XM_017399554.1

Resource Type: 
Polypeptide
Name: 
XM_017399554.1
Identifier: 
XM_017399554.1-protein
Sequence: 
MAENNKYRRPKKQPMLDTDPSTLKIPSTKKKNFTSATFRGLGCAVSPQVA
VPAVIKTSASWDAKKVKKKKQRSLQQKRSKGPFQGVAMAHGNSLAASSTC
VVDPDVWCGPGIGFGADAAASVDCVVSRRPASGRGKVDGVRMNQRERSSF
GGRRRVNHEAISFFDADLDQGMSRPRLSVFSSRPQRHVRHPSPEGLAEIV
MLQSSLLMGGRPSRLDRYRDLRLDVDSMSYEELLDLGDRIGYVSTGLRED
EIVRSLRKTKLSPVDELSSDISTDRKCSICQEEYTAEDEMGKLDCRHSFH
IQCIKSWLAKKNACPICKTAIASQQ
Sequence Length: 
325
Sequence Checksum: 
934b312f5f660a95fa4984dc6751fcef
View location in JBrowse: 
DCARv2_Chr6:571838..573925-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017399554.1, derives from mRNA, XM_017399554.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017399554.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017399554.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BA08 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})

HSP 1 Score: 423.32 bits (1087), Expect = 9.228e-147
Identity = 229/349 (65.62%), Postives = 270/349 (77.36%), Query Frame = 0
 
Query:    1 MAENNKYRRPKKQPMLDTDPSTLKIPST------------------------KKKNFTSATFRGLGCAVSPQVAVPAVIKTSASWDAKKVKKKKQRSLQQKRSKGPFQGVAMAHGNSLAASSTCVVDPDVWCGPGIGFGADAAASVDCVVSRRPASGRGKVDGVRMNQRERSSFGGRRRVNHEAISFFDADLDQGMSRPRLSVFSSRPQRHVRHPSPEGLAEIVMLQSSLLMGGRPSRLDRYRDLRLDVDSMSYEELLDLGDRIGYVSTGLREDEIVRSLRKTKLSPVDELSSDISTDRKCSICQEEYTAEDEMGKLDCRHSFHIQCIKSWLAKKNACPICKTAIASQQ 325
            MAENN++R+PK QP +DTDP+ LK+PS                         KKK+FT  TFRGLGCA S QV+VP VI++SA+W+AKKV+KKK + L++K++KGPF  VAM HGNS A+SST VVDPD WCGPG  F  + A SV   VSRRP SGRGKVD  +MNQRER+ FGGR   N EAISF D + +  M RPRL VF+S   RHV++ S EGLAEIVMLQSS LM GR + LD+YRDLRLDVDSMSYEELLDLGDRIGYVSTGLREDEI+RSLRKTKLSP+DELSSDI T+ KCSICQEEY A++EMGKLDC H++H++CI++WL KKNACPICKTA+ASQQ
Sbjct:    1 MAENNRHRKPKNQPKIDTDPNPLKLPSIIQSTRCKSTISSLLLSSPPESSTPKKKSFT--TFRGLGCAASAQVSVPGVIRSSANWEAKKVRKKKDKGLKEKKNKGPFHAVAMVHGNSSASSSTSVVDPDSWCGPG--FATEPATSV---VSRRPVSGRGKVDSQKMNQRERTLFGGRSMGNPEAISFSDVEPEFEMLRPRLDVFNSCHHRHVQNRSSEGLAEIVMLQSSFLMEGRSAGLDQYRDLRLDVDSMSYEELLDLGDRIGYVSTGLREDEIIRSLRKTKLSPLDELSSDIPTEWKCSICQEEYIADEEMGKLDCGHAYHMECIQNWLVKKNACPICKTAVASQQ 342
[Close]
BLAST of XM_017399554.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7APM5 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})

HSP 1 Score: 414.075 bits (1063), Expect = 1.276e-142
Identity = 214/365 (58.63%), Postives = 251/365 (68.77%), Query Frame = 0
 
Query:    1 MAENNKYRRPKKQPMLDTDPSTLKIPSTKKKN---------------------------------------FTSATFRGLGCAVSPQVAVPAVIKTSASWDAKKVKKKKQRSLQQKRSKGPFQGVAMAHGNSLAASSTCVVDPDVWCGPGIGFGADAAASVDCVVSRRPASGRGKVDGVRMNQRERSSFGGRRRVNHEAISFFDADLDQGMSRPRLSVFSSRPQRHVRHPSPEGLAEIVMLQSSLLMGGRPSRLDRYRDLRLDVDSMSYEELLDLGDRIGYVSTGLREDEIVRSLRKTKLSPVDELSSDISTDR--KCSICQEEYTAEDEMGKLDCRHSFHIQCIKSWLAKKNACPICKTAIASQ 324
            +AE+ +YR+P+ QP+ DTDP+  +IPS  +                                         FTS+TFRGLGC  S QV+VPAVI+TSA+W+ K+V+KKKQRSLQQK++K P Q V MA  N    SST VV PDVWCGPGIGF  DA  SVDCVVSRRP SGRGKVDG +MNQRERSS   RR VN E I F D+D   G +R  L VF +R  RHVRH SPEGLAEI+MLQSSLLMGGR    DRYRD R+DVD+MSYEELL+LGDRIGYV+TGLRED+I+R LRK KLS  D+LSS  +T+   KCSICQEEY A+DE GKLDC H +H  CIK WL +KN CP+CKTA  +Q
Sbjct:   11 IAEHIRYRKPRNQPITDTDPTPPQIPSVIQSTRSKSTISSLLLSSFTATTTNENTTAATTATATNNTKKKNFTSSTFRGLGCTASSQVSVPAVIRTSANWEGKEVRKKKQRSLQQKKNKAPNQAVEMATSN---PSSTSVVVPDVWCGPGIGFTTDAT-SVDCVVSRRPVSGRGKVDGEKMNQRERSSCSARRTVNPEHIPFLDSDRALGTARHGLDVFGARYHRHVRHRSPEGLAEIMMLQSSLLMGGRSDGFDRYRDWRIDVDNMSYEELLELGDRIGYVNTGLREDDIIRCLRKAKLSVSDDLSSHFATEMEWKCSICQEEYEADDETGKLDCGHFYHTHCIKQWLVQKNTCPVCKTAAVAQ 371
[Close]
BLAST of XM_017399554.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ARW9 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})

HSP 1 Score: 411.379 bits (1056), Expect = 1.240e-141
Identity = 214/365 (58.63%), Postives = 250/365 (68.49%), Query Frame = 0
 
Query:    1 MAENNKYRRPKKQPMLDTDPSTLKIPSTKKKN---------------------------------------FTSATFRGLGCAVSPQVAVPAVIKTSASWDAKKVKKKKQRSLQQKRSKGPFQGVAMAHGNSLAASSTCVVDPDVWCGPGIGFGADAAASVDCVVSRRPASGRGKVDGVRMNQRERSSFGGRRRVNHEAISFFDADLDQGMSRPRLSVFSSRPQRHVRHPSPEGLAEIVMLQSSLLMGGRPSRLDRYRDLRLDVDSMSYEELLDLGDRIGYVSTGLREDEIVRSLRKTKLSPVDELSSDISTDR--KCSICQEEYTAEDEMGKLDCRHSFHIQCIKSWLAKKNACPICKTAIASQ 324
            +AE+ +YR+P+ QP+ DTDP+  +IPS  +                                         FTS+TFRGLGC  S QV+VPAVI+TSA+W+ K+V+KKKQRSLQQK++K P Q V MA  N    SST VV PDVWCGPGIGF  DA  SVDCVVSRRP SGRGKVDG +MNQRERSS   RR VN E I F D+D   GM+R  L VF +R  RHVRH SPEGLAEI+MLQSSL+ GGR    DRYRD RLDVD+MSYEELL+LGDRIG V+TGLREDEIV  L KTKLS +D+LS    T+   KC+ICQEEY A+DEMGKLDC H +HI CIK WL +KN CP+CKTA  +Q
Sbjct:   11 IAEHIRYRKPRNQPITDTDPTPPQIPSVIQSTRSKSTISSLLLSSFTATTTNENTTAATTATATNNTKKKNFTSSTFRGLGCTASSQVSVPAVIRTSANWEGKEVRKKKQRSLQQKKNKAPNQAVEMATSN---PSSTSVVVPDVWCGPGIGFTTDAT-SVDCVVSRRPVSGRGKVDGEKMNQRERSSCSARRTVNPEHIPFLDSDRALGMARHGLDVFGARYHRHVRHRSPEGLAEIMMLQSSLITGGRSDGFDRYRDWRLDVDNMSYEELLELGDRIGNVNTGLREDEIVHCLGKTKLSILDDLSPHFPTEMEWKCTICQEEYEADDEMGKLDCGHFYHIHCIKQWLVQKNTCPVCKTAAVAQ 371
[Close]
BLAST of XM_017399554.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BJ44 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})

HSP 1 Score: 403.675 bits (1036), Expect = 1.818e-138
Identity = 214/372 (57.53%), Postives = 251/372 (67.47%), Query Frame = 0
 
Query:    1 MAENNKYRRPKKQPMLDTDPSTLKIPST----------------------------------------------KKKNFTSATFRGLGCAVSPQVAVPAVIKTSASWDAKKVKKKKQRSLQQKRSKGPFQGVAMAHGNSLAASSTCVVDPDVWCGPGIGFGADAAASVDCVVSRRPASGRGKVDGVRMNQRERSSFGGRRRVNHEAISFFDADLDQGMSRPRLSVFSSRPQRHVRHPSPEGLAEIVMLQSSLLMGGRPSRLDRYRDLRLDVDSMSYEELLDLGDRIGYVSTGLREDEIVRSLRKTKLSPVDELSSDIST--DRKCSICQEEYTAEDEMGKLDCRHSFHIQCIKSWLAKKNACPICKTAIASQ 324
            +AE+ +YR+P+ Q +  TDP+  +IPS                                               KKKNF SATFRGLGC  S QV+VPAVI+TSA+W+ KKV+KKKQRS+QQK++K P Q VA    N    SST VV PDVWCGPGIGF  DAA  VDCVVSRRP SGRGKVDG +MN RERSS    R VN E + F ++D   GM+ P L VF +R  RHVRH SPEGLAEI+MLQSSL+MGGR    DRYRD RLDVD+MSYEELL+LGDRIG+V+TGLREDEIV  LR+TK+S +D+LSS   T  + KCSICQEEY A++EMGKLDC H +H  CIK WLAKKN CPICKTA  +Q
Sbjct:   11 IAEHIRYRKPRNQLVPYTDPNPPQIPSIIQSTRCKSTISSLLLSTFTTTSSSSSSTNENTTATTTTTTSATNNTKKKNFASATFRGLGCTASSQVSVPAVIRTSANWEGKKVRKKKQRSVQQKKNKSPHQAVAATTTN---PSSTSVVVPDVWCGPGIGFTTDAAP-VDCVVSRRPVSGRGKVDGEKMNHRERSSCSTGRTVNPEHMLFLNSDHALGMACPGLDVFGARYHRHVRHRSPEGLAEIMMLQSSLVMGGRSDGFDRYRDWRLDVDNMSYEELLELGDRIGHVNTGLREDEIVHCLRRTKISILDDLSSHFPTEVEWKCSICQEEYEADNEMGKLDCGHFYHTHCIKQWLAKKNTCPICKTAAVAQ 378
[Close]
BLAST of XM_017399554.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BJG2 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})

HSP 1 Score: 395.971 bits (1016), Expect = 1.161e-135
Identity = 207/364 (56.87%), Postives = 251/364 (68.96%), Query Frame = 0
 
Query:    1 MAENNKYRRPKKQPMLDTDPSTLKIPSTKKKN-------------FT-------------------------SATFRGLGCAVSPQVAVPAVIKTSASWDAKKVKKKKQRSLQQKRSKGPFQGVAMAHGNSLAASSTCVVDPDVWCGPGIGFGADAAASVDCVVSRRPASGRGKVDGVRMNQRERSSFGGRRRVNHEAISFFDADLDQGMSRPRLSVFSSRPQRHVRHPSPEGLAEIVMLQSSLLMGGRPSRLDRYRDLRLDVDSMSYEELLDLGDRIGYVSTGLREDEIVRSLRKTKLSPVDELSSDISTDR--KCSICQEEYTAEDEMGKLDCRHSFHIQCIKSWLAKKNACPICKTAIASQ 324
            +AE+ +YR+P+ Q + DTDP+  ++PS  +               FT                         SA FRGLGC  S  V+VPAVI+TSA+W+ K+V+KKKQRSLQQK++K P Q VAMA+ N    SST VV PDVWCGPGIGF  DAA SVDCVVSRRP SGRGKVDG +MNQRE SS+  RRRVN E + F D+D   GM+RP   VF +R  RHVRH SPEGLAE+++LQS+LLMGGR    DRYRD R+DVD+MSYEELL+LGDRIG+V+TGL EDEIVR LRK KL  + +LSS   T+   KCSICQEEY A+D+ GKL+C H +H  CIK WLA+KN CPICKT+  +Q
Sbjct:   11 IAEHIRYRKPRNQLITDTDPNPPQLPSIIQSTRCKSTISSLLLSTFTNTSANENTTAANTTATATNNTKKKKSAAFRGLGCTASSHVSVPAVIRTSANWEGKEVRKKKQRSLQQKKNKAPHQAVAMANTN---PSSTSVVLPDVWCGPGIGFATDAA-SVDCVVSRRPVSGRGKVDGEKMNQRE-SSYSARRRVNPEHMPFLDSDHALGMARPGSDVFGARYHRHVRHRSPEGLAEMMLLQSNLLMGGRSDGFDRYRDWRIDVDNMSYEELLELGDRIGHVNTGLGEDEIVRCLRKAKLPVLYDLSSHFQTEMEWKCSICQEEYEADDDTGKLECGHFYHTHCIKQWLAQKNTCPICKTSAVAQ 369
[Close]
BLAST of XM_017399554.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ARM8 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089} (Fragment))

HSP 1 Score: 394.43 bits (1012), Expect = 4.389e-134
Identity = 211/366 (57.65%), Postives = 252/366 (68.85%), Query Frame = 0
 
Query:    1 MAENNKYRRPKKQPMLDTDPSTLKIPSTKKKN----------------------------------------FTSATFRGLGCAVSPQVAVPAVIKTSASWDAKKVKKKKQRSLQQKRSKGPFQGVAMAHGNSLAASSTCVVDPDVWCGPGIGFGADAAASVDCVVSRRPASGRGKVDGVRMNQRERSSFGGRRRVNHEAISFFDADLDQGMSRPRLSVFSSRPQRHVRHPSPEGLAEIVMLQSSLLMGGRPSRLDRYRDLRLDVDSMSYEELLDLGDRIGYVSTGLREDEIVRSLRKTKLSPVDELSSDISTDR--KCSICQEEYTAEDEMGKLDCRHSFHIQCIKSWLAKKNACPICKTAIASQ 324
            +AE+ ++R+P+ Q + DTDP+  +IPS  +                                          FTSATFRGLGC  S QV++PAVI+TSA+W+ KKV+KKKQRSLQQK++  P Q VAMA  N  ++S++ VV PDVWCGPGIGF  DA  SVDCVVSRRP SGRGKVDG +MNQRERSS   RR VN E I F D+D   G +R  L VF +R  RHVRH SPEGLAEI+MLQSSLLMGGR    DRYRD R+DVD+MSYEELL+LGDRIGYV+TGLRED+I+R LRK KLS  D+LSS  +T+   KCSICQEEY A+DE GKLDC H +H  CIK WL +KN CP+CKTA  +Q
Sbjct:   65 IAEHIRHRKPRNQLVPDTDPNPPQIPSIIQSTRCKSTISSLLLSTFTTTTTTTTTTTNTNEDTTTNNTKKKNFTSATFRGLGCTASSQVSLPAVIRTSANWEGKKVRKKKQRSLQQKKNNAPNQAVAMATTNPSSSSTS-VVVPDVWCGPGIGFTTDAT-SVDCVVSRRPVSGRGKVDGEKMNQRERSSCSARRTVNPEHIPFLDSDRALGTARHGLDVFGARYHRHVRHRSPEGLAEIMMLQSSLLMGGRSDGFDRYRDWRIDVDNMSYEELLELGDRIGYVNTGLREDDIIRCLRKAKLSVSDDLSSHFATEMEWKCSICQEEYEADDETGKLDCGHFYHTHCIKQWLVQKNTCPVCKTAAVAQ 428
[Close]
BLAST of XM_017399554.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6GTP6 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})

HSP 1 Score: 376.326 bits (965), Expect = 9.227e-128
Identity = 214/364 (58.79%), Postives = 252/364 (69.23%), Query Frame = 0
 
Query:    1 MAENNKYRRPKKQPMLDTDPSTLKIPST-----------------------------------KKKNFTSATFRGLGCAVSPQVAVPAVIKTSASWDAKKVKKKKQRSLQQKRSKGPF---QGVAMAHGNSLAASSTCVVDPDVWCGPGIGFGADAAASVDCVVSRRPASGRGKVDGVRMNQRERSSFGGRRRVNHEAISFFDADLDQGMSRPRLSVFSSRPQRHVRHPSPEGLAEIVMLQSSLLMGGRPSRLDRYRDLRLDVDSMSYEELLDLGDRIGYVSTGLREDEIVRSLRKTKLSPVDELSSDIST--DRKCSICQEEYTAEDEMGKLDCRHSFHIQCIKSWLAKKNACPICKTAIASQ 324
            +AE+ + RRP+ QP+ DTDP+  +IPS                                    +KKNF SA FRGLGCA S QV+VPAVI+TSA W AKKV+KKKQRSLQQ++ +      +GV     N  AAS  CVV PDVWC PGIGF ADAA SVDCVV+RRPASGRGKVDG ++NQRER+S   RR  N E ISF D+D   GM RP   VF  R  RHVRH SPEGLAEIV+ +S+ LMGGR +  DRYRD RLDVD+MSYEELL+LGDRIGYVSTGL+EDEI R LRK+KLS +DELS+ + T  D KCSICQEEY A+DEMGKL+C H +HI CIK WL +KN+CP+CK   A+Q
Sbjct:   10 VAEHIRLRRPRSQPIPDTDPNP-QIPSIIQSTRCKSSISSLLLSTFSNTNANTNEGSNNTSGGRKKNFASAKFRGLGCAASSQVSVPAVIRTSADWQAKKVRKKKQRSLQQQQQQQKKSGNKGVNAVAPNPPAASVECVV-PDVWCAPGIGFSADAA-SVDCVVARRPASGRGKVDGDKINQRERASCPTRRATNSEHISFHDSDPTIGMMRPGSDVFGPRYYRHVRHRSPEGLAEIVLFESNFLMGGRSNGHDRYRDWRLDVDNMSYEELLELGDRIGYVSTGLQEDEIGRCLRKSKLSILDELSAHLPTELDWKCSICQEEYEADDEMGKLECGHGYHIDCIKQWLGQKNSCPVCKATAAAQ 370
[Close]
BLAST of XM_017399554.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PU01 ((E3 ubiquitin-protein like {ECO:0000313|EMBL:PSR96536.1}))

HSP 1 Score: 370.163 bits (949), Expect = 1.076e-125
Identity = 200/349 (57.31%), Postives = 243/349 (69.63%), Query Frame = 0
 
Query:    2 AENNKYRRPKKQPMLDTDPSTLKIPST-----------------------KKKNFTSATFRGLGCAVSPQVAVPAVIKTSASWDAKKVKKKKQRSLQQKRSKGPFQGVAMAHGNSLAASSTCVVDPDVWCGPGIGFGADAAASVDCVVSRRPASGRGKVDGVRMNQRERSSFGGRRRVNHEAISFFDADLDQGMSRPRLSVFSSRPQRHVRHPSPEGLAEIVMLQSSLLMGGRPSRLDRYRDLRLDVDSMSYEELLDLGDRIGYVSTGLREDEIVRSLRKTKLSPVDELSSDIST--DRKCSICQEEYTAEDEMGKLDCRHSFHIQCIKSWLAKKNACPICKTAIASQQ 325
            AE  +YRRP+ QP  DTDP   ++PS                        KKKNF S +FRGLGCA SPQV+VPA I+TSA+W+      +K+   + K+ K P Q +AMA  N+    S+ VV PDVWCGPGIGF  DAA SVDCVVSRRP SGR KVDG +MNQRER S   RR +  E+++  D+D   GM    L VF +R  RHVRH SP+GLAEI+MLQ+SL+MGGRP   DRYRD RLDVD+MSYEELL+LGD+IGYV+TGL+EDEIV  LR+TKL  +D+L S  +T  +RKCSICQE+Y A+DEMGKL+C H +HI CIK WLA+KN CPICKT  A+QQ
Sbjct:   12 AETIRYRRPRNQPTSDTDPDPPQMPSIPQFTGCKSSISSLLLSNPITATPKKKNFASGSFRGLGCAASPQVSVPAAIRTSATWE------EKKVRKKTKKKKSPSQALAMASSNNSHNPSSSVVVPDVWCGPGIGFTTDAA-SVDCVVSRRPVSGRPKVDGDKMNQRERGSCSTRRMMKPESMASLDSDYSLGMRHSGLDVFGAR-YRHVRHRSPDGLAEIMMLQNSLMMGGRPDGFDRYRDWRLDVDNMSYEELLELGDKIGYVNTGLKEDEIVHCLRETKL--LDDLFSPFATEMERKCSICQEDYEADDEMGKLECGHFYHIDCIKQWLARKNICPICKTVAAAQQ 350
[Close]
BLAST of XM_017399554.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200QUZ1 ((Zinc finger protein {ECO:0000313|EMBL:OVA14255.1}))

HSP 1 Score: 362.844 bits (930), Expect = 5.004e-123
Identity = 191/336 (56.85%), Postives = 229/336 (68.15%), Query Frame = 0
 
Query:    1 MAENNKYRRPKKQPML-DTDPSTLKIP--------STKKKNFTSATFRGLGCAVSPQVAVPAVIKTSASWDAKKVKKKKQRSLQQKRSKGPFQGVAMAHGNSLAASSTCVVDPDVWCGPGIGFGADAAASVDCVVSRRPASGRGKVD-GVRMNQRERSSFGGRRRVNHEAISFFDADLDQGMSRPRLSVFSSRPQRHVRHPSPEGLAEIVMLQSSLLMGGRPSRLDRYRDLRLDVDSMSYEELLDLGDRIGYVSTGLREDEIVRSLRKTKLSPVDELSSDISTDR--KCSICQEEYTAEDEMGKLDCRHSFHIQCIKSWLAKKNACPICKTAIASQ 324
            + E  +YRRP+ Q +   +DP+    P          KKKNFTSATFRG GC  S QV+ P VI+TSA W AKKV+KKKQR+ Q+K++             +   S+  VV PDVWC PGI F AD+AASVDCVVSRRP  GRG++D G R+N RERS    RR  NHE +S  D+      S     VF +R  RH RH SP GL+EI+M Q+SLL+GGRP   DRYRDLRLDVD+MSYEELL+LG+RIGYVSTGLREDEI+R LRKTK S +D L S   T+   KCSICQEEY A+DE+GKLDC H+FHI CIK WL +KNACP+CK A  +Q
Sbjct:    9 IPEQTRYRRPRNQSISPSSDPTPQISPLLQSTRSLKNKKKNFTSATFRGFGCGTSSQVSAPTVIRTSADWQAKKVRKKKQRNPQRKKNH------QQTMTTTTNNSTPVVVVPDVWCAPGIAFSADSAASVDCVVSRRPVQGRGRMDAGERVNHRERSCI-SRRTANHEHLSILDSPSTFETSHIGSEVFGARNHRHFRHRSPGGLSEIMMFQNSLLLGGRPEGFDRYRDLRLDVDNMSYEELLELGERIGYVSTGLREDEILRCLRKTKHSILDALQSHFLTEMNWKCSICQEEYEADDEVGKLDCGHNFHISCIKQWLLQKNACPVCKVAAMAQ 337
[Close]
BLAST of XM_017399554.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A5BVW4 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})

HSP 1 Score: 352.443 bits (903), Expect = 2.435e-119
Identity = 193/293 (65.87%), Postives = 223/293 (76.11%), Query Frame = 0
 
Query:   37 TFRGLGCAVSPQVAVPAVIKTSASWDAKKVKKKKQRSLQQKRSKGPF---QGVAMAHGNSLAASSTCVVDPDVWCGPGIGFGADAAASVDCVVSRRPASGRGKVDGVRMNQRERSSFGGRRRVNHEAISFFDADLDQGMSRPRLSVFSSRPQRHVRHPSPEGLAEIVMLQSSLLMGGRPSRLDRYRDLRLDVDSMSYEELLDLGDRIGYVSTGLREDEIVRSLRKTKLSPVDELSSDIST--DRKCSICQEEYTAEDEMGKLDCRHSFHIQCIKSWLAKKNACPICKTAIASQ 324
            +FRGLGCA S QV+VPAVI+TSA W AKKV+KKKQRSLQQ++ +      +GV     N  AAS  CVV PDVWC PGIGF AD A SVDCVV+RRPASGRGKVDG ++NQRER S   RR  N E ISF D+D   GM RP   VF  R  RHVRH SPEGLAEIV+ +S+ LMGGR +  DRYRD RLDVD+MSYEELL+LGDRIGYVSTGL+EDEI R LRK+KLS +DELS+ + T  D KCSICQEEY A+DEMGKL+C H +HI CIK WL +KN+CP+CK   A+Q
Sbjct:   19 SFRGLGCAASSQVSVPAVIRTSADWQAKKVRKKKQRSLQQQQQQQKKSGNKGVNAVAPNPPAASVECVV-PDVWCAPGIGFSADXA-SVDCVVARRPASGRGKVDGDKINQRERXSCPTRRATNSEHISFHDSDPTIGMMRPGSDVFGPRYYRHVRHRSPEGLAEIVLFESNFLMGGRSNGHDRYRDWRLDVDNMSYEELLELGDRIGYVSTGLQEDEIGRCLRKSKLSILDELSAHLPTELDWKCSICQEEYEADDEMGKLECGHGYHIDCIKQWLGQKNSCPVCKATAAAQ 309
Match NameStatsDescription
A0A6L5BA08E-Value: 9.228e-147, PID: 65.62RING-type domain-containing protein {ECO:0000259|P... [more]
A0A5B7APM5E-Value: 1.276e-142, PID: 58.63RING-type domain-containing protein {ECO:0000259|P... [more]
A0A5B7ARW9E-Value: 1.240e-141, PID: 58.63RING-type domain-containing protein {ECO:0000259|P... [more]
A0A5J5BJ44E-Value: 1.818e-138, PID: 57.53RING-type domain-containing protein {ECO:0000259|P... [more]
A0A5J5BJG2E-Value: 1.161e-135, PID: 56.87RING-type domain-containing protein {ECO:0000259|P... [more]
A0A5B7ARM8E-Value: 4.389e-134, PID: 57.65RING-type domain-containing protein {ECO:0000259|P... [more]
F6GTP6E-Value: 9.227e-128, PID: 58.79RING-type domain-containing protein {ECO:0000259|P... [more]
A0A2R6PU01E-Value: 1.076e-125, PID: 57.31(E3 ubiquitin-protein like {ECO:0000313|EMBL:PSR96... [more]
A0A200QUZ1E-Value: 5.004e-123, PID: 56.85(Zinc finger protein {ECO:0000313|EMBL:OVA14255.1}... [more]
A5BVW4E-Value: 2.435e-119, PID: 65.87RING-type domain-containing protein {ECO:0000259|P... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.