVIEPTLADRKRFLNLSKIAALAGKSADYDTKLKRIEADLKLLKLQEEILKLLPENEETRKIGERLLPSLELIQLCLGSQHRELSIWAFDVFAWSTSFFIKSNASLLEECWRNAANEDEWGEIYQTSMSEGWSEEETHEYLKETILFQASRRCYGPNAATFEGGFEEVLPLRQENTDSFSLKETG-SVEAILMQHKDFPEAGKLMLTAIMLGTFHAD---LTVEGSPSPME 1294
MFSPGTKR+ K +PTT +P T + I NRP+TGTPAPWASRLSVLARI P KKSDK +E DP +PVYVGEFP+V+R+E A + K G+A SGG+DK TSLAWIICG+K+FIW YL+ A SR CVVLD+PST+S G+ + N+W +C+I D +S +K + Q +S G+I CH +R ++YW +IYS PV S + +E +FS PG + SN IA AA T S+ +ALACS +G++ QFICSP+GI+R+ ++L S QGSD Q +GYPRSL W SL E++RQFLLLTDHE+QCF++ L+ + VSK W+HEI+ DGDLGI+K LAGQKRIWPLDLQ+DN GK+IT+LIA FCKDRVTSSS+ EYSLLTMQYKSG +SSE Q E +LEKKAP+QVIIPKARVEDE+ LF MRLKVGGKP+GS IILSGDGT+TVSHYWR+STRLYQFDLPYDAG+VLDASV PS DDG+DG W VLT++AG+WAIPE+AVL+GGVEPPERSLSRKGSSNE S+ ER+N F GN+ PRRATSEAWD GD+Q+ TGI R AQDEESEALLN LF+DFLLSG GAFDKL +S AFER+GET+VF R SKSIVDTLAKHWTTTRGAE VA SVVS+QL++KQQKH++FLQFLALSKCHEELC +QR +LQ IMEHGEKL+ +I L+ELQN ++ + G+YST E +SG LWD+IQLVGE+ RR TVLLMDRDNAEVFYSKVS+LEE + CL+R L++II+E+M + V F+R CELS+ACV L+RTA+ YRNE +WYP EGLTPW C+ VR+GLWS+A F+LQ+ E+N LD K L+F+S+LEVL+++LLEAYSGA++AK++ E + LL+EY +RRD L LY+Q K VE Q L EG EEQ EIF +LSS LL+IA RHEGY+TLW+ICCDLN+++LL++ MH+SMGPK GFSY+VF+QLY+NKQFSKL++LGEEF EEL FLK H DLLWLH++F+ QFS ASETLH L+ S + S + S P +E +L +RKRFLNLSKIAALAG+SA+++TK+KRIEADLK+L LQEEI+KLLP++E + + +RLLP ++LI+LCL Q+RELS+ FDVFAW+ S FIKSNASLLE+CWRNA+N+D+W +Y S+ EGWS+EET LK+TILFQAS RCYGP A TFEG F+EVLPLR EN+D +LK G SVE ILMQHKD+P+AGKLMLTA+MLG+ H+D + E P+PME
Sbjct: 1 MFSPGTKRSNFTARKSKPTTVTDSPVTPLTENRRTVENDNSIPNRPTTGTPAPWASRLSVLARIPPAKKSDKGEETDPIQPVYVGEFPQVLRDEHAVFLQKHAPGNASISGGMDKETSLAWIICGNKLFIWSYLSPAASRNCVVLDLPSTMS---GNEDIGKSSNDWLVCLINWD---QSTNKVVPQCTSAGIIACHRNTRNLIYWPDIYSTARNEPVVSFPEESEISFSTSDVKGTPTKSHQQNKPGSSVSRSNSLICLIACAAPETQHSHASVALACSFNGELWQFICSPSGIQRRKICQDMLSKSSQGSDGGQFFGGRGYPRSLVWQ----SLSESDRQFLLLTDHEIQCFSIKLSASFNVSKIWTHEIVGTDGDLGIQKDLAGQKRIWPLDLQIDNDGKVITILIAIFCKDRVTSSSYTEYSLLTMQYKSGVNVSSECV-QPHERILEKKAPIQVIIPKARVEDEEFLFSMRLKVGGKPAGSVIILSGDGTATVSHYWRNSTRLYQFDLPYDAGRVLDASVFPSSDDGEDGAWAVLTERAGVWAIPERAVLIGGVEPPERSLSRKGSSNERSSLEERKNLSFVGNVAPRRATSEAWDTGDRQRPGLTGIARRNAQDEESEALLNQLFHDFLLSGHADGAFDKLKTSGAFEREGETNVFARTSKSIVDTLAKHWTTTRGAEIVASSVVSSQLLEKQQKHKRFLQFLALSKCHEELCFRQRHALQIIMEHGEKLAGLIQLRELQNMLNQNRASGAGSYSTTEMSMSGSLWDVIQLVGERARRRTVLLMDRDNAEVFYSKVSDLEEFFYCLERDLDYIISEKMTVAVLFQRTCELSSACVTLLRTAMTYRNENDLWYPLSEGLTPWTCQEKVRNGLWSLAHFMLQLVKENNSLDDTKILDFHSHLEVLSDILLEAYSGAVSAKVERGEGHKSLLDEYCNRRDALLDCLYQQVKDVVEGKLQHLGEGAEEQKSEIFGKLSSGLLTIAKRHEGYKTLWSICCDLNNTELLKNLMHDSMGPKRGFSYFVFQQLYDNKQFSKLMRLGEEFQEELAIFLKQHQDLLWLHEIFLRQFSEASETLHVLSLSPDDS-SAMDDGTYSFDPTVETSLVERKRFLNLSKIAALAGRSANFETKVKRIEADLKILNLQEEIMKLLPDDER-QNVRQRLLPPVDLIELCLKIQNRELSLRVFDVFAWTRSSFIKSNASLLEDCWRNASNQDDWERLYLASVDEGWSDEETLSILKDTILFQASNRCYGPKAETFEGNFQEVLPLRLENSDHVNLKNMGSSVENILMQHKDYPDAGKLMLTAVMLGSVHSDTISIMEEEGPTPME 1319
BLAST of XM_017397281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2MBA2 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL08p028494:mrna}))
HSP 1 Score: 1650.18 bits (4272), Expect = 0.000e+0
Identity = 823/1336 (61.60%), Postives = 1028/1336 (76.95%), Query Frame = 0
Match: A0A7N2MBA2 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL08p028494:mrna}))
HSP 1 Score: 1650.18 bits (4272), Expect = 0.000e+0
Identity = 823/1336 (61.60%), Postives = 1028/1336 (76.95%), Query Frame = 0
Query: 1 MFSPGTKRA-----KPRPTTQP---PEAASPHTPHH-------IANRPSTGTPAPWASRLSVLARISPGKKSDKDDEDPNKPVYVGEFPEVVRNEQANLMHKQLHGDAFNSGGIDKATSLAWIICGSKIFIWEYLASAKSRKCVVLDIPSTVSDIRGSSINSRLGNNWSLCIIIRDSMHKSRSKSLKQYSSVGVILCHLKSRAVVYWANIYSEGTTSPVTSIDNTE----------ANFSPGQQK---------TGSNYYNSFIASAATYPSNVCLALACSSSGDICQFICSPNGIERKVAIHNVLGLSLQGSDINQVNRSKGYPRSLTWHFANHSLEETERQFLLLTDHELQCFTVNLNNFYEVSKRWSHEIISPDGDLGIKKGLAGQKRIWPLDLQLDNSGKIITVLIATFCKDRVTSSSFIEYSLLTMQYKSGPRISSESTEQTDENVLEKKAPLQVIIPKARVEDEDILFLMRLKVGGKPSGSAIILSGDGTSTVSHYWRDSTRLYQFDLPYDAGKVLDASVLPS-DDGDDGPWVVLTQKAGLWAIPEKAVLLGGVEPPERSLSRKGSSNEGSAQVERRNFPFSGNIVPRRATSEAWDAGDKQKAVFTGITHRTAQDEESEALLNVLFNDFLLSGQVTGAFDKLNSSRAFERDGETSVFTRLSKSIVDTLAKHWTTTRGAEFVALSVVSNQLIDKQQKHQKFLQFLALSKCHEELCSKQRQSLQFIMEHGEKLSAVIHLKELQNNIS-HRSSGLGGTYSTMENKVSGPLWDLIQLVGEKLRRNTVLLMDRDNAEVFYSKVSELEEVYSCLDRHLEFIITEEMQLPVQFERACELSNACVLLVRTALNYRNEYHMWYPSPEGLTPWYCRTVVRSGLWSIASFLLQISNESNRLDRPKRLEFYSNLEVLAEVLLEAYSGAITAKIDLKEDNLGLLNEYWSRRDTLFSSLYRQAKSFVEPSYQDLSEGDEEQGEEIFRQLSSRLLSIANRHEGYQTLWTICCDLNDSDLLRSYMHESMGPKGGFSYYVFEQLYNNKQFSKLIKLGEEFPEELLTFLKLHNDLLWLHQLFVHQFSAASETLHKLAFSQNAGFSPESEV---LESHHPVIEPTLADRKRFLNLSKIAALA--GKSADYDTKLKRIEADLKLLKLQEEILKLLPENEETRKIGERLLPSLELIQLCLGSQHRELSIWAFDVFAWSTSFFIKSNASLLEECWRNAANEDEWGEIYQTSMSEGWSEEETHEYLKETILFQASRRCYGPNAATFEGGFEEVLPLRQENTDSFSLKET-GSVEAILMQHKDFPEAGKLMLTAIMLGTFHADLTVEGSPSPME 1294
MFSPGTKR + R Q P+ SP TPH + +RPSTGTPAPWA RLSV ARI +SD + D KPVYVGEFP+VVR+EQA+ + +++ DA SGG++K TSLAWIICG+++FIW YL+ A S KC+VL++PS VS+ +I S N+W LC++ DS + K +K +S G++LC+ K+R ++YW +IYSEG T P+TS +++ +P + K GS+ NS IASA ++C+A AC S+G++ QF CSP GI RK ++L LS QG D Q+ SKGYPRSLTW F++ S EE+ RQF LLTDHE+ CF+VNLN +SK WSHEII DGDLGIKK LAGQKRIWPLD+Q+D+ GK+IT+L+ATFCKDR + SS+ +YSLLTMQYKSG S E T E VLEKKAP+QVIIPKARVEDED LF MRL+VGGKPSGSAII+SGDGT+TVSHY+R++T+LYQFDLPYDAGKVLDASVLPS DD ++G WVVLT+KAG+WAIPEKAV+LGGVEPPERSLSRKGSSNEGS Q ERRN F+ +I PRRA+SEAWDAG++Q FTGI RT QDEESEALL+ LF+DFL SGQV +KL SS AFERDGET+VF R+SKSIVDTLAKHWTTTRGAE +A++VVS QL+DKQQKH KFLQFLALSKCHEELCS+QR SLQ I+EHGEKL+ +I L+ELQN IS +RS G+G ++S+ E ++SG LWDLIQLVGE+ RRNTVLLMDRDNAEVFYSKVS+LE+++ CLDRHL+++I+ E L +Q RACELSNACV ++ A++YRN+ H+WYP PE LTPWYC+ VVR+GLWSIAS++LQ+ NE++ +D + + Y++LEVL EVLLEAY+GA+TAK+D E + GLL+EYW+RRDTL SLY+Q +VE ++DL+E +E+ EEI R+LSSRLLSIA RHE Y+ +W ICCDLNDS LLR+ MHESMGP GGFSY+VF+QLY +QFSKL++LGEEFPEEL FL+ H +LLWLH++F++QFS+ASE LH LA S + +EV ES H +EPTLADRK FLNLSKIAA A GK+AD +TKLKRIEADLK+LKLQEEI+KLLP +EE + + LL ELI+LCL Q+ +LS+ AFDVFAW++S F K++ +LLEECW+NAA++D+W ++Q S ++GWS+EET + L+ET+LFQAS RCYG +A TF GF+EVLPLR EN + +++ SVE+ILMQHKDFPEAGKLMLT+IMLG+ H D +E PSPME
Sbjct: 1 MFSPGTKRGNLSSKRERNVVQKSLLPKIESPITPHRRPLIDNSVPDRPSTGTPAPWAPRLSVFARIPAVNRSD--NADAIKPVYVGEFPQVVRDEQASWLQQRVPDDACISGGMEKGTSLAWIICGNRLFIWSYLSPAASIKCIVLELPSDVSE--NGNIGSNDRNSWLLCVVNWDSTSRRTKKVVKHCNSAGIVLCNQKTRVIIYWPDIYSEGRTDPITSFASSDELEVTSSLVDGKATPNRHKQPIRLGSSLAGSSTLNSLIASAVPNSQHICVAFACGSNGELWQFYCSPTGIHRKKVYDDILNLSFQGGDSGQLIESKGYPRSLTWRFSHVSPEESNRQFYLLTDHEIHCFSVNLNPEIHISKLWSHEIIGTDGDLGIKKDLAGQKRIWPLDVQVDDHGKVITILVATFCKDRASGSSYTQYSLLTMQYKSG-----MSIEPTHERVLEKKAPIQVIIPKARVEDEDFLFSMRLRVGGKPSGSAIIMSGDGTATVSHYYRNATKLYQFDLPYDAGKVLDASVLPSSDDVEEGAWVVLTEKAGIWAIPEKAVVLGGVEPPERSLSRKGSSNEGSTQEERRNLTFAADIAPRRASSEAWDAGERQAGGFTGIARRTGQDEESEALLSHLFHDFLSSGQVDSLLEKLKSSGAFERDGETNVFARMSKSIVDTLAKHWTTTRGAEILAMAVVSTQLMDKQQKHTKFLQFLALSKCHEELCSRQRYSLQIILEHGEKLAGMIQLRELQNVISQNRSIGVGSSHSSAEIQMSGALWDLIQLVGERARRNTVLLMDRDNAEVFYSKVSDLEDIFYCLDRHLDYVISIEQPLGIQIHRACELSNACVTIIHEAMHYRNDNHLWYPPPEHLTPWYCQPVVRNGLWSIASYMLQLFNEASGIDMSAKSDLYTHLEVLTEVLLEAYAGAVTAKVDRGEGHKGLLDEYWNRRDTLLDSLYKQVLDYVEGRHRDLNE--DEKKEEILRKLSSRLLSIAKRHECYRAMWRICCDLNDSVLLRNLMHESMGPNGGFSYFVFKQLYEQRQFSKLLRLGEEFPEELSIFLRQHEELLWLHEVFLNQFSSASEILHTLALSHDESSISATEVGADRESMH--LEPTLADRKHFLNLSKIAARAAPGKNADSETKLKRIEADLKILKLQEEIIKLLPPDEEKQCVERCLLRPEELIKLCLKGQNAKLSLCAFDVFAWTSSSFRKTHRNLLEECWKNAADQDDWNGLFQESTAQGWSDEETLQNLRETVLFQASSRCYGLDAETFGEGFDEVLPLRLENVEPPVFRDSISSVESILMQHKDFPEAGKLMLTSIMLGSVHDDTRLEEGPSPME 1323
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5A440 | E-Value: 0.000e+0, PID: 66.09 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8524... [more] |
| A0A5B7BVC6 | E-Value: 0.000e+0, PID: 65.89 | (Uncharacterized protein {ECO:0000313|EMBL:MPA7290... [more] |
| A0A2R6QT67 | E-Value: 0.000e+0, PID: 64.56 | (Nuclear pore complex protein {ECO:0000313|EMBL:PS... [more] |
| A0A7J0FMM0 | E-Value: 0.000e+0, PID: 64.11 | (Nucleoporin, Nup133/Nup155-like protein {ECO:0000... [more] |
| A0A6P6S7C9 | E-Value: 0.000e+0, PID: 61.99 | (nuclear pore complex protein NUP133-like {ECO:000... [more] |
| A0A068VC86 | E-Value: 0.000e+0, PID: 62.13 | (Uncharacterized protein {ECO:0000313|EMBL:CDP1835... [more] |
| A0A6P6VID1 | E-Value: 0.000e+0, PID: 62.18 | (nuclear pore complex protein NUP133-like {ECO:000... [more] |
| A0A835A556 | E-Value: 0.000e+0, PID: 62.84 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8414... [more] |
| A0A1S3ZSN2 | E-Value: 0.000e+0, PID: 62.01 | (nuclear pore complex protein NUP133-like {ECO:000... [more] |
| A0A7N2MBA2 | E-Value: 0.000e+0, PID: 61.60 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |