XM_017399458.1

Resource Type: 
Polypeptide
Name: 
XM_017399458.1
Identifier: 
XM_017399458.1-protein
Sequence: 
MALLQMMAHTHNNNNNTHTDDIAQDVKPTVFHDFLSKGSDLLPPAGAAPP
ASAASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRF
TRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGGPRRPQDEE
AFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLK
GQVVPFGYQHLSTRFKDSNVGPSIFHQAADEGSRTGMKGSGILSSINVSG
GTSDRNAPSASNQNSGNRIAETESSTNQQGEALVSRQMTIFYGGQAHVFD
DVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMA
INSVFPREFRHRFSMTGNSSHGIVSSNQTPFSPGNIVYESSLPSDYEMCC
Sequence Length: 
400
Sequence Checksum: 
91a7fd905eb3a378b4267939f98f2b24
View location in JBrowse: 
DCARv2_Chr6:4472468..4475622+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017399458.1, derives from mRNA, XM_017399458.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017399458.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017399458.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZWS8 (Tify domain-containing protein {ECO:0000259|PROSITE:PS51320})

HSP 1 Score: 392.119 bits (1006), Expect = 5.274e-132
Identity = 226/411 (54.99%), Postives = 272/411 (66.18%), Query Frame = 0
 
Query:    1 MALLQMMAHTHNNNNNTHTDDIAQDVKPTVFHDFLSKG--SDLLPP---AGAAPPASAA---------SSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGG--PRRPQDEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSIF-HQAADEGSRTGMKGSGILSSINVSGGTSDRNA--------PSASNQNSGNRIAETESST--NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQTPFSPG 384
            MA++ MMA +  +N N+ TD+    VKPT+FHDFL K   SD  P    AG   P+ A+         SSGG RGPIS+TSDL SE+  GNH+EGVPFYG R D +GPEI++RF  +KRS+ +SG++GS RD   QM P S E+SH+MKM R  GG  PRR  +EE F  MH  RPT+ SL+LQ     R D N S+WERA PI+V P   Y    GQV PFGYQ  S R KD+NVGPS+  H AADEGSRTG+KGSGILSSIN SGG S+R +        PS   Q S   I+E ESS   ++ G    SRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWST +   S +RP P E  +P  ENETG++ N V  REFR R  +TG+SSHG  + ++   +PG
Sbjct:    1 MAVVLMMAQS-KSNANSGTDE----VKPTIFHDFLGKNCTSDSPPATKTAGDVRPSEASPTASASAGASSGGGRGPISTTSDLGSERQVGNHFEGVPFYGPRSDFSGPEISNRFAGSKRSNSDSGFMGSLRDGFPQMGPESSESSHLMKMLRNAGGERPRRSHEEEMFFSMHQMRPTAASLILQPPPGIRTDANVSRWERAIPINVSPTAQYHPRAGQVSPFGYQIPSNRSKDANVGPSVISHAAADEGSRTGIKGSGILSSINASGGVSERISERNPSGLLPSGRKQKSVTHISEPESSIPPSRHGLTSASRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYLPKSAVRPSPGESCMPSGENETGVSSNFVLRREFRGRLPVTGSSSHGFGTGDRISVAPG 406
[Close]
BLAST of XM_017399458.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZV93 (Tify domain-containing protein {ECO:0000259|PROSITE:PS51320})

HSP 1 Score: 374.785 bits (961), Expect = 3.150e-125
Identity = 219/408 (53.68%), Postives = 263/408 (64.46%), Query Frame = 0
 
Query:    1 MALLQMMAHTHNNNNNTHTDDIAQDVKPTVFHDFLSK--GSDLLPPAGAA-------------PPASAASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGG--PRRPQDEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSI-FHQAADEGSRTGMKGSGILSSINVSGGTSDRN----APSASNQNSGNRIAETESST--NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQTPFSPG 384
            MA+L MMA + +N N +     A +VKPT+FHDFLS+   SD  P A  A                 A+S GG RGPIS+TSDL SE+   NH EGVPFYG R D +GPEI++R   +KRS+ +SG++GS RD   QM P S E+SH+MKM R  GG  PRR  +EE F  MH  RP S SL+LQ  T  R D + S+WERA PI+VGP   Y     QV PFGYQ  S + KD+N GPSI F  AADEGSRTG+KGSGILSSIN SGG S++      PS S Q S   I+E ESS   +Q G     RQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWST +   S ++P   E  +P  ENETG++ N V  REFR R  +TG+SSHG  + ++   +PG
Sbjct:    1 MAVLLMMAQSKSNANTS-----ADEVKPTIFHDFLSRNCASDSSPAAKTAGDVRLSEASQSASASLGASSGGGGRGPISTTSDLGSERQVSNHLEGVPFYGPRSDFSGPEISNRLAGSKRSNSDSGFMGSFRDGFPQMGPESSESSHLMKMLRNVGGERPRRSHEEEMFFSMHSARPASASLILQPPT-GRTDASFSRWERAIPINVGPTAQYPPRASQVAPFGYQVPSNKSKDANAGPSIIFQAAADEGSRTGIKGSGILSSINASGGVSEKTPSGMLPSGSKQKSMTHISEPESSIPPSQHGLTSAGRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYLSKSAVKPSHGESCMPSGENETGVSSNFVLRREFRGRLPVTGSSSHGFGTGDRISVAPG 402
[Close]
BLAST of XM_017399458.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZTY1 (Tify domain-containing protein {ECO:0000259|PROSITE:PS51320})

HSP 1 Score: 372.859 bits (956), Expect = 3.550e-124
Identity = 218/410 (53.17%), Postives = 260/410 (63.41%), Query Frame = 0
 
Query:    1 MALLQMMAHTHNNNNNTHTDDIAQDVKPTVFHDFLSK--GSDLLPPAGAA-------------PPASAASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGG--PRRPQDEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSI-FHQAADEGSRTGMKGSGILSSINVSGGTSDRN----APSASNQNSGNRIAETESST--NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQTPFSPGNI 386
            MA+L MMA + +N N +     A +VKPT+FHDFLS+   SD  P A  A                 A+S GG RGPIS+TSDL SE+   NH EGVPFYG R D +GPEI++R   +KRS+ +SG++GS RD   QM P S E+SH+MKM R  GG  PRR  +EE F  MH  RP S SL+LQ  T  R D + S+WERA PI+VGP   Y     QV PFGYQ  S + KD+N GPSI F  AADEGSRTG+KGSGILSSIN SGG S++      PS S Q S   I+E ESS   +Q G     RQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWST +   S ++P   E  +P  ENETG+  N   P EFR R   TG+SSHG  + ++   +PG  
Sbjct:    1 MAVLLMMAQSKSNANTS-----ADEVKPTIFHDFLSRNCASDSSPAAKTAGDVRLSEASQSASASLGASSGGGGRGPISTTSDLGSERQVSNHLEGVPFYGPRSDFSGPEISNRLAGSKRSNSDSGFMGSFRDGFPQMGPESSESSHLMKMLRNVGGERPRRSHEEEMFFSMHSARPASASLILQPPT-GRTDASFSRWERAIPINVGPTAQYPPRASQVAPFGYQVPSNKSKDANAGPSIIFQAAADEGSRTGIKGSGILSSINASGGVSEKTPSGMLPSGSKQKSMTHISEPESSIPPSQHGLTSAGRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYLSKSAVKPSHGESCMPSGENETGVFSNFALPHEFRGRLPATGSSSHGFGTGDRISVAPGGF 404
[Close]
BLAST of XM_017399458.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A687 (Tify domain-containing protein {ECO:0000259|PROSITE:PS51320})

HSP 1 Score: 362.073 bits (928), Expect = 1.249e-119
Identity = 220/447 (49.22%), Postives = 264/447 (59.06%), Query Frame = 0
 
Query:    1 MALLQMMAHTHNNNNNTHTDDIAQDVKPTVFHDFLSK-------------GSDLLPPAGAAPPASAASSGGP-RGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMK----------------------------------------MFRGTGG--PRRPQDEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPS-IFHQAADEGSRTGMKGSGILSSINVSGGTSDRN----APSASNQNSGNRIAETESST--NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQTPFSPG 384
            MA++ MMA +  +N NT TD+    VKPT+FHDFL +             G   LP A  +  AS  +S G  RGPIS+TSDL SE+  GNH EGVPFYG R D +GPEI++R    KRS+ +SG++GS RD   Q  P S E+SH+MK                                        M R  GG  PRR  +EE F  MHP RPTS SL+LQ   S R D N S+WER  PI+VGP   Y +  GQV PFG+Q  S R KD+N GPS IF  AADEGSRTG+KGSGILSSIN S G S++      PS S Q S   I+E ESS   ++ G     RQMTIFYGGQAHVFDDVHPNKAD+IMALAGSNGGSWST +   S +RP   E  +P  ENETG+  N V PREFR R  +TG+SSHG  + ++   +PG
Sbjct:    1 MAVMLMMAQS-KSNANTSTDE----VKPTIFHDFLGRNCASESSPATKTAGDIRLPEASQSASASVGASSGGGRGPISTTSDLGSERQVGNHLEGVPFYGPRSDFSGPEISNRLAGTKRSNSDSGFMGSFRDGFPQKGPESFESSHLMKVHSNAMFIFFLSHSYVRQKPIYIMVVLFIFSDSGSLVQIQMLRNVGGERPRRSHEEEMFFSMHPARPTSASLILQ-PPSGRTDANVSRWERGIPINVGPTAQYPTRAGQVAPFGHQVPSNRSKDANAGPSVIFQVAADEGSRTGIKGSGILSSINASAGVSEKTPSGMLPSGSKQKSAAHISEPESSIPPSRHGLTSAGRQMTIFYGGQAHVFDDVHPNKADIIMALAGSNGGSWSTTYLPKSGVRPSHDESFMPSGENETGVFRNFVLPREFRARLPVTGSSSHGFGTGDRISVAPG 441
[Close]
BLAST of XM_017399458.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7GZ24 (Tify domain-containing protein {ECO:0000259|PROSITE:PS51320})

HSP 1 Score: 353.214 bits (905), Expect = 8.411e-117
Identity = 201/394 (51.02%), Postives = 249/394 (63.20%), Query Frame = 0
 
Query:    7 MAHTHNNNNNTHTDDIAQDVKP--TVFHDFLSKG----------SDLLPPAGAAPPASA---ASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGGPR--RPQDEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSIFHQAADEGSRTGMKGSGILSSINVSGGTSDRNAP----SASNQNSGNRIAETESST-NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQ 378
            MAH  +N + + T   A +VKP  T FHDFL KG            ++ P+ A+P AS    ASSGG RGPIS+TSDL SE+  GNH+EGVPFYGLR +L+GPE ++R +  KRS+ +S  +G +RD    ++P +LE+SH+ K+ R  GG R  RPQD+E    MHP RP   SL+ Q + + R DVNASKW+R  P++VGP L Y      V+PFGYQ  S+RF D+N GPS   QAADEGSRTG+KGSGILSSIN SGG SDR+      S + Q S    ++ ESS   +QG +    QMTIFYGGQAHVFD+VHPNKADVIM+LAGSNGGSWST +    T RP   E  LP  ENET    N    RE   R S     +HG  S + 
Sbjct:    1 MAHIQSNKSVSGTATEADEVKPAATTFHDFLGKGYTQDSSPAMSGRVVLPSEASPSASVSLGASSGGGRGPISTTSDLGSERVVGNHFEGVPFYGLRGELSGPETSNRLSGTKRSNSDS-LMGLTRDKFAMLRPDALESSHMQKLLRNAGGERHGRPQDQEMSFVMHPLRPLHPSLISQPSATGRTDVNASKWDRVIPVNVGPTLQYPPRASHVLPFGYQSSSSRFGDANAGPSNISQAADEGSRTGIKGSGILSSINASGGISDRSLSGLPLSGAKQKSTLHFSDLESSNPCRQGSSPAGSQMTIFYGGQAHVFDNVHPNKADVIMSLAGSNGGSWSTTYAPKPTARPSTGENYLPKAENETTKGNNLALIRELHGRSSGKAGFTHGFGSGDH 393
[Close]
BLAST of XM_017399458.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q372 ((Protein TIFY like {ECO:0000313|EMBL:PSS01161.1}))

HSP 1 Score: 350.132 bits (897), Expect = 8.024e-116
Identity = 199/364 (54.67%), Postives = 235/364 (64.56%), Query Frame = 0
 
Query:   25 DVKPTVFHDFLSKGSDLLPPAG-AAPPASAASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGGPRRPQ--DEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSIFHQAA-DEGSRTGMKGSGILSSINVSGGTSDRNAP----SASNQNSGNRIAETESST--NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQ 378
            +V PT+FHDFL  G   +P +      AS A SGG RGPIS+ SDL SE+   NH EGVPFY  R DLTG EI++RF  NKRS+ +S + GSSRD   ++ P SL+  H+MKM R  GG R  Q  DE    GM+P RPT  + +LQ  + +R D   SKWERA P+ V P++ Y    GQVVP+  Q  S RFKD+N GPS+  QAA DEGS TG+KGSGILSSIN   G SD N      S S Q SG   +E ESST  ++ G    SRQMTIFYGG AHVFDDVHPNKADVI+ALAGSNGGSWST      +  PPP E  +PG +NET MA N    REFR R S+TG SSHG  S +Q
Sbjct:   14 EVNPTIFHDFL--GRTCVPDSSPVVAEASPAVSGGGRGPISAASDLGSERHVANHLEGVPFYDPRSDLTGTEISNRFIGNKRSNSDSAFKGSSRDGFPKVGPDSLDGVHLMKMLRSEGGERSRQSHDEAMLFGMNPMRPTPTTRILQPPSGSRTDATVSKWERAMPLHVSPMMQYHPRMGQVVPYS-QIPSNRFKDANAGPSVLSQAAADEGSCTGIKGSGILSSINAGSGVSDLNPSGVLMSGSKQKSGTHNSEPESSTPPSRHGLTSASRQMTIFYGGHAHVFDDVHPNKADVILALAGSNGGSWSTTMYGPKSAAPPPVESHIPGGDNETRMASNFASSREFRRRLSVTGTSSHGFGSGDQ 374
[Close]
BLAST of XM_017399458.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1CGQ2 ((Protein TIFY 8 {ECO:0000313|EnsemblPlants:PGSC0003DMT400067114}))

HSP 1 Score: 350.132 bits (897), Expect = 1.496e-115
Identity = 200/394 (50.76%), Postives = 246/394 (62.44%), Query Frame = 0
 
Query:    7 MAHTHNNNNNTHTDDIAQDVKP--TVFHDFLSKG----------SDLLPPAGAAPPASA---ASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGGPRR--PQDEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSIFHQAADEGSRTGMKGSGILSSINVSGGTSDRNAP----SASNQNSGNRIAETESST-NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQ 378
            MAH  +N + + T   A +VKP  T FHDFL KG            ++ P+ A+P AS    ASSGG RGPIS+TSDL SE+  GNH+EGVPFYGLR +L+GPE ++R    KRS+ +S  +GS+RD    ++  +LE+SH+ K+ R  GG RR  PQD+E    MHP RP   SL+ Q + + R DVNASKW+R  P++VGP L Y      V+PFGYQ  S RF D+N GPS   QAADEGSRTG+KGSGILSSIN SGG SDR+      S + Q S    ++ ESS   +QG +    QMTIFYGGQAHVFD+VHPNKADVIM+LAGSNGGSWST +      RP   E   P  ENET    N    REF  R S     +HG  S + 
Sbjct:    1 MAHIQSNKSVSGTATAADEVKPAATTFHDFLGKGYPQDSSPGMSGRVVLPSEASPSASVSLGASSGGGRGPISTTSDLGSERVVGNHFEGVPFYGLRGELSGPETSNRLLGTKRSNSDS-LMGSTRDKFAMLRSDALESSHMQKLLRNAGGERRGRPQDQEMSFVMHPMRPLHASLISQPSATGRTDVNASKWDRVIPVNVGPTLQYPPRASHVLPFGYQSSSNRFADANAGPSNISQAADEGSRTGIKGSGILSSINASGGISDRSLSGVPLSGAKQKSTLHFSDLESSNPCRQGSSPAGSQMTIFYGGQAHVFDNVHPNKADVIMSLAGSNGGSWSTTYAPKPAARPSTGENYSPKAENETTKGNNLALIREFHGRSSGKAGFTHGFGSGDH 393
[Close]
BLAST of XM_017399458.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2CGM1 (Tify domain-containing protein {ECO:0000259|PROSITE:PS51320})

HSP 1 Score: 348.977 bits (894), Expect = 4.832e-115
Identity = 199/394 (50.51%), Postives = 245/394 (62.18%), Query Frame = 0
 
Query:    7 MAHTHNNNNNTHTDDIAQDVKP--TVFHDFLSKG----------SDLLPPAGAAPPASA---ASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGGPR--RPQDEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSIFHQAADEGSRTGMKGSGILSSINVSGGTSDRNAP----SASNQNSGNRIAETESST-NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQ 378
            MAH  +N   + T   A +VKP  T FHDFL KG            ++ P+ A+P AS    ASSGG RGPIS+TSDL SE+  GNH+EGVPFYGLR +L+GPE ++R +  KRS+ +S  +G +RD    ++P +LE+SH+ K+ R  GG R  RPQD+E    MHP RP   SL+ Q + + R DVNASKW+R  P++VGP L Y      V+PFGYQ  S+RF D+N GPS   QAADEGSRTG+KGSGILSSIN SGG SDR       S +   S    ++ ESS   +QG +    QMTIFYGGQAHVFD+VHPNKADVIM+LAGSNGGSWST +      RP   E  LP  ENET    N    RE   R S     +HG  S + 
Sbjct:    1 MAHIQSNKTVSGTATEADEVKPVATTFHDFLGKGYTQDSSPAMSGRVVLPSEASPSASVSLGASSGGGRGPISTTSDLGSERVVGNHFEGVPFYGLRGELSGPETSNRLSGTKRSNSDS-LMGLTRDKFAMLRPDALESSHMQKLLRNAGGERHGRPQDQEMSFVMHPLRPLHPSLISQPSVTGRTDVNASKWDRVIPVNVGPTLQYPPRASHVLPFGYQSSSSRFGDANAGPSNISQAADEGSRTGIKGSGILSSINASGGISDRGLSGVPLSGAKHKSTLHFSDLESSNPCRQGSSPAGSQMTIFYGGQAHVFDNVHPNKADVIMSLAGSNGGSWSTTYAPKPAARPSTGENYLPKAENETTKGNNLALIRELHGRSSGKAGFTHGFGSGDH 393
[Close]
BLAST of XM_017399458.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0INW3 (Tify domain-containing protein {ECO:0000259|PROSITE:PS51320})

HSP 1 Score: 345.51 bits (885), Expect = 9.995e-114
Identity = 198/394 (50.25%), Postives = 244/394 (61.93%), Query Frame = 0
 
Query:    7 MAHTHNNNNNTHTDDIAQDVKP--TVFHDFLSKG----------SDLLPPAGAAPPAS---AASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGGPRR--PQDEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSIFHQAADEGSRTGMKGSGILSSINVSGGTSDRNAP----SASNQNSGNRIAETESST-NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQ 378
            MA   +N + + T   A +VKP  T FHDFL KG            ++ P+ A+P AS    ASSGG RGPIS+TSDL SE+  GNH+EGVPFYGLR +L+GPE ++R    KRS+ +S  +GS+RD    ++  +LE+SH+ K+ R  GG RR  PQD+E    MHP RP   SL+ Q + + R DVNASKW+R  P++VGP L Y      V+PFGYQ  S RF D+N GPS   QAADEGSRTG+KGSGILSSIN SGG SDR+      S + Q S    ++ ESS   +QG +    QMTIFYGGQAHVFD+VHPNKADVIM+LAGSNGGSWST +      RP   E   P  ENET    N    RE   R S     +HG  S + 
Sbjct:    1 MAXIQSNKSXSXTXTAADEVKPAATTFHDFLGKGYPQDSSPGMSGRVVLPSEASPSASVSLGASSGGGRGPISTTSDLGSERVVGNHFEGVPFYGLRGELSGPETSNRLLGTKRSNSDS-LMGSTRDKFAMLRSDALESSHMQKLLRNAGGERRGRPQDQEMSFVMHPMRPLHASLISQPSATGRTDVNASKWDRXIPVNVGPTLQYPPRASHVLPFGYQSSSNRFGDANAGPSNISQAADEGSRTGIKGSGILSSINASGGISDRSLSGVPLSGAKQKSTLHFSDLESSNPCRQGSSPAGSQMTIFYGGQAHVFDNVHPNKADVIMSLAGSNGGSWSTTYAPKPAARPSTGENYSPKAENETTKGNNLALIRELHGRSSGKAGFTHGFGSGDH 393
[Close]
BLAST of XM_017399458.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0GCI3 ((TIFY domain protein 8 {ECO:0000313|EMBL:GFZ08408.1}))

HSP 1 Score: 344.354 bits (882), Expect = 1.751e-113
Identity = 197/364 (54.12%), Postives = 233/364 (64.01%), Query Frame = 0
 
Query:   25 DVKPTVFHDFLSKGSDLLPPAG-AAPPASAASSGGPRGPISSTSDLASEKDAGNHYEGVPFYGLRRDLTGPEIASRFTRNKRSSLESGYLGSSRDVLQQMQPHSLETSHIMKMFRGTGGPRRPQ--DEEAFLGMHPTRPTSDSLVLQQATSARADVNASKWERATPISVGPVLPYSSLKGQVVPFGYQHLSTRFKDSNVGPSIFHQAA-DEGSRTGMKGSGILSSINVSGGTSDRNAP----SASNQNSGNRIAETESST--NQQGEALVSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTDFTQNSTIRPPPTEIELPGTENETGMAINSVFPREFRHRFSMTGNSSHGIVSSNQ 378
            +V PT+FHDFL  G   +P +      AS A SGG RGPIS+ SDL SE+   NH EGVPFY  R D TG EI++RF  NKR + +S + GSSRD   ++ P SL+  H+MKM R  GG R  Q  DE    GM+P RPT  + +LQ  + +R D   SKWERA P+ V P++ Y    GQVVP+  Q  S RFKD+N GPS+  QAA DEGS TG+KGSGILSSIN   G SD N      S S Q SG   +E ESST  ++ G    SRQMTIFYGG AHVFDDVHPNKADVI+ALAGSNGGSWST      +  PPP E  +PG +NET MA N    REFR R S+TG SSHG  S +Q
Sbjct:   14 EVNPTIFHDFL--GRTCVPDSSPVVAEASPAVSGGGRGPISAASDLGSERHVANHLEGVPFYDPRSDPTGTEISNRFIGNKRRNSDSAFKGSSRDGFPKVGPDSLDGVHLMKMLRSEGGERSRQSHDEAMLFGMNPMRPTPTTRILQPPSGSRTDATVSKWERAMPLHVSPMMQYHPRVGQVVPY-SQIPSNRFKDANAGPSVLSQAAADEGSCTGIKGSGILSSINAGSGVSDLNPSGVLMSGSKQKSGTHNSEPESSTPPSRHGLTSASRQMTIFYGGHAHVFDDVHPNKADVILALAGSNGGSWSTTMYGPKSAAPPPVESHIPGGDNETRMASNFASSREFRRRLSVTGTSSHGFGSGDQ 374
Match NameStatsDescription
A0A5B6ZWS8E-Value: 5.274e-132, PID: 54.99Tify domain-containing protein {ECO:0000259|PROSIT... [more]
A0A5B6ZV93E-Value: 3.150e-125, PID: 53.68Tify domain-containing protein {ECO:0000259|PROSIT... [more]
A0A5B6ZTY1E-Value: 3.550e-124, PID: 53.17Tify domain-containing protein {ECO:0000259|PROSIT... [more]
A0A5J5A687E-Value: 1.249e-119, PID: 49.22Tify domain-containing protein {ECO:0000259|PROSIT... [more]
A0A3Q7GZ24E-Value: 8.411e-117, PID: 51.02Tify domain-containing protein {ECO:0000259|PROSIT... [more]
A0A2R6Q372E-Value: 8.024e-116, PID: 54.67(Protein TIFY like {ECO:0000313|EMBL:PSS01161.1})[more]
M1CGQ2E-Value: 1.496e-115, PID: 50.76(Protein TIFY 8 {ECO:0000313|EnsemblPlants:PGSC000... [more]
A0A6N2CGM1E-Value: 4.832e-115, PID: 50.51Tify domain-containing protein {ECO:0000259|PROSIT... [more]
A0A0V0INW3E-Value: 9.995e-114, PID: 50.25Tify domain-containing protein {ECO:0000259|PROSIT... [more]
A0A7J0GCI3E-Value: 1.751e-113, PID: 54.12(TIFY domain protein 8 {ECO:0000313|EMBL:GFZ08408.... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.