XM_017359327.1

Resource Type: 
Polypeptide
Name: 
XM_017359327.1
Identifier: 
XM_017359327.1-protein
Sequence: 
MAASSESIAPCLSVSEDNAAATKSSASSSPWMKPVNGVVEPVMGRDSWPT
ITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQKADTNGS
PNSSNHNAHPHPVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTPPPFPIPF
GLLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGN
YGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHMHQMAPPPPPPPR
FMRPGLPGSTPFIPLPHVYGNPMPFEFVRPILYGPPLPPESLRGVPLIPS
QVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNI
SVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSR
QVDPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLEVFP
GKISGEATSSQTKVGNGVDTAGEV
Sequence Length: 
474
Sequence Checksum: 
feb769bfce060b3adc95c0bae9a145d6
View location in JBrowse: 
DCARv2_Chr6:3479971..3492846+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017359327.1, derives from mRNA, XM_017359327.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017359327.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017359327.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YW52 ((Putative la-related protein 1C-like {ECO:0000313|EMBL:MPA35878.1}))

HSP 1 Score: 347.821 bits (891), Expect = 7.957e-112
Identity = 222/457 (48.58%), Postives = 291/457 (63.68%), Query Frame = 0
 
Query:   31 WMKPVNGVVE--PVMGRD-SWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQK-ADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTPPPFP-----IPFG-LLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHM-HQMAPPPPPPPRFMRPGLPGSTPFIPLPHV--YGNPMPFEFVRPILYGPPLPPESLRGVPLIPSQVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQVDPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLEVFPGKISGEATSSQTKVGNGVDTAGEV 474
            W KP+NGVVE  PVMG   SWP ++ESTR      S       ++   S  SVS+S+G V S++ QK  +TN +PN + +  H  PVRQR  KRGGG+ GGS QS F+RP PP P P P P     +P+G L+P + DL  +EPP+KGN W++RP+GG   Q + GND  S R+ SRR N+G RPRGDG ++N + GRRDQDR+WN  R+S  RDVH+ HQMAPP     R  RP   GSTPFIP   V  +GNP+ F+   P  Y P   PES R V  +   +  P+ FP +DP+LP+LL++QIDYYFSD NL+KD+FL+S MD+QGWV I++IA+F RV  LT+N+ LILD+L  STVVEVQGDK+RR + W+KWIS S +   DS        +  +L TS + + LDE   ++   ++  D+H EV PG+ S E    Q K+ NG  T  E 
Sbjct:  115 WNKPLNGVVEVGPVMGGAVSWPALSESTRPSPKPSS------DSSKPISDGSVSISQGPVISHSPQKQVNTNANPNFTPN--HTLPVRQRSMKRGGGSGGGSAQSNFTRPPPPPPPPLPPPFPLFDVPYGTLVPALPDLSPKEPPYKGNNWDTRPIGGFVPQPHAGNDQPSHRNSSRRSNFGPRPRGDGPYHNSNVGRRDQDRDWNGSRSSNVRDVHLQHQMAPP-----RGFRPPPLGSTPFIPTQPVRSFGNPINFDMTSPYFYVPTPHPESFRAVQFVAPALQQPMYFPVLDPHLPTLLISQIDYYFSDANLIKDDFLKSNMDDQGWVPITLIASFPRVQHLTNNIHLILDSLRASTVVEVQGDKVRRHNEWRKWISFSDRFPTDSGPLYSGGSVYNMLPTSFRKVALDEVTINRNSVIDKADSHTEVDPGRCSSEELIGQPKLANGEGTKEEA 558
[Close]
BLAST of XM_017359327.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YVQ8 ((Putative la-related protein 1C-like {ECO:0000313|EMBL:MPA35877.1}))

HSP 1 Score: 346.665 bits (888), Expect = 2.182e-111
Identity = 229/498 (45.98%), Postives = 307/498 (61.65%), Query Frame = 0
 
Query:    1 MAASSESIAPCLSVSEDNAAATKSSASSS-----------PWMKPVNGVVE--PVMGRD-SWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQK-ADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTPPPFP-----IPFG-LLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHM-HQMAPPPPPPPRFMRPGLPGSTPFIPLPHV--YGNPMPFEFVRPILYGPPLPPESLRGVPLIPSQVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQVDPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLEVFPGKISGEATSSQTKVGNGVDTAGEV 474
             +  S S AP ++ ++++AA T+   S S            W KP+NG VE  PVMG   +WP ++ESTR      S       ++   S  SVS+S+G V S++ QK  +TN +PN + +  H  PVRQR  KRGGG+ GGS QS F+RP PP P P P P     +P+G L+P + DL  +EPP+KGN W++RP+GG   Q + GND  S R+ SRR N+G RPRGDG ++N + GRRDQDR+WN  R+S  RDVH+ HQMAPP     R  RP   GSTPFIP   V  +GNP+ F+   P  Y P   PES R V  +   +  P+ FP +DP+LP+LL++QIDYYFSD NL+KD+FL+S MD+QGWV I++IA+F RV  LT+N+ LILD+L  STVVEVQGDK+RR + W+KWIS S +   DS        +  +L TS + + LDE   ++   ++  D+H EV PG+ S E    Q K+ NG  T  E 
Sbjct:   73 FSDCSASKAPSMA-ADNSAAETQLENSDSNNSNVGHPKRPAWNKPLNGEVEAGPVMGGAVTWPALSESTRPSPKPSS------DSSKPISDGSVSISQGPVISHSPQKQVNTNANPNFTPN--HTLPVRQRSMKRGGGSGGGSAQSNFTRPPPPPPPPLPPPFPLFDVPYGTLVPALPDLSPKEPPYKGNNWDTRPIGGFVPQPHAGNDQPSHRNSSRRSNFGPRPRGDGPYHNSNVGRRDQDRDWNGSRSSNVRDVHLQHQMAPP-----RGFRPPPLGSTPFIPTQPVRSFGNPINFDMTSPYFYVPTPHPESFRAVQFVAPALQQPMYFPVLDPHLPTLLISQIDYYFSDANLIKDDFLKSNMDDQGWVPITLIASFPRVQHLTNNIHLILDSLRASTVVEVQGDKVRRHNEWRKWISFSDRFPTDSGPLYSGGSVYNMLPTSFRKVALDEVTINRNSVIDKADSHTEVDPGRCSSEELIGQPKLANGEGTKEEA 556
[Close]
BLAST of XM_017359327.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YWY6 ((Putative la-related protein 1C-like {ECO:0000313|EMBL:MPA35876.1}))

HSP 1 Score: 343.969 bits (881), Expect = 2.534e-110
Identity = 225/456 (49.34%), Postives = 294/456 (64.47%), Query Frame = 0
 
Query:   31 WMKPVNGVVE--PVMGRD-SWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQK-ADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTPPPF---PIPFG-LLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHM-HQMAPPPPPPPRFMRPGLPGSTPF-IPLP-HVYGNPMPFEFVRPILYGPPLPPESLRGVPLIPSQVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQV-DPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLEVFPGKISGEATSSQTKVGNGVDTAGEV 474
            W KP+NGVVE  PVMG   SWP ++ESTR       S  P   ++   S  SVS+S+G V S++ QK  +TN +PN + +  H  PVRQR  KRGGG   GS QS F+RP PP P PPPF    +P+G L+P + DL  REP ++ N WE+RP+GG   +S+ GNDH SQR+ SRR N+G RPRGDG ++N +G RR+QDR+W+  R+S  RDV++ HQ+ PP      F RP  PGS+PF IP P   +GN M F+   P LY   LPPES R VP +    PP + FP +DP+LP+LLV+QI+YYFSD NL+KD+FL+S MD++GWV I++IA+F RV  LT N+QLIL +L  ST VEVQGDK+RRR+ W+KWI  S Q    DS   SP      +L TS Q +TLDE+  +    +   D H+E  PG+ S E  + Q+K+ NG  T  E 
Sbjct:  115 WNKPLNGVVEVGPVMGGAVSWPALSESTR------PSPKPSSDSSKPISDGSVSISQGPVISHSPQKQVNTNANPNFTPN--HTLPVRQRSMKRGGG---GSAQSNFTRPPPPPPLPPPFPLFEVPYGTLVPAVPDLSPREPLYRSNNWETRPIGGFVPKSHAGNDHPSQRNSSRRSNFGPRPRGDGSYHNNYGSRRNQDRDWSAARSSNVRDVNVQHQIHPPR----SFGRPPPPGSSPFTIPQPVRSFGNSMSFDMTSPFLYVSTLPPESFRSVPFVGPAPPPTMFFPVLDPSLPTLLVHQIEYYFSDANLIKDDFLKSNMDDEGWVPITLIASFPRVQHLTYNIQLILHSLRASTAVEVQGDKVRRRNEWRKWIPASGQFPTDDSGSHSPNGSGYSMLATSFQKVTLDEATINHNSAMGKADPHIEAAPGRCSSEELTGQSKLANGEGTNEEA 555
[Close]
BLAST of XM_017359327.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YW18 ((Putative la-related protein 1C-like {ECO:0000313|EMBL:MPA35875.1}))

HSP 1 Score: 342.428 bits (877), Expect = 1.195e-109
Identity = 224/456 (49.12%), Postives = 293/456 (64.25%), Query Frame = 0
 
Query:   31 WMKPVNGVVE--PVMGRD-SWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQK-ADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTPPPF---PIPFG-LLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHM-HQMAPPPPPPPRFMRPGLPGSTPFI-PLP-HVYGNPMPFEFVRPILYGPPLPPESLRGVPLIPSQVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQV-DPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLEVFPGKISGEATSSQTKVGNGVDTAGEV 474
            W KP+NGVVE  PVMG   SWP ++ESTR       S  P   ++   S  SVS+S+G V S++ QK  +TN +PN + +  H  PVRQR  KRGGG   GS QS F+RP PP P PPPF    +P+G L+P + DL  REP ++ N WE+RP+GG   +S+ GNDH SQR+ SRR N+G RPRGDG ++N +G RR+QDR+W+  R+S  RDV++ HQ+ PP      F RP  PGS+PF  P P   +GN M F+   P LY   LPPES R VP +    PP + FP +DP+LP+LLV+QI+YYFSD NL+KD+FL+S MD++GWV I++IA+F RV  LT N+QLIL +L  ST VEVQGDK+RRR+ W+KWI  S Q    DS   SP      +L TS Q +TLDE+  +    +   D H+E  PG+ S E  + Q+K+ NG  T  E 
Sbjct:  115 WNKPLNGVVEVGPVMGGAVSWPALSESTR------PSPKPSSDSSKPISDGSVSISQGPVISHSPQKQVNTNANPNFTPN--HTLPVRQRSMKRGGG---GSAQSNFTRPPPPPPLPPPFPLFEVPYGTLVPAVPDLSPREPLYRSNNWETRPIGGFVPKSHAGNDHPSQRNSSRRSNFGPRPRGDGSYHNNYGSRRNQDRDWSAARSSNVRDVNVQHQIHPPR----SFGRPPPPGSSPFTTPQPVRSFGNSMSFDMTSPFLYVSTLPPESFRSVPFVGPAPPPTMFFPVLDPSLPTLLVHQIEYYFSDANLIKDDFLKSNMDDEGWVPITLIASFPRVQHLTYNIQLILHSLRASTAVEVQGDKVRRRNEWRKWIPASGQFPTDDSGSHSPNGSGYSMLATSFQKVTLDEATINHNSAMGKADPHIEAAPGRCSSEELTGQSKLANGEGTNEEA 555
[Close]
BLAST of XM_017359327.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YW41 ((Putative la-related protein 1C-like {ECO:0000313|EMBL:MPA35879.1}))

HSP 1 Score: 342.043 bits (876), Expect = 1.492e-109
Identity = 223/456 (48.90%), Postives = 293/456 (64.25%), Query Frame = 0
 
Query:   31 WMKPVNGVVE--PVMGRD-SWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQK-ADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTPPPF---PIPFG-LLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHM-HQMAPPPPPPPRFMRPGLPGSTPF-IPLP-HVYGNPMPFEFVRPILYGPPLPPESLRGVPLIPSQVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQV-DPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLEVFPGKISGEATSSQTKVGNGVDTAGEV 474
            W KP+NG VE  PVMG   +WP ++ESTR       S  P   ++   S  SVS+S+G V S++ QK  +TN +PN + +  H  PVRQR  KRGGG   GS QS F+RP PP P PPPF    +P+G L+P + DL  REP ++ N WE+RP+GG   +S+ GNDH SQR+ SRR N+G RPRGDG ++N +G RR+QDR+W+  R+S  RDV++ HQ+ PP      F RP  PGS+PF IP P   +GN M F+   P LY   LPPES R VP +    PP + FP +DP+LP+LLV+QI+YYFSD NL+KD+FL+S MD++GWV I++IA+F RV  LT N+QLIL +L  ST VEVQGDK+RRR+ W+KWI  S Q    DS   SP      +L TS Q +TLDE+  +    +   D H+E  PG+ S E  + Q+K+ NG  T  E 
Sbjct:  113 WNKPLNGEVEAGPVMGGAVTWPALSESTR------PSPKPSSDSSKPISDGSVSISQGPVISHSPQKQVNTNANPNFTPN--HTLPVRQRSMKRGGG---GSAQSNFTRPPPPPPLPPPFPLFEVPYGTLVPAVPDLSPREPLYRSNNWETRPIGGFVPKSHAGNDHPSQRNSSRRSNFGPRPRGDGSYHNNYGSRRNQDRDWSAARSSNVRDVNVQHQIHPPR----SFGRPPPPGSSPFTIPQPVRSFGNSMSFDMTSPFLYVSTLPPESFRSVPFVGPAPPPTMFFPVLDPSLPTLLVHQIEYYFSDANLIKDDFLKSNMDDEGWVPITLIASFPRVQHLTYNIQLILHSLRASTAVEVQGDKVRRRNEWRKWIPASGQFPTDDSGSHSPNGSGYSMLATSFQKVTLDEATINHNSAMGKADPHIEAAPGRCSSEELTGQSKLANGEGTNEEA 553
[Close]
BLAST of XM_017359327.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ACP2 (HTH La-type RNA-binding domain-containing protein {ECO:0000259|PROSITE:PS50961})

HSP 1 Score: 317.005 bits (811), Expect = 7.206e-100
Identity = 216/475 (45.47%), Postives = 274/475 (57.68%), Query Frame = 0
 
Query:   31 WMKPVNGVVE--PVMG-RDSWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQKADTNGSPNSSNHNAHPH-------PVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTP-------------------PPFPIPFGLLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHMHQMAPPPPPPPRFMRPGLPGSTPFIPLPHV--YGNPMPFEFVRPILYGPPLPPESLRGVPLIPSQVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQVDPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLEVFPGKISGEATSSQTKVGNGVDTAGEV 474
            W KP+NGV++  PVMG   SWP ++ESTR      SS    D + + +   S+   + +   + +    ++  P   N NA+ +       P RQR  KRGGG   GS QS F+R  PP P P                   P F +P+  L     +  REPP+K N WESRP+GG  S+S+ GNDH SQR+ SRRGN+G RPRGDG H+N +G RRD DR+W+  R+S  RDV  HQ     P P   +R   PGST FI    V  +GNPM F+   P +Y   LP ES RGVP +P   PPP+ FP  DP+LP LL+NQIDYYFSDDNLVKD FL+S MD+QGWV I++IA F RV  LT N+QLILD+L  STVVEVQGDK+RRR+ W+KWI  S +   DS   SP      +L TS Q +TLDE   +    +   D   E  PG+ S E  + Q+K+ NG  T  E 
Sbjct:  104 WNKPLNGVIDVSPVMGGAGSWPALSESTRPKPSPDSSKPILDGSVSISQVQSLKTYRQTHGGHTNVPVISHSPPKQVNTNANRNFTPNPTLPARQRSMKRGGG---GSAQSNFTRLPPPPPPPPPPPPPPPPPLPLPLPQPFPSFELPYSTL-----VSPREPPYKSNYWESRPIGGFFSKSHAGNDHPSQRNSSRRGNFGPRPRGDGSHHNSYGSRRDHDRDWSASRSSNVRDV-PHQT----PSPRSSIRHPPPGSTSFITAQPVGPFGNPMSFDMRPPFIY---LPSESFRGVPFVPPMSPPPMFFPVSDPSLPGLLLNQIDYYFSDDNLVKDNFLKSNMDDQGWVPITLIAGFPRVQHLTCNIQLILDSLRASTVVEVQGDKVRRRNEWRKWIPTSGRFPTDSGSHSPSVSGYNILATSFQKVTLDEVSINCSSAMGKADPVTEAAPGRHSSEELAGQSKLANGEGTDEEA 562
[Close]
BLAST of XM_017359327.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103YES4 ((RNA-binding protein Lupus La {ECO:0000313|EMBL:KVI07751.1}))

HSP 1 Score: 312.768 bits (800), Expect = 2.817e-98
Identity = 214/459 (46.62%), Postives = 280/459 (61.00%), Query Frame = 0
 
Query:    4 SSESIAPCLSVSEDNAAATKSSASSSPWMKPV-NGVVE----PVMGRDSWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQKADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTPPPFPIPFG-LLPPMMDLQVREP-PFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHY--NGHGGRRDQ-DRNWNPPRNSTARDVHMHQMAPPPPPPPR-FMRPGLPGSTPFI-PLPHV-YGNPMPFEFVRPILYGPPLPPESLRGVPLIPSQVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQVDPDSALSSPIQLIDK-VLETSIQNITLDESDSSKLRTVETGDAHLEV 448
            ++ ++   +  SE +     S    S W KP  NGVV+    PVMG  SWP ++E TR   L KS S P ++++   S  SV+VS+  +     QK     + + SN N H H +RQR  KRGGGA GG+       P PP P  P F +P+G  +P ++D  VRE  P+ GN +  RP+GGVG  SN  +DHSS R   +R N+G RPR DG  Y  NGHGGRRD  DR+W  PR+  A     HQM PPPPPPPR +M+    G  PFI P P   YG PM +E   P LY P LPPE  RG PL+P   PP +  P +DP+L  L++ QI+YYFSD NLVKD +LRS MDE+GWV +++IA FRRV SLTS++Q+IL++L  STVVEVQG+ +RRR+ W KW+  S +   DS+  SP    D  V+ET +Q +TLDES +++  T +T DAH E 
Sbjct:   74 TAAAVETHMEGSEGSNNGNASGVKKSAWNKPSPNGVVDGTNTPVMGAASWPALSELTR--PLPKSLSFPSESSSKPTSDGSVTVSQAPIILQPQQKPVKTNASHHSNQN-HTHNLRQRSMKRGGGA-GGAYNRPPPPPPPPMPPFPLFDMPYGSFVPAVLDSPVREQSPYNGNNFAPRPMGGVGPHSNAIHDHSSNR---KRNNFGPRPREDGGLYLNNGHGGRRDHHDRDWRGPRSHGAIP---HQMGPPPPPPPRGYMQQAHLGPAPFIAPQPMRPYGTPMGYEMAAPFLYVPTLPPEPYRGAPLLPRAAPPSMFIPVMDPSLSVLILTQIEYYFSDANLVKDNYLRSNMDEEGWVPVTLIAGFRRVQSLTSDIQMILNSLRDSTVVEVQGETVRRRNEWTKWVKTSNKFPADSSFHSPRAATDGLVVETPLQKLTLDESITAEKMTTDTNDAHNEA 522
[Close]
BLAST of XM_017359327.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B497 (HTH La-type RNA-binding domain-containing protein {ECO:0000259|PROSITE:PS50961})

HSP 1 Score: 318.931 bits (816), Expect = 1.501e-95
Identity = 213/446 (47.76%), Postives = 274/446 (61.43%), Query Frame = 0
 
Query:   15 SEDNAAATKSSASSSPWMKPVNGVVE--PVMGRD-SWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQK-ADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTPPPFP-----IPFGLLPPMM-DLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHM-HQMAPPPPPPPRFMRPGLPGSTPFI-PLP-HVYGNPMPFEFVRPILYGPPLPPESLRGVPLIPSQVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQVDPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLE 447
            +E N   +K  A    W KP+NGVVE  PVMG   SWP ++ESTR       S  P   ++   S  S+ +S+  V S + QK   TN +PN + +  H  PVRQR  KRGGG+  GS QS FSRP PP P P P        P+  L P++ D   R+PP+KGN W++RP+GG  SQS+ GND   QR  SRR N+G RPRGDG ++N + GR +QDR+ N PR+S  RDV + HQMAPP      F+R   PGS PFI P P   +GN M F+     +Y   LP ES  GVP       P + FP  DP+LP+LLVNQIDYYFSDDNLVKD +L+S M+++GWV I++IA+F RV  LT+N+QLILD+L  STVVEVQGDK+RRR+ W+KW+  S Q   DS   SP      +L TS Q +TLDE  +++       D++ E
Sbjct:   18 NESNVGGSKRPA----WNKPLNGVVEVGPVMGGAVSWPALSESTR------PSPKPSSDSSKPISDGSIPISQEPVISQSPQKQVSTNANPNFTPN--HTLPVRQRSMKRGGGSGVGSKQSNFSRPPPPPPPPLPPQFPLFDAPYSTLVPVLPDFSPRDPPYKGNNWDTRPIGGFVSQSHAGNDQPLQR--SRRSNFGPRPRGDGPYHNSNVGRHNQDRDRNGPRSSNIRDVQVQHQMAPPRS----FIRHPPPGSIPFITPQPVRPFGNQMSFDMASRYVYVSTLPQESFSGVPFFDPATLPGMFFPPPDPHLPTLLVNQIDYYFSDDNLVKDNYLKSNMNDEGWVPITLIASFPRVQHLTNNIQLILDSLRASTVVEVQGDKVRRRNEWRKWVLTSGQFPTDSGSVSPGGSGYNMLATSFQKVTLDEVTTNRSSGTAKADSYTE 445
[Close]
BLAST of XM_017359327.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M5Y7L2 (HTH La-type RNA-binding domain-containing protein {ECO:0000259|PROSITE:PS50961})

HSP 1 Score: 298.901 bits (764), Expect = 3.731e-93
Identity = 213/458 (46.51%), Postives = 270/458 (58.95%), Query Frame = 0
 
Query:    3 ASSESIAPCLSVSEDNAAATKSSASSSPWMKPVNGVVE----PVMGRDSWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKS---NAHQKADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGS--VQSGFSRPIPPSPTPPPFPIP-----FG-LLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHMHQMAPPPPPPPRFMRPGLPGSTPFIPLPHV-YGNPMPF--EFVRPILYGPPLPPESLRGVPLIPSQVPPPVVF-PFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQVDPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVET 441
            A S S A   + +  NAA  K  A    W KP N  VE     VMG  SWP ++ESTR    + + S     + A  +  SVSVS+  V +   N+ + +  N SPNS+++NA P   RQRPSKRGGG++ G     SGF  P  P P PP    P     +G L+P M D   R+P F+GN+W+ RPVGG  +QS+  NDH   R+ SRRGN+G  PRGDG ++N HGG+RDQDR         ARD HMHQ   PP      +RP  P +  F P P   + NPM F  EFV    Y P LP E +RG+P I SQ P P +F P  +  LPSL+VNQIDYYFSD NL+KD+FLRS MD QGWV IS+IANF RV SLT+N+QLILD+L  S++VEV  DK+RR + W KWI    Q+  +S  SSP  L    L TS + +T++E   S+  T E+
Sbjct:   82 ADSSSAAEGSNGNNGNAARPKKPA----WNKPANDDVEVSPTTVMGAVSWPALSESTRASPKLPADSSSKTVSDATVTHGSVSVSQAPVITHSPNSKRHSTNNASPNSTSNNAFP--ARQRPSKRGGGSSTGGGHAHSGFGHPPTPPPPPPFPVFPILPNGYGNLVPTMPDPSSRDPSFRGNSWDVRPVGGFVTQSHQVNDH---RNNSRRGNFGPHPRGDGPYHNNHGGKRDQDRG----NYMNARDAHMHQHRAPPR---GLVRPAPPNTAAFAPQPARPFANPMGFPGEFV----YIPTLPLEPMRGMPFI-SQAPHPTMFIPVAESPLPSLIVNQIDYYFSDANLIKDDFLRSNMDVQGWVPISLIANFPRVKSLTTNIQLILDSLRASSIVEVHDDKVRRLNEWMKWIPAGSQLPFESGSSSPGVLSHNTLATSFEKMTVEEEAPSQTNTTES 518
[Close]
BLAST of XM_017359327.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4FGQ7 ((Full=PREDICTED: la-related {ECO:0000313|EMBL:VVA25801.1}))

HSP 1 Score: 298.13 bits (762), Expect = 1.098e-92
Identity = 215/474 (45.36%), Postives = 276/474 (58.23%), Query Frame = 0
 
Query:    3 ASSESIAPCLSVSEDNAAATKSSASSSPWMKPVNGVVE----PVMGRDSWPTITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKS---NAHQKADTNGSPNSSNHNAHPHPVRQRPSKRGGGAAGGS--VQSGFSRPIPPSPTPPPFPIP-----FG-LLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGNYGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHMHQMAPPPPPPPRFMRPGLPGSTPFIPLPHV-YGNPMPF--EFVRPILYGPPLPPESLRGVPLIPSQVPPPVVF-PFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNISVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSRQVDPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLEVFPGKISGEA 457
            A S S A   + +  NAA  K  A    W KP N  VE     VMG  SWP ++ESTR    + + S     + A  +  SVSVS+  V +   N+ + +  N SPNS+++NA P   RQRPSKRGGG++ G     SGF  P  P P PP    P     +G L+P M D   R+P F+GN+W+ RPVGG  +QS+  NDH   R+ SRRGN+G  PRGDG ++N HGG+RDQDR         ARD HMHQ   PP      +RP  P +  F P P   + NPM F  EFV    Y P LP E +RG+P I SQ P P +F P  +  LPSL+VNQIDYYFSD NL+KD+FLRS MD QGWV IS+IANF RV SLT+N+QLILD+L  S++VEV  DK+RR + W KWI    Q+  +S  SSP  L    L TS + +T++E   S+  T+   +++    P   S E+
Sbjct:   84 ADSSSAAEGSNGNNGNAARPKKPA----WNKPANDDVEVSPTTVMGAVSWPALSESTRASPKLPADSSSKTVSDATVTHGSVSVSQAPVITHSPNSKRHSTNNASPNSTSNNAFP--ARQRPSKRGGGSSIGGGHAHSGFGHPPTPPPPPPFPVFPILPNGYGNLVPTMPDPSSRDPSFRGNSWDVRPVGGFVTQSHQVNDH---RNNSRRGNFGPHPRGDGPYHNNHGGKRDQDRG----NYMNARDAHMHQHRAPPR---GLVRPAPPNTAAFAPQPARPFANPMGFPGEFV----YIPTLPLEPMRGMPFI-SQAPHPTMFIPVAESPLPSLIVNQIDYYFSDANLIKDDFLRSNMDVQGWVPISLIANFPRVKSLTTNIQLILDSLRASSIVEVHDDKVRRLNEWMKWIPAGSQLPFESGSSSPGVLSHNTLATSFEKMTVEEEAPSQTNTMGKLESNSVSIPESCSTES 536
Match NameStatsDescription
A0A5B6YW52E-Value: 7.957e-112, PID: 48.58(Putative la-related protein 1C-like {ECO:0000313|... [more]
A0A5B6YVQ8E-Value: 2.182e-111, PID: 45.98(Putative la-related protein 1C-like {ECO:0000313|... [more]
A0A5B6YWY6E-Value: 2.534e-110, PID: 49.34(Putative la-related protein 1C-like {ECO:0000313|... [more]
A0A5B6YW18E-Value: 1.195e-109, PID: 49.12(Putative la-related protein 1C-like {ECO:0000313|... [more]
A0A5B6YW41E-Value: 1.492e-109, PID: 48.90(Putative la-related protein 1C-like {ECO:0000313|... [more]
A0A5J5ACP2E-Value: 7.206e-100, PID: 45.47HTH La-type RNA-binding domain-containing protein ... [more]
A0A103YES4E-Value: 2.817e-98, PID: 46.62(RNA-binding protein Lupus La {ECO:0000313|EMBL:KV... [more]
A0A5J5B497E-Value: 1.501e-95, PID: 47.76HTH La-type RNA-binding domain-containing protein ... [more]
M5Y7L2E-Value: 3.731e-93, PID: 46.51HTH La-type RNA-binding domain-containing protein ... [more]
A0A5E4FGQ7E-Value: 1.098e-92, PID: 45.36(Full=PREDICTED: la-related {ECO:0000313|EMBL:VVA2... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.