XM_017402616.1

Resource Type: 
Polypeptide
Name: 
XM_017402616.1
Identifier: 
XM_017402616.1-protein
Sequence: 
MMIFSPKSQTLSLLSSSNSAFTSPCSLRRQFVGSGHIFRPPGNLCYRKKW
KKKKRIGFDIDASRGRLVVVKASISSQSIVVLIAVVAVSAITAAYLNYRQ
RKPKQHELPGPVDDQNTVHDKEDNAELASSSHSRTAILSSLPVLQAQSNA
HPVDLDLEEEEIVVKQNAQESKSSSDLALSETVSQLDAALVLPNHTEIKV
DQVDKLRHEIESSAATVSLNCVVSGVVELDKPNDETIDEARVDKYAGNGD
SVRRELHTFYEANQSHVPPGENSDSVKPVHSHASSSETYSIYPLNRSYIN
GAKFSTLDILPTSGNHEGRPHLGFSAEVSFRKSKGSGKRHEFFSQNEREM
IDQNGHRSSLISSYIKEKHINERRSRSERSTAYRRLLKEGRLVDCLELLE
DMEKQNLLDMDKIYHAGFFRNCKTQRAVKEAFRFTKLIPNPTLSTFNMLL
SVCASSQHLEAFQVMQLVQEAELKADCKLYTTLISTCAKCGKVDSMFKVF
HEMVNAGVEPNVHTYGALIDGCAKVGMVAKAFGAYGIMRSKNVKPDRVVF
NALISACGQSGAVDRAFDVLAEMRAETIPVDPDHVTVGALIKACANAGQV
VRAQEVYNMISKYNIRGTPELYTIAINSSSLTGDWEFACNVYNDMREKGV
IPDEMFISAFIDVAGHSNKLESAFEILQKAKSDGMNVGIISYSSLMGACS
NAKNWQMALELHEEIKDMNIKPTISTMNALITALCDGDQLQKALEVLSDM
KKVGLCPNTITYSILLVACEKNDDLEVGLMLLSQAKKDGIAPNLVMCRCL
IALCLRRFEKSCTLGEDVLSLNSGRPQIDSKWTSIVLRVYREAIIAGVVP
TTEEFSQVLGCLRLPHDSSLRARLIENLGVIDSTSNNSNLCSLLDGFGEY
DPRAFSLLEEAASLGILPSVSFKDIPIVVDVRNLQIHSAEVFLLTVLKSL
KHRLAAGVKLPNIIILLPIDKIQVQSSKGDKMINLAGRTSRAVAALLRRL
AIPYIGNESFGKIRMNGVVVKKWLQPKLTSPFRGKLSNLNSSQSHLGRNI
SLQQRNIRIGNLSLE
Sequence Length: 
1065
Sequence Checksum: 
279b876e68b80ac3059e53850f1af9e0
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017402616.1, derives from mRNA, XM_017402616.1.
Loading content
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017402616.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017402616.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5B8T5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF1002126.1}))

HSP 1 Score: 1761.12 bits (4560), Expect = 0.000e+0
Identity = 899/1119 (80.34%), Postives = 962/1119 (85.97%), Query Frame = 0
 
Query:    2 MIFSPKSQTLSLLSSSNSA--FTSPCSLRRQFVGSGHIFRPPGNLCYRKKWKKKKRIGFDIDASRGRLVVVKASISSQSIVVLIAVVAVSAITAAYLNYRQR-KPKQHELPGPVDDQ----------------NTVHDKEDN----------------------------------AELASSSHSRTAILSSLPVLQAQSNAHPVDLDLEEEEIVVKQNAQESKSSSDLALSETVSQLDAALVLPNHTEIKVDQVDKLRHEIESSAATVSLNCVVSGVVELDKPNDETIDEARVDKYAGNGD-SVRRELHTFYEANQSHVPPGENSDSVKPVHSHASSSETYSIYPLNRSYINGAKFSTLDILPTSGNHEGRPHLGFSAEVSFRKSKGSGKRHEFFSQNEREMIDQNGHRSSLISSYIKEKHINERRSRSERSTAYRRLLKEGRLVDCLELLEDMEKQNLLDMDKIYHAGFFRNCKTQRAVKEAFRFTKLIPNPTLSTFNMLLSVCASSQHLE-AFQVMQLVQEAELKADCKLYTTLISTCAKCGKVDSMFKVFHEMVNAGVEPNVHTYGALIDGCAKVGMVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMRAETIPVDPDHVTVGALIKACANAGQVVRAQEVYNMISKYNIRGTPELYTIAINSSSLTGDWEFACNVYNDMREKGVIPDEMFISAFIDVAGHSNKLESAFEILQKAKSDGMNVGIISYSSLMGACSNAKNWQMALELHEEIKDMNIKPTISTMNALITALCDGDQLQKALEVLSDMKKVGLCPNTITYSILLVACEKNDDLEVGLMLLSQAKKDGIAPNLVMCRCLIALCLRRFEKSCTLGEDVLSLNSGRPQIDSKWTSIVLRVYREAIIAGVVPTTEEFSQVLGCLRLPHDSSLRARLIENLGVIDSTSNNSNLCSLLDGFGEYDPRAFSLLEEAASLGILPSVSFKDIPIVVDVRNLQIHSAEVFLLTVLKSLKHRLAAGVKLPNIIILLPIDKIQVQSSKGDKMINLAGRTSRAVAALLRRLAIPYIGNESFGKIRMNGVVVKKWLQPKLTSPFRGKLSNLNSSQSHLGRNISLQQRNIRIGNLSLE 1065
            MIFS KSQ+LSLLSSS S   FTSPCSLRRQF+GSGH  RPPGNL YRKKWKK   +GF I + +   +VV+ASISSQSIV+ I+VV VSAI AAYLNY QR K K  E+PG VD Q                   H+ E N                                   EL   SHS TA+LSSLP LQA+S A+P+  D EE+E   K N Q ++S S+LA+ ++V++L+ A+VLPNHTEIKV++VD   HEIESSA TV+LN + +GVVELD+PNDE I+E  VDKYAGN D SVRREL+T Y ANQS VP  ENS +VKPV SHASSS+T ++YP  R  INGAK ST D+L TSG HEG+PHLGFSAEVSFR+SKGSG RHE      +EM++QNGHRSS  SSYIKEKHINERRSRS+RSTAYR LLKEGRLV+C+ELLEDMEKQNLLDMDKIYHAGFFRNC+TQRAVKEAFRFTKLIPNPTLSTFNMLLSVCASSQ LE AF+VMQLVQEAELKADCKLYTTLISTCAKCGKVDSMFKVFHEMVNAGVEPNVHTYGALIDGCAKVGMVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMRAETIPVDPDHVTVGALI+ACANAGQ  RAQEVYNMI+KYNIRGT ELYTIA+NSSSLTGDWEFACNVYNDM+EKGVIPDEMFISA IDVAGHSNKLESAFEIL+KAKSDGM+VGIISYSSLMGACSNAKNWQMALELHEEIKDMNIKPTISTMNALITALCDGDQLQKA+EVLSD+KKVGL PNTITYSILLVACEKNDDLEVGL LLSQAK DGIAPNLVMCRCLIALCLRRFEKSCTLGEDVLSLNSGRPQI+SKWTSIVLRVYREAIIAGVVPTTEEFSQVLGCLRLPHDSSLR RLIENLGVID+ SNNSNLCSLLDGFGEYDPRAFSLLEEAASLGILPS+S KD PIVVDVRNLQIHSAEVFLLTVLKSLKHRLAAGVKLPNIIILLP+DK QVQSSKGD MINLAGRTSRAVAALLRRLAI YIGNESFGKIR+NGVVVKKWLQPKLTSPF GK SN+NSSQS LGRNISLQQRNIRIGNLSLE
Sbjct:    1 MIFSAKSQSLSLLSSSTSLSPFTSPCSLRRQFLGSGHFSRPPGNLRYRKKWKK---LGFHIHSPK---LVVRASISSQSIVLFISVVTVSAIAAAYLNYCQRNKTKSKEIPGSVDHQVNKFVDENRDKVIELNRISHEIEGNIALPQVTENSLMHEKALVADSSPSPSFSVATSKIVELVLPSHSETAVLSSLPSLQAESCAYPIHFDFEEKETHSKGNDQTTESGSELAILKSVTELNGAVVLPNHTEIKVEEVDMPSHEIESSATTVALNWIGTGVVELDEPNDEIIEEMHVDKYAGNDDDSVRRELYTLYLANQSDVPTVENSGTVKPV-SHASSSKTKTVYPPTRDSINGAKISTPDVLHTSGIHEGKPHLGFSAEVSFRESKGSGIRHE------KEMLNQNGHRSSFTSSYIKEKHINERRSRSQRSTAYRHLLKEGRLVECIELLEDMEKQNLLDMDKIYHAGFFRNCRTQRAVKEAFRFTKLIPNPTLSTFNMLLSVCASSQDLEGAFEVMQLVQEAELKADCKLYTTLISTCAKCGKVDSMFKVFHEMVNAGVEPNVHTYGALIDGCAKVGMVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMRAETIPVDPDHVTVGALIQACANAGQADRAQEVYNMINKYNIRGTLELYTIAVNSSSLTGDWEFACNVYNDMKEKGVIPDEMFISAIIDVAGHSNKLESAFEILRKAKSDGMHVGIISYSSLMGACSNAKNWQMALELHEEIKDMNIKPTISTMNALITALCDGDQLQKAVEVLSDVKKVGLYPNTITYSILLVACEKNDDLEVGLTLLSQAKNDGIAPNLVMCRCLIALCLRRFEKSCTLGEDVLSLNSGRPQINSKWTSIVLRVYREAIIAGVVPTTEEFSQVLGCLRLPHDSSLRDRLIENLGVIDNASNNSNLCSLLDGFGEYDPRAFSLLEEAASLGILPSISLKDSPIVVDVRNLQIHSAEVFLLTVLKSLKHRLAAGVKLPNIIILLPVDKTQVQSSKGDTMINLAGRTSRAVAALLRRLAISYIGNESFGKIRINGVVVKKWLQPKLTSPFSGKPSNMNSSQSRLGRNISLQQRNIRIGNLSLE 1106    
BLAST of XM_017402616.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AR55 (PPR_long domain-containing protein {ECO:0000259|Pfam:PF17177})

HSP 1 Score: 1246.11 bits (3223), Expect = 0.000e+0
Identity = 670/1126 (59.50%), Postives = 802/1126 (71.23%), Query Frame = 0
 
Query:    4 FSPKSQTLSLLSSSNSAFTSPC--------SLRRQFVGSGHIFRPPGNLCYRKKWKKKKRIGFDIDASRGRLVVVKASISSQSIVVLIAVVAVSAITAAYLNYRQRKPKQHELPGP----------------VDDQNTVHDKEDNAELASSSHSRTAILSSLPVLQAQSNAHPVDLDLE-----EEEIVVKQNAQESKSSS------------------DLALSETVSQLDAALVLPN-HTEIKVDQVDKLRHEIE-------------SSAATVSLNCVVSGVVELDKPNDETIDEARVDKYAGN-GDSVRRELHTFYEANQSHVPPGENSDSVKPVHSHASSSETYSIYPLNRS-YINGAKFSTLDILPTSGNHEGRPHLGFSAEVSFRKSKGSGKRHEFFSQNEREMIDQNGHRSSLISSYIKEKHINERRSRSERSTAYRRLLKEGRLVDCLELLEDMEKQNLLDMDKIYHAGFFRNCKTQRAVKEAFRFTKLIPNPTLSTFNMLLSVCASSQHLE-AFQVMQLVQEAELKADCKLYTTLISTCAKCGKVDSMFKVFHEMVNAGVEPNVHTYGALIDGCAKVGMVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMRAETIPVDPDHVTVGALIKACANAGQVVRAQEVYNMISKYNIRGTPELYTIAINSSSLTGDWEFACNVYNDMREKGVIPDEMFISAFIDVAGHSNKLESAFEILQKAKSDGMNVGIISYSSLMGACSNAKNWQMALELHEEIKDMNIKPTISTMNALITALCDGDQLQKALEVLSDMKKVGLCPNTITYSILLVACEKNDDLEVGLMLLSQAKKDGIAPNLVMCRCLIALCLRRFEKSCTLGEDVLSLNSGRPQIDSKWTSIVLRVYREAIIAGVVPTTEEFSQVLGCLRLPHDSSLRARLIENLGVIDSTSNNSNLCSLLDGFGEYDPRAFSLLEEAASLGILPSVSFKDIPIVVDVRNLQIHSAEVFLLTVLKSLKHRLAAGVKLPNIIILLPIDKIQVQSSKGDKMINLAGRTSRAVAALLRRLAIPYIGNESFGKIRMNGVVVKKWLQPKLTSPFRGKLSNLNSSQSHLGRNISLQQRNIRIGNLSLE 1065
            FS K QTLS++S +  + +S          SLRR+F+G GH  RPPG  C R      K++GF I + R    + +AS+ SQSI V++AVV VSA+T  YLNY +RK    E+ GP                + DQ  +   ED     S S S+ ++     +  A  N     L  E     EE ++   NA ES  S                    L+LS  V     AL   N  TE+   + +  R E +              + A V  + + + V E +K N E  +E+    Y+    +S+R EL+TFYEANQS     EN   +  + SHAS  ++ S Y L RS    GAK    D L T+ N EG+  LG   E S RK    GK   F   NE+ ++ QN HR+   +      H+N+R   S++ + Y R +++GRL DC+ELLEDME++ LLDMDK+YHA FFR CK+Q+AVKEAFRFTK IPNPTLSTFNML+SVCASSQ  E AFQV QLVQEA LK DCKLYTTLISTCAK GKVD+MFKVFHEMVNA VEPNVHTYGALIDGCAK G VAKAFGAYGIMRSKNVKPDRV+FNALI+ACGQSGAVDRAFDVLAEMRAET P+DPDHVTVGALIKACANAGQV RAQEVYNMI ++NI+GTPE+YTIA+NS S  GDWEFAC+VY+DM  KGV+PDEMF+SA IDVAGH+ K+++AFEIL+KA++ G+++GI+SYSSLMGACSN K+W+ ALEL+E+IK + +KPT+ TMNALIT LCDG+QLQ+A+EVLS+MK+VGLCPNTITYSILLVA EK DDLEVGLMLLSQAKKDG+APNLVMCRC IA+C+RRFE++CTLGE VLS N G PQIDSKWTS+ L VYRE I AGVVPT EEFSQVLGCL+LPHDSSLR RLIENLGV   TS +SNLCSL+DGFGEYDPRAFSLLEEAASLGI+P VSFK+ PI VD R LQIH+AEV+LLTVLK LKHRLAAG KLPNI ILLPI+K Q+QS  G+K INLAGR S+A+AALLRRL +PY GNES+GKIR+NG+ VK+W +PKL SPF GK + L    S LG+ I+ QQRNIR GNLSL+
Sbjct:    5 FSAKPQTLSVISCTPLSSSSSYLVSPSGLQSLRREFIGCGHNLRPPGLRCRRTC----KKLGFHIQSPR---FLFRASLDSQSIPVVVAVVTVSALTVIYLNYSKRK-NVEEMSGPLVLALSGQIRGIMNQVIMDQ--IFGIEDLERRTSRSGSKDSMKEMGEISHASENKVGQLLTKEPALMHEEPLIT--NALESHGSDIIASSVGDSISSRKSEVMGLSLSHCVLYESGALQPVNCATEMPELEFEGCRQETDFGSDLHKLMVKEIPTVAPVPADNIGAVVDEHEKSNPELGEESETISYSSMFRESIREELYTFYEANQSV----ENLSGLNTLSSHASVRDSNSFYSLTRSSTTKGAKLLAQDFLHTAENFEGKIPLGLYREGSSRKRIEFGKSRGFPRDNEKRIMPQNDHRNLPQTPLPNGMHVNDRHYSSQQFSVYNRFIRDGRLTDCVELLEDMERKGLLDMDKVYHARFFRVCKSQKAVKEAFRFTKFIPNPTLSTFNMLMSVCASSQDSEGAFQVPQLVQEAGLKVDCKLYTTLISTCAKSGKVDAMFKVFHEMVNAEVEPNVHTYGALIDGCAKDGQVAKAFGAYGIMRSKNVKPDRVIFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHVTVGALIKACANAGQVDRAQEVYNMIHEFNIKGTPEVYTIAVNSCSQIGDWEFACSVYSDMTRKGVVPDEMFLSALIDVAGHAGKVDAAFEILEKARNQGIHIGIVSYSSLMGACSNVKDWRKALELYEDIKSIKLKPTVPTMNALITVLCDGEQLQQAVEVLSEMKRVGLCPNTITYSILLVASEKKDDLEVGLMLLSQAKKDGVAPNLVMCRCFIAMCIRRFERACTLGEPVLSFNPGWPQIDSKWTSLALMVYRETIAAGVVPTEEEFSQVLGCLQLPHDSSLRNRLIENLGVSTDTSRSSNLCSLVDGFGEYDPRAFSLLEEAASLGIVPCVSFKESPIFVDARKLQIHTAEVYLLTVLKGLKHRLAAGAKLPNITILLPIEKTQIQSPNGEKTINLAGRISQAIAALLRRLRLPYQGNESYGKIRINGIAVKRWFRPKLASPFSGKQTEL----SWLGKGITHQQRNIRTGNLSLD 1110    
BLAST of XM_017402616.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ARJ4 (PPR_long domain-containing protein {ECO:0000259|Pfam:PF17177} (Fragment))

HSP 1 Score: 1232.62 bits (3188), Expect = 0.000e+0
Identity = 653/1120 (58.30%), Postives = 798/1120 (71.25%), Query Frame = 0
 
Query:   13 LLSSSNSAFTSPC--------SLRRQFVGSGHIFRPPGNLCYRKKWKKKKRIGFDIDASRGRLVVVKASISSQSIVVLIAVVAVSAITAAYLNYRQRKPKQHELPG-------------------------PVDDQNTVHDKEDN-AELASSSHS-----------RTAILSSLPVLQAQSNAHPVDLDLE--EEEIVVKQNAQESKSSSDLALSET--VSQLDAALVLP--------NHTEIKVDQVDKLRHEIESSAATVSLNCVVSGVVELDKPNDETIDEARVDKYAG-NGDSVRRELHTFYEANQSHVPPGENSDSVKPVHSHASSSETYSIYPLNR-SYINGAKFSTLDILPT-------SGNHEGRPHLGFSAEVSFRKSKGSGKRHEFFSQNEREMIDQNGHRSSLISSYIKEKHINERRSRSERSTAYRRLLKEGRLVDCLELLEDMEKQNLLDMDKIYHAGFFRNCKTQRAVKEAFRFTKLIPNPTLSTFNMLLSVCASSQHLE-AFQVMQLVQEAELKADCKLYTTLISTCAKCGKVDSMFKVFHEMVNAGVEPNVHTYGALIDGCAKVGMVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMRAETIPVDPDHVTVGALIKACANAGQVVRAQEVYNMISKYNIRGTPELYTIAINSSSLTGDWEFACNVYNDMREKGVIPDEMFISAFIDVAGHSNKLESAFEILQKAKSDGMNVGIISYSSLMGACSNAKNWQMALELHEEIKDMNIKPTISTMNALITALCDGDQLQKALEVLSDMKKVGLCPNTITYSILLVACEKNDDLEVGLMLLSQAKKDGIAPNLVMCRCLIALCLRRFEKSCTLGEDVLSLNSGRPQIDSKWTSIVLRVYREAIIAGVVPTTEEFSQVLGCLRLPHDSSLRARLIENLGVIDSTSNNSNLCSLLDGFGEYDPRAFSLLEEAASLGILPSVSFKDIPIVVDVRNLQIHSAEVFLLTVLKSLKHRLAAGVKLPNIIILLPIDKIQVQSSKGDKMINLAGRTSRAVAALLRRLAIPYIGNESFGKIRMNGVVVKKWLQPKLTSPFRGKLSNLNSSQSHLGRNISLQQRNIRIGNLSLE 1065
            L+S +  +FTS C        SLRR+F+G GH  RP G     +  +K K++GF I + R    +++AS+ SQSI+V++AV+ VSA+T  YLNY +RK    E+ G                          ++ + +V   +D+  ++   SH+            TA++    ++     +H  D+      + I  +++     S S   LSE+  +  ++ A  +P          TE   D + KL  + + + A+V ++     V E  K N +  DE+    Y+G   +SVR EL+TFYEA QS +    N + +  + SH S+ +T S   L R S I GAK    + L T       S N EG+  L    E S  K K   K   F    E+ ++ QNGH +   S      H ++R   S + + Y R L++GRL+DC+ELLEDM+++ LLDMDK+YHAGFFR CK+Q+AVKEAFRFTKLIPNPTLSTFNML+SVCAS Q  E AFQ++QLVQEA LKADCKLYTTLISTCAK GKVD+MFKVFHEMVNA VEPNVHTY ALIDGCAK G VAKAFGAYGIMRSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AET P+DPDHVTVGALIKACANAGQV RAQEVYNMI ++NI+GTPE+YTIA+NS S  GDWEFAC+VY+DM  KGV+PDEMF+SA IDVAGH+ K+++AFEILQ+A++ G+++G I YSSLMG CSNAKN Q ALEL+E+IK + +KPT+ TMNALIT LCDG+QLQ+A+EVLS+MK+VGLCPNTITYSILLVA EK DDLEVGLMLLSQAKKDG+APNLVMCRC IA+C+RRFE++CTLGE VLS N G PQIDSKWTS+ L VYRE I AGVVPT EEFSQVLGCL+LPHDSSLR RLIENLGV   TS +SNLCSL+DGFGEYDPRAFSLLEEAASLGI+P VSFK+ PI VD R LQIH+AEV+LLTVLK LKHRLAAG KLPNI ILLPI+K Q+QS  G+K INLAGR S+A+AALLRRL +PY GNES+GKIR+NG+ VK+W QPKL SPF GK + L    S LG+ I+ QQRNIR GNLSL+
Sbjct:    1 LISCTPLSFTSSCLLSPSRVRSLRREFLGCGHNLRPTG----LRSPRKCKKLGFHIQSPR---FLLRASLDSQSILVVVAVITVSALTVVYLNYSKRKKNVREMSGLSILALPERIIGIMNRVMYHIFGAEDLEREMSVSGSKDSMKQMGEISHASEDKAVQLVMKETALMHEETLITNTLESHGSDIIASGVSDPISSRESEVAGLSFSPHWLSESGALQPVNLATEMPELEFEGCGQETEFGSD-LQKLMVKEKLTIASVPMDSARPEVNEHKKENPDLGDESDTISYSGIFRESVREELYTFYEAKQSAMKSIANLNGLNSLASHGSNQDTNSFSSLIRSSTIKGAKLLAPEFLHTADRMLVPSENFEGKKSLRLFKEGSPHKRKDLRKSRGFPRDKEKGILPQNGHINLPQSPLPDGMHGDDRHYPSLKYSIYNRFLRDGRLIDCIELLEDMQRKGLLDMDKVYHAGFFRVCKSQKAVKEAFRFTKLIPNPTLSTFNMLMSVCASCQDSEGAFQILQLVQEAGLKADCKLYTTLISTCAKSGKVDAMFKVFHEMVNAQVEPNVHTYSALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMSAETQPIDPDHVTVGALIKACANAGQVDRAQEVYNMIHEFNIKGTPEVYTIAVNSCSQIGDWEFACSVYSDMTRKGVVPDEMFLSALIDVAGHAGKVDAAFEILQEARNQGIHIGTILYSSLMGVCSNAKNLQKALELYEDIKSIKLKPTVPTMNALITVLCDGEQLQQAVEVLSEMKRVGLCPNTITYSILLVASEKKDDLEVGLMLLSQAKKDGVAPNLVMCRCFIAMCIRRFERACTLGEPVLSFNPGWPQIDSKWTSLALMVYRETIAAGVVPTEEEFSQVLGCLQLPHDSSLRNRLIENLGVSTDTSRSSNLCSLVDGFGEYDPRAFSLLEEAASLGIVPCVSFKESPIFVDARKLQIHTAEVYLLTVLKGLKHRLAAGAKLPNITILLPIEKTQIQSPNGEKTINLAGRISQAIAALLRRLRLPYQGNESYGKIRINGIAVKRWFQPKLASPFSGKQTEL----SWLGKGITHQQRNIRTGNLSLD 1108    
BLAST of XM_017402616.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6I157 (PPR_long domain-containing protein {ECO:0000259|Pfam:PF17177})

HSP 1 Score: 1127.46 bits (2915), Expect = 0.000e+0
Identity = 613/1127 (54.39%), Postives = 770/1127 (68.32%), Query Frame = 0
 
Query:    4 FSPKSQTLSLLSSS-----NSAFTSPCSLRRQFVGSGHIFRPPGNLCYRKKWKKKKRIGFDIDA-SRGRLVVVKASISSQSIVVLIAVVAVSAITAAYLNYRQRKPKQHELPGPV------------------------DDQNTVHDKEDNA------ELASSSHSRTAILSSLPVLQAQSNAHPVDLDLEEEEIVVKQNAQ------ESKSSSDLALSETVSQLDAALVLPNHTEIKVDQVDKLRHEIE-------------SSAATVSLNCVVSGVVELDKPNDETIDEARVDKYAG-NGDSVRRELHTFYEANQSHVPPGENSDSVKPVHSHASSSETYSI-YPLNRSYINGAKFSTLDILPTSGNHEGRPHLGFSAEVSFRKSKGSGKRHEFFSQNEREMIDQNG-------HRSSLISSYIKEKHINERRSRSERSTAYRRLLKEGRLVDCLELLEDMEKQNLLDMDKIYHAGFFRNCKTQRAVKEAFRFTKLIPNPTLSTFNMLLSVCASSQ-HLEAFQVMQLVQEAELKADCKLYTTLISTCAKCGKVDSMFKVFHEMVNAGVEPNVHTYGALIDGCAKVGMVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMRAETIPVDPDHVTVGALIKACANAGQVVRAQEVYNMISKYNIRGTPELYTIAINSSSLTGDWEFACNVYNDMREKGVIPDEMFISAFIDVAGHSNKLESAFEILQKAKSDGMNVGIISYSSLMGACSNAKNWQMALELHEEIKDMNIKPTISTMNALITALCDGDQLQKALEVLSDMKKVGLCPNTITYSILLVACEKNDDLEVGLMLLSQAKKDGIAPNLVMCRCLIALCLRRFEKSCTLGEDVLSLNSGRPQIDSKWTSIVLRVYREAIIAGVVPTTEEFSQVLGCLRLPHDSSLRARLIENLGVIDSTSNNSNLCSLLDGFGEYDPRAFSLLEEAASLGILPSVSFKDIPIVVDVRNLQIHSAEVFLLTVLKSLKHRLAAGVKLPNIIILLPIDKIQVQSSKGDKMINLAGRTSRAVAALLRRLAIPYIGNESFGKIRMNGVVVKKWLQPKLTSPFRGKLSNLNSSQSHLGRNISLQQRNIRIGNLSLE 1065
            FS KSQ L+L+S +      S  +S  +LRR+F+G GH  RPPG     +  KK K I F I + SR      KAS+ SQ ++V++AV AV A +  +L+Y +R+    E+ GP                         D      +KE  A      E++ +S  + A    + ++Q ++  H  +        V+  NA+      E++ +    L   +S+      L   TE+   Q+++ + E E             S AA+V     + GV E         +E+ +  + G   D++R EL+TFYEA QS + P  N + +K + S+AS  +   + + +  +    A+ S  +   ++   EG+  L      S  K   SGKR++   + +    D+NG       HR+           + E+   SE+ +AY RLL EGRL DC++LLEDMEK  LLDMDK+YHA FF+ C++Q+AV EAFRF KLIP PTLSTFNML+SVCA+SQ    AFQV+QLV+EA LKADCKLYTTLISTCAK GKVD+MF+VFHEMVNA VEPNVHTYGALIDGC + G VAKAFGAYGIMRSK V+PDRVVFNALI+ACGQSGAVDRAFDVLAEMRAET P+DPDH+TVGALIKAC NAGQV RA+EVY MI +YNI+GTPE+YTIA++S S  GDWEFA +VY DM  KGV+PDEMF+SA IDVAGH+ KL++AFE++Q+A+  G+ +GI+SYSSLMGACSNAKNWQ ALEL+ +IK M + PT+STMNALITALC+G+QL+KA+EVLSDMK+ GLCPNTITYSILLVA EK DD++VGLM+LSQA+KD +APNLVMCRCL+ +CLRRFEK+C LGE VLS NSGRPQID+KWTS  L VYRE + AGV+PT E  SQVLGCL+ P D SLR RLIENLGV    S  SNLCSL+DGFGEYD RAFSLLEEAASLG++  VSFK  P++VD R LQI  AEV+LLTVLK LKHRLAAG KLP++ ILLP +  QV + KG+K INLAGR S+AVA++LRRL +PY GNES GKIR+NG+  ++W QPKL  PF GK+  L+SSQS LG  ISLQQR IR GNLSL+
Sbjct:    5 FSAKSQALTLISCTPLYSSPSPSSSFSTLRREFLGCGHNLRPPG----LRSPKKCKNIRFRIQSPSR---FYFKASLGSQPVLVVVAVAAVFAFSVVFLSYSRRRKNSREVSGPSGFAISQLSRDVMNQFMESAILGFGDLHKETSEKESRATMDIVEEVSHASKDKEAPWQEIALMQEET--HVTNTSESSRLDVLSSNAKNCVSVRETEEAGPSILPPLLSESGLLQPLVFATEMPELQLEERQMETEFGYDLSTPVVQTKSIAASVPDIIALEGVNERKNRGGRPGEESEIISFTGIFRDTIREELYTFYEAKQSVMKPMPNFNGIKTLASNASLLDGNGVSFQMRNATSKEAELSAQNSHSSADYVEGKMSL------SCYKEGSSGKRNDLV-KGKGFPRDKNGRLPPLSDHRNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHAKFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDIKSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDIDVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSSALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLIDGFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAEVYLLTVLKGLKHRLAAGAKLPSMTILLPTETTQVLAPKGEKAINLAGRISQAVASMLRRLGLPYQGNESRGKIRINGLATRRWFQPKLAGPFSGKVDELSSSQSRLGTGISLQQRKIRTGNLSLD 1115    
BLAST of XM_017402616.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6QR99 (PPR_long domain-containing protein {ECO:0000259|Pfam:PF17177})

HSP 1 Score: 1125.54 bits (2910), Expect = 0.000e+0
Identity = 608/1106 (54.97%), Postives = 776/1106 (70.16%), Query Frame = 0
 
Query:    2 MIFSPKSQTLSLLSSS---NSAFTSPCSLRRQFVGSGHIFRPP-GNLCYRKKWKKKKRIGFDIDASRGRLVVVKASISSQS--IVVLIAVVAVSAITAAYLNYRQRKPKQHELPGPVD------DQNTVH--------DKEDNA---ELASSSHSRTAILSSLPVLQAQSNAHPVDLD-LEEEEIVVKQNAQESKSSSDLALSET-------------VSQLDAALVLPNHTEIKVD-QVDKLRHEIESSAATVSLNCVVSGVVELDKPNDETIDEAR-VDKYAGNGDSVRRELHTFYEANQSHVPPGENSDSVKPVHSHAS--SSETYSIYPLNRSYINGAKFSTLDILPTSGNHEGRPHLGFSAEVSFRKSKGSGKRHEFFSQNEREMIDQNGHRSSLISSYIKEKHINERRSRSERSTAYRRLLKEGRLVDCLELLEDMEKQNLLDMDKIYHAGFFRNCKTQRAVKEAFRFTKLIPNPTLSTFNMLLSVCASSQHLE-AFQVMQLVQEAELKADCKLYTTLISTCAKCGKVDSMFKVFHEMVNAGVEPNVHTYGALIDGCAKVGMVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMRAETIPVDPDHVTVGALIKACANAGQVVRAQEVYNMISKYNIRGTPELYTIAINSSSLTGDWEFACNVYNDMREKGVIPDEMFISAFIDVAGHSNKLESAFEILQKAKSDGMNVGIISYSSLMGACSNAKNWQMALELHEEIKDMNIKPTISTMNALITALCDGDQLQKALEVLSDMKKVGLCPNTITYSILLVACEKNDDLEVGLMLLSQAKKDGIAPNLVMCRCLIALCLRRFEKSCTLGEDVLSLNSGRPQIDSKWTSIVLRVYREAIIAGVVPTTEEFSQVLGCLRLPHDSSLRARLIENLGVIDSTSNNSNLCSLLDGFGEYDPRAFSLLEEAASLGILPSVSFKDIPIVVDVRNLQIHSAEVFLLTVLKSLKHRLAAGVKLPNIIILLPIDKIQVQSSKGDKMINLAGRTSRAVAALLRRLAIPYIGNESFGKIRMNGVVVKKWLQPKLTSPFRGKLSNLNSSQSHLGRNISLQQRNIRIGNLSLE 1065
            +  SPK Q L+L+  +   +S  ++  S+RR F+G     RPP G L  R+K +K   +G  + + R    + +AS+ S S  ++V++AVV  SA++    N   RK    E+ GP +       QN ++         KE N    ++  SSH+       +P+L    N+  +D D L  + + +  +   + S SD + +                 ++ A  V     EI  D ++  L   IE +A++V++N   + V   DK NDE  +E + +      G+SVR EL+ FYEAN+S      +S ++K    HAS  +   YS   +  S + GA+ S    L T+   +G+  +    E    + + SGK + F    E   + QN ++      +     + +++  SE+ +AY RLLKEGRL  C+ELLEDME+  LLDM+K+YH  FF  CK+Q+AV EAFR+TKLIPNPTLSTFNML+SVC SSQ  E AF+ ++LVQEA LKADCKLYTTLISTCAK GKVD+MF+VFH+MVNAGVEPNVHTYGALIDGCA+ G VAKAFGAYGI+RSK VKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AET P+DPDHVT+GALIKACANAGQV RA+EVY +I +YNI+GTP++YTIA+N  S TGDWEFAC+VY+D+   GV+PDEMF+SA ID AGH+ +L++AFEILQK +  G+ +GI+SYSSLMGACSNAKNWQ ALEL+E++K M +K TIST+NALITALCDGDQL KA+EVLS+MK++GL PN+ITYSILLVA EK DDLE GLMLLSQAKKDGI  NLVM  C++ +CLR FEK+CTLGE VLS +SGRP +D+KWTS+ L VYRE I+AGV+PT E  SQVLGCL+LP D+SL+ +LIENLGV   TS  SNLCSL+DGFGEYDPR FSL+EEAASLGI+P VSFK  PIVVDVRNLQ H+AE++LLTVLK LKHRLAAG KLPNI +LL +DK    S KG++ INLAGR S+AV ALLRRL + Y GNES+GKIR+NG+ +++W QPKLTSPF GK  + +SSQS LG+ I  QQR+IRIGNLS++
Sbjct:    3 VTLSPKPQALTLIPCTPLSSSFSSNLHSIRRDFLGCSRALRPPAGTLRSRRKQRK---LGLRVHSPR---FIFRASLESHSSVLIVVVAVVTFSAVSVVLFNRYGRKKNDREVSGPPNFALSELGQNVMNWVFGGLHKGKERNRLRDKIGDSSHASKD--EEVPLL--FQNSALIDEDALITKTLPLPGSDGLTSSISDSSYTNGPVFDSCAVQSLTFAKEMTALQVEGPEEEIDSDLELPTLMDNIELNASSVNINNSPAEVNAFDKANDEHGEEGKTISDSVFIGESVREELYMFYEANESVEKSTASSSTLKSFSHHASVLNGNKYSSI-MRSSALRGAELSARVSLQTTEYVQGKVPIANHKEGLPHRRRDSGKGNGFPRDREIRHMSQNNYKIFPQFPHPSRMQVTDKKHPSEQLSAYNRLLKEGRLTKCVELLEDMERSGLLDMNKVYHVKFFEKCKSQKAVTEAFRYTKLIPNPTLSTFNMLMSVCGSSQDSEGAFRALRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHKMVNAGVEPNVHTYGALIDGCARAGQVAKAFGAYGILRSKKVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAETQPIDPDHVTIGALIKACANAGQVDRAREVYKLIHQYNIKGTPDVYTIAVNCCSQTGDWEFACSVYDDITRNGVVPDEMFLSALIDAAGHAGRLDAAFEILQKVRVQGIQIGIVSYSSLMGACSNAKNWQKALELYEDLKSMKMKQTISTVNALITALCDGDQLPKAMEVLSEMKELGLSPNSITYSILLVASEKKDDLEAGLMLLSQAKKDGIIHNLVMRGCIVGMCLRGFEKACTLGEPVLSFDSGRPHVDNKWTSVALMVYRETIVAGVMPTIEVLSQVLGCLQLPCDASLKDKLIENLGVSGDTSRCSNLCSLIDGFGEYDPRVFSLIEEAASLGIVPCVSFKGSPIVVDVRNLQTHTAEIYLLTVLKGLKHRLAAGAKLPNINVLLSVDKTNFMSPKGERTINLAGRVSQAVTALLRRLGLEYQGNESYGKIRINGLTLRRWFQPKLTSPFSGKPGDGSSSQSRLGKGIIHQQRDIRIGNLSMD 1097    
BLAST of XM_017402616.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9IRS2 (PPR_long domain-containing protein {ECO:0000259|Pfam:PF17177})

HSP 1 Score: 1124.38 bits (2907), Expect = 0.000e+0
Identity = 611/1115 (54.80%), Postives = 772/1115 (69.24%), Query Frame = 0
 
Query:    2 MIFSPKSQTLSLLSSSNSAFTSPCSLR---RQFVGSGHIFRPPGNLCYRKKWKKKKRIGFDIDASRGRLVVVKASISSQSIVVLIAVVAVSAITAAYLNYRQRKPKQHELPGPV------------DDQNTV-----------HDKEDNAEL----ASSSHSRTAILSSLPVLQAQSNAHPVDLD---LEEEEIVVKQNAQESKSSSDLALSETVSQLDAALVLPNHTEIKVDQVDKLRHEIES-------------SAATVSLNCVVSGVVELDKPNDETIDEARVDKY-AGNGDSVRRELHTFYEANQSHVPPGENSDSVKPVHSHASSSETYSIYPLNRSYINGAKFSTLDILPTSGNHEGRPHLGFSAEVSFRKSKGSGKRHEFFSQNEREMIDQNGHRSSLISSYIKEK---HINERRSRSERSTAYRRLLKEGRLVDCLELLEDMEKQNLLDMDKIYHAGFFRNCKTQRAVKEAFRFTKLIPNPTLSTFNMLLSVCASSQHLE-AFQVMQLVQEAELKADCKLYTTLISTCAKCGKVDSMFKVFHEMVNAGVEPNVHTYGALIDGCAKVGMVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMRAETIPVDPDHVTVGALIKACANAGQVVRAQEVYNMISKYNIRGTPELYTIAINSSSLTGDWEFACNVYNDMREKGVIPDEMFISAFIDVAGHSNKLESAFEILQKAKSDGMNVGIISYSSLMGACSNAKNWQMALELHEEIKDMNIKPTISTMNALITALCDGDQLQKALEVLSDMKKVGLCPNTITYSILLVACEKNDDLEVGLMLLSQAKKDGIAPNLVMCRCLIALCLRRFEKSCTLGEDVLSLNSGRPQIDSKWTSIVLRVYREAIIAGVVPTTEEFSQVLGCLRLPHDSSLRARLIENLGVIDSTSNNSNLCSLLDGFGEYDPRAFSLLEEAASLGILPSVSFKDIPIVVDVRNLQIHSAEVFLLTVLKSLKHRLAAGVKLPNIIILLPIDKIQVQSSKGDKMINLAGRTSRAVAALLRRLAIPYIGNESFGKIRMNGVVVKKWLQPKLTSPFRGKLSNLNSSQSHLGRNISLQQRNIRIGNLSLE 1065
            + FS   QTL+L+S +   F+S   LR   RQF+GS H  RPP +    +     +R    +   +    +V+AS+ S S++V++AVV  SA++  +LN  +RK    E+ G              D  N V           H KE++ EL      + H+     + L + Q  +  H   LD   LE    VV        SS++++L     ++     L    E+   QV+  + EI S             SAA++++    + V E  K NDE  +E +   Y A  G+S R+EL+ FYEA  +  P      S  P  +  +S++  S+  +  + + GA+ S    L ++   +G+  +      S+++S    +R           I Q   ++  IS    +    H+ E+   SE+ +AY RLLK+GRL +C++LLE ME++ LLDM+K+YH  FF  CK Q+AV+EAF +TKLIPNPTLSTFNML+SV ASSQ  E AFQV+QLVQ+A LK DCKLYTTLISTCAK GKVD+MF+VFH+MVNAGVEPNVHTYGALIDGCA+ G VAKAFGAYGIMRSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AET P+DPDH+TVGAL+KACANAGQV RA+EVY MI +YNI+GTPE+YTIAI+  S TGDWEFAC+VY DM  KGV+PDEMF+SA ID AGH+ KL++AFEILQKA+  G++VGI+SYSSLMGACSN+KNWQ ALEL+E++K M IK T+ST+NALITALCDGDQLQKA+EVL DMK +G  PN+ITYSILLVA EK DDLE G+MLLSQAKKDGI PNLVMCRC+I +CLRRF+++C LGE VLS +SGRPQI+++WTS  L VYR+ I+AG++P  +  SQVLGCL+LP+D+SL+ RLIENLGV    S  SNLCSL+DGFGEYDPRAFSL+EEAASLGI+P VSFK  PIVVD RNLQ H+AEV+LLTVLK LKHRLAAG KLPNI ILLP++K Q  S KG+K INLAGR S+A++ALLRRL + Y GNES+GKIR+NG+ +++W QPKL SPF GK    +SSQS LG+ I  QQR+IR GNLSLE
Sbjct:    3 VTFSSNPQTLTLISCT--PFSSSSKLRSIHRQFLGSAHTLRPPTSATLLRSRTNHRRRKLGLPRFQSPRFLVRASLDSHSVLVVVAVVTFSAVSVFFLNRYRRKKNDREVSGDSGPPKFVLSELGQDVMNWVFEGLIVGFGGQHVKEESKELKDKIGENGHASEDEQAPL-IFQTSALIHEEALDTKTLESPGSVVL------TSSANISLHSNEPEVGVLHPLTFGKEMTALQVEGSKEEIASDLKLPMLMGNINHSAASINIYDPPAEVNECKKENDELGEEHKTISYNALVGESGRKELYMFYEAKSTANP--SILKSFSPRATLLNSNKYSSL--MRNTALKGAESSAQVSLHSAEYVKGKEPVA-----SYKESVPHNRRDSGKGIPRDSKIKQLLKKNYKISPQFPQPNGMHVTEKSHPSEQLSAYNRLLKDGRLTECVQLLEHMERRGLLDMNKVYHVRFFETCKRQKAVREAFHYTKLIPNPTLSTFNMLMSVYASSQDSEGAFQVLQLVQDAGLKVDCKLYTTLISTCAKSGKVDAMFEVFHKMVNAGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAETQPIDPDHITVGALMKACANAGQVDRAREVYKMIHQYNIKGTPEVYTIAISCCSQTGDWEFACSVYGDMTSKGVVPDEMFLSALIDAAGHAEKLDAAFEILQKARVQGIHVGIVSYSSLMGACSNSKNWQKALELYEDLKSMKIKQTVSTVNALITALCDGDQLQKAVEVLFDMKGLGFSPNSITYSILLVASEKKDDLEAGIMLLSQAKKDGICPNLVMCRCIIGMCLRRFQEACKLGEPVLSFDSGRPQINNEWTSEALMVYRDTIVAGLMPAIDVLSQVLGCLQLPYDASLKNRLIENLGVSCDASGCSNLCSLIDGFGEYDPRAFSLIEEAASLGIVPYVSFKQSPIVVDARNLQTHTAEVYLLTVLKGLKHRLAAGAKLPNINILLPVEKTQFLSPKGEKTINLAGRVSQAISALLRRLGLQYQGNESYGKIRINGLTLRRWFQPKLASPFSGKPGEWSSSQSRLGKEIIHQQRDIRTGNLSLE 1099    
BLAST of XM_017402616.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QQ48 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PSS12043.1}))

HSP 1 Score: 1122.84 bits (2903), Expect = 0.000e+0
Identity = 560/865 (64.74%), Postives = 671/865 (77.57%), Query Frame = 0
 
Query:  208 HEIESSAATVSLNCVVSGV-VELD---KPNDETIDEARVDKYAG-NGDSVRRELHTFYEANQSHVPPGENSDSVKPVHSHASSSETYSIYP-LNRSYINGAKFSTLDILPTSGNHEGRPHLGFSAEVSFRKSKGSGKRHEFFSQNEREMIDQNGHRSSLISSYIKEKHINERRSRSERSTAYRRLLKEGRLVDCLELLEDMEKQNLLDMDKIYHAGFFRNCKTQRAVKEAFRFTKLIPNPTLSTFNMLLSVCASSQHLE-AFQVMQLVQEAELKADCKLYTTLISTCAKCGKVDSMFKVFHEMVNAGVEPNVHTYGALIDGCAKVGMVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMRAETIPVDPDHVTVGALIKACANAGQVVRAQEVYNMISKYNIRGTPELYTIAINSSSLTGDWEFACNVYNDMREKGVIPDEMFISAFIDVAGHSNKLESAFEILQKAKSDGMNVGIISYSSLMGACSNAKNWQMALELHEEIKDMNIKPTISTMNALITALCDGDQLQKALEVLSDMKKVGLCPNTITYSILLVACEKNDDLEVGLMLLSQAKKDGIAPNLVMCRCLIALCLRRFEKSCTLGEDVLSLNSGRPQIDSKWTSIVLRVYREAIIAGVVPTTEEFSQVLGCLRLPHDSSLRARLIENLGVIDSTSNNSNLCSLLDGFGEYDPRAFSLLEEAASLGILPSVSFKDIPIVVDVRNLQIHSAEVFLLTVLKSLKHRLAAGVKLPNIIILLPIDKIQVQSSKGDKMINLAGRTSRAVAALLRRLAIPYIGNESFGKIRMNGVVVKKWLQPKLTSPFRGKLSNLNSSQSHLGRNISLQQRNIRIGNLSLE 1065
            H + ++A +   N +V  V VE+D   +P  E  +   +  Y G   +S R  L+TF +ANQS V      + +K + SHAS  +  S    + +S  NG K S  D   T+   EG+  L      S R+S   G+   F  + ER ++ Q+G R  L  S     H+N++   S + +AY  LLK+GRL++CLELLEDME + LLDMDK+YHAGFF+ C+ QRAVKEAFRFTKLI NPTLSTFNML+SVCA SQ  E AF+VM+LVQEA LK DCKLYTTLISTCAK GKVD+MFKVFHEMVNA VEPNVHTYGALIDGCAK G VAKAFGAYGIMRSK VKPDRVVFNALI+ACGQSGAVDRAFDVLAEM  ET P+DPD VT+GALIKACA+ GQV RA++ YNMI +Y+I+GTPE+YTIA+NS S TGDWEFAC+VY DM+ KGVIPDEMF+SA IDVAGH+ K+ +AFE LQ+A+  G+++G +SYSSLMGACSNAKNWQ ALEL+E+IK + +KPT+STMNALITALCDGDQL KALEV S+MK++GLCPNTITYSILLVA EK DD++VGLMLLSQAKKDG+ PNLVM +CLIA+CLRRFEK+C L E V+S NSGRPQ+DSKWTS+ L VYRE I+AGVVPT E FSQ+LGCL+LPHD+SL+ RLIENL V   +   SNLCSL+DGFGEYDPRAFSL EEAASLGI+P VSFK+ PIVVD R LQIH+AEV+LLTVLK LK RLAAG +LPN  ILLP ++ QVQS  G+K I LA R  + VAALLRRL + Y+G+ES+GKIR++GV VK+W +PKL+SPF GK   L+  +S LG+ IS QQRNIRIGN  L+
Sbjct:  249 HALIANAPSSEANGLVYNVQVEVDDYKRPFCELSEADEIISYGGIFKESGREGLYTFCKANQSAVKSKSKLNGLKTLSSHASLQDKNSFSSQMRKSTTNGVKLSNQDFNHTAETIEGKIPLACYEGGSPRESTDFGRSRSFLRE-ERRIMPQDGRRYILQPSQPNGIHVNDKNYLSRQMSAYNCLLKDGRLLNCLELLEDMEGKGLLDMDKVYHAGFFKYCQRQRAVKEAFRFTKLIRNPTLSTFNMLMSVCARSQDSEGAFEVMRLVQEAGLKTDCKLYTTLISTCAKSGKVDAMFKVFHEMVNAEVEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKKVKPDRVVFNALITACGQSGAVDRAFDVLAEMTTETQPIDPDQVTIGALIKACASVGQVDRARDAYNMIDQYHIKGTPEVYTIAVNSCSQTGDWEFACSVYRDMKRKGVIPDEMFLSALIDVAGHAGKVCAAFETLQEARKQGIHIGSMSYSSLMGACSNAKNWQKALELYEDIKSITLKPTVSTMNALITALCDGDQLPKALEVFSEMKRMGLCPNTITYSILLVASEKKDDVDVGLMLLSQAKKDGVTPNLVMSKCLIAMCLRRFEKACALDEPVISFNSGRPQLDSKWTSLALMVYRETIVAGVVPTVELFSQLLGCLQLPHDASLKNRLIENLEVSTDSPTRSNLCSLVDGFGEYDPRAFSLFEEAASLGIVPCVSFKESPIVVDARKLQIHTAEVYLLTVLKGLKRRLAAGARLPNTTILLPTERTQVQSPAGEKTIYLAARIGQVVAALLRRLGLQYLGHESYGKIRIHGVAVKRWFKPKLSSPFGGKPMGLSLLESRLGKGISNQQRNIRIGNYFLD 1112    

HSP 2 Score: 43.1282 bits (100), Expect = 3.679e-1
Identity = 40/111 (36.04%), Postives = 59/111 (53.15%), Query Frame = 0
 
Query:    4 FSPKSQTLSLLS-------SSNSAFTSPCS---LRRQFVGSGHIFRPPGNLCYRKKWKKKKRIGFDIDASRGRLVVVKASISSQSIVVLIAVVAVSAITAAYLNYRQRKPK 104
             S KSQTLSL+S         +S+F SP     LRR+F            L  R + ++ K +GF I   R    + +AS+ SQS ++++ VV VSA+T  +LN+ +RK K
Sbjct:    5 LSAKSQTLSLISFQPLSSSYRSSSFLSPARIGWLRREF------------LVLRSR-RRCKNLGFCIRTPR---FIFRASLDSQSALLVVGVVTVSALTVFFLNHFRRKKK 99    
BLAST of XM_017402616.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2H5Q8K3 ((Uncharacterized protein {ECO:0000313|EMBL:GAY60974.1}))

HSP 1 Score: 1120.53 bits (2897), Expect = 0.000e+0
Identity = 606/1096 (55.29%), Postives = 764/1096 (69.71%), Query Frame = 0
 
Query:    3 IFSPKSQTLSLLSSSNS----AFTSPCS----LRRQFVGSGHIFRPPGNLCYRKKWKKKKRIGFDIDASRGRLVVVKASISSQSIVVLIAVVAV----SAITAAYLNY-----RQRKPKQ---HELPGPVD-DQNTVHDKEDNAELASSSHSRTAILSSLPVLQAQSNAHPVDLDLEEEEIVVKQNAQESKSSSDLALSETVSQL--------DAALVLPNH--TEIKVDQVDKLRHEIESSAATVSLNCVVSGVVELDKPNDETIDEARVDKYAGNGDSVRRELHTFYEANQSHVPPGENSDSVKPVHSHASSSETYSIYPLNR-SYINGAKFSTLDILPTSGNHEGRPHLGFSAEVSFRKSKGSGKRHEFFSQNEREMIDQNGHRSSLISSYIKEKHINERRSRSERSTAYRRLLKEGRLVDCLELLEDMEKQNLLDMDKIYHAGFFRNCKTQRAVKEAFRFTKLIPNPTLSTFNMLLSVCASSQHLE-AFQVMQLVQEAELKADCKLYTTLISTCAKCGKVDSMFKVFHEMVNAGVEPNVHTYGALIDGCAKVGMVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMRAETIPVDPDHVTVGALIKACANAGQVVRAQEVYNMISKYNIRGTPELYTIAINSSSLTGDWEFACNVYNDMREKGVIPDEMFISAFIDVAGHSNKLESAFEILQKAKSDGMNVGIISYSSLMGACSNAKNWQMALELHEEIKDMNIKPTISTMNALITALCDGDQLQKALEVLSDMKKVGLCPNTITYSILLVACEKNDDLEVGLMLLSQAKKDGIAPNLVMCRCLIALCLRRFEKSCTLGEDVLSLNSGRPQIDSKWTSIVLRVYREAIIAGVVPTTEEFSQVLGCLRLPHDSSLRARLIENLGVIDSTSNNSNLCSLLDGFGEYDPRAFSLLEEAASLGILPSVSFKDIPIVVDVRNLQIHSAEVFLLTVLKSLKHRLAAGVKLPNIIILLPIDKIQVQSSKGDKMINLAGRTSRAVAALLRRLAIPYIGNESFGKIRMNGVVVKKWLQPKLTSPFRGKLSNLNSSQSHLGRNISLQQRNIRIGNLSLE 1065
            IFSPKSQ L+L ++ +S     + +P S    +RRQF+       PP   C          +G  +  +R    +VKAS+ S    VLIAVV       A + AYLN+     R+   KQ    ++ G      + V D  +N  +  SS    +++  +      SN    + + E+E   V      +++S  +     VS          D+  V P+   TE+   Q+ K + +IES           S V+E D   + ++       Y    +SVR E      A+QS +    N + VK + SHAS    YS+  L R +   G + S  + L T+ + EG+  L    E    K K   +   F   NER  + Q G ++ L   Y   KH N     SE+  +Y RL+++GR+ +C++LLEDME++ LLDMDK+YHA FF  CK+Q+A+KEAF F KL+ NPTLSTFNML+SVCASS+  E AFQV++LVQEA LKADCKLYTTLI+TCAK GKVD+MF+VFHEMVNAG+EPNVHTYGALIDGCAK G VAKAFGAYGIMRSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE  PVDPDH+T+GAL+KACANAGQV RA+EVY MI KYNI+GTPE+YTIAIN  S TGDWEFAC+VY+DM +KGVIPDE+F+SA ID AGH+ K+E+AFEILQ+AK+ G++VGIISYSSLMGACSNAKNWQ ALEL+E +K + +KPT+STMNALITALCDGDQL K +EVLSDMK +GLCPNTITYSILLVACE+ DD+EVGLMLLSQAK+DG+ PNLVM +C+I +C RR+EK+ TL E VLS NSGRPQI++KWTS+ L VYREAI+AG +PT E  S+VLGCL+LP+++ +R RL+ENLGV       SNLCSL+DGFGEYDPRAFSLLEEAAS GI+P VSFK+IP+VVD R L+IH+A+V+LLT+LK L+HRLAAG KLPN+ ILLP++K Q+ S  G+K I++A RT++A+AALLRRL +PY GN S+GKIR+NG+ +K+W QPKL SPF GK   L+S Q  LG+ I+ QQRNIR GNLSLE
Sbjct:    5 IFSPKSQALTLTTTCSSPPPLTWLNPSSSLHPIRRQFLLLRPQTPPPRRKC--------NSLGLLLH-TRSPQFLVKASLRSPPNSVLIAVVVALATFVAFSLAYLNHFLQNRRKNSSKQVSDSKIRGSRQLSSDAVDDIIENQIVRISSGENESLMMEI----GGSNQVSEERN-EQETTFVPDCTYMTETSVSIGADSFVSPQECPPFMLSDSGGVQPHSFATEMSELQLGKEQKDIESCE---------SSVLENDAHAEVSVPTV---SYGVLTESVREEQFACGRASQSVLKSPANLEFVKAISSHASPLNGYSLSSLKRDTEPKGPELSLQEALQTAEHVEGKIRLACHREGPSHKIKARRRSRNFPRNNERRNLMQVGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFCFFKLVSNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYEMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASPFSGKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 1072    
BLAST of XM_017402616.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4B0F6 ((pentatricopeptide repeat-containing protein MRL1, chloroplastic-like isoform X2 {ECO:0000313|RefSeq:XP_016482268.1}))

HSP 1 Score: 1110.52 bits (2871), Expect = 0.000e+0
Identity = 589/1097 (53.69%), Postives = 761/1097 (69.37%), Query Frame = 0
 
Query:    3 IFSPKSQTLSLLSSSNSAFTSPCSLRRQFVGSGHI---FRPPGNLCYRKKWKKKKRIGFDIDASRGRLVVVKASISSQSIVVLIAVVAVSAITAAYLNYRQR----KPKQHELPGPVDDQNTVHDKEDNA--------------------------ELASSSHSRTAILSSLPVLQAQSNAHPVDLDLEEEEIVVKQNAQESKSSSDLALSETVSQLDAALVLPNHTEIKVDQVDKLRHEIESSAATVSLNCVVSGVVELDKPNDETIDEARVDKYAGNGDSVRRELHTFYEANQSHVPPGENSDSVKPVHSHASSSETYSIYPLNRSYINGAKFSTLDILPTSGNHEGRPHLGFSAEVSFRKSKGSGKRHEFFSQNEREMIDQNGHRSSLISSYIKEKHINERRSRSERSTAYRRLLKEGRLVDCLELLEDMEKQNLLDMDKIYHAGFFRNCKTQRAVKEAFRFTKLIPNPTLSTFNMLLSVCASSQHLE-AFQVMQLVQEAELKADCKLYTTLISTCAKCGKVDSMFKVFHEMVNAGVEPNVHTYGALIDGCAKVGMVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMRAETIPVDPDHVTVGALIKACANAGQVVRAQEVYNMISKYNIRGTPELYTIAINSSSLTGDWEFACNVYNDMREKGVIPDEMFISAFIDVAGHSNKLESAFEILQKAKSDGMNVGIISYSSLMGACSNAKNWQMALELHEEIKDMNIKPTISTMNALITALCDGDQLQKALEVLSDMKKVGLCPNTITYSILLVACEKNDDLEVGLMLLSQAKKDGIAPNLVMCRCLIALCLRRFEKSCTLGEDVLSLNSGRPQIDSKWTSIVLRVYREAIIAGVVPTTEEFSQVLGCLRLPHDSSLRARLIENLGVIDSTSNNSNLCSLLDGFGEYDPRAFSLLEEAASLGILPSVSFKDIPIVVDVRNLQIHSAEVFLLTVLKSLKHRLAAGVKLPNIIILLPIDKIQVQSSKGDKMINLAGRTSRAVAALLRRLAIPYIGNESFGKIRMNGVVVKKWLQPKLTSPFRGKLSNLNSSQSHLGRNISLQQRNIRIGNLSLE 1065
            IFSPK  TLSL+S S    +S    RR    SG I    R PG L  R+K +    IGF   A   R V+ +AS+ SQS+VV+ AVV +SA+T  +  + +R    K ++  +  P+ + + V ++ +N                           ++ASSS     + +      A+S+  P     E     ++++ Q +K+S+ L   E  S+    L    + +  +++  K  H +           +V G +++   +    DE  +       DS R+EL++F+EA+       +N +  K + SHAS  E  S++         +  S +  +      E RPH G   E  F  +K  GKR   F++ E+ ++  NG+         K   + +    S++  AYR  L+EGRL+DC+E L++ME+   L+MDK+YHAGFF+ CK+Q+AVKEAFRFTKLI NPTLSTFNMLLSVCASS+ LE AF+V+QLV+E  LK DCKLYTTLISTCAK GKVD+MF+VFHEMVNAGVEPNV+TYGALIDGCAK G VAKAFGAYGIMRSKNVKPDRVVFNALI+ACGQSGAVDRAFDVL+EM+AE  P++PD +T+GAL+KACANAGQV RA +VY MI KY+I+GT E+YTIA+N  S   +W+FA ++Y+DM  KGV PDEMFISA +DVAGH+ KL++AF++L++A++ G+NVG +SYSSLMGACSNAKNWQ ALEL+E+IK + +KPT+S MNAL+TALCD DQ QKALE+ S+MK+V LCPNTITYS LLVA EK DDL++GLMLLS AKKDG++PNLVMCRCL+A+CLRRF+K+CTLGE VLS NSGR Q+DSKWTS+ L +YRE I AGVVPT +E S VLGCL+LP D+SL+ RLIENLG+   TS  SNLCSL+DGFGEYDPRAFSLLEEAASLG +P  S K  P+ VD RNL IH+A+V+LLTVLK LKHRLAAG K+PNI ILLP+++  +Q+  G+K I +AGR +RAVAALLRRL +PY GNES+GKIR+NGV+VK+W QPKL SPF  + +NL+ SQ+ L + IS QQRNIR  NLSL+
Sbjct:    4 IFSPKPHTLSLISCS--PISSSLIPRRHQCLSGSIQNNLRSPGLLRLRRKCRN---IGFQFSAHSSRFVL-RASLDSQSVVVVAAVVTISALTIIFFEFSKRNANIKEEEKSIETPMKEVSKVSNERENGGTDVQLGGTYLMQTVITNKIESADANQMASSSGGSLTLGAPGSNTHAESDVIPSSFVAELHNNYLQEHLQGTKTSNRLTTEEVSSEHSVGLFPAINIDKGIEETKKTDHAL-----------MVDGGLKIAHKHVAE-DEVSIHNLIFR-DSARKELYSFFEAST------KNLNGQKALTSHASG-ERISVF---------SHTSKVSSIQAEDFKEKRPH-GCYKEGPF-NNKDIGKRKHHFTKKEKSILLDNGNTKQFPIPNPKGIQVCDGPQPSDQFRAYRHFLREGRLMDCIERLDNMERHGSLNMDKVYHAGFFQACKSQKAVKEAFRFTKLIQNPTLSTFNMLLSVCASSRDLEGAFRVLQLVRETGLKPDCKLYTTLISTCAKAGKVDTMFEVFHEMVNAGVEPNVNTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLSEMKAEARPIEPDQITIGALMKACANAGQVDRALDVYRMIDKYDIKGTAEVYTIAVNCCSQNDNWDFARSIYDDMTRKGVYPDEMFISALVDVAGHAGKLDAAFDVLEEARTKGINVGSMSYSSLMGACSNAKNWQKALELYEDIKGVKLKPTVSMMNALVTALCDADQYQKALEIFSEMKRVDLCPNTITYSTLLVASEKKDDLDIGLMLLSHAKKDGVSPNLVMCRCLLAMCLRRFQKACTLGEPVLSYNSGRLQLDSKWTSLALMIYRETIAAGVVPTMDELSLVLGCLQLPRDASLKERLIENLGLTVETSKGSNLCSLIDGFGEYDPRAFSLLEEAASLGTIPLTSLKGNPVAVDARNLHIHTAQVYLLTVLKGLKHRLAAGAKIPNISILLPVEQSHIQTPTGEKTIKIAGRINRAVAALLRRLGLPYQGNESYGKIRINGVIVKRWFQPKLESPFSWEQTNLSFSQTRLRKGISHQQRNIRTSNLSLD 1063    
BLAST of XM_017402616.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4B4J0 ((pentatricopeptide repeat-containing protein MRL1, chloroplastic {ECO:0000313|RefSeq:XP_015893341.1}))

HSP 1 Score: 1109.36 bits (2868), Expect = 0.000e+0
Identity = 609/1134 (53.70%), Postives = 776/1134 (68.43%), Query Frame = 0
 
Query:    4 FSPKSQTLSLLSSSNSAFTSPCS-------LRRQFVGSGHIFRPPGNLC-YRKKWKKKKRIGFDIDASRGRLVVVKASISSQSIVVLIAVVAVSAITAAYLN-YRQRK-------PKQHELP------------------GPVDD-------QNTV-------HDKEDNAELASSS--HSRTAILSSLPVLQAQSNAHPVDLDLEEEEIVVKQNAQESKSSSDLALSETVSQLDAALVLPNHTEIKVDQVDKLRHEIES-------------SAATVSLNCVVSGVVELDKPNDETIDEARVDKYAGN--GDSVRRELHTFYEANQSH--VPPGENSDSVKPVHSHAS--SSETYSIYPLNRSYINGAKFSTLDILPTSGNHEGR-PHLGF-SAEVSFRKSKGSGKRHEFFSQNEREMIDQNGHRSSLISSYIKEKHINERRSRSERSTAYRRLLKEGRLVDCLELLEDMEKQNLLDMDKIYHAGFFRNCKTQRAVKEAFRFTKLIPNPTLSTFNMLLSVCASSQHLE-AFQVMQLVQEAELKADCKLYTTLISTCAKCGKVDSMFKVFHEMVNAGVEPNVHTYGALIDGCAKVGMVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMRAETIPVDPDHVTVGALIKACANAGQVVRAQEVYNMISKYNIRGTPELYTIAINSSSLTGDWEFACNVYNDMREKGVIPDEMFISAFIDVAGHSNKLESAFEILQKAKSDGMNVGIISYSSLMGACSNAKNWQMALELHEEIKDMNIKPTISTMNALITALCDGDQLQKALEVLSDMKKVGLCPNTITYSILLVACEKNDDLEVGLMLLSQAKKDGIAPNLVMCRCLIALCLRRFEKSCTLGEDVLSLNSGRPQIDSKWTSIVLRVYREAIIAGVVPTTEEFSQVLGCLRLPHDSSLRARLIENLGVIDSTSNNSNLCSLLDGFGEYDPRAFSLLEEAASLGILPSVSFKDIPIVVDVRNLQIHSAEVFLLTVLKSLKHRLAAGVKLPNIIILLPIDKIQVQSSKGDKMINLAGRTSRAVAALLRRLAIPYIGNESFGKIRMNGVVVKKWLQPKLTSPFRGKLSNLNSSQSHLGRNISLQQRNIRIGNLSLE 1065
            FS K Q L+L S ++ A TS          +R +F+G GH  RPPG L  YR++     ++G    ++R R    +AS++S S++V++AVV  SA++  Y N +R +K       P    LP                  G   D       +N +        DKE   +   S+  H    I +S+   Q+  + + V   + + +I    N++    S   A S  +S    +L LP+  E+   Q+++L+ +IES             S  ++ +N  ++G+ E     +E  +E +   Y     G+  R EL+ FYEAN+S       EN +  + + SHAS     T+S   L  + ++GA  S       S   EG+ P   + S     RK  G G  H   ++  R    QN H+   +   + E ++++R   SE+ +AY RLLK+GRL D +ELLEDME++ LLDM+K+YHA FF+ CK+Q+A+ EAFR+ KLI NPTLSTFNML+SVCASSQ+ E AFQV++L Q+A LKADCKLYTTLISTCAK GKVD+MFKVFHEMVNAGVEPNVHTYGALIDGCA+ G VAKAFGAYGIMRSKNVKPDRVVFNALI+ACGQSGAVDRAFDVL+EM  ET P+DPDH+T+GALIKAC NAGQV RAQEVY MI KY I+GTPE+YTIA+N  S TGDWEFA NVY+DM +KGVIPDEMF+SA IDVAGH+  L+ AFEILQ+  + G++ GI+SYSSLMGAC NAKNWQ ALEL+  +K M ++ T+ST+NALITALCDGDQL+KA+EVLS+MK +GLCP++I YS+L+VAC++ DDLE GLMLLSQAKKDGI  NL MCRC+I +CLRRFEK+CT+GE V S NSG+ Q+++KWTS  L VYRE I+AGV+PT E  SQVLGCLRLP+D+SL+ RLIEN+GV   TS  S L SL+DGF EYDPRAFSLLEEAAS+GI+  VSFK+ P+VVD R L+ H+AEV+LLTVL++LKHRLAAG KLPNI IL+P++K Q+ S KG+K INLAGR  +AVAALLRRL +PY GNES GKIR+NG+ +K+W QPKL SPF GK   L+S Q  LGR IS QQRNIR  NLSL+
Sbjct:    5 FSAKPQILTLFSYNHFASTSSSLSPSKLRSIRSEFLGCGHNLRPPGGLLRYRRR---NGKLGPYFYSTRFRF---RASLTSHSVLVVVAVVTFSAVSIFYWNRFRSKKNAKMAWGPPNFALPELGRNFKNQDMESQILGLGDFHDVKVHKMLENEIREKSHASEDKEAQLQYQKSAWVHEEALIANSV---QSPGSNNVVASSVGDIDIAFSNNSEVMDKSLSTAFS--ISATLQSLHLPH--ELTGLQLEELQEKIESDSGFDGEMGESKLSNGSIHVNNSLAGLHEHKNEKNELDEEGKTATYVNVLLGEPAREELYMFYEANRSKSMTKNLENLNGKRTLSSHASLLDGSTFS-SSLKNNILDGADVSAQVSPKISEYVEGKIPSASYKSGHPCSRKDSGKGNGHSRNNEETRHFT-QNNHKILPLLPDLNELNVDDRHHTSEQLSAYNRLLKDGRLTDSVELLEDMERRGLLDMNKVYHAKFFKICKSQKAINEAFRYFKLITNPTLSTFNMLMSVCASSQYSEGAFQVLRLAQDAGLKADCKLYTTLISTCAKSGKVDAMFKVFHEMVNAGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLSEMTTETQPIDPDHITIGALIKACMNAGQVDRAQEVYKMIHKYKIKGTPEVYTIAVNCCSQTGDWEFARNVYDDMTKKGVIPDEMFLSALIDVAGHAGNLDDAFEILQEVSNQGVHAGIMSYSSLMGACCNAKNWQKALELYGNLKSMKLELTVSTVNALITALCDGDQLEKAIEVLSEMKAIGLCPDSIAYSVLVVACDRKDDLEAGLMLLSQAKKDGIPLNLTMCRCIIGMCLRRFEKACTVGEPVFSFNSGQLQVENKWTSSALMVYRETIVAGVMPTIEVLSQVLGCLRLPYDASLKNRLIENMGVSADTSRPSKLYSLIDGFCEYDPRAFSLLEEAASIGIVQCVSFKESPVVVDARKLETHTAEVYLLTVLRALKHRLAAGSKLPNITILVPVEKTQIISPKGEKTINLAGRVGQAVAALLRRLRLPYQGNESHGKIRINGLAMKRWFQPKLASPFSGKPEELSSPQFRLGRGISHQQRNIRTANLSLD 1123    
Match NameStatsDescription
A0A6L5B8T5E-Value: 0.000e+0, PID: 80.34(Uncharacterized protein {ECO:0000313|EMBL:KAF1002... [more]
A0A5B7AR55E-Value: 0.000e+0, PID: 59.50PPR_long domain-containing protein {ECO:0000259|Pf... [more]
A0A5B7ARJ4E-Value: 0.000e+0, PID: 58.30PPR_long domain-containing protein {ECO:0000259|Pf... [more]
F6I157E-Value: 0.000e+0, PID: 54.39PPR_long domain-containing protein {ECO:0000259|Pf... [more]
A0A5N6QR99E-Value: 0.000e+0, PID: 54.97PPR_long domain-containing protein {ECO:0000259|Pf... [more]
A0A2N9IRS2E-Value: 0.000e+0, PID: 54.80PPR_long domain-containing protein {ECO:0000259|Pf... [more]
A0A2R6QQ48E-Value: 3.679e-1, PID: 64.74(Pentatricopeptide repeat-containing protein {ECO:... [more]
A0A2H5Q8K3E-Value: 0.000e+0, PID: 55.29(Uncharacterized protein {ECO:0000313|EMBL:GAY6097... [more]
A0A1S4B0F6E-Value: 0.000e+0, PID: 53.69(pentatricopeptide repeat-containing protein MRL1,... [more]
A0A6P4B4J0E-Value: 0.000e+0, PID: 53.70(pentatricopeptide repeat-containing protein MRL1,... [more]
back to top
Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
Loading content