Resource Type:
Polypeptide
Name:
XM_017401365.1
Identifier:
XM_017401365.1-protein
Sequence:
MDASDKAQEYMKTNGNEKPKSRSSTNGMRSASISIPMYSLDCSDTENSFS
GRSGPLCTERKISYTQMSGPLYANLKNDNCFQDTQGAIGSRATEATLEKY
PSVNGLVQIDWPHNNHVVTNENLLSSGQLGMCNDPYCTTCPTYFEGQRKN
KKVSSISDQKKLPYINYQQFPIPTIKQGDAKGWAWRMFFSLYRCIPGVMN
PHAKIVQYWNKFFVISCLFAVFLDPLFFFLLSVKKEHKCIVFNETMTKVL
ITLRSLTDFIYFLHVLLQFRLAYVAPESRVVGSGDLVDRPRKIALNYLYG
HFLIDFFVVLPLPQIIIWLVLKKFKGSSGANYAKNFLRAAILVQYIPRLY
RILPMLAGQTASGFIFESAWANFVINLLTFVLSGHVVGSCWYLFGLQRVN
ECLRNACDEHWCIKFIDCGQGNENERFRDNLESWKNWTNNATASACFGEG
SFPYGIYVQTVNLTTESSLITRYIYSLFWGFQQISTLAGNLTPSFYVGEV
LFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLELSLRRRDVEQWMSHRR
LPEELRRQIRESERYNWAATRGVDESMLLENLPEDLQRDIRRHLFKFVNK
VRIFSLMDEPVLDAMRERLKQKTYIKGSRILVPGDLVDKMVFIVRGKLES
VGEDKNIVPLSEGDVCGEDLLTWCLEHSSVNKDGKRIRSPGHKLLSNRMA
RCLTNVEAFILRAADLEEVTSLFSRFLRNPRVQGALRYESPYWRCLAATR
IQVAWRYRKKRLNRATTVSSTYNHSPGN
Sequence Length:
778
Sequence Checksum:
51f813db17b55d735d8e52b2f2fe13ef
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017401365.1, derives from mRNA, XM_017401365.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017401365.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017401365.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AYW7 ((probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 {ECO:0000313|RefSeq:XP_021292076.1}))
HSP 1 Score: 1056.97 bits (2732), Expect = 0.000e+0
Identity = 532/764 (69.63%), Postives = 616/764 (80.63%), Query Frame = 0
Match: A0A6J1AYW7 ((probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 {ECO:0000313|RefSeq:XP_021292076.1}))
HSP 1 Score: 1056.97 bits (2732), Expect = 0.000e+0
Identity = 532/764 (69.63%), Postives = 616/764 (80.63%), Query Frame = 0
Query: 13 TNGNEKPKSRSSTNGMRSASISIPMYSLDCSDTENSFSGRSGPLCTERKISYTQMSGPLYANLKNDNCFQDTQGAIGSRATEATLEKYPSVNGLVQIDWPHNNHVVTNENLLSSGQLGMCNDPYCTTCPTYFE---GQRKNKKVSSISDQKKLPYINYQQFPIPTIKQGDAKGWAWRMFFSLYRCIPGVMNPHAKIVQYWNKFFVISCLFAVFLDPLFFFLLSVKKEHKCIVFNETMTKVLITLRSLTDFIYFLHVLLQFRLAYVAPESRVVGSGDLVDRPRKIALNYLYGHFLIDFFVVLPLPQIIIWLVLKKFKGSSGANYAKNFLRAAILVQYIPRLYRILPMLAGQTASGFIFESAWANFVINLLTFVLSGHVVGSCWYLFGLQRVNECLRNACDE---HWCIKFIDCGQGNENERFRDNLESWKNWTNNATASACFGEGSFPYGIYVQTVNLTTESSLITRYIYSLFWGFQQISTLAGNLTPSFYVGEVLFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLELSLRRRDVEQWMSHRRLPEELRRQIRESERYNWAATRGVDESMLLENLPEDLQRDIRRHLFKFVNKVRIFSLMDEPVLDAMRERLKQKTYIKGSRILVPGDLVDKMVFIVRGKLESVGEDKNIVPLSEGDVCGEDLLTWCLEHSSVNKDGKRIRSPGHKLLSNRMARCLTNVEAFILRAADLEEVTSLFSRFLRNPRVQGALRYESPYWRCLAATRIQVAWRYRKKRLNRATTVSS 770
+ N+ + ++ + +SASI+IPM S++ ++ N G +GPL ERKI + QMSGPLY + K +N F Q G + E+ EK+PS NG+ + DW NN+V NE+LL SGQLGMCNDPYCTTCPTY+ Q KN K S I D K + GDAKGWA R+ L +PGVMNPHAK+VQ WN+FFVISCL AVF+DPLFFFLLSV+K++KCIV N TK + LRS+TDFIY L++LLQFRLAY+APESRVVG+G+LVD P+KIA+NYL +F +D FVVLPLPQI+I LVL K GSSGAN+AKN LR AIL+QY+PRLYR LP LAGQ+ SGFIFESAWANFVINLLTF+LSGH+VGSCWYL GLQRVN+CLRNAC + C +FIDCG G+ + R L SWKN TN ASACF E FPYGIY+QTVNLTTE S+ITRY+YSLFWGFQQISTLAGN PS++V EVLFTMAI+GLGLLLFALLIGNMQNFLQALGRRRLE+SLRRRDVEQWMSHRRLPEELRR++RE+ERYNWAATRGV+E MLLENLPEDLQRDIRRHLFKFV KVRIF+LMD+P+LDA+ ERL+QKTYIKGS++L G L++KMVFIVRGK+ESVGE+ I PLSEGDVCGE+LLTWCLEHSSVN+DGK+IR PG +LLSNR+ RCLTNVEAF LRAADLE VTSLFSRFLRNPRVQGA+RYESPYWR LAAT IQVAWRYRKKRLNRA T S
Sbjct: 20 SENNQDSQFQALFSRTQSASIAIPMNSIESYESTN-LVGHTGPLRNERKIPFIQMSGPLYISRKPENSFHPNQSVAGRKMVESKAEKFPSFNGVDEKDWSDNNYVGKNEHLLRSGQLGMCNDPYCTTCPTYYNFKADQEKNSKASGIFDTK-----------FHNVLYGDAKGWARRLMSFLSSYVPGVMNPHAKVVQQWNQFFVISCLMAVFIDPLFFFLLSVQKDNKCIVINRPATKAFVVLRSMTDFIYLLNMLLQFRLAYIAPESRVVGAGELVDHPKKIAVNYLSRYFFLDLFVVLPLPQIMILLVLPKHLGSSGANFAKNLLRTAILIQYLPRLYRFLPFLAGQSPSGFIFESAWANFVINLLTFMLSGHIVGSCWYLLGLQRVNQCLRNACHDSNIKNCEEFIDCGYGHTSTR--AELPSWKNNTN---ASACFSEDGFPYGIYIQTVNLTTERSIITRYVYSLFWGFQQISTLAGNQIPSYFVWEVLFTMAIVGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEELRRKVREAERYNWAATRGVNEEMLLENLPEDLQRDIRRHLFKFVKKVRIFALMDDPILDAICERLRQKTYIKGSKVLSRGSLIEKMVFIVRGKMESVGENGIIDPLSEGDVCGEELLTWCLEHSSVNRDGKKIRIPGQRLLSNRIVRCLTNVEAFSLRAADLEAVTSLFSRFLRNPRVQGAIRYESPYWRSLAATHIQVAWRYRKKRLNRADTSQS 766
BLAST of XM_017401365.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061FQZ4 ((Cyclic nucleotide-binding transporter 1 isoform 1 {ECO:0000313|EMBL:EOY19695.1}))
HSP 1 Score: 1055.82 bits (2729), Expect = 0.000e+0
Identity = 532/764 (69.63%), Postives = 616/764 (80.63%), Query Frame = 0
Match: A0A061FQZ4 ((Cyclic nucleotide-binding transporter 1 isoform 1 {ECO:0000313|EMBL:EOY19695.1}))
HSP 1 Score: 1055.82 bits (2729), Expect = 0.000e+0
Identity = 532/764 (69.63%), Postives = 616/764 (80.63%), Query Frame = 0
Query: 13 TNGNEKPKSRSSTNGMRSASISIPMYSLDCSDTENSFSGRSGPLCTERKISYTQMSGPLYANLKNDNCFQDTQGAIGSRATEATLEKYPSVNGLVQIDWPHNNHVVTNENLLSSGQLGMCNDPYCTTCPTYFE---GQRKNKKVSSISDQKKLPYINYQQFPIPTIKQGDAKGWAWRMFFSLYRCIPGVMNPHAKIVQYWNKFFVISCLFAVFLDPLFFFLLSVKKEHKCIVFNETMTKVLITLRSLTDFIYFLHVLLQFRLAYVAPESRVVGSGDLVDRPRKIALNYLYGHFLIDFFVVLPLPQIIIWLVLKKFKGSSGANYAKNFLRAAILVQYIPRLYRILPMLAGQTASGFIFESAWANFVINLLTFVLSGHVVGSCWYLFGLQRVNECLRNACDEHW---CIKFIDCGQGNENERFRDNLESWKNWTNNATASACFGEGSFPYGIYVQTVNLTTESSLITRYIYSLFWGFQQISTLAGNLTPSFYVGEVLFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLELSLRRRDVEQWMSHRRLPEELRRQIRESERYNWAATRGVDESMLLENLPEDLQRDIRRHLFKFVNKVRIFSLMDEPVLDAMRERLKQKTYIKGSRILVPGDLVDKMVFIVRGKLESVGEDKNIVPLSEGDVCGEDLLTWCLEHSSVNKDGKRIRSPGHKLLSNRMARCLTNVEAFILRAADLEEVTSLFSRFLRNPRVQGALRYESPYWRCLAATRIQVAWRYRKKRLNRATTVSS 770
+ N+ + ++ + +SASISIPM S++ ++ N G +GPL ERKI + QMSGPLY + K +N F Q G + E+ EK+PS NG+ + DW NN+V NE+LL SGQLGMCNDPYCTTCPTY+ Q KN K S I D K + GDAKGWA R+ L +PGVMNPHA +VQ WN+FFVISCL AVF+DPLFFFLLSV+K++KCIV N+ TK + LRS+TDFIY L++LLQFRLAY+APESRVVG+G+LVD P+KIA+NYL +F +D FVVLPLPQI+I LVL K+ GSSGAN+AKN LR AIL+QY+PRLYR LP LAGQ+ SGFIFESAWANFVINLLTF+LSGHVVGSCWYLFGLQRVN+CLRNAC + C +FIDCG G+ + R L SWKN NA ASACF E FPYGIY+QTVNLTTE S+ITRY+YSLFWGFQQISTLAGN TPS++V EVLFTMAI+GLGLLLFALLIGNMQNFLQALGRRRLE+SLRRRDVEQWMSHRRLPEELRR++RE+ERYNWAATRGV+E ML ENLPEDLQRDIRRHLFKFV KVRIF+LMD+P+LDA+ ERL+QKTYIKGS++L G L++KMVFIVRGK+ESVGE+ I PL EGDVCGE+LLTWCLEHSSVN+DGK+IR PG +LLSNR+ RCLTNVEAF LRAADLEEVT LFSRFLRNPRVQGA+RYES YWR LAAT IQVAWRYRKKRLNRA T S
Sbjct: 20 SENNQDSQFQALFSRTQSASISIPMNSIESYESTN-LVGHTGPLRNERKIPFIQMSGPLYISRKPENSFHPNQSVAGHKMVESKAEKFPSFNGVDEKDWSDNNYVGKNEHLLRSGQLGMCNDPYCTTCPTYYNFKADQEKNSKASGIFDTK-----------FHNVLYGDAKGWARRLMSFLSSYVPGVMNPHATVVQQWNQFFVISCLMAVFIDPLFFFLLSVQKDNKCIVINQPATKAFVVLRSMTDFIYLLNMLLQFRLAYIAPESRVVGAGELVDHPKKIAVNYLSRYFFLDLFVVLPLPQIMILLVLPKYLGSSGANFAKNVLRTAILIQYLPRLYRFLPFLAGQSPSGFIFESAWANFVINLLTFMLSGHVVGSCWYLFGLQRVNQCLRNACHDSNIVNCEEFIDCGYGHTSNR--TELPSWKN---NANASACFSEDGFPYGIYIQTVNLTTERSIITRYVYSLFWGFQQISTLAGNQTPSYFVWEVLFTMAIVGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEELRRKVREAERYNWAATRGVNEEMLFENLPEDLQRDIRRHLFKFVKKVRIFALMDDPILDAICERLRQKTYIKGSKVLSRGSLIEKMVFIVRGKMESVGENGVIDPLCEGDVCGEELLTWCLEHSSVNRDGKKIRIPGQRLLSNRIVRCLTNVEAFSLRAADLEEVTCLFSRFLRNPRVQGAIRYESRYWRSLAATHIQVAWRYRKKRLNRADTSQS 766
BLAST of XM_017401365.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TM57 ((probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X1 {ECO:0000313|RefSeq:XP_011086974.1}))
HSP 1 Score: 1051.58 bits (2718), Expect = 0.000e+0
Identity = 504/785 (64.20%), Postives = 617/785 (78.60%), Query Frame = 0
Match: A0A6I9TM57 ((probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X1 {ECO:0000313|RefSeq:XP_011086974.1}))
HSP 1 Score: 1051.58 bits (2718), Expect = 0.000e+0
Identity = 504/785 (64.20%), Postives = 617/785 (78.60%), Query Frame = 0
Query: 1 MDASDKAQ------EYMKTNGNEKPKSRSSTNGMRSASISIPMYSLDCSDTENSFSGRSGPLCTERK-ISYTQMSGPLYANLKNDNCFQDTQGAIGSRATEATLEKYPSVNGLVQIDWPHNNHVVTNENLLSSGQLGMCNDPYCTTCPTYFE--GQRKNKKVSSISDQKKLPYINYQQFPIPTIKQGDAKGWAWRMFFSLYRCIPGVMNPHAKIVQYWNKFFVISCLFAVFLDPLFFFLLSVKKEHKCIVFNETMTKVLITLRSLTDFIYFLHVLLQFRLAYVAPESRVVGSGDLVDRPRKIALNYLYGHFLIDFFVVLPLPQIIIWLVLKKFKGSSGANYAKNFLRAAILVQYIPRLYRILPMLAGQTASGFIFESAWANFVINLLTFVLSGHVVGSCWYLFGLQRVNECLRNACDEH---WCIKFIDCGQGNENERFRDNLESWKNWTNNATASACFGEGSFPYGIYVQTVNLTTESSLITRYIYSLFWGFQQISTLAGNLTPSFYVGEVLFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLELSLRRRDVEQWMSHRRLPEELRRQIRESERYNWAATRGVDESMLLENLPEDLQRDIRRHLFKFVNKVRIFSLMDEPVLDAMRERLKQKTYIKGSRILVPGDLVDKMVFIVRGKLESVGEDKNIVPLSEGDVCGEDLLTWCLEHSSVNKDGKRIRSPGHKLLSNRMARCLTNVEAFILRAADLEEVTSLFSRFLRNPRVQGALRYESPYWRCLAATRIQVAWRYRKKRLNRATTVSSTYN 773
MDAS++ + Y + + SRS + RSAS+SIPM SLD S TE++ G +GPL ER+ ++ QMSGPLY ++ FQ + A+ + E +E+YPS++ DWP +++ NE+LL SGQLGMCNDPYCTTCPTY++ G++K+ + S I D K + GDAKGWA RMF + IPGVMNPHAK+VQ WNKFFVISC+FAV +DPLFFFLL+V++++KCIV N +T L+ LRS+TDFIY H+LLQFRLAYVAPES V G+GDLVD P++IA +Y +G+F++DFF+VLPLPQIII ++L G+SGANYAKN L+AAIL+QYIPRL R LP++AG + +GFIFES+W+NF +NL TFVL+GHVVGSCWYLFGLQRVN C R+AC C++FIDCG GN F + +WK W +N A+ACF + F +GIY VNLTT SL+T+Y+YS FWGFQQISTLAGN PS++V EVLFTMAIIG+GLLLFALLIGNMQNFLQALGRRRLE+SLRRRDVEQWMSHRRLPE+LRRQ+R+SER+NWAATRGV+E ML+ENLPEDLQRDIRRHLFKFV KVRIF L+DEP++DA+ ERL+ KTYIKGS+IL G LVDKMVFI+RGK+ES+GED +VPLSEGD CGE+LLTWCLEHSS+NKDGKRIR PGH+LLSNR+ RC+TNVEAF+LRA DLEEVTSLF+RFLR+PRVQGA+RYESPYWR +AA RIQVAWRYRKKR+ RA + S +N
Sbjct: 1 MDASERDEIPMLSATYFQADDPNDSTSRSFSTRTRSASMSIPMTSLDSSGTEHNLVGFTGPLRNERRSTTFVQMSGPLYVKHNHEFIFQRPEDALQKKTPEPKIERYPSIDRAENNDWPLSDYAGKNEHLLKSGQLGMCNDPYCTTCPTYYDVKGRQKHARTSEIFDAK-----------FHNMLYGDAKGWAKRMFSFMLPYIPGVMNPHAKVVQKWNKFFVISCIFAVIIDPLFFFLLNVQQDNKCIVLNWPLTTTLVVLRSMTDFIYVFHILLQFRLAYVAPESTVTGAGDLVDDPKEIARHYFFGYFILDFFIVLPLPQIIILMILPDSMGASGANYAKNLLQAAILIQYIPRLCRFLPLVAGFSPTGFIFESSWSNFFVNLFTFVLAGHVVGSCWYLFGLQRVNHCFRDACRNSNITMCMEFIDCGHGNYYGEF-EKYPAWKLWKSNENATACFKKDGFDFGIYETAVNLTTRRSLVTKYVYSFFWGFQQISTLAGNQVPSYFVYEVLFTMAIIGIGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEQLRRQVRDSERFNWAATRGVNEEMLMENLPEDLQRDIRRHLFKFVKKVRIFQLLDEPIMDAICERLRTKTYIKGSKILFRGGLVDKMVFIIRGKMESIGEDMIVVPLSEGDACGEELLTWCLEHSSINKDGKRIRIPGHRLLSNRLVRCVTNVEAFVLRAVDLEEVTSLFARFLRSPRVQGAIRYESPYWRGIAARRIQVAWRYRKKRMGRADSSSPPHN 773
BLAST of XM_017401365.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1B084 ((probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X1 {ECO:0000313|RefSeq:XP_021292072.1, ECO:0000313|RefSeq:XP_021292073.1}))
HSP 1 Score: 1051.2 bits (2717), Expect = 0.000e+0
Identity = 532/768 (69.27%), Postives = 616/768 (80.21%), Query Frame = 0
Match: A0A6J1B084 ((probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X1 {ECO:0000313|RefSeq:XP_021292072.1, ECO:0000313|RefSeq:XP_021292073.1}))
HSP 1 Score: 1051.2 bits (2717), Expect = 0.000e+0
Identity = 532/768 (69.27%), Postives = 616/768 (80.21%), Query Frame = 0
Query: 13 TNGNEKPKSRSSTNGMRSASISIPMYSLDCSDTENSFSGRSGPLCTERKISYTQMSGPLYANLKNDNCFQDTQGAIGSRATEATLEKYPSVNGLVQIDWPHNNHVVTNENLLSSGQLGMCNDPYCTTCPTYFE---GQRKNKKVSSISDQKKLPYINYQQFPIPTIKQGDAKGWAWRMFFSLYRCIPGVMNPHAKIVQYWNKFFVISCLFAVFLDPLFFFLLSVKKEHKCIVFNETMTKVLITLRSLTDFIYFLHVLLQFRLAYVAPESRVVGSGDLVDRPRKIALNYLYGHFLIDFFVVLPLPQIIIWLVLKKFKGSSGANYAKNFLRAAILVQYIPRLYRILPMLAGQTASGFIFESAWANFVINLLTFVLSGHVVGSCWYLFGLQRVNECLRNACDE---HWCIKFIDCGQGNENERFRDNLESWKNWTNNATASACFGEGSFPYGIYVQTVNLTTESSLITRYIYSLFWGFQQISTLAGNLTPSFYVGEVLFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLELSLRRRDVEQWMSHRRLPEELRRQIRESERYNWAATRGVDESMLLENLPEDLQRDIRRHLFKFVNKVRIFSLMDEPVLDAMRERLKQKTYIKGSRILVPGDLVDKMVFIVRGKLESVGEDKNIVPLSEGDVCGEDLLTWCLEHSSVNK----DGKRIRSPGHKLLSNRMARCLTNVEAFILRAADLEEVTSLFSRFLRNPRVQGALRYESPYWRCLAATRIQVAWRYRKKRLNRATTVSS 770
+ N+ + ++ + +SASI+IPM S++ ++ N G +GPL ERKI + QMSGPLY + K +N F Q G + E+ EK+PS NG+ + DW NN+V NE+LL SGQLGMCNDPYCTTCPTY+ Q KN K S I D K + GDAKGWA R+ L +PGVMNPHAK+VQ WN+FFVISCL AVF+DPLFFFLLSV+K++KCIV N TK + LRS+TDFIY L++LLQFRLAY+APESRVVG+G+LVD P+KIA+NYL +F +D FVVLPLPQI+I LVL K GSSGAN+AKN LR AIL+QY+PRLYR LP LAGQ+ SGFIFESAWANFVINLLTF+LSGH+VGSCWYL GLQRVN+CLRNAC + C +FIDCG G+ + R L SWKN TN ASACF E FPYGIY+QTVNLTTE S+ITRY+YSLFWGFQQISTLAGN PS++V EVLFTMAI+GLGLLLFALLIGNMQNFLQALGRRRLE+SLRRRDVEQWMSHRRLPEELRR++RE+ERYNWAATRGV+E MLLENLPEDLQRDIRRHLFKFV KVRIF+LMD+P+LDA+ ERL+QKTYIKGS++L G L++KMVFIVRGK+ESVGE+ I PLSEGDVCGE+LLTWCLEHSSVN+ DGK+IR PG +LLSNR+ RCLTNVEAF LRAADLE VTSLFSRFLRNPRVQGA+RYESPYWR LAAT IQVAWRYRKKRLNRA T S
Sbjct: 20 SENNQDSQFQALFSRTQSASIAIPMNSIESYESTN-LVGHTGPLRNERKIPFIQMSGPLYISRKPENSFHPNQSVAGRKMVESKAEKFPSFNGVDEKDWSDNNYVGKNEHLLRSGQLGMCNDPYCTTCPTYYNFKADQEKNSKASGIFDTK-----------FHNVLYGDAKGWARRLMSFLSSYVPGVMNPHAKVVQQWNQFFVISCLMAVFIDPLFFFLLSVQKDNKCIVINRPATKAFVVLRSMTDFIYLLNMLLQFRLAYIAPESRVVGAGELVDHPKKIAVNYLSRYFFLDLFVVLPLPQIMILLVLPKHLGSSGANFAKNLLRTAILIQYLPRLYRFLPFLAGQSPSGFIFESAWANFVINLLTFMLSGHIVGSCWYLLGLQRVNQCLRNACHDSNIKNCEEFIDCGYGHTSTR--AELPSWKNNTN---ASACFSEDGFPYGIYIQTVNLTTERSIITRYVYSLFWGFQQISTLAGNQIPSYFVWEVLFTMAIVGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEELRRKVREAERYNWAATRGVNEEMLLENLPEDLQRDIRRHLFKFVKKVRIFALMDDPILDAICERLRQKTYIKGSKVLSRGSLIEKMVFIVRGKMESVGENGIIDPLSEGDVCGEELLTWCLEHSSVNRVSIADGKKIRIPGQRLLSNRIVRCLTNVEAFSLRAADLEAVTSLFSRFLRNPRVQGAIRYESPYWRSLAATHIQVAWRYRKKRLNRADTSQS 770
BLAST of XM_017401365.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061FSR8 ((Cyclic nucleotide-binding transporter 1 isoform 2 {ECO:0000313|EMBL:EOY19692.1}))
HSP 1 Score: 1050.04 bits (2714), Expect = 0.000e+0
Identity = 532/768 (69.27%), Postives = 616/768 (80.21%), Query Frame = 0
Match: A0A061FSR8 ((Cyclic nucleotide-binding transporter 1 isoform 2 {ECO:0000313|EMBL:EOY19692.1}))
HSP 1 Score: 1050.04 bits (2714), Expect = 0.000e+0
Identity = 532/768 (69.27%), Postives = 616/768 (80.21%), Query Frame = 0
Query: 13 TNGNEKPKSRSSTNGMRSASISIPMYSLDCSDTENSFSGRSGPLCTERKISYTQMSGPLYANLKNDNCFQDTQGAIGSRATEATLEKYPSVNGLVQIDWPHNNHVVTNENLLSSGQLGMCNDPYCTTCPTYFE---GQRKNKKVSSISDQKKLPYINYQQFPIPTIKQGDAKGWAWRMFFSLYRCIPGVMNPHAKIVQYWNKFFVISCLFAVFLDPLFFFLLSVKKEHKCIVFNETMTKVLITLRSLTDFIYFLHVLLQFRLAYVAPESRVVGSGDLVDRPRKIALNYLYGHFLIDFFVVLPLPQIIIWLVLKKFKGSSGANYAKNFLRAAILVQYIPRLYRILPMLAGQTASGFIFESAWANFVINLLTFVLSGHVVGSCWYLFGLQRVNECLRNACDEHW---CIKFIDCGQGNENERFRDNLESWKNWTNNATASACFGEGSFPYGIYVQTVNLTTESSLITRYIYSLFWGFQQISTLAGNLTPSFYVGEVLFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLELSLRRRDVEQWMSHRRLPEELRRQIRESERYNWAATRGVDESMLLENLPEDLQRDIRRHLFKFVNKVRIFSLMDEPVLDAMRERLKQKTYIKGSRILVPGDLVDKMVFIVRGKLESVGEDKNIVPLSEGDVCGEDLLTWCLEHSSVNK----DGKRIRSPGHKLLSNRMARCLTNVEAFILRAADLEEVTSLFSRFLRNPRVQGALRYESPYWRCLAATRIQVAWRYRKKRLNRATTVSS 770
+ N+ + ++ + +SASISIPM S++ ++ N G +GPL ERKI + QMSGPLY + K +N F Q G + E+ EK+PS NG+ + DW NN+V NE+LL SGQLGMCNDPYCTTCPTY+ Q KN K S I D K + GDAKGWA R+ L +PGVMNPHA +VQ WN+FFVISCL AVF+DPLFFFLLSV+K++KCIV N+ TK + LRS+TDFIY L++LLQFRLAY+APESRVVG+G+LVD P+KIA+NYL +F +D FVVLPLPQI+I LVL K+ GSSGAN+AKN LR AIL+QY+PRLYR LP LAGQ+ SGFIFESAWANFVINLLTF+LSGHVVGSCWYLFGLQRVN+CLRNAC + C +FIDCG G+ + R L SWKN NA ASACF E FPYGIY+QTVNLTTE S+ITRY+YSLFWGFQQISTLAGN TPS++V EVLFTMAI+GLGLLLFALLIGNMQNFLQALGRRRLE+SLRRRDVEQWMSHRRLPEELRR++RE+ERYNWAATRGV+E ML ENLPEDLQRDIRRHLFKFV KVRIF+LMD+P+LDA+ ERL+QKTYIKGS++L G L++KMVFIVRGK+ESVGE+ I PL EGDVCGE+LLTWCLEHSSVN+ DGK+IR PG +LLSNR+ RCLTNVEAF LRAADLEEVT LFSRFLRNPRVQGA+RYES YWR LAAT IQVAWRYRKKRLNRA T S
Sbjct: 20 SENNQDSQFQALFSRTQSASISIPMNSIESYESTN-LVGHTGPLRNERKIPFIQMSGPLYISRKPENSFHPNQSVAGHKMVESKAEKFPSFNGVDEKDWSDNNYVGKNEHLLRSGQLGMCNDPYCTTCPTYYNFKADQEKNSKASGIFDTK-----------FHNVLYGDAKGWARRLMSFLSSYVPGVMNPHATVVQQWNQFFVISCLMAVFIDPLFFFLLSVQKDNKCIVINQPATKAFVVLRSMTDFIYLLNMLLQFRLAYIAPESRVVGAGELVDHPKKIAVNYLSRYFFLDLFVVLPLPQIMILLVLPKYLGSSGANFAKNVLRTAILIQYLPRLYRFLPFLAGQSPSGFIFESAWANFVINLLTFMLSGHVVGSCWYLFGLQRVNQCLRNACHDSNIVNCEEFIDCGYGHTSNR--TELPSWKN---NANASACFSEDGFPYGIYIQTVNLTTERSIITRYVYSLFWGFQQISTLAGNQTPSYFVWEVLFTMAIVGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEELRRKVREAERYNWAATRGVNEEMLFENLPEDLQRDIRRHLFKFVKKVRIFALMDDPILDAICERLRQKTYIKGSKVLSRGSLIEKMVFIVRGKMESVGENGVIDPLCEGDVCGEELLTWCLEHSSVNRVSVADGKKIRIPGQRLLSNRIVRCLTNVEAFSLRAADLEEVTCLFSRFLRNPRVQGAIRYESRYWRSLAATHIQVAWRYRKKRLNRADTSQS 770
BLAST of XM_017401365.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314LG12 ((Putative cyclic nucleotide-gated ion channel 20, chloroplastic {ECO:0000313|EMBL:OIT39514.1}))
HSP 1 Score: 1046.96 bits (2706), Expect = 0.000e+0
Identity = 517/768 (67.32%), Postives = 618/768 (80.47%), Query Frame = 0
Match: A0A314LG12 ((Putative cyclic nucleotide-gated ion channel 20, chloroplastic {ECO:0000313|EMBL:OIT39514.1}))
HSP 1 Score: 1046.96 bits (2706), Expect = 0.000e+0
Identity = 517/768 (67.32%), Postives = 618/768 (80.47%), Query Frame = 0
Query: 10 YMKTNGNEKPKSRSSTNGMRSASISIPMYSLDCSDTENSFSGRSGPLCTERKISYTQMSGPLYANLKNDNCFQDTQGAIGSRATEATLEKYPSVNGLVQIDWPHNNHVVTNENLLSSGQLGMCNDPYCTTCPTYF--EGQRKNKKVSSISDQKKLPYINYQQFPIPTIKQGDAKGWAWRMFFSLYRCIPGVMNPHAKIVQYWNKFFVISCLFAVFLDPLFFFLLSVKKEHKCIVFNETMTKVLITLRSLTDFIYFLHVLLQFRLAYVAPESRVVGSGDLVDRPRKIALNYLYGHFLIDFFVVLPLPQIIIWLVLKKFKGSSGANYAKNFLRAAILVQYIPRLYRILPMLAGQTASGFIFESAWANFVINLLTFVLSGHVVGSCWYLFGLQRVNECLRNACDEH---WCIKFIDCGQGNENERFRDNLESWKNWTNNATASACFGEGSFPYGIYVQTVNLTTESSLITRYIYSLFWGFQQISTLAGNLTPSFYVGEVLFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLELSLRRRDVEQWMSHRRLPEELRRQIRESERYNWAATRGVDESMLLENLPEDLQRDIRRHLFKFVNKVRIFSLMDEPVLDAMRERLKQKTYIKGSRILVPGDLVDKMVFIVRGKLESVGEDKNIVPLSEGDVCGEDLLTWCLEHSSVNKDGKRIRSPGHKLLSNRMARCLTNVEAFILRAADLEEVTSLFSRFLRNPRVQGALRYESPYWRCLAATRIQVAWRYRKKRLNRATTVSSTY 772
+ +++ ++ ++R T RSAS+S+PM S+D + ++SF G +GPL +ER+ S MSGPLY + K +N F+ T A+ + T T EKYPS+ + WP+N++ NE+LL SGQLGMC+DPYCTTCPTY+ + ++KN K S I D + + GDAKGWA R L+ IPGVMNPHAKIVQ WNKFFVISCLFAVF+DPLFFFLL V++ +KCIV N MT ++ LRS+TD +Y +H+LLQFRLAYVAPESRVVG+GDLVD P+KIA+NYL G+F++DFFVVLPLPQIII LVL K GSSGANYAKN LRAAIL+QYIPRLYR LP+LAGQ+ SGFIFESAWANFVINLLTFVLS HVVGSCWYLFGLQRVN+CLR+AC C +FIDCG G + +FR + +W W NN+ A ACF G F YGIY Q VNLT E S+ TRY+YSLFWGFQQISTLAGN PS++V EV+FTMAIIG+GLLLFALLIGNMQNFLQ+L RRRLE+SLRRRDVEQWMSHRRLPEELRR++RE+ERYNWAATRGV+E MLLENLPEDL RDIRRHLF F+ KVRIF+L+DEP++DA+ ERL+QKTYI GS++L G LVDKMVFI+RGK+ES+GED N+ LSEGD CGE+LLTWCLEHSS+N+DGK+IR PGH+LLSNR+ RCLTNVEAFILRAADLEEVT+LF+RFLR+PRVQGA+RYESPYWR LAA RIQVAWRYRKKR +RA + S +
Sbjct: 16 FPQSDESDGFQNRRFTYRTRSASLSMPMSSMDSFENDSSFVGYTGPLRSERRTSLVHMSGPLYISRKPENSFRPTPAAVVHKPTLPTTEKYPSIGSAERNGWPNNDYTGKNEHLLKSGQLGMCSDPYCTTCPTYYHLKARQKNSKSSDIIDHR-----------FHNMLYGDAKGWAKRTCSFLHPYIPGVMNPHAKIVQKWNKFFVISCLFAVFIDPLFFFLLYVQQGNKCIVLNWPMTTTIVILRSITDIVYLIHILLQFRLAYVAPESRVVGAGDLVDHPKKIAINYLSGYFVLDFFVVLPLPQIIILLVLPKSIGSSGANYAKNLLRAAILLQYIPRLYRFLPLLAGQSPSGFIFESAWANFVINLLTFVLSSHVVGSCWYLFGLQRVNQCLRDACRSSNIARCTEFIDCGHGTDYRKFRLD-TTWDQWKNNSDAVACFTNGGFDYGIYEQAVNLTAEGSVATRYVYSLFWGFQQISTLAGNQIPSYFVWEVIFTMAIIGMGLLLFALLIGNMQNFLQSLDRRRLEMSLRRRDVEQWMSHRRLPEELRRRVREAERYNWAATRGVNEEMLLENLPEDLLRDIRRHLFNFIKKVRIFALLDEPIIDAICERLRQKTYIAGSKVLYRGGLVDKMVFIIRGKMESIGEDGNVASLSEGDACGEELLTWCLEHSSINRDGKKIRIPGHRLLSNRLVRCLTNVEAFILRAADLEEVTNLFARFLRSPRVQGAIRYESPYWRGLAARRIQVAWRYRKKRQSRADSSSPQH 771
BLAST of XM_017401365.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BY96 ((Putative Cyclic nucleotide-binding transporter 1 isoform 1 {ECO:0000313|EMBL:MPA73424.1}))
HSP 1 Score: 1045.42 bits (2702), Expect = 0.000e+0
Identity = 546/774 (70.54%), Postives = 627/774 (81.01%), Query Frame = 0
Match: A0A5B7BY96 ((Putative Cyclic nucleotide-binding transporter 1 isoform 1 {ECO:0000313|EMBL:MPA73424.1}))
HSP 1 Score: 1045.42 bits (2702), Expect = 0.000e+0
Identity = 546/774 (70.54%), Postives = 627/774 (81.01%), Query Frame = 0
Query: 7 AQEYMKTNGNEKPKSRSSTNGMRSASISIPMYSLDCSDTENSFSGRSGPLCTERKISYTQMSGPLYANLKNDNCFQDTQGAIGSRATEATLEKYPSVNGLVQIDWPHNNHVVTNENLLSSGQLGMCNDPYCTTCPTY--FEGQRKNKKVSSISDQKKLPYINYQQFPIPTIKQGDAKGWAWRMFFSLYRCIPGVMNPHAKIVQYWNKFFVISCLFAVFLDPLFFFLLSVKKEHKCIVFNETMTKVLITLRSLTDFIYFLHVLLQFRLAYVAPESRVVGSGDLVDRPRKIALNYLYGHFLIDFFVVLPLPQIIIWLVLKKFKGSSGANYAKNFLRAAILVQYIPRLYRILPMLAGQTASGFIFESAWANFVINLLTFVLSGHVVGSCWYLFGLQRVNECLRNACDEHW---CIKFIDCGQGNENERFRDNLESWKNWTNNATASACFGEGSFPYGIYVQTVNLTTESSLITRYIYSLFWGFQQISTLAGNLTPSFYVGEVLFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLELSLRRRDVEQWMSHRRLPEELRRQIRESERYNWAATRGVDESMLLENLPEDLQRDIRRHLFKFVNKVRIFSLMDEPVLDAMRERLKQKTYIKGSRILVPGDLVDKMVFIVRGKLESVGEDKNIVPLSEGDVCGEDLLTWCLEHSSVNKDGKRIRSPGHKLLSNRMARCLTNVEAFILRAADLEEVTSLFSRFLRNPRVQGALRYESPYWRCLAATRIQVAWRYRKKRLNRATTVSSTYNHS 775
+ Y + + E + R ++ RSASISIPM S++ + EN+ G +GPL ER+ QMSGPLY + KNDN F+ TQGA G TE T+EKYPS NG+ Q DWP +N+ NE+LL SGQLG+CNDPYCTTCPTY F+ +KN K S I D K + GDAKGW R+F L++ IPGVMNPH K+VQ WNKFFVISCL A+FLDPLFFFLLSV+ EHKCIV N MT ++ RS+TDFIY L++LLQFRLAY+APESRVVG+GDLVD P+KIALNYL G+FLID FVVLPLPQIII LVL K SGAN AKN LRAA+LVQYIPRLYR LP+LAGQ+ SGFIFE+ WANFVINLLTFVLSGHVVGSCWYL GLQRVN+CLRNAC + C KFIDCG+ N E F+ + +W++WTNNA ASACFG+ F YGIY VNLTTE S+ITRY+YSLFWGFQQISTLAGN TPS++V EVLFTM IIGLGLLLFALLIG+MQNFLQALGRRRLE+SLRRRDVEQWMSHRRLPEELRRQ+RESERYNWAATRGV+E MLL NLPEDLQR+IRRHLF+FV KVRIF++MDEP+LDA+ ERL+QKTYIKGS+IL PGDL++KMVFIVRGK++S G D VPLSEGDVCGE+LLTWCLEHSSVNKDG++IR PG +LLSNR CLTNVEAF LRAAD+ EVTSLF+RFLRNPRVQGA+RYESPYWR LAATRIQVAWRYRKKRL+RA T +S +HS
Sbjct: 13 SDTYSQVDEREDSQFRRFSSRTRSASISIPMNSMESYENENNLVGHTGPLRNERRTPLIQMSGPLYISRKNDNLFRPTQGATGRSTTEPTVEKYPSFNGMDQNDWP-DNYAGKNEHLLKSGQLGICNDPYCTTCPTYYNFKEHQKNSKSSVIFDPK-----------FHNMLYGDAKGWVRRIFSFLHQYIPGVMNPHTKVVQLWNKFFVISCLVAIFLDPLFFFLLSVQLEHKCIVINWPMTTTIVVFRSMTDFIYLLNMLLQFRLAYIAPESRVVGAGDLVDHPKKIALNYLKGYFLIDLFVVLPLPQIIILLVLPKSLRFSGANNAKNLLRAAVLVQYIPRLYRFLPLLAGQSPSGFIFETGWANFVINLLTFVLSGHVVGSCWYLLGLQRVNQCLRNACHDSMMKNCTKFIDCGRNNI-EDFKSD-PTWRDWTNNANASACFGQDGFNYGIYEPAVNLTTEHSIITRYVYSLFWGFQQISTLAGNQTPSYFVWEVLFTMFIIGLGLLLFALLIGSMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEELRRQVRESERYNWAATRGVNEEMLLVNLPEDLQREIRRHLFRFVKKVRIFAMMDEPILDAICERLRQKTYIKGSKILYPGDLIEKMVFIVRGKMDS-GGDGITVPLSEGDVCGEELLTWCLEHSSVNKDGRKIRIPGPRLLSNRKVICLTNVEAFTLRAADIGEVTSLFARFLRNPRVQGAIRYESPYWRGLAATRIQVAWRYRKKRLSRADTANSQPDHS 771
BLAST of XM_017401365.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4TS71 (Cyclic nucleotide-binding domain-containing protein {ECO:0000259|PROSITE:PS50042})
HSP 1 Score: 1041.57 bits (2692), Expect = 0.000e+0
Identity = 504/743 (67.83%), Postives = 588/743 (79.14%), Query Frame = 0
Match: V4TS71 (Cyclic nucleotide-binding domain-containing protein {ECO:0000259|PROSITE:PS50042})
HSP 1 Score: 1041.57 bits (2692), Expect = 0.000e+0
Identity = 504/743 (67.83%), Postives = 588/743 (79.14%), Query Frame = 0
Query: 29 RSASISIPMYSLDCSDTENSFSGRSGPLCTERKISYTQMSGPLYANLKNDNCFQDTQGAIGSRATEATLEKYPSVNGLVQIDWPHNNHVVTNENLLSSGQLGMCNDPYCTTCPTYFEG-QRKNKKVSSISDQKKLPYINYQQFPIPTIKQGDAKGWAWRMFFSLYRCIPGVMNPHAKIVQYWNKFFVISCLFAVFLDPLFFFLLSVKKEHKCIVFNETMTKVLITLRSLTDFIYFLHVLLQFRLAYVAPESRVVGSGDLVDRPRKIALNYLYGHFLIDFFVVLPLPQIIIWLVLKKFKGSSGANYAKNFLRAAILVQYIPRLYRILPMLAGQTASGFIFESAWANFVINLLTFVLSGHVVGSCWYLFGLQRVNECLRNACDE---HWCIKFIDCGQGNENERFRDNLESWKNWTNNATASACFGEGSFPYGIYVQTVNLTTESSLITRYIYSLFWGFQQISTLAGNLTPSFYVGEVLFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLELSLRRRDVEQWMSHRRLPEELRRQIRESERYNWAATRGVDESMLLENLPEDLQRDIRRHLFKFVNKVRIFSLMDEPVLDAMRERLKQKTYIKGSRILVPGDLVDKMVFIVRGKLESVGEDKNIVPLSEGDVCGEDLLTWCLEHSSVNKDGKRIRSPGHKLLSNRMARCLTNVEAFILRAADLEEVTSLFSRFLRNPRVQGALRYESPYWRCLAATRIQVAWRYRKKRLNRATT 767
RSAS+SI M S D + E + G +GPL ER+ + QMSGPLY+N K D+ F+ QG G E EK+PS +G+ Q DW N + NE+LL SGQLGMCNDPYCTTCPTY++ Q K+ K S I D K GDAKGWA R SL R +PG+MNPH +IVQ W +FFVI+CL A+F+DPLFFFLLSV++ +KCIV N TK ++ +RS+TD IYFL++LLQFRLAYVAPESRVVG+G+LVD P+KIALNYL G+F IDFFV LPLPQIII LVL GSSGANYAKN LRAAIL+QYIPRLY+ LP+ AGQ+++GFIFESAWANF INL TF LSGH+VGS WYLFGLQRVN+CLR+AC C KF+DCG GN + + ++WK+W+ N AS CF + F YGIY Q V LTTE+S+ITRY+YSLFWGFQQISTLAGN TPS++VGEVLFTMAIIG+GLLLFA LIGNMQNFLQAL +RRL++SLRRRDVEQWM HRRLPE+LRRQ+RE+ERYNWAATRGV+E ML NLPEDLQR+IRRHLFKFV KVRIF+LMDEP+LDA+ ERL+QKTYI GS+IL G L++KMVFIVRGK+ES+GED V LSEGD CGE+LLTWCLEHSSVN+D KR R PG +LL NR RCLTNVEAF LRAAD+EEVTSLF+RFLR+PRVQGA+RYESPYWRC AA IQVAWRYRKKRLNRA T
Sbjct: 36 RSASMSITMNSTDSFEPEANLVGLTGPLRNERRTQFLQMSGPLYSNRKPDHIFRRNQGVTGVNLVETKAEKFPSFSGMDQNDWLDNRYEAKNEHLLRSGQLGMCNDPYCTTCPTYYKATQSKHSKSSGIFDPK-----------FHNALYGDAKGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQIIILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQD-QTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEEMLFANLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRKKRLNRADT 766
BLAST of XM_017401365.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2C3Z7 (Cyclic nucleotide-binding domain-containing protein {ECO:0000259|PROSITE:PS50042})
HSP 1 Score: 1035.79 bits (2677), Expect = 0.000e+0
Identity = 508/765 (66.41%), Postives = 617/765 (80.65%), Query Frame = 0
Match: A0A6N2C3Z7 (Cyclic nucleotide-binding domain-containing protein {ECO:0000259|PROSITE:PS50042})
HSP 1 Score: 1035.79 bits (2677), Expect = 0.000e+0
Identity = 508/765 (66.41%), Postives = 617/765 (80.65%), Query Frame = 0
Query: 10 YMKTNGNEKPKSRSSTNGMRSASISIPMYSLDCSDTENSFSGRSGPLCTERKISYTQMSGPLYANLKNDNCFQDTQGAIGSRATEATLEKYPSVNGLVQIDWPHNNHVVTNENLLSSGQLGMCNDPYCTTCPTYF--EGQRKNKKVSSISDQKKLPYINYQQFPIPTIKQGDAKGWAWRMFFSLYRCIPGVMNPHAKIVQYWNKFFVISCLFAVFLDPLFFFLLSVKKEHKCIVFNETMTKVLITLRSLTDFIYFLHVLLQFRLAYVAPESRVVGSGDLVDRPRKIALNYLYGHFLIDFFVVLPLPQIIIWLVLKKFKGSSGANYAKNFLRAAILVQYIPRLYRILPMLAGQTASGFIFESAWANFVINLLTFVLSGHVVGSCWYLFGLQRVNECLRNACDEHW---CIKFIDCGQGNENERFRDNLESWKNWTNNATASACFGEGSFPYGIYVQTVNLTTESSLITRYIYSLFWGFQQISTLAGNLTPSFYVGEVLFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLELSLRRRDVEQWMSHRRLPEELRRQIRESERYNWAATRGVDESMLLENLPEDLQRDIRRHLFKFVNKVRIFSLMDEPVLDAMRERLKQKTYIKGSRILVPGDLVDKMVFIVRGKLESVGEDKNIVPLSEGDVCGEDLLTWCLEHSSVNKDGKRIRSPGHKLLSNRMARCLTNVEAFILRAADLEEVTSLFSRFLRNPRVQGALRYESPYWRCLAATRIQVAWRYRKKRLNRATTVS 769
Y +++GN+ ++R ST RSAS+S+PM S+D + ++S+ G +GPL +ER+ S QMSGPLY + +N F+ T A+ ++T E+YPS++ + W +N++ NE+L SGQLGMCNDPYCTTCPTY+ + ++ N K S I D K + GDAKGWA R L+ IPGVMNPHAKIVQ WNKFFVISCLFAVF+DPLFFF L V+K +KCI+ + +T ++ LRS+TD IY +H+LLQFRLAYVAPESRVVG+GDLVD P+KIA+NYL G+F++DFF+VLPLPQIII L+L K SSGANYAKN LR AIL+QYIPRL R LP++AGQ+ SGFIFESAWANF INLLTFVLS HVVGSCWYLFGLQRVN+CLR+AC E C++FIDCG GN+ +FR + +W W NN+ A ACF G F YGIY Q VNLTTE S++TRY+YSLFWGFQQISTLAGN PS++ EVLFTMAIIG+GLLLFALLIGNMQNFLQ+L RRRLE+SLRRRDVEQWMSHRRLP ELRR+++E+ERYNWAATRGV+E MLLENLPEDLQRDIRRHLFKF+ KVRIF+L+DEP++DA+ ERL+QKTYI GS++L G LVDKMVFI+RGK+ES+GED N+ LSEGD CGE+LLTWCLEHSS+N+DGK++R PGH+LLSNR+ RCLTNVEAFILRA+DLEEVT+LF+RFLR+PRVQGALRYESPYWR LAA +IQVAWRYRKKR +R+ + S
Sbjct: 16 YPQSDGNDAFQNRRSTYRTRSASLSMPMSSIDSFENDSSYVGYTGPLRSERRTSLVQMSGPLYIGREPENSFRPTPAAVVHKSTLPPTERYPSISSAERNGWRNNDYTGKNEHLFKSGQLGMCNDPYCTTCPTYYHLKARQNNSKSSDIFDHK-----------FHNVLYGDAKGWAKRTCSFLHPYIPGVMNPHAKIVQKWNKFFVISCLFAVFIDPLFFFSLCVQKGNKCIMLSWPLTTTIVILRSITDIIYLMHILLQFRLAYVAPESRVVGAGDLVDHPKKIAINYLSGYFVVDFFIVLPLPQIIILLILPKSIASSGANYAKNLLRVAILLQYIPRLCRFLPLIAGQSPSGFIFESAWANFFINLLTFVLSSHVVGSCWYLFGLQRVNQCLRDACRESMIARCVEFIDCGHGNDYRKFRSD-TTWDQWKNNSDAVACFTNGGFDYGIYEQAVNLTTEGSIVTRYVYSLFWGFQQISTLAGNQVPSYFEWEVLFTMAIIGIGLLLFALLIGNMQNFLQSLDRRRLEMSLRRRDVEQWMSHRRLPVELRRRVQEAERYNWAATRGVNEEMLLENLPEDLQRDIRRHLFKFIKKVRIFALLDEPIIDAICERLRQKTYIAGSKVLYRGGLVDKMVFIIRGKMESIGEDGNVASLSEGDACGEELLTWCLEHSSINRDGKKVRIPGHRLLSNRLVRCLTNVEAFILRASDLEEVTNLFARFLRSPRVQGALRYESPYWRGLAARQIQVAWRYRKKRQSRSDSSS 768
BLAST of XM_017401365.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0IR14 ((Putative cyclic nucleotide-gated ion channel 20, chloroplastic-like {ECO:0000313|EMBL:JAP34980.1}))
HSP 1 Score: 1034.63 bits (2674), Expect = 0.000e+0
Identity = 509/775 (65.68%), Postives = 618/775 (79.74%), Query Frame = 0
Match: A0A0V0IR14 ((Putative cyclic nucleotide-gated ion channel 20, chloroplastic-like {ECO:0000313|EMBL:JAP34980.1}))
HSP 1 Score: 1034.63 bits (2674), Expect = 0.000e+0
Identity = 509/775 (65.68%), Postives = 618/775 (79.74%), Query Frame = 0
Query: 10 YMKTNGNEKPKSRSSTNGMRSASISIPMYSLDCSDTENSFSGRSGPLCTERKISYTQMSGPLYANLKNDNCFQDTQGAIGSRATEATLEKYPSVNGLVQIDWPHNNHVVTNENLLSSGQLGMCNDPYCTTCPTYF--EGQRKNKKVSSISDQKKLPYINYQQFPIPTIKQGDAKGWAWRMFFSLYRCIPGVMNPHAKIVQYWNKFFVISCLFAVFLDPLFFFLLSVKKEHKCIVFNETMTKVLITLRSLTDFIYFLHVLLQFRLAYVAPESRVVGSGDLVDRPRKIALNYLYGHFLIDFFVVLPLPQIIIWLVLKKFKGSSGANYAKNFLRAAILVQYIPRLYRILPMLAGQTASGFIFESAWANFVINLLTFVLSGHVVGSCWYLFGLQRVNECLRNACDEH---WCIKFIDCGQGNENERF-RDNLESWKNWTNNATASACFGEGSFPYGIYVQTVNLTTESSLITRYIYSLFWGFQQISTLAGNLTPSFYVGEVLFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLELSLRRRDVEQWMSHRRLPEELRRQIRESERYNWAATRGVDESMLLENLPEDLQRDIRRHLFKFVNKVRIFSLMDEPVLDAMRERLKQKTYIKGSRILVPGDLVDKMVFIVRGKLESVGEDKNIVPLSEGDVCGEDLLTWCLEHSSVNKDGKRIRSPGHKLLSNRMARCLTNVEAFILRAADLEEVTSLFSRFLRNPRVQGALRYESPYWRCLAATRIQVAWRYRKKRLNRATTVSSTYNHSPGN 778
Y +++GN+ ++R ST RSAS+S+PM S+D + ++S+ G +GPL +ER+ S QMSGPLY + +N F+ T ++ + T T EKYPS++ + W +N++ NE+L SGQLGMCNDPYCTTCPTY+ + ++ N K S I D K + GDAKGWA R + L+ IPG+MNPHAKIVQ WNK FVISCLFAVF+DPLFFFLL V+K +KCI+ N +T ++ LRS+TD IY +H+LLQFRLAYVAPES VVG+GDLVD P+KIA+NYL G+F++DFF+VLPLPQIII L+L K SSGANYAKN LR AIL+QYIPRL R LP++AGQ+ SGF+FESAWANF INLLTFVLS HVVGSCWYLFGLQRVN+CLR+AC E C++FIDCG GN+ + F RD +W W NN+ A ACF G F YGIY Q VNLTTE S++TRY+YSLFWGFQQISTLAGN PS++ EVLFTMAIIG+GLL FALLIGNMQNFLQ+L RRRLE+SLRRRDVEQWMSHRRLP ELRRQ++E+ERYNWAATRGV+E MLLENLPEDLQRDIRRHLFKF+ KVRIF+L+DEP++DA+ ERL+QKTYI GS++L G LVDKMVFI+RGK+ES+GED N+ LSEGD CGE+LLTWCLEHSS+N+DGK++R PGH+LLSNR+ RCLTNVEAF LRA+DLEEVT+LF+RFLR+PRVQGALRYESPYWR LAA RIQVAWRYRKKR +R + S + ++ N
Sbjct: 16 YPQSDGNDSFQNRRSTYRTRSASLSMPMSSMDSFENDSSYVGYTGPLRSERRTSLVQMSGPLYIGREPENSFRPTPASVVHKPTLPTTEKYPSISSAERNGWRNNDYTGKNEHLFKSGQLGMCNDPYCTTCPTYYHLKARQNNSKSSDIFDHK-----------FHNVLYGDAKGWAKRTYSFLHPYIPGIMNPHAKIVQKWNKCFVISCLFAVFIDPLFFFLLCVQKGNKCIMLNWPLTTTIVILRSITDIIYLMHILLQFRLAYVAPESMVVGAGDLVDHPKKIAINYLSGYFVVDFFIVLPLPQIIILLILPKSIASSGANYAKNLLRVAILLQYIPRLCRFLPLIAGQSPSGFVFESAWANFFINLLTFVLSSHVVGSCWYLFGLQRVNQCLRDACRESKIARCVEFIDCGHGNDYKNFWRD--PTWDQWKNNSDAVACFTNGGFDYGIYEQAVNLTTEGSVVTRYVYSLFWGFQQISTLAGNQVPSYFEWEVLFTMAIIGMGLLFFALLIGNMQNFLQSLDRRRLEMSLRRRDVEQWMSHRRLPVELRRQVQEAERYNWAATRGVNEEMLLENLPEDLQRDIRRHLFKFIKKVRIFALLDEPIIDAICERLRQKTYIAGSKVLYRGGLVDKMVFIIRGKMESIGEDGNVASLSEGDACGEELLTWCLEHSSINRDGKKVRIPGHRLLSNRLVRCLTNVEAFTLRASDLEEVTNLFARFLRSPRVQGALRYESPYWRGLAARRIQVAWRYRKKRQSRTDSSSPQHXYTTIN 777
| Match Name | Stats | Description |
|---|---|---|
| A0A6J1AYW7 | E-Value: 0.000e+0, PID: 69.63 | (probable cyclic nucleotide-gated ion channel 20, ... [more] |
| A0A061FQZ4 | E-Value: 0.000e+0, PID: 69.63 | (Cyclic nucleotide-binding transporter 1 isoform 1... [more] |
| A0A6I9TM57 | E-Value: 0.000e+0, PID: 64.20 | (probable cyclic nucleotide-gated ion channel 20, ... [more] |
| A0A6J1B084 | E-Value: 0.000e+0, PID: 69.27 | (probable cyclic nucleotide-gated ion channel 20, ... [more] |
| A0A061FSR8 | E-Value: 0.000e+0, PID: 69.27 | (Cyclic nucleotide-binding transporter 1 isoform 2... [more] |
| A0A314LG12 | E-Value: 0.000e+0, PID: 67.32 | (Putative cyclic nucleotide-gated ion channel 20, ... [more] |
| A0A5B7BY96 | E-Value: 0.000e+0, PID: 70.54 | (Putative Cyclic nucleotide-binding transporter 1 ... [more] |
| V4TS71 | E-Value: 0.000e+0, PID: 67.83 | Cyclic nucleotide-binding domain-containing protei... [more] |
| A0A6N2C3Z7 | E-Value: 0.000e+0, PID: 66.41 | Cyclic nucleotide-binding domain-containing protei... [more] |
| A0A0V0IR14 | E-Value: 0.000e+0, PID: 65.68 | (Putative cyclic nucleotide-gated ion channel 20, ... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |