XM_017398995.1

Resource Type: 
Polypeptide
Name: 
XM_017398995.1
Identifier: 
XM_017398995.1-protein
Sequence: 
MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSL
GPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRV
VDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGH
EDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQA
KAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVEN
TVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQE
DFVDACAGLTYARVEGKA
Sequence Length: 
318
Sequence Checksum: 
fb1e83a60add8fb7ec00b4e6a0134123
View location in JBrowse: 
DCARv2_Chr6:3383522..3384478+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017398995.1, derives from mRNA, XM_017398995.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017398995.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017398995.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5B8U1 (PLCXc domain-containing protein {ECO:0000259|SMART:SM00148})

HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0
Identity = 291/318 (91.51%), Postives = 304/318 (95.60%), Query Frame = 0
 
Query:    1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
            MG QVTKQVDRRKAISVEKKTL +L ESSGTDFPGS Y PADRK WM+ LGPEKM INKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRV+D+RVQEDRKVCHGVLLTYGIDVV+KDVKKFLSETESEIIILEIRTEFGH+DPPEFEKYLEGELGE L+HQDDHVF KTI+E+LPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESN+KHLGEQQ VTSRKFFYRVENTVTPQADNPILCVKPVTNRIH+YHRLFI+QCFSRGIADRLQIFSTDFI+EDFVDAC GLTYARVEG  
Sbjct:    1 MGAQVTKQVDRRKAISVEKKTLYSLHESSGTDFPGSTYSPADRKKWMAGLGPEKMHINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVIDVRVQEDRKVCHGVLLTYGIDVVIKDVKKFLSETESEIIILEIRTEFGHDDPPEFEKYLEGELGEFLIHQDDHVFGKTISELLPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNIKHLGEQQPVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHNYHRLFIAQCFSRGIADRLQIFSTDFIEEDFVDACVGLTYARVEGNT 318
[Close]
BLAST of XM_017398995.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4AW64 ((PI-PLC X-box domain-containing protein DDB_G0293730 {ECO:0000313|RefSeq:XP_015893466.1}))

HSP 1 Score: 560.066 bits (1442), Expect = 0.000e+0
Identity = 259/318 (81.45%), Postives = 285/318 (89.62%), Query Frame = 0
 
Query:    1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
            MG Q++KQ DRRK+IS EKKTLC L  S G DFPGSDYRP+DRK WM+ L PEK+ INKIVWPGTHDSATNKIG P ITRPFAQCQSLSIYQQLVRG RV+DIR+QEDR+VCHG+LLTY +DVV+ DVKKFLSET+SEIIILEIRTEFGHEDPP+F+KYLE  LGE L+HQDDHVF KTIAE+LPKR+IC+WKPRKSPQ KAG P W SG+LKDNWIDTDLPSTKF+SN+KHL EQ AV+SRKFFYRVENTVTPQADNP+LCVKPVTNRIH Y RLFI+QCFS+G ADRLQI STDFI EDFVDAC GLTYARVEGKA
Sbjct:    1 MGSQISKQRDRRKSISTEKKTLCDLKGSCGQDFPGSDYRPSDRKNWMAGLNPEKVHINKIVWPGTHDSATNKIGFPCITRPFAQCQSLSIYQQLVRGARVLDIRIQEDRRVCHGILLTYSVDVVISDVKKFLSETQSEIIILEIRTEFGHEDPPDFDKYLEERLGEFLIHQDDHVFGKTIAELLPKRVICIWKPRKSPQPKAGGPLWGSGHLKDNWIDTDLPSTKFDSNLKHLSEQAAVSSRKFFYRVENTVTPQADNPVLCVKPVTNRIHGYARLFITQCFSKGCADRLQILSTDFIDEDFVDACVGLTYARVEGKA 318
[Close]
BLAST of XM_017398995.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BTE3 (PLCXc domain-containing protein {ECO:0000259|SMART:SM00148})

HSP 1 Score: 559.296 bits (1440), Expect = 0.000e+0
Identity = 256/318 (80.50%), Postives = 285/318 (89.62%), Query Frame = 0
 
Query:    1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
            MG QV+KQV RRKAIS EKKTLC L +S G +FPG+DYRP DRK WMS L PEK+ +NKIVWPGTHDSATNKIGIP I+RPFAQCQSLSIY QLVRGTRV+D+RVQEDR++CHG+LLTY IDVV++D+KKFLSET+SEIIILEIRTEFGH+DPP+F+KYLE +LGE L+HQDDHVF KTIAE+LPKRIICVWKPRKSPQ +AG P WS+GYLKDNWIDTDLPSTKFESNMKHL EQ  VTSRKFFYRVENTVTPQADNP+LCVKPVT RIH Y RLFI++C SRG  DRLQIFSTDFI EDFVDAC G T+AR+EGKA
Sbjct:  616 MGAQVSKQVGRRKAISTEKKTLCNLQQSCGHEFPGNDYRPPDRKNWMSGLNPEKIHLNKIVWPGTHDSATNKIGIPFISRPFAQCQSLSIYHQLVRGTRVLDVRVQEDRRICHGILLTYSIDVVIEDIKKFLSETQSEIIILEIRTEFGHQDPPDFDKYLEDQLGEYLIHQDDHVFGKTIAELLPKRIICVWKPRKSPQPQAGGPLWSAGYLKDNWIDTDLPSTKFESNMKHLSEQPPVTSRKFFYRVENTVTPQADNPVLCVKPVTGRIHGYARLFINECMSRGCGDRLQIFSTDFIDEDFVDACVGFTHARIEGKA 933
[Close]
BLAST of XM_017398995.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5EWV3 ((Phosphatidylinositol-4, 5-bisphosphate phosphodiesterase gamma {ECO:0000313|EMBL:PON90027.1}))

HSP 1 Score: 555.444 bits (1430), Expect = 0.000e+0
Identity = 254/318 (79.87%), Postives = 287/318 (90.25%), Query Frame = 0
 
Query:    1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
            MG QV+KQV+RRKAIS EKK L  L E SG DFPGSDYRP+DRK WMS L PEK+ +N+IVWPGTHDSATNKIGIP ++RPFAQCQSLSIYQQL RGTRV+DIRVQEDR+VCHG+L TY +DVV+KDVK+FL ET+SEII+LEIRTEFGH+DPPEFEKYLE +LGE L+HQD+HVF KT+AE+LPKR+ICVWKPRKSPQ KAGSPFW SG LKDNWIDTDLPSTKF+SN+KHLGEQ  V+SRKFFYRVENTVTPQADNP+LCVKPVT RIH Y RLFI+QCF++G+ DRLQIFSTDFI EDFVDAC GLT+AR+EGKA
Sbjct:    1 MGSQVSKQVERRKAISTEKKVLVDLHEKSGEDFPGSDYRPSDRKNWMSELNPEKLHVNQIVWPGTHDSATNKIGIPLVSRPFAQCQSLSIYQQLARGTRVLDIRVQEDRRVCHGILATYSVDVVIKDVKRFLGETQSEIILLEIRTEFGHDDPPEFEKYLEEQLGEFLIHQDEHVFGKTVAELLPKRVICVWKPRKSPQPKAGSPFWHSGQLKDNWIDTDLPSTKFDSNLKHLGEQPPVSSRKFFYRVENTVTPQADNPVLCVKPVTGRIHGYARLFIAQCFAKGVGDRLQIFSTDFIDEDFVDACVGLTHARIEGKA 318
[Close]
BLAST of XM_017398995.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R6W8 ((1-phosphatidylinositol phosphodiesterase {ECO:0000313|EMBL:PSS21741.1}))

HSP 1 Score: 554.288 bits (1427), Expect = 0.000e+0
Identity = 257/318 (80.82%), Postives = 283/318 (88.99%), Query Frame = 0
 
Query:    1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
            MGGQV+ Q+++RKAIS EKKTLC L +  G +FPG DYRP DRK WMS L PEK+ +NKIVWPGTHDSATNKIGIP ++RPFAQCQSLSIY QLVRGTRV+DIRVQEDR+VCHG+LLTYG+DVVL D+KKFLSET+SEIIILEIRTEFGHEDPPEF+KYLE +LGE L+HQDDHVF+KTIAE+LPKR+ICVWKPRKSPQ K G P WS GYLKDNWIDTDLPSTKFESN+KHLGEQ  V SRKFFYRVENTVTPQADNP+LCV+PVT RIH Y RLFI+QCFSRG ADRLQI STDFI EDFVDAC GLT ARVEGK 
Sbjct:    1 MGGQVSTQMEKRKAISTEKKTLCDLQQGCGKEFPGCDYRPPDRKNWMSVLNPEKVHLNKIVWPGTHDSATNKIGIPFVSRPFAQCQSLSIYHQLVRGTRVIDIRVQEDRRVCHGILLTYGVDVVLNDIKKFLSETQSEIIILEIRTEFGHEDPPEFDKYLEDQLGEFLIHQDDHVFEKTIAELLPKRVICVWKPRKSPQPKPGGPLWSGGYLKDNWIDTDLPSTKFESNLKHLGEQPPVVSRKFFYRVENTVTPQADNPVLCVRPVTGRIHGYVRLFITQCFSRGFADRLQILSTDFIDEDFVDACVGLTQARVEGKV 318
[Close]
BLAST of XM_017398995.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AGD9 ((uncharacterized protein LOC110417799 {ECO:0000313|RefSeq:XP_021286008.1}))

HSP 1 Score: 554.288 bits (1427), Expect = 0.000e+0
Identity = 257/318 (80.82%), Postives = 287/318 (90.25%), Query Frame = 0
 
Query:    1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
            MG QV+KQ +RRKAIS EKKTLC L +S G  FPGSDYRPADRK WM+ LGPEK+ INKIVWPGTHDSATNKIGIP I+RPFAQCQSLSIYQQLV+GTRV+D+RV E+R+VCHG+L TY +DVV+ DVKKFLSET+SEIIILEIRTEFGH+DPP+F+KYLE +LGE L+HQDDHVF KTIAE+LPKRIICVWKP KSP+ KAGSPFWS+ YLKDNWIDTDLPSTKF+SNMKHLGEQQ V+SRKFFYRVENTVTPQADNP+LCVKPVT RIH Y RLFI+QCFS+G ADRLQIFSTDFI EDF+DAC G T+ARVEGK 
Sbjct:    1 MGSQVSKQKERRKAISTEKKTLCDLHDSCGETFPGSDYRPADRKNWMAGLGPEKVHINKIVWPGTHDSATNKIGIPCISRPFAQCQSLSIYQQLVKGTRVLDVRVNENRRVCHGILSTYSVDVVINDVKKFLSETQSEIIILEIRTEFGHQDPPDFDKYLEEKLGEFLIHQDDHVFGKTIAELLPKRIICVWKPNKSPKPKAGSPFWSANYLKDNWIDTDLPSTKFDSNMKHLGEQQPVSSRKFFYRVENTVTPQADNPVLCVKPVTGRIHGYARLFITQCFSKGCADRLQIFSTDFIDEDFLDACVGFTHARVEGKC 318
[Close]
BLAST of XM_017398995.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N0ZZZ2 (PLCXc domain-containing protein {ECO:0000259|SMART:SM00148})

HSP 1 Score: 553.903 bits (1426), Expect = 0.000e+0
Identity = 256/318 (80.50%), Postives = 285/318 (89.62%), Query Frame = 0
 
Query:    1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
            MG QVTKQV++RK IS EKK LC L E+ G DFPGSDY P+DRK WM+ L PEK+ I++IVWPGTHDSATNKIG+PGITRPFAQCQSLSIY QLVRGTRV+DIRVQE+RKVCHGVL+TYGIDVVL DVKKFL ET+SEIIILEIRTEFGHEDPPEFEKYLE +LGELL+HQDD VF KTIAE+LPKR+ICVWKPRK+PQ + G P W SGYLKDNWIDTDLPSTKFESN+KHL EQQ V+SRKFFYRVENTVTP+ DNP+LCV+PVT RIH Y RLFI+QCF+RG AD+LQ+FSTDFI EDFVDAC GLTYAR+EGKA
Sbjct:    1 MGAQVTKQVEKRKTISTEKKALCDLYENCGQDFPGSDYHPSDRKNWMAGLDPEKVHISQIVWPGTHDSATNKIGVPGITRPFAQCQSLSIYDQLVRGTRVLDIRVQENRKVCHGVLVTYGIDVVLNDVKKFLGETQSEIIILEIRTEFGHEDPPEFEKYLEDQLGELLIHQDDQVFGKTIAEVLPKRVICVWKPRKAPQPRHGGPLWGSGYLKDNWIDTDLPSTKFESNLKHLSEQQPVSSRKFFYRVENTVTPKPDNPVLCVRPVTGRIHGYARLFITQCFARGSADKLQVFSTDFIDEDFVDACIGLTYARIEGKA 318
[Close]
BLAST of XM_017398995.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RHJ6 ((1-phosphatidylinositol phosphodiesterase {ECO:0000313|EMBL:PSS29506.1}))

HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0
Identity = 256/318 (80.50%), Postives = 283/318 (88.99%), Query Frame = 0
 
Query:    1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
            MGGQV+ Q+++RKAIS EKKTLC L +  G +FPG DYRP DRK WMS L PEK+ +NKIVWPGTHDSATNKIGIP ++RPFAQCQSLSIY QLVRGTRV+DIRVQEDR+VCHG+LLTYG+DVVL D+KKF SET+SEIIILEIRTEFGHEDPPEF+KYLE +LGE L+HQDDHVF+KTIAE+LPKR+ICVWKPRKSPQ K G P WS GYLKDNWIDTDLPSTKFESN+K+LGEQQ V SRKFFYRVENTVTPQADNP+LCV+PVT RIH Y RLFI+QCFSRG ADRLQI STDFI EDFVDAC GLT ARVEGK 
Sbjct:    1 MGGQVSTQMEKRKAISTEKKTLCDLQQGCGKEFPGCDYRPPDRKNWMSGLNPEKVHLNKIVWPGTHDSATNKIGIPFVSRPFAQCQSLSIYHQLVRGTRVIDIRVQEDRRVCHGILLTYGVDVVLNDIKKFFSETQSEIIILEIRTEFGHEDPPEFDKYLEEQLGEFLIHQDDHVFEKTIAELLPKRVICVWKPRKSPQPKPGGPLWSGGYLKDNWIDTDLPSTKFESNLKYLGEQQPVVSRKFFYRVENTVTPQADNPVLCVRPVTGRIHGYARLFITQCFSRGCADRLQILSTDFIDEDFVDACVGLTQARVEGKV 318
[Close]
BLAST of XM_017398995.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0F7N4 ((PLC-like phosphodiesterases superfamily protein {ECO:0000313|EMBL:GFY94593.1}))

HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0
Identity = 256/318 (80.50%), Postives = 282/318 (88.68%), Query Frame = 0
 
Query:    1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
            MGGQV+ Q+++RKAIS EKK LC L +  G +FPG DYRP DRK WMS L PEK+ +NKIVWPGTHDSATNKIGIP ++RPFAQCQSLSIY QLVRGTRV+DIRVQEDR+VCHG+LLTYG+DVVL D+KKFLSET+SEIIILEIRTEFGHEDPPEF+KYLE +LGE L+HQDDHVF+KTIAE+LPKR+ICVWKPRKSPQ K G P WS GYLKDNWIDTDLPSTKFESN+KHLGEQ  V SRKFFYRVENTVTPQADNP+LCV+PVT RIH Y RLFI+QCFSRG ADRLQI STDFI EDFVDAC GLT ARVEGK 
Sbjct:    1 MGGQVSTQMEKRKAISTEKKNLCDLQQGCGKEFPGCDYRPPDRKNWMSGLNPEKVHLNKIVWPGTHDSATNKIGIPFVSRPFAQCQSLSIYHQLVRGTRVIDIRVQEDRRVCHGILLTYGVDVVLNDIKKFLSETQSEIIILEIRTEFGHEDPPEFDKYLEDQLGEFLIHQDDHVFEKTIAELLPKRVICVWKPRKSPQPKPGGPLWSGGYLKDNWIDTDLPSTKFESNLKHLGEQPPVVSRKFFYRVENTVTPQADNPVLCVRPVTGRIHGYARLFITQCFSRGFADRLQILSTDFIDEDFVDACVGLTQARVEGKV 318
[Close]
BLAST of XM_017398995.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5C1X0 ((Phosphatidylinositol-4, 5-bisphosphate phosphodiesterase gamma {ECO:0000313|EMBL:PON55073.1}))

HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0
Identity = 252/318 (79.25%), Postives = 286/318 (89.94%), Query Frame = 0
 
Query:    1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
            MG QV+KQV+RRKAIS EKK L  L E +G DFPGSDYRP+DRK WM+ L PEK+ +N+IVWPGTHDSATNKIGIP ++RPFAQCQSLSIYQQL RGTRV+DIRVQEDR+VCHG+L TY +DVV+KDVK+FL ET+SEII+LEIRTEFGH+DPPEFEKYLE ELGE L+HQD+HVF KT+AE+LPKR+ICVWKPRKSPQ KAGSPFW SG LKDNWIDTDLPSTKF+SN+KHLGEQ  V+SRKFFYRVENTVTPQADNP+LCVKPVT RIH Y RLFISQCF++ + DRLQIFSTDFI EDFVDAC GLT+AR+EG+A
Sbjct:    1 MGSQVSKQVERRKAISTEKKVLVDLHEKTGEDFPGSDYRPSDRKNWMNELNPEKLHVNQIVWPGTHDSATNKIGIPLVSRPFAQCQSLSIYQQLARGTRVLDIRVQEDRRVCHGILATYSVDVVIKDVKRFLGETKSEIILLEIRTEFGHDDPPEFEKYLEEELGEFLIHQDEHVFNKTVAELLPKRVICVWKPRKSPQPKAGSPFWHSGQLKDNWIDTDLPSTKFDSNLKHLGEQPPVSSRKFFYRVENTVTPQADNPVLCVKPVTGRIHGYARLFISQCFAKSVGDRLQIFSTDFIDEDFVDACVGLTHARIEGRA 318
Match NameStatsDescription
A0A6L5B8U1E-Value: 0.000e+0, PID: 91.51PLCXc domain-containing protein {ECO:0000259|SMART... [more]
A0A6P4AW64E-Value: 0.000e+0, PID: 81.45(PI-PLC X-box domain-containing protein DDB_G02937... [more]
A0A5J5BTE3E-Value: 0.000e+0, PID: 80.50PLCXc domain-containing protein {ECO:0000259|SMART... [more]
A0A2P5EWV3E-Value: 0.000e+0, PID: 79.87(Phosphatidylinositol-4, 5-bisphosphate phosphodie... [more]
A0A2R6R6W8E-Value: 0.000e+0, PID: 80.82(1-phosphatidylinositol phosphodiesterase {ECO:000... [more]
A0A6J1AGD9E-Value: 0.000e+0, PID: 80.82(uncharacterized protein LOC110417799 {ECO:0000313... [more]
A0A7N0ZZZ2E-Value: 0.000e+0, PID: 80.50PLCXc domain-containing protein {ECO:0000259|SMART... [more]
A0A2R6RHJ6E-Value: 0.000e+0, PID: 80.50(1-phosphatidylinositol phosphodiesterase {ECO:000... [more]
A0A7J0F7N4E-Value: 0.000e+0, PID: 80.50(PLC-like phosphodiesterases superfamily protein {... [more]
A0A2P5C1X0E-Value: 0.000e+0, PID: 79.25(Phosphatidylinositol-4, 5-bisphosphate phosphodie... [more]
back to top
Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.