XM_017359596.1

Resource Type: 
Polypeptide
Name: 
XM_017359596.1
Identifier: 
XM_017359596.1-protein
Sequence: 
MASETLTNPTNGSVITSSNPQRTYQVVVAATQNMGIGKDGSLPWSLPSDL
KFFKDVTMTTSDPLKRNAVIMGRKTWESIPLQHRPLPGRFNVVLTRSGSF
DIATAENVVICGSLLSALELLAESPYCVSIEKVFVIGGGQIYREALNAPG
CDAVHITEIGKHIECDTFIPALDESVFQPWYSSFPVVENNIRYCFTTYVR
VRNSGVELASEANGLLSDGNSDSGKFEVQRFSFLPKPVFEKHQEYLYLRL
VENIILNGVEKNDRTRTGTVSMFGCQMRFNLRKSFPLLTTKKVFWRGVVE
ELLWFISGSTNAKVLKEKGINIWEGNGSRDYLDSIGLTHREEGDLGPIYG
FQWRHFGARYTDMHADYTGQGFDQLQDVISKIKENPDDRRIILSAWNPSD
LKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCM
IAHVCDLVPGDFVHTIGDAHIYLNHVRPLQDQLQKLPKPFPVLKINSEKR
NIDSFEAADFKLVGYDPHQKIEMKMAV
Sequence Length: 
527
Sequence Checksum: 
46631bd2008c21bb6bc168c1dd24763b
View location in JBrowse: 
DCARv2_Chr6:2877578..2880645+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017359596.1, derives from mRNA, XM_017359596.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017359596.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017359596.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BBW4 (Bifunctional dihydrofolate reductase-thymidylate synthase {ECO:0000256|PIRNR:PIRNR000389})

HSP 1 Score: 1034.25 bits (2673), Expect = 0.000e+0
Identity = 487/527 (92.41%), Postives = 505/527 (95.83%), Query Frame = 0
 
Query:    1 MASETLTNPTNGSVITSSNPQRTYQVVVAATQNMGIGKDGSLPWSLPSDLKFFKDVTMTTSDPLKRNAVIMGRKTWESIPLQHRPLPGRFNVVLTRSGSFDIATAENVVICGSLLSALELLAESPYCVSIEKVFVIGGGQIYREALNAPGCDAVHITEIGKHIECDTFIPALDESVFQPWYSSFPVVENNIRYCFTTYVRVRNSGVELASEANGLLSDGNSDSGKFEVQRFSFLPKPVFEKHQEYLYLRLVENIILNGVEKNDRTRTGTVSMFGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLKEKGINIWEGNGSRDYLDSIGLTHREEGDLGPIYGFQWRHFGARYTDMHADYTGQGFDQLQDVISKIKENPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFVHTIGDAHIYLNHVRPLQDQLQKLPKPFPVLKINSEKRNIDSFEAADFKLVGYDPHQKIEMKMAV 527
            MASETL NPTNGSV+TS NPQRTYQVVVAA  NMGIGKDGSLPW LPSDLKFFKDVT+TTSDPLKRNAVIMGRKTWESIPLQHRPLPGR NVVLTRSGSFDIATAENVVICGS+LSALELLAESPYCVSIEKVF+IGGGQIYREALNAPGCDAVHITEI +HIECDTFIP ++ESVFQPWYSSFPVVENNIRYCFTTYVRVRNSGVEL SEAN  LSDGN DSGKFE+QRFSFLPKPV+EKH+EYLYLRLVENII NGVEKNDRTRTGTVS+FGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAK LKEKG+NIWE NGSR+YLDSIGL  REEGDLGP+YGFQWRHFGARYTDMHADYTGQGFDQL DVISKIK NPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFVHTIGDAH+Y NH+RPLQDQLQK PKPFPVLKINSEKR+IDSFEAADFKL+GYDPHQKI MKMAV
Sbjct:    1 MASETLANPTNGSVVTSPNPQRTYQVVVAAAHNMGIGKDGSLPWKLPSDLKFFKDVTLTTSDPLKRNAVIMGRKTWESIPLQHRPLPGRLNVVLTRSGSFDIATAENVVICGSMLSALELLAESPYCVSIEKVFIIGGGQIYREALNAPGCDAVHITEIEEHIECDTFIPPINESVFQPWYSSFPVVENNIRYCFTTYVRVRNSGVELTSEANDQLSDGNLDSGKFEIQRFSFLPKPVYEKHEEYLYLRLVENIISNGVEKNDRTRTGTVSIFGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKFLKEKGVNIWEENGSREYLDSIGLADREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVISKIKNNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFVHTIGDAHVYCNHIRPLQDQLQKQPKPFPVLKINSEKRDIDSFEAADFKLIGYDPHQKIAMKMAV 527
[Close]
BLAST of XM_017359596.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q39687 (Bifunctional dihydrofolate reductase-thymidylate synthase {ECO:0000256|PIRNR:PIRNR000389})

HSP 1 Score: 976.082 bits (2522), Expect = 0.000e+0
Identity = 460/528 (87.12%), Postives = 487/528 (92.23%), Query Frame = 0
 
Query:    1 MASETLTNPTNGSVITSSNPQRTYQVVVAATQNMGIGKDGSLPWSLPSDLKFFKDVTMTTSDPLKRNAVIMGRKTWESIPLQHRPLPGRFNVVLTRSGSFDIATAENVVICGSLLSALELLAESPYCVSIEKVFVIGGGQIYREALNAPGCDAVHITEIGKHIECDTFIPALDESVFQPWYSSFPVVENNIRYCFTTYVRVRNSGVELASEANGLLSDGNSDSGKFEVQRFSFLPKPVFEKHQEYLYLRLVENIILNGVEKNDRTRTGTVSMFGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLKEKGINIWEGNGSRDYLDSIGLTHREEGDLGPIYGFQWRHFGARYTDMHADYTGQGFDQLQDVISKIKENPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFVHTIGDAHIYLNHVRPL-QDQLQKLPKPFPVLKINSEKRNIDSFEAADFKLVGYDPHQKIEMKMAV 527
            MASE L NPTNGS IT  +PQRTYQVVVAATQNMGIGKDG LPW LPSD+KFFKDVTMTTSDPLKRNAVIMGRKTWESIP+QHRPLPGR NVVLTRSGSFDIAT ENVVICGS++SALELLA SPYCVS+EKVFVIGGGQIYREALNAPGCDAVHITEI +HIECDTFIP LDESVFQPWYSSFP+VEN IRYCFTTYVRVRNS  EL S+ NG  SD  SDSG FE+Q FSFLPK VFEKH+EYLYL LVENII NGV KNDRTRTGTVS+FGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAK+LKEKG+NIWEGNGSR+YLDSIGLT REEGDLGPIYGFQWRHFGARYTDMHADY+GQGFDQL DVISKIK NPDDRRII SAWNPSDL+LMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIA+YALLTCMIAHVCDLVPGDFVH+IGDAH+Y NH+  L +   + LPK FPVLKINS +++IDSFEAADFKL+GYDPHQKIEMKMAV
Sbjct:   50 MASERLANPTNGSGITRPDPQRTYQVVVAATQNMGIGKDGKLPWRLPSDMKFFKDVTMTTSDPLKRNAVIMGRKTWESIPIQHRPLPGRLNVVLTRSGSFDIATVENVVICGSMISALELLAGSPYCVSVEKVFVIGGGQIYREALNAPGCDAVHITEIEEHIECDTFIPLLDESVFQPWYSSFPLVENKIRYCFTTYVRVRNSVAELTSQTNGCSSDSKSDSGNFEIQNFSFLPKTVFEKHEEYLYLGLVENIISNGVTKNDRTRTGTVSIFGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKILKEKGVNIWEGNGSREYLDSIGLTDREEGDLGPIYGFQWRHFGARYTDMHADYSGQGFDQLLDVISKIKNNPDDRRIIQSAWNPSDLRLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIAAYALLTCMIAHVCDLVPGDFVHSIGDAHVYSNHLSDLFETSFRMLPKTFPVLKINSGEKDIDSFEAADFKLIGYDPHQKIEMKMAV 577
[Close]
BLAST of XM_017359596.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: P45350 (Bifunctional dihydrofolate reductase-thymidylate synthase (DHFR-TS) (Dihydrofolate reductase) (1.5.1.3) (Thymidylate synthase) (2.1.1.45))

HSP 1 Score: 973.385 bits (2515), Expect = 0.000e+0
Identity = 460/528 (87.12%), Postives = 487/528 (92.23%), Query Frame = 0
 
Query:    1 MASETLTNPTNGSVITSSNPQRTYQVVVAATQNMGIGKDGSLPWSLPSDLKFFKDVTMTTSDPLKRNAVIMGRKTWESIPLQHRPLPGRFNVVLTRSGSFDIATAENVVICGSLLSALELLAESPYCVSIEKVFVIGGGQIYREALNAPGCDAVHITEIGKHIECDTFIPALDESVFQPWYSSFPVVENNIRYCFTTYVRVRNSGVELASEANGLLSDGNSDSGKFEVQRFSFLPKPVFEKHQEYLYLRLVENIILNGVEKNDRTRTGTVSMFGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLKEKGINIWEGNGSRDYLDSIGLTHREEGDLGPIYGFQWRHFGARYTDMHADYTGQGFDQLQDVISKIKENPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFVHTIGDAHIYLNHVRPL-QDQLQKLPKPFPVLKINSEKRNIDSFEAADFKLVGYDPHQKIEMKMAV 527
            MASE L NPTNGS IT  +PQRTYQVVVAATQNMGIGKDG LPW LPSD+KFFKDVTMTTSDPLKRNAVIMGRKTWESIP+QHRPLPGR NVVLTRSGSFDIAT ENVVICGS++SALELLA SPYCVS+EKVFVIGGGQIYREALNAPGCDAVHITEI +HIECDTFIP LDESVFQPWYSSFP+VEN IRYCFTTYVRVRNS  EL S+ NG  SD  SDSG FE+Q FSFLPK VFEKH+EYLYL LVENII NGV KNDRTRTGTVS+FGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAK+LKEKG+NIWEGNGSR+YLDSIGLT REEGDLGPIYGFQWRHFGARYTDMHADY+GQGFDQL DVISKIK NPDDRRII SAWNPSDL+LMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIA+YALLTCMIAHVCDLVPGDFVH+IGDAH+Y NH+  L +   + LPK FPVLKINS +++IDSFEAADFKL+GYDPHQKIEMKMAV
Sbjct:    1 MASELLANPTNGSGITRPDPQRTYQVVVAATQNMGIGKDGKLPWRLPSDMKFFKDVTMTTSDPLKRNAVIMGRKTWESIPIQHRPLPGRLNVVLTRSGSFDIATVENVVICGSMISALELLAGSPYCVSVEKVFVIGGGQIYREALNAPGCDAVHITEIEEHIECDTFIPLLDESVFQPWYSSFPLVENKIRYCFTTYVRVRNSVAELTSQTNGCSSDSKSDSGNFEIQNFSFLPKTVFEKHEEYLYLGLVENIISNGVTKNDRTRTGTVSIFGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKILKEKGVNIWEGNGSREYLDSIGLTDREEGDLGPIYGFQWRHFGARYTDMHADYSGQGFDQLLDVISKIKNNPDDRRIIQSAWNPSDLRLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIAAYALLTCMIAHVCDLVPGDFVHSIGDAHVYSNHLSDLFETSFRMLPKTFPVLKINSGEKDIDSFEAADFKLIGYDPHQKIEMKMAV 528
[Close]
BLAST of XM_017359596.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BWE1 (Bifunctional dihydrofolate reductase-thymidylate synthase {ECO:0000256|PIRNR:PIRNR000389})

HSP 1 Score: 936.406 bits (2419), Expect = 0.000e+0
Identity = 438/527 (83.11%), Postives = 481/527 (91.27%), Query Frame = 0
 
Query:    1 MASETLTNPTNGSVITSSNPQRTYQVVVAATQNMGIGKDGSLPWSLPSDLKFFKDVTMTTSDPLKRNAVIMGRKTWESIPLQHRPLPGRFNVVLTRSGSFDIATAENVVICGSLLSALELLAESPYCVSIEKVFVIGGGQIYREALNAPGCDAVHITEIGKHIECDTFIPALDESVFQPWYSSFPVVENNIRYCFTTYVRVRNSGVELASEANGLLSDGNSDSGKFEVQRFSFLPKPVFEKHQEYLYLRLVENIILNGVEKNDRTRTGTVSMFGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLKEKGINIWEGNGSRDYLDSIGLTHREEGDLGPIYGFQWRHFGARYTDMHADYTGQGFDQLQDVISKIKENPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFVHTIGDAHIYLNHVRPLQDQLQKLPKPFPVLKINSEKRNIDSFEAADFKLVGYDPHQKIEMKMAV 527
            MA +TL    NGSV T ++PQRTYQVVVAAT++MGIGKDG LPW LP DLKFFKDVT+TTSDP+K+NAVIMGRKTWESIP++HRPLPGR NVVLTRSGSFDIATAENVVICGS+ SALELLA SPYC+SIEKVFVIGGGQI REALNAPGCDA+HITEI   I CDTFIPA+D SVFQPWYSSFP+VEN+IRY FTTYVRVRNS VE   + NG++S G SDS KFEV++FSFLPK +FEKH+EY+YLRLV++II NGV K+DRT TGT+S FGCQMRFNLRK+FPLLTTKKVFWRGVVEELLWFISGSTNAKVL+EKGI+IW+GN SRDYLDS+GL  REEGDLGP+YGFQWRHFGARYTDMHADYTGQGFDQL DVI KIK+NPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTC+IAHVCDLVPGDFVH  GD H+Y  HVRPLQ+QLQKLPKPFP+LKIN +K++IDSF A+DFKLVGYDPHQKI MKMAV
Sbjct:    1 MAGDTLVKLPNGSVNTHADPQRTYQVVVAATRDMGIGKDGKLPWRLPRDLKFFKDVTVTTSDPVKKNAVIMGRKTWESIPVEHRPLPGRLNVVLTRSGSFDIATAENVVICGSMASALELLAASPYCLSIEKVFVIGGGQILREALNAPGCDAIHITEIETDIACDTFIPAVDASVFQPWYSSFPLVENSIRYSFTTYVRVRNSTVEPLDQTNGMMSGGCSDSDKFEVKKFSFLPKMIFEKHEEYIYLRLVQDIISNGVLKDDRTGTGTLSTFGCQMRFNLRKTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASRDYLDSVGLMDREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVIGKIKDNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCIIAHVCDLVPGDFVHVFGDTHVYNTHVRPLQEQLQKLPKPFPILKINPQKKDIDSFVASDFKLVGYDPHQKIAMKMAV 527
[Close]
BLAST of XM_017359596.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B3A0 (Bifunctional dihydrofolate reductase-thymidylate synthase {ECO:0000256|PIRNR:PIRNR000389})

HSP 1 Score: 934.48 bits (2414), Expect = 0.000e+0
Identity = 442/527 (83.87%), Postives = 478/527 (90.70%), Query Frame = 0
 
Query:    1 MASETLTNPTNGSVITSSNPQRTYQVVVAATQNMGIGKDGSLPWSLPSDLKFFKDVTMTTSDPLKRNAVIMGRKTWESIPLQHRPLPGRFNVVLTRSGSFDIATAENVVICGSLLSALELLAESPYCVSIEKVFVIGGGQIYREALNAPGCDAVHITEIGKHIECDTFIPALDESVFQPWYSSFPVVENNIRYCFTTYVRVRNSGVELASEANGLLSDGNSDSGKFEVQRFSFLPKPVFEKHQEYLYLRLVENIILNGVEKNDRTRTGTVSMFGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLKEKGINIWEGNGSRDYLDSIGLTHREEGDLGPIYGFQWRHFGARYTDMHADYTGQGFDQLQDVISKIKENPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFVHTIGDAHIYLNHVRPLQDQLQKLPKPFPVLKINSEKRNIDSFEAADFKLVGYDPHQKIEMKMAV 527
            MA +TL    NGSV    +PQRTYQVVVAAT++MGIGKD  LPW LPSDLKFFKDVT+TTSDP+K+NAVIMGRKTWESIPL+HRPLPGR NVVLTRSGSFDIATAENVVICGS+ SALELLA SPYC+SIEKVFVIGGGQI REALNAPGCDA+HITEI   IECDTFIPA+D SVF PWYSSFP+VENNIRY FTTYVRVRN  VE   + NGL+SD  SD+ KFEV++FSFLPK +FEKH+EYLYLRLV++II NG  ++DRT TGT+S FGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKVL+EKGI+IW+GN SRDYLDSIGL  REEGDLGP+YGFQWRHFGARYTDMHADYTG GFDQL DVI KIK NPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGL VPFNIASYALLTCMIAHVCDLVPGDFVH IGDAH+Y  HVRPLQ+QLQKLPKPFP+LKIN +K++IDSFEAADFKL+GYDPHQKIEMKMAV
Sbjct:    1 MAGDTLMKLPNGSVNAHPDPQRTYQVVVAATRDMGIGKDEKLPWRLPSDLKFFKDVTVTTSDPVKKNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATAENVVICGSMASALELLAASPYCLSIEKVFVIGGGQILREALNAPGCDAIHITEIETDIECDTFIPAVDASVFHPWYSSFPLVENNIRYSFTTYVRVRNPTVEPLGQTNGLMSDSCSDA-KFEVKKFSFLPKMIFEKHEEYLYLRLVKDIISNGAPRDDRTGTGTLSKFGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASRDYLDSIGLVDREEGDLGPVYGFQWRHFGARYTDMHADYTGHGFDQLLDVIGKIKNNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLSVPFNIASYALLTCMIAHVCDLVPGDFVHVIGDAHVYNTHVRPLQEQLQKLPKPFPILKINPQKKDIDSFEAADFKLIGYDPHQKIEMKMAV 526
[Close]
BLAST of XM_017359596.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AZH1 (Bifunctional dihydrofolate reductase-thymidylate synthase {ECO:0000256|PIRNR:PIRNR000389})

HSP 1 Score: 922.539 bits (2383), Expect = 0.000e+0
Identity = 438/527 (83.11%), Postives = 475/527 (90.13%), Query Frame = 0
 
Query:    1 MASETLTNPTNGSVITSSNPQRTYQVVVAATQNMGIGKDGSLPWSLPSDLKFFKDVTMTTSDPLKRNAVIMGRKTWESIPLQHRPLPGRFNVVLTRSGSFDIATAENVVICGSLLSALELLAESPYCVSIEKVFVIGGGQIYREALNAPGCDAVHITEIGKHIECDTFIPALDESVFQPWYSSFPVVENNIRYCFTTYVRVRNSGVELASEANGLLSDGNSDSGKFEVQRFSFLPKPVFEKHQEYLYLRLVENIILNGVEKNDRTRTGTVSMFGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLKEKGINIWEGNGSRDYLDSIGLTHREEGDLGPIYGFQWRHFGARYTDMHADYTGQGFDQLQDVISKIKENPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFVHTIGDAHIYLNHVRPLQDQLQKLPKPFPVLKINSEKRNIDSFEAADFKLVGYDPHQKIEMKMAV 527
            MA +TL    NGSV    +PQRTYQVVVAAT++MGIGKDG LPW LPSDLKFFKDVT+TTSD +K+NAVIMGRKTWESIPL+HRPLPGR NVVLTRSGSFDIATAENVVICGS+ SAL LLAESPYC+SIEKVFVIGGGQI REALNAPGCDA+HITEI   I CDTFIPA+D SVFQPWYS FP+VENN+RY FTTYVRV+NS VE   + NGL+S    DS KFEV+  SFLPK +FEKH+E+LYLRLV++II NGV K+DRT TGT+S FGCQMRFNLRK+FPLLTTKKVFW+GVVEELLWFISGSTNAKVL+EKGI+IW+ N SRDYLDSIGL  REEGDLGPIYGFQWRHFGARYTDMHADYTGQGFDQL DVI KIK NPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGL VPFNIASYALLTCMIAHVCDLVPGDFVH IGDAH+Y  HVRPLQ+QLQKLPKPFP+LKIN +K++IDSFEAADFKL+GYDPHQKIEMKMAV
Sbjct:    1 MAGDTLMKLPNGSVNAHPDPQRTYQVVVAATRDMGIGKDGKLPWRLPSDLKFFKDVTVTTSDHVKKNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATAENVVICGSMASALVLLAESPYCLSIEKVFVIGGGQILREALNAPGCDAIHITEIETDIACDTFIPAVDASVFQPWYSFFPLVENNVRYSFTTYVRVKNSTVEPLGQTNGLMSGSCLDSAKFEVK--SFLPKMIFEKHEEHLYLRLVQDIISNGVPKDDRTGTGTLSKFGCQMRFNLRKTFPLLTTKKVFWQGVVEELLWFISGSTNAKVLQEKGIHIWDDNASRDYLDSIGLVDREEGDLGPIYGFQWRHFGARYTDMHADYTGQGFDQLLDVIGKIKNNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLSVPFNIASYALLTCMIAHVCDLVPGDFVHVIGDAHVYNTHVRPLQEQLQKLPKPFPILKINPQKKDIDSFEAADFKLIGYDPHQKIEMKMAV 525
[Close]
BLAST of XM_017359596.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AZB9 (Bifunctional dihydrofolate reductase-thymidylate synthase {ECO:0000256|PIRNR:PIRNR000389})

HSP 1 Score: 922.154 bits (2382), Expect = 0.000e+0
Identity = 436/527 (82.73%), Postives = 475/527 (90.13%), Query Frame = 0
 
Query:    1 MASETLTNPTNGSVITSSNPQRTYQVVVAATQNMGIGKDGSLPWSLPSDLKFFKDVTMTTSDPLKRNAVIMGRKTWESIPLQHRPLPGRFNVVLTRSGSFDIATAENVVICGSLLSALELLAESPYCVSIEKVFVIGGGQIYREALNAPGCDAVHITEIGKHIECDTFIPALDESVFQPWYSSFPVVENNIRYCFTTYVRVRNSGVELASEANGLLSDGNSDSGKFEVQRFSFLPKPVFEKHQEYLYLRLVENIILNGVEKNDRTRTGTVSMFGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLKEKGINIWEGNGSRDYLDSIGLTHREEGDLGPIYGFQWRHFGARYTDMHADYTGQGFDQLQDVISKIKENPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFVHTIGDAHIYLNHVRPLQDQLQKLPKPFPVLKINSEKRNIDSFEAADFKLVGYDPHQKIEMKMAV 527
            MA +TL    NGSV    +PQRTYQVVVAAT++MGIGKDG LPW LPSDLKFFKDVT+TTSD +K+NAVIMGRKTWESIPL+HRPLPGR NVVLTRSGSFDIATAENVVICGS+ SAL LLAESPYC+SIEKVFVIGGGQI REALNAPGCDA+HITEI   I CDTFIPA+D SVFQPWYS FP+VENN+RY FTTYVRV+NS VE   + NGL+S    DS KFEV++FSFLPK +FEKH+E+LYLRLV++II NGV K+DRT TGT+S FGCQMRFNLRK+FPLLTTKKVFW+GVVEELLWFISGSTNAKVL+EKGI+IW+ N SRDYLDSIGL  REEGDLGPIYGFQWRHFGARYTDMHADYTGQGFDQL DVI KIK NPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGL VPFNIASYALLTCMIAHVCDLVPGDFVH IGDAH+Y  HVRPLQ+QLQKLPKPFP+LKIN +K++IDSF AADF+LVGYDP QKI+MKMAV
Sbjct:    1 MAGDTLMKLPNGSVNAHPDPQRTYQVVVAATRDMGIGKDGKLPWRLPSDLKFFKDVTVTTSDHVKKNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATAENVVICGSMASALVLLAESPYCLSIEKVFVIGGGQILREALNAPGCDAIHITEIETDIACDTFIPAVDASVFQPWYSFFPLVENNVRYSFTTYVRVKNSTVEPLGQTNGLMSGSCLDSAKFEVKKFSFLPKMIFEKHEEHLYLRLVQDIISNGVPKDDRTGTGTLSKFGCQMRFNLRKTFPLLTTKKVFWQGVVEELLWFISGSTNAKVLQEKGIHIWDDNASRDYLDSIGLVDREEGDLGPIYGFQWRHFGARYTDMHADYTGQGFDQLLDVIGKIKNNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLSVPFNIASYALLTCMIAHVCDLVPGDFVHVIGDAHVYNTHVRPLQEQLQKLPKPFPILKINPQKKDIDSFVAADFELVGYDPQQKIKMKMAV 527
[Close]
BLAST of XM_017359596.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UZN7 (Bifunctional dihydrofolate reductase-thymidylate synthase {ECO:0000256|PIRNR:PIRNR000389})

HSP 1 Score: 921.768 bits (2381), Expect = 0.000e+0
Identity = 433/527 (82.16%), Postives = 474/527 (89.94%), Query Frame = 0
 
Query:    1 MASETLTNPTNGSVITSSNPQRTYQVVVAATQNMGIGKDGSLPWSLPSDLKFFKDVTMTTSDPLKRNAVIMGRKTWESIPLQHRPLPGRFNVVLTRSGSFDIATAENVVICGSLLSALELLAESPYCVSIEKVFVIGGGQIYREALNAPGCDAVHITEIGKHIECDTFIPALDESVFQPWYSSFPVVENNIRYCFTTYVRVRNSGVELASEANGLLSDGNSDSGKFEVQRFSFLPKPVFEKHQEYLYLRLVENIILNGVEKNDRTRTGTVSMFGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLKEKGINIWEGNGSRDYLDSIGLTHREEGDLGPIYGFQWRHFGARYTDMHADYTGQGFDQLQDVISKIKENPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFVHTIGDAHIYLNHVRPLQDQLQKLPKPFPVLKINSEKRNIDSFEAADFKLVGYDPHQKIEMKMAV 527
            MA E   N +NG+       QRTYQVVVAAT++MGIGKDG LPW LPSDLKFFKDVTMTTSD  K+NAVIMGRKTWESIPL+HRPLPGR NVVLTRSGSFDIATAENVV+CGSL SALELLA SPYC+SIEK FVIGGGQI REALNAPGCDA+H+TEI  +I+CDTFIP +D SVFQPWYSSFP+VEN+IRYCF TYVRVR+S VE   E NGL SD  S++ KFEV++FSFLPK VFE+H+E+LYLRLV++II +GV K+DRT TGT+S FGCQMRFNLRK+FPLLTTKKVFWRGVVEELLWFISGSTNAKVL+EKGI+IW+GN SRDYLDSIGL  REEGDLGP+YGFQWRHFGARYTDMHADYTGQGFDQL DVI KIK NPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVC+LVPGDF+H  GDAH+Y +HVRPLQ+QLQKLPKPFP+L IN EK+NIDSF AADFKL+GYDPH KIEMKMAV
Sbjct:    1 MAGEFKANLSNGNANVQPAAQRTYQVVVAATRDMGIGKDGKLPWRLPSDLKFFKDVTMTTSDSGKKNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATAENVVMCGSLNSALELLAASPYCLSIEKAFVIGGGQILREALNAPGCDAIHMTEIETNIDCDTFIPTVDSSVFQPWYSSFPMVENSIRYCFATYVRVRSSVVESNGENNGLSSDSGSENSKFEVKKFSFLPKMVFERHEEFLYLRLVQDIISDGVLKDDRTGTGTLSKFGCQMRFNLRKTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASRDYLDSIGLKDREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVIDKIKSNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCNLVPGDFIHVFGDAHVYSSHVRPLQEQLQKLPKPFPILMINPEKKNIDSFVAADFKLIGYDPHHKIEMKMAV 527
[Close]
BLAST of XM_017359596.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3HZ38 (Bifunctional dihydrofolate reductase-thymidylate synthase {ECO:0000256|PIRNR:PIRNR000389})

HSP 1 Score: 919.842 bits (2376), Expect = 0.000e+0
Identity = 426/509 (83.69%), Postives = 469/509 (92.14%), Query Frame = 0
 
Query:   19 NPQRTYQVVVAATQNMGIGKDGSLPWSLPSDLKFFKDVTMTTSDPLKRNAVIMGRKTWESIPLQHRPLPGRFNVVLTRSGSFDIATAENVVICGSLLSALELLAESPYCVSIEKVFVIGGGQIYREALNAPGCDAVHITEIGKHIECDTFIPALDESVFQPWYSSFPVVENNIRYCFTTYVRVRNSGVELASEANGLLSDGNSDSGKFEVQRFSFLPKPVFEKHQEYLYLRLVENIILNGVEKNDRTRTGTVSMFGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLKEKGINIWEGNGSRDYLDSIGLTHREEGDLGPIYGFQWRHFGARYTDMHADYTGQGFDQLQDVISKIKENPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFVHTIGDAHIYLNHVRPLQDQLQKLPKPFPVLKINSEKRNIDSFEAADFKLVGYDPHQKIEMKMAV 527
            +PQRT+Q+VVAAT+++GIGKDG LPW LPSDLKFFKDVT+TTSD  K+NAVIMGRKTWESIPLQHRPLPGR NVVLTRSGSFDIATAENVVICGS+ SALELLA SPYC+SIEKVFVIGGGQI+RE+LNAPGCDA+HITEI   IECDTF+PA+D SVFQPWYSSFPVVENNIRYCFTTYVRVRNS VE  S+ N  + D    + KFE+Q+FSFLPK +FEKH+EYLYL++V++II +G  K+DRT TGT+S FGCQMRFNLR++FPLLTTKKVFWRGVVEELLWFISGSTNAKVL+EKGI+IW+GN SRDYLDSIGLT REEGDLGP+YGFQWRHFGARYTDMHADYTGQGFDQL DVI KIK NP+DRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQ YQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFVH +GD H+Y NHVRPLQ+QLQKLPKPFP+LKIN EK+NIDSF A+DFKLVGYDPH+KIEMKMAV
Sbjct:   21 DPQRTFQIVVAATKDLGIGKDGKLPWKLPSDLKFFKDVTLTTSDSGKKNAVIMGRKTWESIPLQHRPLPGRLNVVLTRSGSFDIATAENVVICGSMASALELLAASPYCLSIEKVFVIGGGQIFRESLNAPGCDAIHITEIETRIECDTFMPAIDSSVFQPWYSSFPVVENNIRYCFTTYVRVRNSAVENLSQNNDKILDSIPATSKFEIQKFSFLPKMIFEKHEEYLYLKMVQDIIADGNLKDDRTGTGTLSKFGCQMRFNLRRTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASRDYLDSIGLTDREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVIDKIKNNPNDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQTYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFVHVLGDTHVYSNHVRPLQEQLQKLPKPFPILKINPEKKNIDSFVASDFKLVGYDPHEKIEMKMAV 529
[Close]
BLAST of XM_017359596.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7H2N9 (Bifunctional dihydrofolate reductase-thymidylate synthase {ECO:0000256|PIRNR:PIRNR000389})

HSP 1 Score: 919.457 bits (2375), Expect = 0.000e+0
Identity = 436/523 (83.37%), Postives = 473/523 (90.44%), Query Frame = 0
 
Query:    5 TLTNPTNGSVITSSNPQRTYQVVVAATQNMGIGKDGSLPWSLPSDLKFFKDVTMTTSDPLKRNAVIMGRKTWESIPLQHRPLPGRFNVVLTRSGSFDIATAENVVICGSLLSALELLAESPYCVSIEKVFVIGGGQIYREALNAPGCDAVHITEIGKHIECDTFIPALDESVFQPWYSSFPVVENNIRYCFTTYVRVRNSGVELASEANGLLSDGNSDSGKFEVQRFSFLPKPVFEKHQEYLYLRLVENIILNGVEKNDRTRTGTVSMFGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLKEKGINIWEGNGSRDYLDSIGLTHREEGDLGPIYGFQWRHFGARYTDMHADYTGQGFDQLQDVISKIKENPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFVHTIGDAHIYLNHVRPLQDQLQKLPKPFPVLKINSEKRNIDSFEAADFKLVGYDPHQKIEMKMAV 527
            TL N  NG + T  +PQRTYQVVVAATQNMGIGKDG LPW LPSDLKFFKDVTMTTSDP+K+NAVIMGRKTWESIPL+HRPLPGR NVVLTRSGSFDIATAENVVICGS+ SALELLA SPYC+SIEKVFVIGGGQI REALNAPGCDA+HITEI  +IECDTFIPA+D SVF PWYSSFP+VENNIRY FTTYVRV+N  +E  S+ANGL SD + +  KFEV++FSFLPK +FEKH+EYLYLRLV++II +G  K+DRT TGT+S FGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKVL+ KGI+IW+GN SRDYLDSIGL  REEGDLGP+YGFQWRHFGARYT+MHADYTG GFDQL DVI KIK  PDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASY+LLT MIAHVCDLVPGDFVH IGDAH+Y  HVRPLQ+QLQKLPKPFP+LKIN EK++IDSF A DFKL+ YDPHQKIEMKMAV
Sbjct:   56 TLVNVPNGILNTIPDPQRTYQVVVAATQNMGIGKDGKLPWKLPSDLKFFKDVTMTTSDPVKKNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATAENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILREALNAPGCDAIHITEIETNIECDTFIPAVDMSVFLPWYSSFPLVENNIRYSFTTYVRVKNITIEPLSQANGLKSDNSLNFDKFEVKKFSFLPKMIFEKHEEYLYLRLVQDIISDGTSKDDRTGTGTLSKFGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQGKGIHIWDGNASRDYLDSIGLVDREEGDLGPVYGFQWRHFGARYTNMHADYTGLGFDQLSDVIDKIKNKPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYSLLTFMIAHVCDLVPGDFVHVIGDAHVYRTHVRPLQEQLQKLPKPFPILKINPEKKDIDSFVADDFKLMCYDPHQKIEMKMAV 578
Match NameStatsDescription
A0A6L5BBW4E-Value: 0.000e+0, PID: 92.41Bifunctional dihydrofolate reductase-thymidylate s... [more]
Q39687E-Value: 0.000e+0, PID: 87.12Bifunctional dihydrofolate reductase-thymidylate s... [more]
P45350E-Value: 0.000e+0, PID: 87.12Bifunctional dihydrofolate reductase-thymidylate s... [more]
A0A5J5BWE1E-Value: 0.000e+0, PID: 83.11Bifunctional dihydrofolate reductase-thymidylate s... [more]
A0A5B7B3A0E-Value: 0.000e+0, PID: 83.87Bifunctional dihydrofolate reductase-thymidylate s... [more]
A0A5B7AZH1E-Value: 0.000e+0, PID: 83.11Bifunctional dihydrofolate reductase-thymidylate s... [more]
A0A5B7AZB9E-Value: 0.000e+0, PID: 82.73Bifunctional dihydrofolate reductase-thymidylate s... [more]
A0A2C9UZN7E-Value: 0.000e+0, PID: 82.16Bifunctional dihydrofolate reductase-thymidylate s... [more]
A0A1R3HZ38E-Value: 0.000e+0, PID: 83.69Bifunctional dihydrofolate reductase-thymidylate s... [more]
A0A7J7H2N9E-Value: 0.000e+0, PID: 83.37Bifunctional dihydrofolate reductase-thymidylate s... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.