XM_017402759.1

Resource Type: 
Polypeptide
Name: 
XM_017402759.1
Identifier: 
XM_017402759.1-protein
Sequence: 
MNTSSLWVGNLSSDVTESDLSRLFGKFGPIVKITLYSSKYFAFVHFKLPQ
DAKSAKDSLQATLLRSSPLKIDFAKPAKPCKSLWVGGISPSVTKEELEEQ
FRRFGEIQEFKFLRERNTAYVDYFVMEDATEALKNLNGLEVGGNMIRVDY
LRSQASKKEQPDFREARDTQSLNRSTGGSNPSWIPQHPLRNISAAYGDTR
PQHIQSPVGPKGDGQPSKVLWVSYPPSYPMDKQMLHNAMILFGEIEGITL
FPSGNYSLVEFRSVEEAKLAKEGLEGRLFSDPRILIMYSNSEAVPSNGQS
GFYSDVEGPRTDVLSNDVQGYPQIVPYSIAGNVPSRGVSGPGILGRPLGP
LGSFEPLQQLSLTKHQSLQDSNTNLLVGVSNRKRLSPSPGILSSPSQAVQ
PSMRPASGTWDAFEASQLQRESKRFRVGGLSALSDRSLEKMDEHYMILNQ
FNGHGQGGAIRGAAATVSGMNRSSTVEPRVLTGGTVQGHPEHDCIWRGVI
AKGGQHVCRARCFPLEKEFEFEIPEVVNCSARTGLDMLAKHYGDAVGFNI
IFFLPDSVEDFAPYTEFLRYLGAKNRAGVAKFDDGTTLFLVPPSDFLEST
LNIAGPERLYGVVLKFRSHVFGSTAEHTLQRNYIDRPVMPPQFDNRVMLQ
EERLMQTDYNRSMQGNPNTFSNSVAPSTNSVPGEAFPANSTSLSNAGVTL
TPELIATLASLLPAKGNTLGAQPLSGSSNPGPMQTPGATDRRHPHGWDHE
QTKMSEPSGHLINQAGYHYNSQAQIPLDHHYSLGQNLPNHAAQGVAANNR
IQDATFNMRNDEFSSRQITSSVSHPHAGQYLVSPQNNLQCKVETSQETRH
GYVQGINASAAYSASPLLPITNSVTLSHQVSNSTVSQHLSSNPNDGGNFG
LDSQKQIQPAQSHLGAVQGTLNEETDKNERYRSTLQFAANLLLQIQQNPG
SEAGQGPGNN
Sequence Length: 
960
Sequence Checksum: 
18f6c76ed971d2119cfe12a6ea6bdf03
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017402759.1, derives from mRNA, XM_017402759.1.
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Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017402759.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017402759.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z809 ((Putative Flowering time control protein FPA {ECO:0000313|EMBL:MPA40189.1}))

HSP 1 Score: 879.011 bits (2270), Expect = 0.000e+0
Identity = 503/986 (51.01%), Postives = 650/986 (65.92%), Query Frame = 0
 
Query:    1 MNTSSLWVGNLSSDVTESDLSRLFGKFGPIVKITLYSSKYFAFVHFKLPQDAKSAKDSLQATLLRSSPLKIDFAKPAKPCKSLWVGGISPSVTKEELEEQFRRFGEIQEFKFLRERNTAYVDYFVMEDATEALKNLNGLEVGGNMIRVDYLRSQASKKEQ-PDFREARDTQSLNRSTGGSNPSWIPQHPLRNIS--AAYGDTRPQHIQSPVGPKGDGQPSKVLWVSYPPSYPMDKQMLHNAMILFGEIEGITLFPSGNYSLVEFRSVEEAKLAKEGLEGRLFSDPRILIMYSNSEAVPSNGQSGFYSDVEGPRTDVLSNDVQGYPQ----------IVPYSIAGNVPSRGVSGPGILGRPLGPLGSFEPL----QQLSLTKHQSLQDSNTNLLVGVSNRKRLSPSPGILSSPSQAVQPSMRPASGTWDAFEASQLQRESKRFRVGGLSALSDRSL--EKMDEHYMILNQFNGHGQ--GGAIRGAAATVSGMNRSSTVEPRVLTGGTVQGHPEHDCIWRGVIAKGGQHVCRARCFPLEKEFEFEIPEVVNCSARTGLDMLAKHYGDAVGFNIIFFLPDSVEDFAPYTEFLRYLGAKNRAGVAKFDDGTTLFLVPPSDFLESTLNIAGPERLYGVVLKFRSHV----------FGSTAEHTLQRNYIDRPVMP-PQFDNRVMLQ-EERLMQTDYNRSMQGNPNTFSNS-VAPSTNSVPGEAFPA-NSTSLSNAGVTLTPELIATLASLLPAKGNTLG---AQPLSGSSNPGPMQTPGATDRRHPHGWDHEQTKMSEPSGHLINQAGYHYNSQAQ-IPLDHHYSLGQNLPNHAAQGVAANNRIQDATFN-MRNDEFSSRQITSSVSHPHAGQYLVSPQNNLQCKVETSQETR--HGYVQGINASAAYSASPLLPITNSVTLSHQVSNSTVSQHLSSNPNDGGNFGLDSQKQIQPAQSHL-GAVQGTLNEETDKNERYRSTLQFAANLLL 943
            M  ++LWVGNLSSDVT+SDL+ LFGK G +  IT Y+S+ +AF++FK  +DAK+AKD+LQ T++R +P+KI+F++PAKPCKSLWV GIS SV+KE+LEE+F +FG+I+EFKFLR+RNTA+VDYF +EDA++ALK++NG  +GG+ IRVD+LRSQ S++EQ PDF +AR+    +R  G  +  W+PQ  +RN S  A  G  R QH QS  G KGDGQP+ VLW+ YP S  +D+QMLHNAMILFGEIE I  FPS +YS VEFRSV+EA+ AKEGL+GRLF+DPRI IM+S+S+   S    GFY  ++GPR D+  N+    P           +VP +  G +P  G+ GP +  +P GP GSFEPL    +   L     L D+N N  +G  N +RLSP PG+L SPS  ++  +RP SG WD F+A+Q+QRESKR R+ G   + D S   +KMD+  + L+Q  G G    G   G  A V G NR S V+ R  TGGT+QGHP+HD IWRGVIAKGG  VC ARC P+EK  E +IPEVVNCSARTGLDML KHY +A GF+I+FFLPDS +DFA YTEFLRYLGAKNRAGVAKFDDGTTLFLVPPSDFL   LN+ GPERLYGVVLKF  H              +   +LQ  YIDR  +P  + +  VM Q EE+++Q DYNR +  +  T     V P+++S+P +   + N+ ++S AGVTLTPELIATLASLLPAK  +     +QP  GSS+  P   P     +      +E+ +  E +GHL  Q G  +N QAQ +P    Y    N+P+H+AQ V  +++IQD  FN ++    SSR + +       GQ+ VSPQ N Q + E  Q T+  +G   G +A  +Y +S     TN VTLS+QV +S VSQ  ++ P        +   Q+Q  QS L GA QGT   E DKN+RY+STLQFAANLLL
Sbjct:   29 MPLNNLWVGNLSSDVTDSDLANLFGKHGALDSITSYASRSYAFIYFKRMEDAKAAKDALQGTVVRGNPIKIEFSRPAKPCKSLWVSGISLSVSKEKLEEEFLKFGKIEEFKFLRDRNTAFVDYFKLEDASQALKSMNGKRIGGDQIRVDFLRSQPSRREQWPDFYDAREGHFPSRGMGPPDSPWMPQDFIRNSSDPAHSGSKRQQHSQSLGGRKGDGQPTNVLWIGYPSSVHIDEQMLHNAMILFGEIERIRSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRISIMFSSSDLARSKDYPGFYPGIKGPRPDMFLNEPPFRPSQLELLSHNRPMVPNNFPGPLPPSGILGPNMPMKPFGPQGSFEPLLSGPEFNDLAALHKLPDTNPNAPLGGPNWRRLSPGPGMLPSPSPGMKQPIRPVSGVWDVFDANQIQRESKRSRIDGPLPVYDSSFPSKKMDDRGLGLDQLYGLGSQVDGGASGPLAIVQGKNRLSPVDERFTTGGTIQGHPDHDYIWRGVIAKGGTPVCHARCVPIEKGIESDIPEVVNCSARTGLDMLTKHYAEADGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFDDGTTLFLVPPSDFLTKVLNVTGPERLYGVVLKFPLHARSSTSMQSQSQSQSQSLSLQSQYIDRQQIPSSRTEYSVMPQKEEKVLQMDYNRVLHEDTMTPQKQLVPPTSDSLPVQPVTSINTAAVSQAGVTLTPELIATLASLLPAKEMSSALESSQPPLGSSSLRPSLPPSTVPDKVVLPQSYER-QAPEQTGHL-QQLGNQFNPQAQLLPQLQTYPTVSNVPSHSAQWVTGSSQIQDPAFNLLQQVAVSSRPLANFAISSQGGQFAVSPQVNQQYQYEVPQNTQKSYGMAHGRDAFGSYVSSAYQQPTNPVTLSNQVHSSNVSQPDTAMPLATEKVISELPNQVQQLQSALHGAGQGTSEVEVDKNQRYQSTLQFAANLLL 1012    
BLAST of XM_017402759.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DHL5 ((Uncharacterized protein {ECO:0000313|EMBL:THG02291.1}))

HSP 1 Score: 844.343 bits (2180), Expect = 0.000e+0
Identity = 482/999 (48.25%), Postives = 643/999 (64.36%), Query Frame = 0
 
Query:    3 TSSLWVGNLSSDVTESDLSRLFGKFGPIVKITLYSSKYFAFVHFKLPQDAKSAKDSLQATLLRSSPLKIDFAKPAKPCKSLWVGGISPSVTKEELEEQFRRFGEIQEFKFLRERNTAYVDYFVMEDATEALKNLNGLEVGGNMIRVDYLRSQASKKEQ-PDFREARDTQSLNRSTGGSNPSWIPQHPLRNISAAY--GDTRPQHIQSPVGPKGDGQPSKVLWVSYPPSYPMDKQMLHNAMILFGEIEGITLFPSGNYSLVEFRSVEEAKLAKEGLEGRLFSDPRILIMYSNSEAVPSNGQSGFYSDVEGPRTDVLSNDVQGYPQ----------IVPYSIAGNVPSRGVSGPGILGRPLGPLGSFEPL----QQLSLTKHQSLQDSNTNLLVGVSNRKRLSPSPGILSSPSQAVQPSMRPASGTWDAFEASQLQRESKRFRVGGLSALSDRSL--EKMDEHYMILNQFNG---HGQGGAIRGAAATVSGMNRSSTVEPRVLTGGTVQGHPEHDCIWRGVIAKGGQHVCRARCFPLEKEFEFEIPEVVNCSARTGLDMLAKHYGDAVGFNIIFFLPDSVEDFAPYTEFLRYLGAKNRAGVAKFDDGTTLFLVPPSDFLESTLNIAGPERLYGVVLKFRSHVFGSTA--EHTLQRNYIDRPVMPPQFDNRVMLQEERLMQTDYNRSMQGNPNTFSNSVAPS-TNSVPGEAFPANSTSLSNAGVTLTPELIATLASLLPAKGNTLGA----QPLSGSSNPGPMQTPGATDRRHPHGWDHEQTKMSEPSGHLINQAGYHYNSQAQIPLDHHYSLGQNLPNHAAQGVAANNRIQDATFNMRNDEFSSRQITSSVSHPHAGQYLVSPQNNLQCKVETSQETRHGY--VQGINASAAYSASPLLPITNSVTLSHQVSNSTVSQHLSSNPNDGGNFGLDSQKQIQPAQSHLGAVQGTLNEETDKNERYRSTLQFAANLLL----------QIQQNPGSEAGQGPGNN 960
            +++LWVGNLS DVT+ DL  LF + G +  +T Y+S+ +AFV++K  +DAK+AK +LQ T+LR + LKI FA+PAKPCKSLWV GI PS+TKE LEE+F +FG+I+EFKFLR+RNTAYVDY  +EDA +ALK++NG ++G + IRVD+LRSQ S++EQ  D+ +AR+ Q L+R  G S+  W+PQ  +RN S     G  R  H QS  GPKGDGQPS +LW+ YPP   +D+QMLHNAMILFGEIE I  FP  +YSLVEFRSV+EA+ AKEGL+GRLF+D RI IMYS+S   PS    GF+  ++GPR D+  N+    P           +V  +++G  PS G+ GP +L RP GP G+FEPL    +   LT      D+N N L+G  N +RLSP+PG+L SPS  ++  +RP SG WD F+A+QLQRESKR R+  +  + D S   +KMD+  + L++ +G      GGA  G+   V   N  S  E R+ T G    HP+HD IWRGVIAKGG  VC ARC PL +  E EIP+VVNCSARTGLDML KHY DA+G++I+FFLPDS EDFA YTEFLRYLGAK RAGVAKF+DGTTLFLVPPSDFL + LN+AGPERLYGVVLKF  H   ST+    +   +Y+D   +P Q +   + +EE ++Q DY+ ++  +     N +APS T S+P +    N+ ++S AGV+LTPELIATLASLLPA   + G+    QPL  SS    M  P +T+     G   +  +    +GH ++Q  + +N Q Q+P    Y+ G N  +++  GV  N+++QD  F++     SSR +    +   +GQ  VSPQ + Q + E  Q T+ G+    G ++  +Y +S      NSV+LS+QV  S V+Q   +    G +    S + +Q   +  GA QGT   E DKN+RY+STLQFAANLLL          Q QQ P ++AGQG  N+
Sbjct:   25 SNNLWVGNLSPDVTDLDLMNLFSRHGSVDSVTPYASRSYAFVYYKRIEDAKAAKQALQGTILRGNSLKIQFARPAKPCKSLWVSGIGPSITKEILEEEFLKFGKIEEFKFLRDRNTAYVDYLRLEDAFQALKSMNGKQIGSDQIRVDFLRSQTSRREQGADYHDAREGQFLSRRMGPSDSPWMPQDTIRNYSEPMHSGSKRQLHSQSSGGPKGDGQPSNILWIGYPPPVHVDEQMLHNAMILFGEIESIRSFPLMHYSLVEFRSVDEARRAKEGLQGRLFNDSRISIMYSDSGLAPSQDYPGFHPGIKGPRPDMFFNEPPFRPAHMDMFHHNLPMVANTLSGPAPSSGILGPNMLMRPFGPQGNFEPLLSGPEFNDLTALHKRPDANPNGLMGGPNWRRLSPAPGMLPSPSSGMKRPIRPVSGAWDVFDANQLQRESKRARIDTVFPVYDSSFPSKKMDDQGLGLDRLHGLRPQVDGGA-SGSEVNVQEKNIFSPPEVRIKTVGNDHVHPDHDYIWRGVIAKGGTPVCCARCVPLGRGIESEIPDVVNCSARTGLDMLTKHYSDAIGYDIVFFLPDSEEDFASYTEFLRYLGAKGRAGVAKFEDGTTLFLVPPSDFLSNVLNVAGPERLYGVVLKFAQHSPSSTSMQPQSFPSHYMDGHQIPSQNEYSGLPREENVLQMDYSSALHEDSLPPRNQLAPSITASLPMQPASGNTAAVSQAGVSLTPELIATLASLLPATAKSSGSEAAQQPLGSSSMRPSM--PASTELE--RGLLQQGPQQ---TGHPLHQVEHQFNLQRQLPQVQTYATGLNTSSNSPLGVTGNSQVQDPAFHLPQGAVSSRPLNMLGNPSQSGQLSVSPQVDWQRQYEVPQITQTGFGMAHGTDSLGSYGSSIYQQPANSVSLSNQVHGSNVTQQPHTALPQGADISELSNQVLQLQPALYGASQGTSEVEVDKNQRYQSTLQFAANLLLQIQQKQQQQQQQQQQPSTQAGQGSVNH 1015    

HSP 2 Score: 56.6102 bits (135), Expect = 2.560e-5
Identity = 51/237 (21.52%), Postives = 88/237 (37.13%), Query Frame = 0
 
Query:   72 DFAKPAKPCKSLWVGGISPSVTKEELEEQFRRFGEIQEFKFLRERNTAYVDYFVMEDATEALKNLNGLEVGGNMIRVDYLRSQASKKEQPDFREARDTQSLNRSTGGSNPSWIPQHPLRNISAAYGDTRPQHIQSPVGPKGDGQPSKVLWVSYPPSYPMDKQMLHNAMILFGEIEGITLFPSGNYSLVEFRSVEEAKLAKEGLEGRLFSDPRILIMYSNSEAVPSNGQSGFYSDVEG 308
            D   P  P  +LWVG +SP VT  +L   F R G +        R+ A+V Y  +EDA  A + L G  + GN +++ +             R A+  +SL          W+                     S +GP                   + K++L    + FG+IE        N + V++  +E+A  A + + G+     +I + +  S+       + ++   EG
Sbjct:   17 DSEYPVPPSNNLWVGNLSPDVTDLDLMNLFSRHGSVDSVTPYASRSYAFVYYKRIEDAKAAKQALQGTILRGNSLKIQFA------------RPAKPCKSL----------WV---------------------SGIGPS------------------ITKEILEEEFLKFGKIEEFKFLRDRNTAYVDYLRLEDAFQALKSMNGKQIGSDQIRVDFLRSQTSRREQGADYHDAREG 192    
BLAST of XM_017402759.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GMR6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5942082.1}))

HSP 1 Score: 820.461 bits (2118), Expect = 0.000e+0
Identity = 472/970 (48.66%), Postives = 621/970 (64.02%), Query Frame = 0
 
Query:    3 TSSLWVGNLSSDVTESDLSRLFGKFGPIVKITLYSSKYFAFVHFKLPQDAKSAKDSLQATLLRSSPLKIDFAKPAKPCKSLWVGGISPSVTKEELEEQFRRFGEIQEFKFLRERNTAYVDYFVMEDATEALKNLNGLEVGGNMIRVDYLRSQASKKEQ-PDFREARDTQSLNRSTGGSNPSWIPQHPLRNISAAY--GDTRPQHIQSPVGPKGDGQPSKVLWVSYPPSYPMDKQMLHNAMILFGEIEGITLFPSGNYSLVEFRSVEEAKLAKEGLEGRLFSDPRILIMYSNSEAVPSNGQSGFYSDVEGPRTDVLSNDVQGYPQ----------IVPYSIAGNVPSRGVSGPGILGRPLGPLGSFEPLQQLSLTKHQSLQDSNTNLLVGVSNRKRLSPSPGILSSPSQAVQPSMRPASGTWDAFEASQLQRESKRFRVGGLSALSDRSL--EKMDEHYMILNQFNG---HGQGGAIRGAAATVSGMNRSSTVEPRVLTGGTVQGHPEHDCIWRGVIAKGGQHVCRARCFPLEKEFEFEIPEVVNCSARTGLDMLAKHYGDAVGFNIIFFLPDSVEDFAPYTEFLRYLGAKNRAGVAKFDDGTTLFLVPPSDFLESTLNIAGPERLYGVVLKFRSHVFGSTA--EHTLQRNYIDRPVMPPQFDNRVMLQEERLMQTDYNRSMQGNPNTFSNSVAPSTN-SVPGEAFPANSTSLSNAGVTLTPELIATLASLLPAKGNTLGA----QPLSGSSNPGPMQTPGATDRRHPHGWDHEQTKMSEPSGHLINQAGYHYNSQAQIPLDHHYSLGQNLPNHAAQGVAANNRIQDATFNMRNDEFSSRQITSSVSHPHAGQYLVSPQNNLQCKVETSQETRHGY--VQGINASAAYSASPLLPITNSVTLSHQVSNSTVSQHLSSNPNDGGNFG-LDSQ-KQIQPAQSHLGAVQGTLNEETDKNERYRSTLQFAANLLL 943
            +++LWVGNLS DVT+ DL  LF + G +  +T Y+S+ +AFV++K  +DAK+AK +LQ T+LR + LKI FA+PAKPCKSLWV GI PS+TKE LEE+F +FG+I+EFKFLR+RNT YVDY  +EDA +ALK++NG ++G + IRVD+LRSQ S++EQ  D+ +AR+ Q L+R  G S+  W+PQ  +RN S     G  R  H QS  GPKGDGQPS +LW+ YPP   +D+QMLHNAMILFGEIE I  FP  +YSLVEFRSV+EA+ AKEGL+GRLF+D RI IMYS+S   PS    GF++ ++GPR DV  N+    P           +V  +++G  PS   SGP   G                LT      D+N N L+G  N +RLSP+PG+L SPS  ++  +RP SG WD F+A+QLQRESKR R+  +  + D S   +KMD+  + L++ +G      GGA  G+   V   N  S  E R+ T G    HP+HD IWRGVIAKGG  VCRARC PL +  E EIP+VVNCSARTGLDML KHY DA+G++I+FFLPDS EDFA YTEFLRYLGAK RAGVAKF+DGTTLFLVPPSDFL + LN+AGPERLYGVVLKF  H   ST+    +   +Y+D   +P Q +   + +EE ++Q DY+  +  +     N +APST  S+P +    N+T++S AGV+LTPELIATLASLLPA   + G+    QPL GSS+  P         R       EQT      GH ++Q  + +N Q Q+P    Y+ G N  +++  GV  N+++QD  F++     SSR +    +   +GQ  VSPQ + Q + E  Q T+ G+    G ++  +Y +S      NSV+LS+QV  S V+Q   +    G +   L +Q +Q+QPA    GA QGT   E DKN+RY+STLQFAANLLL
Sbjct:   25 SNNLWVGNLSPDVTDLDLMNLFSRHGSVDSVTPYASRSYAFVYYKRIEDAKAAKQALQGTILRGNSLKIQFARPAKPCKSLWVSGIGPSITKEILEEEFLKFGKIEEFKFLRDRNTTYVDYLRLEDAFQALKSMNGKQIGSDQIRVDFLRSQTSRREQGADYHDAREGQFLSRRMGPSDSPWMPQDTIRNYSEPMHSGSKRQLHSQSSGGPKGDGQPSNILWIGYPPPVHVDEQMLHNAMILFGEIESIRSFPLMHYSLVEFRSVDEARRAKEGLQGRLFNDSRISIMYSDSGLAPSQDYPGFHAGIKGPRPDVFFNEPPFQPAHMDMFHHNLPMVANTLSGPAPS---SGPEFNG----------------LTALHKRPDANPNGLMGGPNWRRLSPAPGMLPSPSSGMKRPIRPVSGAWDVFDANQLQRESKRARIDTVFPVYDSSFPSKKMDDQGLGLDRLHGLRPQVDGGA-SGSEVNVQEKNIFSPPEVRIKTVGNDHVHPDHDYIWRGVIAKGGTPVCRARCVPLGRGIESEIPDVVNCSARTGLDMLTKHYSDAIGYDIVFFLPDSEEDFASYTEFLRYLGAKGRAGVAKFEDGTTLFLVPPSDFLSNVLNVAGPERLYGVVLKFAQHSPSSTSMQPQSFLSHYMDGHQIPSQNEYSGLPREENVLQMDYSSVLHEDSLPPRNQLAPSTTASLPMQPASGNTTAMSQAGVSLTPELIATLASLLPATAKSSGSEAAQQPL-GSSSMRPSMPASTELERGLLQQGPEQT------GHPLHQVEHQFNLQRQLPQVQTYATGLNTSSNSPLGVTGNSQVQDPAFHLPQGAVSSRPLNMLGNPSQSGQLSVSPQVDWQRQYEVPQITQTGFGMAHGTDSLGSYGSSIYQQPANSVSLSNQVHGSNVTQQPHTALPQGADISELSNQVQQLQPAL--YGASQGTSEVEVDKNQRYQSTLQFAANLLL 965    

HSP 2 Score: 56.9954 bits (136), Expect = 2.076e-5
Identity = 51/237 (21.52%), Postives = 88/237 (37.13%), Query Frame = 0
 
Query:   72 DFAKPAKPCKSLWVGGISPSVTKEELEEQFRRFGEIQEFKFLRERNTAYVDYFVMEDATEALKNLNGLEVGGNMIRVDYLRSQASKKEQPDFREARDTQSLNRSTGGSNPSWIPQHPLRNISAAYGDTRPQHIQSPVGPKGDGQPSKVLWVSYPPSYPMDKQMLHNAMILFGEIEGITLFPSGNYSLVEFRSVEEAKLAKEGLEGRLFSDPRILIMYSNSEAVPSNGQSGFYSDVEG 308
            D   P  P  +LWVG +SP VT  +L   F R G +        R+ A+V Y  +EDA  A + L G  + GN +++ +             R A+  +SL          W+                     S +GP                   + K++L    + FG+IE        N + V++  +E+A  A + + G+     +I + +  S+       + ++   EG
Sbjct:   17 DSEYPVPPSNNLWVGNLSPDVTDLDLMNLFSRHGSVDSVTPYASRSYAFVYYKRIEDAKAAKQALQGTILRGNSLKIQFA------------RPAKPCKSL----------WV---------------------SGIGPS------------------ITKEILEEEFLKFGKIEEFKFLRDRNTTYVDYLRLEDAFQALKSMNGKQIGSDQIRVDFLRSQTSRREQGADYHDAREG 192    
BLAST of XM_017402759.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PXN0 ((Flowering time control protein like {ECO:0000313|EMBL:PSR98302.1}))

HSP 1 Score: 801.201 bits (2068), Expect = 0.000e+0
Identity = 473/975 (48.51%), Postives = 611/975 (62.67%), Query Frame = 0
 
Query:    3 TSSLWVGNLSSDVTESDLSRLFGKFGPIVKITLYSSKYFAFVHFKLPQDAKSAKDSLQATLLRSSPLKIDFAKPAKPCKSLWVGGISPSVTKEELEEQFRRFGEIQEFKFLRERNTAYVDYFVMEDATEALKNLNGLEVGGNMIRVDYLRSQASKKEQ-PDFREARDTQSLNRSTGGSNPSWIPQHPLRNISAAYGDTRPQHIQSPVGPKGDGQPSKVLWVSYPPSYPMDKQMLHNAMILFGEIEGITLFPSGNYSLVEFRSVEEAKLAKEGLEGRLFSDPRILIMYSNSEAVPSNGQSGFYSDVEGPRTDVLSN---------DVQGYPQI-VPYSIAGNVPSRGVSGPGILGRPLGPLGSFEPL----QQLSLTKHQSLQDSNTNLLVGVSNRKRLSPSPGILSSPSQAVQPSMRP-ASGTWDAFEASQLQRESKRFRVGGLSALSDRSL--EKMDEHYMILNQFNGHGQ--GGAIRGAAATVSGMNRSSTVEPRVLTGGTVQGHPEHDCIWRGVIAKGGQHVCRARCFPLEKEFEFEIPEVVNCSARTGLDMLAKHYGDAVGFNIIFFLPDSVEDFAPYTEFLRYLGAKNRAGVAKFDDGTTLFLVPPSDFLESTLNIAGPERLYGVVLKFRSHVFGSTA--EHTLQRNYIDRPVMPPQFDNRVMLQEERLMQTDYNRSMQGNPNTFSNSVAPS-TNSVPGEAFPA-NSTSLSNAGVTLTPELIATLASLLPAKGNTLGAQPLSGSSNPGPMQTP-GATDRRH----PHGWDHEQTKMSEPSGHLINQAGYHYN-SQAQIPLDHHYSLGQNLPNHAAQGVAANNRIQDATFNMRNDEFSSRQITSSVSHP-HAGQYLVSPQNNLQCKVETSQETRHGY--VQGINASAAYSASPLLPITNSVTLSHQVSNSTVSQHLSSNPNDGGNFGLDSQKQIQPAQSHL-GAVQGTLNEETDKNERYRSTLQFAANLLL 943
            +++LWVGNLS+DVT+SDL  LF K+G +  IT Y+S+ +AFVHFK  + AK+A ++L  T LR + +KI+FAKPAKPCKSLWV GISPSVTKE LE++F +FG+I+EFKFLRERNTAY+DYF +EDA++ALK++NG  +GG+ IRVD+LRS  S++E   D+R+AR+ Q +                              H +S  G KGDGQPS +LW+ YPPS  MD+QMLHNAMILFGEIE I  FPS +YS VEFRSV+EA+ AKEGL+GRLF+DPRI I+YS+S    S     FY  V+GPR DVL +         D+  + ++ VP +++   PS GV GP  L RP GP GSFEPL    +   LT      D+N N L+G  N +R SP+PGI  SPSQ  +   RP +SG WD F+A+QLQRESKR R+  +    D +   +KMD+H   L+Q  G G    G+  G    V   N     E R  T G  QG+P+HD IWRG+IAKGG  VCRARC P+ +  EFEIPEVVNCSARTGLDML KHYGDAVG+++IFFLPDS EDFA YTEFLRYLGAK+RAGVAKFDDGTTLFLVPPSDFL   L + GPERLYGVVLKF  H   +TA    + Q  +ID   MP   +   M QE++ +Q DY+R ++ +    SN +APS T+S+  +  P+ N+ +LS AG+ LTPELIATLASLLPA   + GA+    S     M+ P   T   H       W H+++   E + H ++Q    YN  Q Q+     Y  G +  +  A GV  ++++QD  F +      S    S+   P  +GQ  V  Q NLQ + E  Q T+ G+    G +   ++ +S      NSVT+S+QV  S V+Q L++ P        +   Q+Q  QS + GA QGT   E DKN+RY+STLQFAANLL 
Sbjct:   24 SNNLWVGNLSTDVTDSDLMSLFSKYGAVDSITAYASRSYAFVHFKRVEHAKAALEALHGTYLRGNSMKIEFAKPAKPCKSLWVSGISPSVTKEVLEKEFLKFGKIEEFKFLRERNTAYIDYFRLEDASQALKSMNGKRIGGDQIRVDFLRSHTSRREHVTDYRDAREGQKV------------------------------HSESSGGQKGDGQPSNILWIGYPPSVHMDEQMLHNAMILFGEIERIRSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRISILYSSSGPTRSKDYPAFYPRVKGPRPDVLFDEPPFQLAHIDMFNHNRLMVPNALSRPAPSDGVLGPNRLMRPFGPQGSFEPLLCGPEFNDLTVLNKRLDANPNSLIGGPNWRRSSPAPGIFPSPSQGAK---RPVSSGAWDLFDANQLQRESKRSRMDNVLPAYDSAFPSKKMDDHGSGLDQLYGLGPQVDGSPSGPFNNVQEKNLYVPTETRKTTRGMGQGYPDHDYIWRGIIAKGGTPVCRARCVPVGEGVEFEIPEVVNCSARTGLDMLTKHYGDAVGYSVIFFLPDSEEDFASYTEFLRYLGAKDRAGVAKFDDGTTLFLVPPSDFLYKVLKVEGPERLYGVVLKFPQHAPSNTAVQPQSFQSRHIDGQQMPSH-EYSGMHQEQKALQLDYSRLLREDSLPPSNQLAPSTTDSLSMQPAPSVNTAALSQAGIALTPELIATLASLLPASSKSSGAETAQSSVGASSMRPPLPPTTELHRELLQRDWTHDRSH-PEQTAHPLHQVENQYNPHQHQLSQLQTYPTGLSTSSDYATGVTVHSQVQDLAFQLPQQGAVSSMSLSNFGIPSQSGQMAVPHQINLQHQYEVPQNTQKGFGIAHGTDPLGSHGSSFYQHSGNSVTISNQVHGSDVTQPLTAMPLAADKGYSELPNQVQQLQSTIYGANQGTSEVEVDKNKRYQSTLQFAANLLF 963    
BLAST of XM_017402759.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RY40 ((Flowering time control protein like {ECO:0000313|EMBL:PSS34936.1}))

HSP 1 Score: 794.267 bits (2050), Expect = 0.000e+0
Identity = 472/975 (48.41%), Postives = 609/975 (62.46%), Query Frame = 0
 
Query:    3 TSSLWVGNLSSDVTESDLSRLFGKFGPIVKITLYSSKYFAFVHFKLPQDAKSAKDSLQATLLRSSPLKIDFAKPAKPCKSLWVGGISPSVTKEELEEQFRRFGEIQEFKFLRERNTAYVDYFVMEDATEALKNLNGLEVGGNMIRVDYLRSQASKKEQ-PDFREARDTQSLNRSTGGSNPSWIPQHPLRNISAAYGDTRPQHIQSPVGPKGDGQPSKVLWVSYPPSYPMDKQMLHNAMILFGEIEGITLFPSGNYSLVEFRSVEEAKLAKEGLEGRLFSDPRILIMYSNSEAVPSNGQSGFYSDVEGPRTDVLSNDVQGYPQ----------IVPYSIAGNVPSRGVSGPGILGRPLGPLGSFEPL----QQLSLTKHQSLQDSNTNLLVGVSNRKRLSPSPGILSSPSQAVQPSMRP-ASGTWDAFEASQLQRESKRFRVGGLSALSDRS--LEKMDEHYMILNQFNGHGQ--GGAIRGAAATVSGMNRSSTVEPRVLTGGTVQGHPEHDCIWRGVIAKGGQHVCRARCFPLEKEFEFEIPEVVNCSARTGLDMLAKHYGDAVGFNIIFFLPDSVEDFAPYTEFLRYLGAKNRAGVAKFDDGTTLFLVPPSDFLESTLNIAGPERLYGVVLKFRSHVFGST--AEHTLQRNYIDRPVMPPQFDNRVMLQEERLMQTDYNRSMQGNPNTFSNSVA-PSTNSVPGEAFPA-NSTSLSNAGVTLTPELIATLASLLPAKGNTLG---AQPLSGSSNPGPMQTPGATDRRH--PHGWDHEQTKMSEPSGHLINQAGYHYN-SQAQIPLDHHYSLGQNLPNHAAQGVAANNRIQDATFNMRNDEFSSRQITSSVSHP-HAGQYLVSPQNNLQCKVETSQETRHGY--VQGINASAAYSASPLLPITNSVTLSHQVSNSTVSQHLSSNPNDGGNFGLDSQKQIQPAQSHL-GAVQGTLNEETDKNERYRSTLQFAANLLL 943
            +++LWVGNLS+DVT+SDL  LF K+G +  IT Y+S+ +AFV+FK  + AK+A ++L  T LR + +KI+FAKPAKPCKSLWV GISPSVTKE LE++F +FG+I+EFKF+RERNTAY+DYF +EDA++ALK++NG  +GG+ IRVD+LRS  S++E   D+R++R+ Q +                              H +S  G KGDGQPS +LW+ YPPS  MD+QMLHNAMILFGEIE I  FPS +YS VEFRSV+EA+ AKEGLEGRLF+DPRI IMYS+     S     FY  V+GPR DVL ++    P           +VP +++   PS GV GP  L RP GP GSFEPL    +   L+      D+N N L+G  N +R SP+PGI  SPSQ  +   RP +SG WD F+A+QLQRESKR R+  +    D +  L+KMD+H   L+Q  G G    G+  G        N     E R+ T G  QG+P+HD IWRGVIAKGG  VCRARC P+ +  EFEIPEVVNCSARTGLDML KHY DAVGF++IFFLPDS EDFA YTEFLRYLGAK+RAGVAKFDDGTTLFLVPPSDFL   L + GPERLYGVVLKF  H   +T     ++Q  YID   MP   +   M QEE+ +Q DY+R ++ +    S  +A PST+S+  +  P+ N+ ++S AG+ LTPELIATLASLLPA   + G   AQP  G+S   P   P     R      W H+++   E + H ++Q    YN  Q Q+     Y    +  +  A GV  ++++QD  F +     SS +  S+   P  +GQ  V  Q N Q + E  Q T+ G+    G ++  ++ +S      NSVT S+QV  S V+Q L++ P        +   Q+Q  QS + GA QGT   E DKN+RY+STLQFAANLLL
Sbjct:   24 SNNLWVGNLSTDVTDSDLMSLFSKYGAVDSITAYASRSYAFVYFKRVEHAKAALEALHGTYLRGNSMKIEFAKPAKPCKSLWVSGISPSVTKEVLEKEFLKFGKIEEFKFIRERNTAYIDYFRLEDASQALKSMNGKRIGGDNIRVDFLRSHTSRREHVTDYRDSREGQKV------------------------------HSESSGGQKGDGQPSNILWIGYPPSVHMDEQMLHNAMILFGEIERIRSFPSKHYSFVEFRSVDEARRAKEGLEGRLFNDPRISIMYSSIGPTRSKDYPVFYPGVKGPRPDVLFDEPPFQPAHIDMFNHNRPLVPNALSRPAPSGGVLGPNRLMRPFGPQGSFEPLLSGPEFNDLSALNKRLDANPNSLIGGPNWRRSSPAPGIFPSPSQVAK---RPVSSGAWDVFDANQLQRESKRSRMDTVLPAYDSAFPLKKMDDHGPGLDQLYGLGPQVDGSPSGPFNNFQEKNLYGPAETRMTTRGMGQGYPDHDYIWRGVIAKGGTPVCRARCVPVGEGIEFEIPEVVNCSARTGLDMLTKHYADAVGFSVIFFLPDSEEDFASYTEFLRYLGAKDRAGVAKFDDGTTLFLVPPSDFLYKVLKVEGPERLYGVVLKFPQHAPSNTYVQPQSIQSRYIDGQQMPSH-EYSGMHQEEKALQMDYSRLLREDSLPPSKQLAPPSTDSISMQPAPSVNTAAMSQAGIALTPELIATLASLLPASSKSSGAETAQPSVGTSTTRPPLPPTTELHREVLQRDWTHDRSH-PEQTAHPVHQVENQYNPHQHQLSQLQTYPTALSTSSDYAMGVTVHSQVQDPAFQLPQQGTSSSRPLSNFGIPSQSGQMEVPHQVNRQHQYEVPQNTQKGFGIAHGTDSLGSHGSSFYQHSGNSVTFSNQVHGSDVTQPLTAMPLTADKGYSEVPNQVQQLQSTVYGANQGTSEVEVDKNQRYQSTLQFAANLLL 963    
BLAST of XM_017402759.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DCN7 ((RNA binding protein {ECO:0000313|EMBL:GFS32303.1}))

HSP 1 Score: 781.556 bits (2017), Expect = 0.000e+0
Identity = 463/977 (47.39%), Postives = 603/977 (61.72%), Query Frame = 0
 
Query:    3 TSSLWVGNLSSDVTESDLSRLFGKFGPIVKITLYSSKYFAFVHFKLPQDAKSAKDSLQATLLRSSPLKIDFAKPAKPCKSLWVGGISPSVTKEELEEQFRRFGEIQEFKFLRERNTAYVDYFVMEDATEALKNLNGLEVGGNMIRVDYLRSQASKKEQPDFREARDTQSLNRSTGGSNPSWIPQHPLRNISAAYGDTRPQHIQSPVGPKGDGQPSKVLWVSYPPSYPMDKQMLHNAMILFGEIEGITLFPSGNYSLVEFRSVEEAKLAKEGLEGRLFSDPRILIMYSNSEAVPSNGQSGFYSDVEGPRTDVLSN---------DVQGYPQI-VPYSIAGNVPSRGVSGPGILGRPLGPLGSFEPL----QQLSLTKHQSLQDSNTNLLVGVSNRKRLSPSPGILSSPSQAVQPSMRP-ASGTWDAFEASQLQRESKRFRVGGLSALSDRSL--EKMDEHYMILNQFNGHGQ--GGAIRGAAATVSGMNRSSTVEPRVLTGGTVQGHPEHDCIWRGVIAKGGQHVCRARCFPLEKEFEFEIPEVVNCSARTGLDMLAKHYGDAVGFNIIFFLPDSVEDFAPYTEFLRYLGAKNRAGVAKFDDGTTLFLVPPSDFLESTLNIAGPERLYGVVLKFRSHVFGSTA--EHTLQRNYIDRPVMPPQFDNRVMLQEERLMQTDYNRSMQGNPNTFSNSVA-PSTNSVPGEAFPA-NSTSLSNAGVTLTPELIATLASLLPAKGNTLGAQPLSGSSNPGPMQTP-GATDRRH----PHGWDHEQTKMSEPSGHLINQAGYHYN-SQAQIPLDHHYSLGQNLPNHAAQGVAANNRIQDATFNM-RNDEFSSRQITSSVSHPHAGQYLVSPQNNLQCKVETSQETRHGY-----VQGINASAAYSASPLLPITNSVTLSHQVSNSTVSQHLSSNPNDGGNFGLDSQKQIQPAQSHL-GAVQGTLNEETDKNERYRSTLQFAANLLL 943
            +++LWVGNLS+DVT+SDL  LF K+G +  IT Y+S+ +AFVHFK  + AK+A ++L  T LR + +KI+FAKPAKPCKSLW  GISPSVTKE LE++F +FG+I+EFKFLRERNTAY+DYF +EDA++ALK++NG  +GG+ IRVD+LRS  S++                                            H +S  G KGDGQPS +LW+ YPPS  MD+QMLHNAMILFGEIE I  FPS +YS VEFRSV+EA+ AKEGL+GRLF+DPRI I+YS+S    S     FY  V+GPR DVL +         D+  + ++ VP +++   PS GV GP  L RP GP GSFEPL    +   LT      D+N N L+G  N +R SP+PGI  SPSQ  +   RP +SG WD F+A+QLQRESKR R+  +    D S   +KMD+H   L+Q  G G    G+  G    V   N     E R  T G  QG+P+HD IWRG+IAKGG  VCRARC P+ +  EFEIPEVVNCSARTGLDML KHY DAVG+++IFFLPDS EDFA YTEFLRYLGAK+RAGVAKFDDGTTLFLVPPSDFL   L + GPERLYGVVLKF  H   +TA    + Q  +ID   MP   +   M QE++ +Q DY+R ++ +    SN +A P+T+S+  +  P+ N++++S AG+ LTPELIATLASLLPA   + GA+    S     M+ P   T   H       W H+++   E + H ++Q    YN  Q Q+     Y  G +  +  A GV  ++++QD  F + +    SSR +++      +GQ  V  Q NLQ + E  Q T+ G+        + +  ++ +S      NSVT+S+QV  S V+Q L++ P        +   Q+Q  QS + GA QGT   E DKN+RY+STLQFAANLL 
Sbjct:   24 SNNLWVGNLSTDVTDSDLMSLFSKYGAVDSITAYASRSYAFVHFKRVEHAKAALEALHGTYLRGNSMKIEFAKPAKPCKSLWASGISPSVTKEVLEKEFLKFGKIEEFKFLRERNTAYIDYFRLEDASQALKSMNGKRIGGDQIRVDFLRSHTSRR--------------------------------------------HSESSGGQKGDGQPSNILWIGYPPSVHMDEQMLHNAMILFGEIERIRSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRISILYSSSGPTRSKDYPAFYPGVKGPRLDVLFDEPPFQLAHIDMFNHNRLMVPNALSRPAPSGGVLGPNRLMRPFGPQGSFEPLLSGPEFNDLTVLNKRLDANPNSLIGGPNWRRSSPAPGIFPSPSQGAK---RPVSSGAWDLFDANQLQRESKRSRMDNILPAYDSSFPSKKMDDHGPRLDQLYGLGPQVDGSPSGPFNNVQEKNLYVPTETRKTTRGMGQGYPDHDYIWRGIIAKGGTPVCRARCVPVGEGVEFEIPEVVNCSARTGLDMLTKHYDDAVGYSVIFFLPDSEEDFASYTEFLRYLGAKDRAGVAKFDDGTTLFLVPPSDFLYKVLKVEGPERLYGVVLKFPQHAPSNTAVQPQSFQSRHIDGQQMPSH-EYSGMHQEQKALQMDYSRLLREDSLPPSNQLAPPTTDSLSMQPAPSVNTSAMSQAGIALTPELIATLASLLPASSKSSGAETAQSSVGASSMRPPLPPTTELHRELLQRDWTHDRSH-PEQTAHPLHQVENQYNPHQHQLSQLQTYPTGLSTSSDYATGVTVHSQVQDLEFQLPQQGAVSSRPLSNFGIPSQSGQMAVPHQINLQHQYEVPQNTQKGFGMAHGTDSLGSHGSHGSSFYQHSGNSVTISNQVHGSDVTQPLTAMPLAADKGYSELPNQVQQLQSTIYGANQGTSEVEVDKNKRYQSTLQFAANLLF 951    
BLAST of XM_017402759.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P3Z045 ((flowering time control protein FPA {ECO:0000313|RefSeq:XP_015867588.1}))

HSP 1 Score: 770.385 bits (1988), Expect = 0.000e+0
Identity = 470/1002 (46.91%), Postives = 630/1002 (62.87%), Query Frame = 0
 
Query:    3 TSSLWVGNLSSDVTESDLSRLFGKFGPIVKITLYSSKYFAFVHFKLPQDAKSAKDSLQATLLRSSPLKIDFAKPAKPCKSLWVGGISPSVTKEELEEQFRRFGEIQEFKFLRERNTAYVDYFVMEDATEALKNLNGLEVGGNMIRVDYLRSQASKKEQPDFREARDTQSLNRSTGGSNPSWIPQHPLRNISAAYGDTRPQHIQSPVGPKGDGQPSKVLWVSYPPSYPMDKQMLHNAMILFGEIEGITLFPSGNYSLVEFRSVEEAKLAKEGLEGRLFSDPRILIMYSNSEAVPSNGQSGFYSDVEGPRTDVLSNDVQGYP----------QIVPYSIAGNVPSRGVSGPGILGRPLGPLGSFEPLQQLS----LTKHQSLQDSNTNLLVGVSNRKRLSPSPGILSSPSQAVQPSMRPASGTWDAFEASQLQRESKRFRVGGLSALSDRS--LEKMDEHYMILNQFNGHGQ--GGAIRGAAATVSGMNRSSTVEPRVLTGGTVQGHPEHDCIWRGVIAKGGQHVCRARCFPLEKEFEFEIPEVVNCSARTGLDMLAKHYGDAVGFNIIFFLPDSVEDFAPYTEFLRYLGAKNRAGVAKFDDGTTLFLVPPSDFLESTLNIAGPERLYGVVLKFRSHVFGSTAEHTLQR------NYIDRPVMPP-QFDNRVM-LQEERLMQTDYNRSMQGNPNTFSNSVAPSTN------SVPGEAFPANSTSLSNAGVTLTPELIATLASLLPAKGNTL---GAQPLSGSSNPGPMQTPGATDRRHPH-GWDHEQTKMSEPSGHLINQAGYHYNSQAQ-IPLDHHYSLGQNLPNHAAQGVAANNRIQDATFNM-RNDEFSSRQITSSVSHPHAGQYLVSPQNNLQCKVETSQETRHGY--VQGINASAAYSASPLLPITNSVTLSHQVSNSTVSQHLSSNPNDGGNFGLDSQKQIQPAQSH-LGAVQGTLNEETDKNERYRSTLQFAANLLLQIQQNP-----GSEAGQGPG 958
            +++LWVGNL+SDVT+SDL  LF ++G +  +T YSS+ +AF+ FK  +DAK+AK++LQ TLLR +P+KI+FA+PAKPCK LWVGGISPSV+KEELEE+F +FG+I++FKFLR+RNTA+++Y  +EDA++A++ +NG  +GG+ IRVD+LRSQ SK+EQ  + ++RD Q   RS G ++                G  R Q+ Q+    KGDGQPS VLW+ YPPS  +D+QMLHNAMILFGEIE I  FPS +YS VEFRSV+EA+ AKEGL+GRLF+DPRI IM+S+S+  P    S  Y+  +GPR D+L N+    P           I+     G++ S GV GP +  RP G  G FEPL   S    LT   + Q+ N+  L+G + R+   P+PG+LSSP+  ++   R AS  WD  + +Q QR++KR R+ G  ++ D S  L K+D++ + L Q  G GQ   G++ G+ A V G +  S V  R+  GG   GHP++D +WRG+IAKGG  VC ARC P+ K    E+PE++NCSARTGLDML KHY +A+GF+++FFLPDS +DFA YTEFLRYLGAKNRAGVAKFDDG TLFLVPPSDFL   L +AGPERLYGVVLKF   V GS +             YI+R  +PP Q +  V+  +EER++Q DY+R +   P   S    P  N      SV  +  P ++ ++S AGV+LTPELIATLASLLPA   T    GA+P SGSS   P     A  +  P  GW  +  + S+ +GH + Q G  +NSQ Q +     Y    N+P H+AQ V  N + QD+   + +    SSR  +S   +  AGQ   S Q+  Q +V+    T+ GY  V G +AS  Y++    P+ NS+ +  Q  N+   Q  +  P  G     D   Q+Q  QS  LGA Q T   E DKN+RY+STLQFAA+LLLQIQQ       G++AG+G G
Sbjct:   19 SNNLWVGNLASDVTDSDLMELFAQYGALDSVTSYSSRSYAFLFFKRMEDAKAAKEALQGTLLRGNPIKIEFARPAKPCKHLWVGGISPSVSKEELEEEFLKFGKIEDFKFLRDRNTAFIEYLRLEDASQAMRIMNGKRLGGDQIRVDFLRSQPSKREQ--WPDSRDGQFQGRSLGPAD-------------LHTGLKRQQYSQALGLRKGDGQPSNVLWIGYPPSVQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSDLAPGKEYSAIYTGGKGPRPDMLFNEHTFRPLQVDAFGPNRSIISSGFPGSLSSGGVLGPNVPVRPFGSQGRFEPLLSGSELNDLTNLPNYQEGNSKNLIGPNWRRPSPPTPGMLSSPAPNIRTHPRSASSAWDVLDVNQFQRDAKRSRIDGPLSIDDTSFPLRKIDDNVLGLEQSYGLGQVADGSVSGSFANVQGRSHLSPVGGRISAGGPALGHPDNDFVWRGMIAKGGTPVCHARCVPIGKGIGAELPEIINCSARTGLDMLTKHYAEAIGFDVVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFDDGMTLFLVPPSDFLTKVLKVAGPERLYGVVLKFPQQVPGSGSMQQQSHLPIPSSQYIERQHIPPSQAEYGVIPSKEERVLQMDYSRVLPEEPKLPSKPHFPPANDSSGLQSVAHDYAPNSAAAMSQAGVSLTPELIATLASLLPANAQTSAPEGAKP-SGSSTITPTYPSVAPYKVTPSPGWKQDHHQTSDHTGHALQQLGSQFNSQGQNLSQFQPYPSVSNVPGHSAQSVLGNTQFQDSAVGLSQQATVSSRPPSSFPVYTQAGQVAAS-QHLTQYQVDGPSATQKGYGIVHGTDASGLYNSPVSQPLNNSMAIPSQSYNANAVQSQTLMPLPGDKVNADVPNQVQQLQSALLGAGQSTSEGEVDKNQRYQSTLQFAASLLLQIQQQQQQQQVGTQAGRGSG 1003    
BLAST of XM_017402759.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0E840 ((RNA binding protein {ECO:0000313|EMBL:GFY82643.1}))

HSP 1 Score: 766.533 bits (1978), Expect = 0.000e+0
Identity = 460/969 (47.47%), Postives = 592/969 (61.09%), Query Frame = 0
 
Query:    3 TSSLWVGNLSSDVTESDLSRLFGKFGPIVKITLYSSKYFAFVHFKLPQDAKSAKDSLQATLLRSSPLKIDFAKPAKPCKSLWVGGISPSVTKEELEEQFRRFGEIQEFKFLRERNTAYVDYFVMEDATEALKNLNGLEVGGNMIRVDYLRSQASKKEQ-PDFREARDTQSLNRSTGGSNPSWIPQHPLRNISAAYGDTRPQHIQSPVGPKGDGQPSKVLWVSYPPSYPMDKQMLHNAMILFGEIEGITLFPSGNYSLVEFRSVEEAKLAKEGLEGRLFSDPRILIMYSNSEAVPSNGQSGFYSDVEGPRTDVLSNDVQGYPQ----------IVPYSIAGNVPSRGVSGPGILGRPLGPLGSFEPL----QQLSLTKHQSLQDSNTNLLVGVSNRKRLSPSPGILSSPSQAVQPSMRP-ASGTWDAFEASQLQRESKRFRVGGLSALSDRS--LEKMDEHYMILNQFNGHGQ--GGAIRGAAATVSGMNRSSTVEPRVLTGGTVQGHPEHDCIWRGVIAKGGQHVCRARCFPLEKEFEFEIPEVVNCSARTGLDMLAKHYGDAVGFNIIFFLPDSVEDFAPYTEFLRYLGAKNRAGVAKFDDGTTLFLVPPSDFLESTLNIAGPERLYGVVLKFRSHVFGST--AEHTLQRNYIDRPVMPPQFDNRVMLQEERLMQTDYNRSMQGNPNTFSNSVA-PSTNSVPGEAFPA-NSTSLSNAGVTLTPELIATLASLLPAKGNTLG---AQPLSGSSNPGPMQTPGATDRRH--PHGWDHEQTKMSEPSGHLINQAGYHYN-SQAQIPLDHHYSLGQNLPNHAAQGVAANNRIQDATFNMRNDEFSSRQITSSVSHPHAGQYLVSPQNNLQCKVETSQETRHGYVQGINASAAYSASPLLPITNSVTLSHQVSNSTVSQHLSSNPNDGGNFGLDSQKQIQPAQSHL-GAVQGTLNEETDKNERYRSTLQFAAN 940
            +++LWVGNLS+DVT+SDL  LF K+G +  IT Y+S+ +AFV+FK  + AK+A ++L  T LR + +KI+FAKPAKPCKSLWV GISPSVTKE LE++F +FG+I+EFKF+RERNTAY+DYF +EDA++ALK++NG  +GG+ IRVD+LRS  S++E   D+R++R+ Q +                              H +S  G KGDGQPS +LW+ YPPS  MD+QMLHNAMILFGEIE I  FPS +YS VEFRSV+EA+ AKEGL+GRLF+DPRI IMYS+     S     FY  V+GPR DVL ++    P           +VP +++   PS GV GP  L RP GP GSFEPL    +   L+      D+N N L+G  N +R SP+PGI  SPSQ  +   RP +SG WD F+A+QLQRESKR R+  +    D +  L+KMD+H   L+Q  G G    G+  G        N     E R+ T G  QG+P+HD IWRGVIAKGG  VCRARC P+ +  EFEIPEVVNCSARTGLDML KHY DAVGF++IFFLPDS EDFA YTEFLRYLGAK+RAGVAKFDDGTTLFLVPPSDFL   L + GPERLYGVVLKF  H   +T     ++Q  YID   M P  +   M QEE+ +Q DYNR +  +    S  +A P+T+S+  +  P+ N+ ++S AG+ LTPELIATLASLLPA   + G   AQP  G+S   P   P     R      W H+++   E + H ++Q    YN  Q Q+     Y    +  +  A GV  ++++QD  F +     SS +  S+  +P       SP                        +A++S        NSVT S+QV  S V+Q L++ P        +   Q+Q  QS + GA QGT   E DKN+RY+STLQFAAN
Sbjct:   24 SNNLWVGNLSTDVTDSDLMSLFSKYGAVDSITAYASRSYAFVYFKRVEHAKAALEALHGTYLRGNSMKIEFAKPAKPCKSLWVSGISPSVTKEVLEKEFLKFGKIEEFKFIRERNTAYIDYFRLEDASQALKSMNGKRIGGDNIRVDFLRSHTSRREHVTDYRDSREGQKV------------------------------HSESSGGQKGDGQPSNILWIGYPPSVHMDEQMLHNAMILFGEIERIRSFPSKHYSFVEFRSVDEARRAKEGLQGRLFNDPRISIMYSSIGPTRSKDYPVFYPGVKGPRPDVLFDEPPFQPAHIDMFNHNRPLVPNALSRPAPSGGVLGPNRLMRPFGPQGSFEPLLSGPEFNDLSALNKRLDANPNSLIGGPNWRRSSPAPGIFPSPSQVAK---RPVSSGAWDVFDANQLQRESKRSRMDTVLPAYDSAFPLKKMDDHGSGLDQLYGLGPQVDGSPSGPFNNFQEKNLYGPAETRMTTRGMGQGYPDHDYIWRGVIAKGGTPVCRARCVPVGEGIEFEIPEVVNCSARTGLDMLTKHYADAVGFSVIFFLPDSEEDFASYTEFLRYLGAKDRAGVAKFDDGTTLFLVPPSDFLYKVLKVEGPERLYGVVLKFPQHAPSNTYVQPQSIQSRYIDGQQM-PSHEYSGMHQEEKALQMDYNRLLHEDSLPPSKQLAPPTTDSISMQPAPSVNTAAMSQAGIALTPELIATLASLLPASSKSSGAETAQPSVGTSTTRPPLPPTTELHREVLQRDWTHDRSH-PEQTAHPVHQVENQYNPHQHQLSQLQTYPTALSTSSDYAMGVTVHSQVQDPAFQLPQQGTSSSRPLSNFRNPFTKWTDGSPPPG-------------------QPAASHSG-------NSVTFSNQVHGSDVTQPLTAMPLAADKGYSEVPNQVQQLQSTVYGANQGTSEVEVDKNQRYQSTLQFAAN 931    
BLAST of XM_017402759.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068U798 ((Uncharacterized protein {ECO:0000313|EMBL:CDP03488.1}))

HSP 1 Score: 764.222 bits (1972), Expect = 0.000e+0
Identity = 465/979 (47.50%), Postives = 603/979 (61.59%), Query Frame = 0
 
Query:    3 TSSLWVGNLSSDVTESDLSRLFGKFGPIVKITLYSSKYFAFVHFKLPQDAKSAKDSLQATLLRSSPLKIDFAKPAKPCKSLWVGGISPSVTKEELEEQFRRFGEIQEFKFLRERNTAYVDYFVMEDATEALKNLNGLEVGGNMIRVDYLRSQASKKEQ-PDFREARDTQSLNRSTGGSNPSWIPQHPLRNISAAYGDTRPQHIQSPVGPKGDGQPSKVLWVSYPPSYPMDKQMLHNAMILFGEIEGITLFPSGNYSLVEFRSVEEAKLAKEGLEGRLFSDPRILIMYSNSEAVPSNGQSGFYSDVEGPRTDVLSNDV---QGYPQIVPYSIAGNVPSRGVSGPGILGRPLGPLGSFEPLQQLSLTKHQSLQDSNTNLLVGVSNRKRLSPSPGILSSPSQAVQPSMRPASGTWDAFEASQLQRESKRFRVGGLSALSDRSLEK--MDEHYMILNQFNGHGQGGAIRGAAATVSGMNRSSTVEPRVLTGGTVQGHPEHDCIWRGVIAKGGQHVCRARCFPLEKEFEFEIPEVVNCSARTGLDMLAKHYGDAVGFNIIFFLPDSVEDFAPYTEFLRYLGAKNRAGVAKFDDGTTLFLVPPSDFLESTLNIAGPERLYGVVLKFRSHVFGST--AEHTLQRNYIDRPVMPPQFDN-RVMLQEERLMQTDYNRSMQGNPNTFSNSVAPSTNSVPGEAFPANSTSLSNAGVTLTPELIATLASLLPAKGN-----TLGAQPLSGSSNPGP-MQTPGATDRRHPHGWDHEQTKMSEPSGHLINQAGYHYNSQAQ-IPLDHHYSLGQNLPNHAAQGVAANNRIQDATFNMR-NDEFSSRQITSSVSHPHAGQYLVSPQNNL----QCKVETSQETRHGYVQGINASAAYSASPLLPITNSVTLSHQVSNSTVSQHLSSNPNDGGNFGLDSQKQIQPAQSHL-GAVQGTLNEETDKNERYRSTLQFAANLLLQIQQNPGSEAGQGPGN 959
            +++LW+GNLS +VT+S+L+ LF K GP+  IT Y+S+ + FV++K  +DAKSAK+ LQ T+L  +P+KI+FAKPAKPCKSLWV GIS SV+KEELEE+F RFG+IQEFKFLR+RNTAYVD+  +EDA++ALKN+NG  +GG+ IRVD+LRSQ S++EQ PDFR+AR+    NRS G  +  W+ Q      S   G  R Q  QSP G +GDGQPSKVLW+SYPPS  +D+ MLHNAMILFGEIE I  F   NY+ V+FRSV+EA+LAKEGL+G+LFSDPRI I YSNSE  P+    G Y   +G R D   NDV    G   I+ +  +G +P RG  GP  + RPLGP G+F+    L    H  L         G  N +R SP+PG+LSSPS ++    R AS  WD ++ASQLQRESKR RV G     + S      D+  + L++  G           +   G +  S V  ++  GG  +  PE D +WRG+IAKGG  +C ARC P+ +    EIPEVVNC+ARTGLD+L KHY DAVGF+I FFLPDS  DFA YTEFLRYLGA+NRAGVAKFDDGTTLFLVPPSDFL + L + GPERLYGVVL+F      S+      +Q  Y+D             + QEE  +Q  YN+ +  +       +  S NS P    P N+ ++S AG+ LTP+LIATLAS+   +GN     +  +   S S+  GP +    A D+  P GW HE+ ++ E +G++  Q    ++SQAQ IP  H Y +  N  N  AQG    ++IQD  FNM+     SSR I S+   P  GQ  VS  +N+    Q  +       HG  QG +A   Y +S L   TN VTL  +++   V QH +S P        D + Q+Q   S L GA Q T   E +KN RY+STL FA NLL ++QQ PG++AGQG G+
Sbjct:   21 SNNLWIGNLSPEVTDSELTALFEKHGPVDSITNYASRSYGFVYYKKIEDAKSAKEKLQGTILHGNPIKIEFAKPAKPCKSLWVAGISQSVSKEELEEEFTRFGKIQEFKFLRDRNTAYVDFSRLEDASQALKNMNGRRIGGDQIRVDFLRSQPSRREQLPDFRDAREGHFPNRSIGPPDTRWMAQE-----SIQVGSKRHQ-FQSPGGRRGDGQPSKVLWISYPPSVQIDEDMLHNAMILFGEIERIKTFEDRNYAFVQFRSVDEARLAKEGLQGKLFSDPRISIEYSNSELAPNKDYLGNYPGTKGTRPDTYLNDVPFRHGQMDIISHD-SGVLPPRGAPGPDGIMRPLGPQGNFD----LQGGHHAHL---------GGPNWRRSSPAPGLLSSPSASLNLPNRSASSAWDVYDASQLQRESKRSRVEGTLQAHNSSFSARITDDQGLGLDEPYGLRTYAGSTDPLSNFEGRSHLSPVGMQISVGGLGKRIPEPDYVWRGIIAKGGSLICHARCVPIGEGISSEIPEVVNCTARTGLDLLTKHYADAVGFSIAFFLPDSEADFASYTEFLRYLGARNRAGVAKFDDGTTLFLVPPSDFLTNVLKVTGPERLYGVVLEFPQAASASSNIPPSLVQPQYVDAQQQASSLTGYNEIAQEEIGIQMGYNKVVPEDMKPPLKMLGSSLNSTP----PINNAAVSQAGLKLTPDLIATLASIY--QGNSKSSGSESSSVQSASTTLGPALNITPAPDKGLPQGWQHER-QVPEQAGYVTQQFNSQFHSQAQFIPQVHAYPVVSNTLNLPAQGALGYSQIQDRGFNMQPQGAVSSRPIASAT--PSQGQ--VSALSNVDQQHQLGMPHDPLKGHGMAQGTDALRLYGSSVLHQPTNLVTLGSEINGPNVLQH-ASMPQ---TTEADVRNQVQEHHSALQGAGQDTSETEEEKNRRYQSTLLFAVNLLNRVQQPPGTQAGQGSGS 964    
BLAST of XM_017402759.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WS43 ((flowering time control protein FPA-like {ECO:0000313|RefSeq:XP_027117516.1, ECO:0000313|RefSeq:XP_027117517.1}))

HSP 1 Score: 764.222 bits (1972), Expect = 0.000e+0
Identity = 465/979 (47.50%), Postives = 603/979 (61.59%), Query Frame = 0
 
Query:    3 TSSLWVGNLSSDVTESDLSRLFGKFGPIVKITLYSSKYFAFVHFKLPQDAKSAKDSLQATLLRSSPLKIDFAKPAKPCKSLWVGGISPSVTKEELEEQFRRFGEIQEFKFLRERNTAYVDYFVMEDATEALKNLNGLEVGGNMIRVDYLRSQASKKEQ-PDFREARDTQSLNRSTGGSNPSWIPQHPLRNISAAYGDTRPQHIQSPVGPKGDGQPSKVLWVSYPPSYPMDKQMLHNAMILFGEIEGITLFPSGNYSLVEFRSVEEAKLAKEGLEGRLFSDPRILIMYSNSEAVPSNGQSGFYSDVEGPRTDVLSNDV---QGYPQIVPYSIAGNVPSRGVSGPGILGRPLGPLGSFEPLQQLSLTKHQSLQDSNTNLLVGVSNRKRLSPSPGILSSPSQAVQPSMRPASGTWDAFEASQLQRESKRFRVGGLSALSDRSLEK--MDEHYMILNQFNGHGQGGAIRGAAATVSGMNRSSTVEPRVLTGGTVQGHPEHDCIWRGVIAKGGQHVCRARCFPLEKEFEFEIPEVVNCSARTGLDMLAKHYGDAVGFNIIFFLPDSVEDFAPYTEFLRYLGAKNRAGVAKFDDGTTLFLVPPSDFLESTLNIAGPERLYGVVLKFRSHVFGST--AEHTLQRNYIDRPVMPPQFDN-RVMLQEERLMQTDYNRSMQGNPNTFSNSVAPSTNSVPGEAFPANSTSLSNAGVTLTPELIATLASLLPAKGN-----TLGAQPLSGSSNPGP-MQTPGATDRRHPHGWDHEQTKMSEPSGHLINQAGYHYNSQAQ-IPLDHHYSLGQNLPNHAAQGVAANNRIQDATFNMR-NDEFSSRQITSSVSHPHAGQYLVSPQNNL----QCKVETSQETRHGYVQGINASAAYSASPLLPITNSVTLSHQVSNSTVSQHLSSNPNDGGNFGLDSQKQIQPAQSHL-GAVQGTLNEETDKNERYRSTLQFAANLLLQIQQNPGSEAGQGPGN 959
            +++LW+GNLS +VT+S+L+ LF K GP+  IT Y+S+ + FV++K  +DAKSAK+ LQ T+L  +P+KI+FAKPAKPCKSLWV GIS SV+KEELEE+F RFG+IQEFKFLR+RNTAYVD+  +EDA++ALKN+NG  +GG+ IRVD+LRSQ S++EQ PDFR+AR+    NRS G  +  W+ Q      S   G  R Q  QSP G +GDGQPSKVLW+SYPPS  +D+ MLHNAMILFGEIE I  F   NY+ V+FRSV+EA+LAKEGL+G+LFSDPRI I YSNSE  P+    G Y   +G R D   NDV    G   I+ +  +G +P RG  GP  + RPLGP G+F+    L    H  L         G  N +R SP+PG+LSSPS ++    R AS  WD ++ASQLQRESKR RV G     + S      D+  + L++  G           +   G +  S V  ++  GG  +  PE D +WRG+IAKGG  +C ARC P+ +    EIPEVVNC+ARTGLD+L KHY DAVGF+I FFLPDS  DFA YTEFLRYLGA+NRAGVAKFDDGTTLFLVPPSDFL + L + GPERLYGVVL+F      S+      +Q  Y+D             + QEE  +Q  YN+ +  +       +  S NS P    P N+ ++S AG+ LTP+LIATLAS+   +GN     +  +   S S+  GP +    A D+  P GW HE+ ++ E +G++  Q    ++SQAQ IP  H Y +  N  N  AQG    ++IQD  FNM+     SSR I S+   P  GQ  VS  +N+    Q  +       HG  QG +A   Y +S L   TN VTL  +++   V QH +S P        D + Q+Q   S L GA Q T   E +KN RY+STL FA NLL ++QQ PG++AGQG G+
Sbjct:   21 SNNLWIGNLSPEVTDSELTALFEKHGPVDSITNYASRSYGFVYYKKIEDAKSAKEKLQGTILHGNPIKIEFAKPAKPCKSLWVAGISQSVSKEELEEEFTRFGKIQEFKFLRDRNTAYVDFSRLEDASQALKNMNGRRIGGDQIRVDFLRSQPSRREQLPDFRDAREGHFPNRSIGPPDTRWMAQE-----SIQVGSKRHQ-FQSPGGRRGDGQPSKVLWISYPPSVQIDEDMLHNAMILFGEIERIKTFEDRNYAFVQFRSVDEARLAKEGLQGKLFSDPRISIEYSNSELAPNKDYLGNYPGTKGTRPDTYLNDVPFRHGQMDIISHD-SGVLPPRGAPGPDGIMRPLGPQGNFD----LQGGHHAHL---------GGPNWRRSSPAPGLLSSPSASLNLPNRSASSAWDVYDASQLQRESKRSRVEGTLQAHNSSFSARITDDQGLGLDEPYGLRTYAGSTDPLSNFEGRSHLSPVGMQISVGGLGKRIPEPDYVWRGIIAKGGSLICHARCVPIGEGISSEIPEVVNCTARTGLDLLTKHYADAVGFSIAFFLPDSEADFASYTEFLRYLGARNRAGVAKFDDGTTLFLVPPSDFLTNVLKVTGPERLYGVVLEFPQAASASSNIPPSLVQPQYVDAQQQASSLTGYNEIAQEEIGIQMGYNKVVPEDMKPPLKMLGSSLNSTP----PINNAAVSQAGLKLTPDLIATLASIY--QGNSKSSGSESSSVQSASTTLGPALNITPAPDKGLPQGWQHER-QVPEQAGYVTQQFNSQFHSQAQFIPQVHAYPVVSNTLNLPAQGALGYSQIQDRGFNMQPQGAVSSRPIASAT--PSQGQ--VSALSNVDQQHQLGMPHDPLKGHGMAQGTDALRLYGSSVLHQPTNLVTLGSEINGPNVLQH-ASMPQ---TTEADVRNQVQEHHSALQGAGQDTSETEEEKNRRYQSTLLFAVNLLNRVQQPPGTQAGQGSGS 964    
Match NameStatsDescription
A0A5B6Z809E-Value: 0.000e+0, PID: 51.01(Putative Flowering time control protein FPA {ECO:... [more]
A0A4S4DHL5E-Value: 2.560e-5, PID: 48.25(Uncharacterized protein {ECO:0000313|EMBL:THG0229... [more]
A0A7J7GMR6E-Value: 2.076e-5, PID: 48.66(Uncharacterized protein {ECO:0000313|EMBL:KAF5942... [more]
A0A2R6PXN0E-Value: 0.000e+0, PID: 48.51(Flowering time control protein like {ECO:0000313|... [more]
A0A2R6RY40E-Value: 0.000e+0, PID: 48.41(Flowering time control protein like {ECO:0000313|... [more]
A0A7J0DCN7E-Value: 0.000e+0, PID: 47.39(RNA binding protein {ECO:0000313|EMBL:GFS32303.1}... [more]
A0A6P3Z045E-Value: 0.000e+0, PID: 46.91(flowering time control protein FPA {ECO:0000313|R... [more]
A0A7J0E840E-Value: 0.000e+0, PID: 47.47(RNA binding protein {ECO:0000313|EMBL:GFY82643.1}... [more]
A0A068U798E-Value: 0.000e+0, PID: 47.50(Uncharacterized protein {ECO:0000313|EMBL:CDP0348... [more]
A0A6P6WS43E-Value: 0.000e+0, PID: 47.50(flowering time control protein FPA-like {ECO:0000... [more]
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
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