XM_017399457.1

Resource Type: 
Polypeptide
Name: 
XM_017399457.1
Identifier: 
XM_017399457.1-protein
Sequence: 
MALLQMMAHTHNNNNNTHTDDIAQDVKPTVFHDFLSKGSDLLPPAGAAPP
ASAASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRF
TRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGGPRRPQDEE
AFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLK
GQVVPFGYQHLSTRFKDSNVGPSIFHQAADEGSRTGMKGSGILSSINVSG
GTSDRNAPSASNQNSGNRIAETESSTNQQGEALVSRQMTIFYGGQAHVFD
DVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMA
INSVFPREFRHRFSMTGNSSHGIVSSNQTPFSPGSHGGSLVVKDLKDLNQ
VAEPSGEKRKHEL
Sequence Length: 
413
Sequence Checksum: 
c0bc84d5980af1318980bb88902d128e
View location in JBrowse: 
DCARv2_Chr6:4472468..4476981+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017399457.1, derives from mRNA, XM_017399457.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017399457.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017399457.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZWS8 (Tify domain-containing protein {ECO:0000259|PROSITE:PS51320})

HSP 1 Score: 404.06 bits (1037), Expect = 2.383e-136
Identity = 230/437 (52.63%), Postives = 283/437 (64.76%), Query Frame = 0
 
Query:    1 MALLQMMAHTHNNNNNTHTDDIAQDVKPTVFHDFLSKG--SDLLPP---AGAAPPASAASSGGP---------RGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGG--PRRPQDEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSIF-HQAADEGSRTGMKGSGILSSINVSGGTSDRNA--------PSASNQNSGNRIAETESST--NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQTPFSPGSHGGSLVVKDLKDLNQVAEPSGEKRK 410
            MA++ MMA +  +N N+ TD+    VKPT+FHDFL K   SD  P    AG   P+ A+ +            RGPIS+TSDL SE+  GNH+EGVPFYG R D +GPEI++RF  +KRS+ +SG++GS RD   QM P S E+SH+MKM R  GG  PRR  +EE F  MH  RPT+ SL+LQ     R D N S+WERA PI+V P   Y    GQV PFGYQ  S R KD+NVGPS+  H AADEGSRTG+KGSGILSSIN SGG S+R +        PS   Q S   I+E ESS   ++ G    SRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWST +   S +RP P E  +P  ENETG++ N V  REFR R  +TG+SSHG  + ++   +PG H G +   D +   Q AEP+ E+++
Sbjct:    1 MAVVLMMAQS-KSNANSGTDE----VKPTIFHDFLGKNCTSDSPPATKTAGDVRPSEASPTASASAGASSGGGRGPISTTSDLGSERQVGNHFEGVPFYGPRSDFSGPEISNRFAGSKRSNSDSGFMGSLRDGFPQMGPESSESSHLMKMLRNAGGERPRRSHEEEMFFSMHQMRPTAASLILQPPPGIRTDANVSRWERAIPINVSPTAQYHPRAGQVSPFGYQIPSNRSKDANVGPSVISHAAADEGSRTGIKGSGILSSINASGGVSERISERNPSGLLPSGRKQKSVTHISEPESSIPPSRHGLTSASRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYLPKSAVRPSPGESCMPSGENETGVSSNFVLRREFRGRLPVTGSSSHGFGTGDRISVAPGGHQGIVSGNDTRTA-QAAEPASEEKR 431
[Close]
BLAST of XM_017399457.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZV93 (Tify domain-containing protein {ECO:0000259|PROSITE:PS51320})

HSP 1 Score: 386.726 bits (992), Expect = 1.226e-129
Identity = 227/434 (52.30%), Postives = 277/434 (63.82%), Query Frame = 0
 
Query:    1 MALLQMMAHTHNNNNNTHTDDIAQDVKPTVFHDFLSK--GSDLLPPAGAA-------------PPASAASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGG--PRRPQDEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSI-FHQAADEGSRTGMKGSGILSSINVSGGTSDRN----APSASNQNSGNRIAETESST--NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQTPFSPGSHGGSLVVKDLKDLNQVAEPSGEKRK 410
            MA+L MMA + +N N +     A +VKPT+FHDFLS+   SD  P A  A                 A+S GG RGPIS+TSDL SE+   NH EGVPFYG R D +GPEI++R   +KRS+ +SG++GS RD   QM P S E+SH+MKM R  GG  PRR  +EE F  MH  RP S SL+LQ  T  R D + S+WERA PI+VGP   Y     QV PFGYQ  S + KD+N GPSI F  AADEGSRTG+KGSGILSSIN SGG S++      PS S Q S   I+E ESS   +Q G     RQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWST +   S ++P   E  +P  ENETG++ N V  REFR R  +TG+SSHG  + ++   +PG H G +   D +   Q AEP+ E+++
Sbjct:    1 MAVLLMMAQSKSNANTS-----ADEVKPTIFHDFLSRNCASDSSPAAKTAGDVRLSEASQSASASLGASSGGGGRGPISTTSDLGSERQVSNHLEGVPFYGPRSDFSGPEISNRLAGSKRSNSDSGFMGSFRDGFPQMGPESSESSHLMKMLRNVGGERPRRSHEEEMFFSMHSARPASASLILQPPT-GRTDASFSRWERAIPINVGPTAQYPPRASQVAPFGYQVPSNKSKDANAGPSIIFQAAADEGSRTGIKGSGILSSINASGGVSEKTPSGMLPSGSKQKSMTHISEPESSIPPSQHGLTSAGRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYLSKSAVKPSHGESCMPSGENETGVSSNFVLRREFRGRLPVTGSSSHGFGTGDRISVAPGGHQGIVSGNDTRTA-QAAEPASEEKR 427
[Close]
BLAST of XM_017399457.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZTY1 (Tify domain-containing protein {ECO:0000259|PROSITE:PS51320})

HSP 1 Score: 385.571 bits (989), Expect = 5.757e-129
Identity = 226/434 (52.07%), Postives = 273/434 (62.90%), Query Frame = 0
 
Query:    1 MALLQMMAHTHNNNNNTHTDDIAQDVKPTVFHDFLSK--GSDLLPPAGAA-------------PPASAASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGG--PRRPQDEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSI-FHQAADEGSRTGMKGSGILSSINVSGGTSDRN----APSASNQNSGNRIAETESST--NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQTPFSPGSHGGSLVVKDLKDLNQVAEPSGEKRK 410
            MA+L MMA + +N N +     A +VKPT+FHDFLS+   SD  P A  A                 A+S GG RGPIS+TSDL SE+   NH EGVPFYG R D +GPEI++R   +KRS+ +SG++GS RD   QM P S E+SH+MKM R  GG  PRR  +EE F  MH  RP S SL+LQ  T  R D + S+WERA PI+VGP   Y     QV PFGYQ  S + KD+N GPSI F  AADEGSRTG+KGSGILSSIN SGG S++      PS S Q S   I+E ESS   +Q G     RQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWST +   S ++P   E  +P  ENETG+  N   P EFR R   TG+SSHG  + ++   +PG   G +  KD +   Q AEP  E+++
Sbjct:    1 MAVLLMMAQSKSNANTS-----ADEVKPTIFHDFLSRNCASDSSPAAKTAGDVRLSEASQSASASLGASSGGGGRGPISTTSDLGSERQVSNHLEGVPFYGPRSDFSGPEISNRLAGSKRSNSDSGFMGSFRDGFPQMGPESSESSHLMKMLRNVGGERPRRSHEEEMFFSMHSARPASASLILQPPT-GRTDASFSRWERAIPINVGPTAQYPPRASQVAPFGYQVPSNKSKDANAGPSIIFQAAADEGSRTGIKGSGILSSINASGGVSEKTPSGMLPSGSKQKSMTHISEPESSIPPSQHGLTSAGRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYLSKSAVKPSHGESCMPSGENETGVFSNFALPHEFRGRLPATGSSSHGFGTGDRISVAPGGFQGGVSGKDTRTSVQAAEPGSEEKQ 428
[Close]
BLAST of XM_017399457.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A687 (Tify domain-containing protein {ECO:0000259|PROSITE:PS51320})

HSP 1 Score: 376.711 bits (966), Expect = 2.901e-125
Identity = 229/477 (48.01%), Postives = 277/477 (58.07%), Query Frame = 0
 
Query:    1 MALLQMMAHTHNNNNNTHTDDIAQDVKPTVFHDFLSKGSDLLPPAGAAPPASAAS-------------------SGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMK----------------------------------------MFRGTGG--PRRPQDEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPS-IFHQAADEGSRTGMKGSGILSSINVSGGTSDRN----APSASNQNSGNRIAETESST--NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQTPFSPGSHGGSLVVKDLKDLNQVAEPSGEKR 409
            MA++ MMA +  +N NT TD+    VKPT+FHDFL +       A  + PA+  +                   SGG RGPIS+TSDL SE+  GNH EGVPFYG R D +GPEI++R    KRS+ +SG++GS RD   Q  P S E+SH+MK                                        M R  GG  PRR  +EE F  MHP RPTS SL+LQ   S R D N S+WER  PI+VGP   Y +  GQV PFG+Q  S R KD+N GPS IF  AADEGSRTG+KGSGILSSIN S G S++      PS S Q S   I+E ESS   ++ G     RQMTIFYGGQAHVFDDVHPNKAD+IMALAGSNGGSWST +   S +RP   E  +P  ENETG+  N V PREFR R  +TG+SSHG  + ++   +PG   GS+ VKD +   Q AEP  EK+
Sbjct:    1 MAVMLMMAQS-KSNANTSTDE----VKPTIFHDFLGRNC-----ASESSPATKTAGDIRLPEASQSASASVGASSGGGRGPISTTSDLGSERQVGNHLEGVPFYGPRSDFSGPEISNRLAGTKRSNSDSGFMGSFRDGFPQKGPESFESSHLMKVHSNAMFIFFLSHSYVRQKPIYIMVVLFIFSDSGSLVQIQMLRNVGGERPRRSHEEEMFFSMHPARPTSASLILQ-PPSGRTDANVSRWERGIPINVGPTAQYPTRAGQVAPFGHQVPSNRSKDANAGPSVIFQVAADEGSRTGIKGSGILSSINASAGVSEKTPSGMLPSGSKQKSAAHISEPESSIPPSRHGLTSAGRQMTIFYGGQAHVFDDVHPNKADIIMALAGSNGGSWSTTYLPKSGVRPSHDESFMPSGENETGVFRNFVLPREFRARLPVTGSSSHGFGTGDRISVAPGGQ-GSVSVKDTRTSVQAAEPGSEKK 465
[Close]
BLAST of XM_017399457.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q372 ((Protein TIFY like {ECO:0000313|EMBL:PSS01161.1}))

HSP 1 Score: 366.311 bits (939), Expect = 6.968e-122
Identity = 215/400 (53.75%), Postives = 256/400 (64.00%), Query Frame = 0
 
Query:   25 DVKPTVFHDFLSKGSDLLPPAG-AAPPASAASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGGPRRPQ--DEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSIFHQAA-DEGSRTGMKGSGILSSINVSGGTSDRNAP----SASNQNSGNRIAETESST--NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQTPF---SPGSHGGSLVVKDLKDLNQVAEP-SGEKRK 410
            +V PT+FHDFL  G   +P +      AS A SGG RGPIS+ SDL SE+   NH EGVPFY  R DLTG EI++RF  NKRS+ +S + GSSRD   ++ P SL+  H+MKM R  GG R  Q  DE    GM+P RPT  + +LQ  + +R D   SKWERA P+ V P++ Y    GQVVP+  Q  S RFKD+N GPS+  QAA DEGS TG+KGSGILSSIN   G SD N      S S Q SG   +E ESST  ++ G    SRQMTIFYGG AHVFDDVHPNKADVI+ALAGSNGGSWST      +  PPP E  +PG +NET MA N    REFR R S+TG SSHG  S +Q      S G+H GS V+KD K+  Q AE  +GEKR+
Sbjct:   14 EVNPTIFHDFL--GRTCVPDSSPVVAEASPAVSGGGRGPISAASDLGSERHVANHLEGVPFYDPRSDLTGTEISNRFIGNKRSNSDSAFKGSSRDGFPKVGPDSLDGVHLMKMLRSEGGERSRQSHDEAMLFGMNPMRPTPTTRILQPPSGSRTDATVSKWERAMPLHVSPMMQYHPRMGQVVPYS-QIPSNRFKDANAGPSVLSQAAADEGSCTGIKGSGILSSINAGSGVSDLNPSGVLMSGSKQKSGTHNSEPESSTPPSRHGLTSASRQMTIFYGGHAHVFDDVHPNKADVILALAGSNGGSWSTTMYGPKSAAPPPVESHIPGGDNETRMASNFASSREFRRRLSVTGTSSHGFGSGDQISVPLASAGAHRGSAVMKDGKNPVQAAETRTGEKRE 410
[Close]
BLAST of XM_017399457.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7GZ24 (Tify domain-containing protein {ECO:0000259|PROSITE:PS51320})

HSP 1 Score: 362.073 bits (928), Expect = 4.983e-120
Identity = 211/427 (49.41%), Postives = 265/427 (62.06%), Query Frame = 0
 
Query:    7 MAHTHNNNNNTHTDDIAQDVKP--TVFHDFLSKG----------SDLLPPAGAAPPASA---ASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGGPR--RPQDEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSIFHQAADEGSRTGMKGSGILSSINVSGGTSDRNAP----SASNQNSGNRIAETESST-NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQTPFSPGSHGGSLVVKDLKDLNQVAE-PSGEKRK 410
            MAH  +N + + T   A +VKP  T FHDFL KG            ++ P+ A+P AS    ASSGG RGPIS+TSDL SE+  GNH+EGVPFYGLR +L+GPE ++R +  KRS+ +S  +G +RD    ++P +LE+SH+ K+ R  GG R  RPQD+E    MHP RP   SL+ Q + + R DVNASKW+R  P++VGP L Y      V+PFGYQ  S+RF D+N GPS   QAADEGSRTG+KGSGILSSIN SGG SDR+      S + Q S    ++ ESS   +QG +    QMTIFYGGQAHVFD+VHPNKADVIM+LAGSNGGSWST +    T RP   E  LP  ENET    N    RE   R S     +HG  S +      G + G  + K+ K   Q+AE  + EKR+
Sbjct:    1 MAHIQSNKSVSGTATEADEVKPAATTFHDFLGKGYTQDSSPAMSGRVVLPSEASPSASVSLGASSGGGRGPISTTSDLGSERVVGNHFEGVPFYGLRGELSGPETSNRLSGTKRSNSDS-LMGLTRDKFAMLRPDALESSHMQKLLRNAGGERHGRPQDQEMSFVMHPLRPLHPSLISQPSATGRTDVNASKWDRVIPVNVGPTLQYPPRASHVLPFGYQSSSSRFGDANAGPSNISQAADEGSRTGIKGSGILSSINASGGISDRSLSGLPLSGAKQKSTLHFSDLESSNPCRQGSSPAGSQMTIFYGGQAHVFDNVHPNKADVIMSLAGSNGGSWSTTYAPKPTARPSTGENYLPKAENETTKGNNLALIRELHGRSSGKAGFTHGFGSGDHISIPQGINRGVSITKETKTAVQLAENVTDEKRE 426
[Close]
BLAST of XM_017399457.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2CGM1 (Tify domain-containing protein {ECO:0000259|PROSITE:PS51320})

HSP 1 Score: 360.533 bits (924), Expect = 2.002e-119
Identity = 210/427 (49.18%), Postives = 262/427 (61.36%), Query Frame = 0
 
Query:    7 MAHTHNNNNNTHTDDIAQDVKP--TVFHDFLSKG----------SDLLPPAGAAPPASA---ASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGGPR--RPQDEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSIFHQAADEGSRTGMKGSGILSSINVSGGTSDRNAP----SASNQNSGNRIAETESST-NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQTPFSPGSHGGSLVVKDLKDLNQVAE-PSGEKRK 410
            MAH  +N   + T   A +VKP  T FHDFL KG            ++ P+ A+P AS    ASSGG RGPIS+TSDL SE+  GNH+EGVPFYGLR +L+GPE ++R +  KRS+ +S  +G +RD    ++P +LE+SH+ K+ R  GG R  RPQD+E    MHP RP   SL+ Q + + R DVNASKW+R  P++VGP L Y      V+PFGYQ  S+RF D+N GPS   QAADEGSRTG+KGSGILSSIN SGG SDR       S +   S    ++ ESS   +QG +    QMTIFYGGQAHVFD+VHPNKADVIM+LAGSNGGSWST +      RP   E  LP  ENET    N    RE   R S     +HG  S +      G + G  + K+ K + QVAE  + EKR+
Sbjct:    1 MAHIQSNKTVSGTATEADEVKPVATTFHDFLGKGYTQDSSPAMSGRVVLPSEASPSASVSLGASSGGGRGPISTTSDLGSERVVGNHFEGVPFYGLRGELSGPETSNRLSGTKRSNSDS-LMGLTRDKFAMLRPDALESSHMQKLLRNAGGERHGRPQDQEMSFVMHPLRPLHPSLISQPSVTGRTDVNASKWDRVIPVNVGPTLQYPPRASHVLPFGYQSSSSRFGDANAGPSNISQAADEGSRTGIKGSGILSSINASGGISDRGLSGVPLSGAKHKSTLHFSDLESSNPCRQGSSPAGSQMTIFYGGQAHVFDNVHPNKADVIMSLAGSNGGSWSTTYAPKPAARPSTGENYLPKAENETTKGNNLALIRELHGRSSGKAGFTHGFGSGDHISIPQGINRGVSITKEAKSVAQVAENVTDEKRE 426
[Close]
BLAST of XM_017399457.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1CGQ2 ((Protein TIFY 8 {ECO:0000313|EnsemblPlants:PGSC0003DMT400067114}))

HSP 1 Score: 357.066 bits (915), Expect = 4.191e-118
Identity = 211/426 (49.53%), Postives = 259/426 (60.80%), Query Frame = 0
 
Query:    7 MAHTHNNNNNTHTDDIAQDVKP--TVFHDFLSKG----------SDLLPPAGAAPPASA---ASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGGPRR--PQDEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSIFHQAADEGSRTGMKGSGILSSINVSGGTSDRNAP----SASNQNSGNRIAETESST-NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQTPFSPGSHGGSLVVKDLKDLNQVAE-PSGEKR 409
            MAH  +N + + T   A +VKP  T FHDFL KG            ++ P+ A+P AS    ASSGG RGPIS+TSDL SE+  GNH+EGVPFYGLR +L+GPE ++R    KRS+ +S  +GS+RD    ++  +LE+SH+ K+ R  GG RR  PQD+E    MHP RP   SL+ Q + + R DVNASKW+R  P++VGP L Y      V+PFGYQ  S RF D+N GPS   QAADEGSRTG+KGSGILSSIN SGG SDR+      S + Q S    ++ ESS   +QG +    QMTIFYGGQAHVFD+VHPNKADVIM+LAGSNGGSWST +      RP   E   P  ENET    N    REF  R S     +HG  S +      G   G    K+ K   QVAE  + EKR
Sbjct:    1 MAHIQSNKSVSGTATAADEVKPAATTFHDFLGKGYPQDSSPGMSGRVVLPSEASPSASVSLGASSGGGRGPISTTSDLGSERVVGNHFEGVPFYGLRGELSGPETSNRLLGTKRSNSDS-LMGSTRDKFAMLRSDALESSHMQKLLRNAGGERRGRPQDQEMSFVMHPMRPLHASLISQPSATGRTDVNASKWDRVIPVNVGPTLQYPPRASHVLPFGYQSSSNRFADANAGPSNISQAADEGSRTGIKGSGILSSINASGGISDRSLSGVPLSGAKQKSTLHFSDLESSNPCRQGSSPAGSQMTIFYGGQAHVFDNVHPNKADVIMSLAGSNGGSWSTTYAPKPAARPSTGENYSPKAENETTKGNNLALIREFHGRSSGKAGFTHGFGSGDHISIPQGVLRGVSTTKEAKTAVQVAENVTDEKR 425
[Close]
BLAST of XM_017399457.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6Q1V2 ((Putative transcription factor TIFY family {ECO:0000313|EMBL:PRQ28146.1}))

HSP 1 Score: 352.829 bits (904), Expect = 2.722e-116
Identity = 221/442 (50.00%), Postives = 280/442 (63.35%), Query Frame = 0
 
Query:    1 MALLQMMAHTHNNNNNTHTDDIAQD-----VKPTVFHDFLS-------------KGSD--LLPPAGAAPPASAASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFR-GTGG--PRRPQDEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSIFHQ-AADEGSRTGMKGSGILSSINVSGGTSDRNA----PSASNQNSGNRIAETESST-NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQTPFSPGSHGGSLVVKDLKDLNQVAEPSGEKRKHEL 413
            MA+L+M A   NN +      + Q+     VKP +FHDFL              KGSD  L   + +A  +   SSGG RGPIS+TSDL SE+ AGNH EGVP+YG R D++GPEI++R   +KRS+ +S ++GSSRD +  M P SLE+SH+MKMFR GTGG  PRR  D+EA     P RPTS +L+ Q     R D N SKWER+TP+++G  + Y    G   PF +Q  S RF+D+N G +   Q AADEGSRTG+KG GILS+IN S G SDRN+    PS S Q SG   +E E  T ++ G A  +RQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWST ++   T++ P +E  +P  E ETG A N    RE+R R S+ GNSS G+  +++   + G H GS + KD ++  Q  EP G K K EL
Sbjct:    1 MAVLKM-ALPSNNASTQKQQKLKQEEEDQLVKP-MFHDFLGMKPSTDSPVVLGPKGSDSRLTEASPSASASLGGSSGGGRGPISTTSDLGSERQAGNHLEGVPYYGPRSDISGPEISNRILGSKRSNSDSTFMGSSRDGIPHMGPDSLESSHLMKMFRNGTGGERPRRSIDDEAVFATQPMRPTSANLIFQTPHGGRVDNNISKWERSTPMNLGGAVQYPPRGGHFAPFVHQLPSNRFRDANAGANNISQLAADEGSRTGIKGPGILSAINASSGASDRNSSVVLPSGSRQKSGTNTSEPEPLTPSRHGFASANRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYSLKPTVK-PGSESHMPSGEVETGTASNVGLVREYRGRLSIPGNSSPGVGFADRILTAAGGHQGSNLAKDTRNPVQATEP-GSKEKIEL 438
[Close]
BLAST of XM_017399457.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0INW3 (Tify domain-containing protein {ECO:0000259|PROSITE:PS51320})

HSP 1 Score: 352.443 bits (903), Expect = 3.123e-116
Identity = 209/426 (49.06%), Postives = 257/426 (60.33%), Query Frame = 0
 
Query:    7 MAHTHNNNNNTHTDDIAQDVKP--TVFHDFLSKG----------SDLLPPAGAAPPASA---ASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGGPRR--PQDEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSIFHQAADEGSRTGMKGSGILSSINVSGGTSDRNAP----SASNQNSGNRIAETESST-NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQTPFSPGSHGGSLVVKDLKDLNQVAE-PSGEKR 409
            MA   +N + + T   A +VKP  T FHDFL KG            ++ P+ A+P AS    ASSGG RGPIS+TSDL SE+  GNH+EGVPFYGLR +L+GPE ++R    KRS+ +S  +GS+RD    ++  +LE+SH+ K+ R  GG RR  PQD+E    MHP RP   SL+ Q + + R DVNASKW+R  P++VGP L Y      V+PFGYQ  S RF D+N GPS   QAADEGSRTG+KGSGILSSIN SGG SDR+      S + Q S    ++ ESS   +QG +    QMTIFYGGQAHVFD+VHPNKADVIM+LAGSNGGSWST +      RP   E   P  ENET    N    RE   R S     +HG  S +      G   G    K+ K   QVAE  + EKR
Sbjct:    1 MAXIQSNKSXSXTXTAADEVKPAATTFHDFLGKGYPQDSSPGMSGRVVLPSEASPSASVSLGASSGGGRGPISTTSDLGSERVVGNHFEGVPFYGLRGELSGPETSNRLLGTKRSNSDS-LMGSTRDKFAMLRSDALESSHMQKLLRNAGGERRGRPQDQEMSFVMHPMRPLHASLISQPSATGRTDVNASKWDRXIPVNVGPTLQYPPRASHVLPFGYQSSSNRFGDANAGPSNISQAADEGSRTGIKGSGILSSINASGGISDRSLSGVPLSGAKQKSTLHFSDLESSNPCRQGSSPAGSQMTIFYGGQAHVFDNVHPNKADVIMSLAGSNGGSWSTTYAPKPAARPSTGENYSPKAENETTKGNNLALIRELHGRSSGKAGFTHGFGSGDHISIPQGVLRGVSTTKEAKTAVQVAENVTDEKR 425
Match NameStatsDescription
A0A5B6ZWS8E-Value: 2.383e-136, PID: 52.63Tify domain-containing protein {ECO:0000259|PROSIT... [more]
A0A5B6ZV93E-Value: 1.226e-129, PID: 52.30Tify domain-containing protein {ECO:0000259|PROSIT... [more]
A0A5B6ZTY1E-Value: 5.757e-129, PID: 52.07Tify domain-containing protein {ECO:0000259|PROSIT... [more]
A0A5J5A687E-Value: 2.901e-125, PID: 48.01Tify domain-containing protein {ECO:0000259|PROSIT... [more]
A0A2R6Q372E-Value: 6.968e-122, PID: 53.75(Protein TIFY like {ECO:0000313|EMBL:PSS01161.1})[more]
A0A3Q7GZ24E-Value: 4.983e-120, PID: 49.41Tify domain-containing protein {ECO:0000259|PROSIT... [more]
A0A6N2CGM1E-Value: 2.002e-119, PID: 49.18Tify domain-containing protein {ECO:0000259|PROSIT... [more]
M1CGQ2E-Value: 4.191e-118, PID: 49.53(Protein TIFY 8 {ECO:0000313|EnsemblPlants:PGSC000... [more]
A0A2P6Q1V2E-Value: 2.722e-116, PID: 50.00(Putative transcription factor TIFY family {ECO:00... [more]
A0A0V0INW3E-Value: 3.123e-116, PID: 49.06Tify domain-containing protein {ECO:0000259|PROSIT... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.