Resource Type:
Polypeptide
Name:
XM_017403150.1
Identifier:
XM_017403150.1-protein
Sequence:
MAVVVRCSATIRRPNSGSHSLGTDSLPAKTHLSGRKLMNLQQDVTEQYSL
KPTYLVGRKQSYADSVIDHVSPHQIQSSSLALIITNALMFYTPLEALAET
CESARSVLEMPVLLFVALVGATVGGLLARQRKGELNRLNEQLRQINAALR
RQAKIESYAPALSYAPVGARIAESEVIIDPRKQELVSHLKTGKNYLRNQD
PEKAFVEFKTALELAQNLKDSIEEKKAARGLGASLQRQGKYREAIKYHSL
VLTISEREKEDSGNTEAFGAIADCYTELGDLERAGFYYDQYIARLETD
Sequence Length:
298
Sequence Checksum:
a7ecf673b6da40bc75b06494d42b0a13
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017403150.1, derives from mRNA, XM_017403150.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017403150.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017403150.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A6Z7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50833.1}))
HSP 1 Score: 406.757 bits (1044), Expect = 8.075e-141
Identity = 214/337 (63.50%), Postives = 243/337 (72.11%), Query Frame = 0
Match: A0A5B7A6Z7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50833.1}))
HSP 1 Score: 406.757 bits (1044), Expect = 8.075e-141
Identity = 214/337 (63.50%), Postives = 243/337 (72.11%), Query Frame = 0
Query: 1 MAVVVRCSATIRRPNSGSH---------------------------------SLGTDSLPAKTH--LSGRKLMNLQQDVTEQYSLKPTYLVGRKQSYADSVIDHVSPHQ----IQSSSLALIITNALMFYTPLEALAETCESARSVLEMPVLLFVALVGATVGGLLARQRKGELNRLNEQLRQINAALRRQAKIESYAPALSYAPVGARIAESEVIIDPRKQELVSHLKTGKNYLRNQDPEKAFVEFKTALELAQNLKDSIEEKKAARGLGASLQRQGKYREAIKYHSLVLTISEREKEDSGNTEAFGAIADCYTELGDLERAGFYYDQYIARLETD 298
MAVVVRCS NSGS S G + P +TH L G + M+L D T+ LK + Q D++++ + H+ I+ ++A I+TNALM P +ALAETCE+ +SV +MP+LLFVAL+GATVGGLLARQR+GEL +LNEQLRQINAALRRQAKIESYAP LSYAPVG RI E+EVI+DPRKQELVSHLKTGKN+LRNQDPEKAFVEFKTALELAQ LKD IEEKKAARGLGASLQRQGKYREAIKYHS+VL ISERE EDSGNTEA GAIADCYTELGDLERA +YD YIARLETD
Sbjct: 1 MAVVVRCSCVFPCSNSGSFAPRTWRSDQFSSKFYVSGKLASLPFKVKSFISSSGGASNGPYETHQALLGSQSMHLGPDGTKFSLLKENCDIDHMQPVDDTIVESFAAHEGMVLIRFPAIAFIVTNALMLTAPFQALAETCEADKSVFDMPLLLFVALIGATVGGLLARQRRGELQKLNEQLRQINAALRRQAKIESYAPTLSYAPVGGRILENEVIVDPRKQELVSHLKTGKNFLRNQDPEKAFVEFKTALELAQKLKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLAISEREGEDSGNTEAHGAIADCYTELGDLERAAKFYDNYIARLETD 337
BLAST of XM_017403150.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UYN4 ((Uncharacterized protein {ECO:0000313|EMBL:OAY36377.1}))
HSP 1 Score: 399.823 bits (1026), Expect = 3.650e-138
Identity = 208/326 (63.80%), Postives = 239/326 (73.31%), Query Frame = 0
Match: A0A2C9UYN4 ((Uncharacterized protein {ECO:0000313|EMBL:OAY36377.1}))
HSP 1 Score: 399.823 bits (1026), Expect = 3.650e-138
Identity = 208/326 (63.80%), Postives = 239/326 (73.31%), Query Frame = 0
Query: 1 MAVVVRCSATIRRPNSGSHSLGTDSLPAKTHLSGRK----------------------LMNLQQDVTEQYSLKPTYL--VGRKQSYADSVIDHVSPHQ----IQSSSLALIITNALMFYTPLEALAETCESARSVLEMPVLLFVALVGATVGGLLARQRKGELNRLNEQLRQINAALRRQAKIESYAPALSYAPVGARIAESEVIIDPRKQELVSHLKTGKNYLRNQDPEKAFVEFKTALELAQNLKDSIEEKKAARGLGASLQRQGKYREAIKYHSLVLTISEREKEDSGNTEAFGAIADCYTELGDLERAGFYYDQYIARLETD 298
MA V+RC+ I RP S + + +HL+G+ L + E L+P V + + + +S HQ +SS+LA +TNALM+ P EALAETCE+ S MP+LLFVAL+GATVGGLLARQR+GEL RLNEQLRQINAALRRQAKIESYAP+LSYAPVG+RIAE+EVI+DPRKQEL+S LKTGKN+LRNQDPEKAFVEFKTALELAQ+LKD IEEKKAARGLGASLQRQGKYREAIKYHSLVL ISERE E SGNTEA+GAIADCYTELGDLERAG +YD+YIARLETD
Sbjct: 1 MAGVIRCACFIARPYSVTSPSSDLVISGNSHLTGKSGSLLFKVEKFASSSVNASSVPSLFRHELTRGESVHLRPAVQGEVVQVSPICEKFFEELSAHQGILKCRSSALAFFVTNALMWIAPFEALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRLNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIAENEVIVDPRKQELISRLKTGKNFLRNQDPEKAFVEFKTALELAQSLKDPIEEKKAARGLGASLQRQGKYREAIKYHSLVLAISEREGESSGNTEAYGAIADCYTELGDLERAGKFYDKYIARLETD 326
BLAST of XM_017403150.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5F6M9 ((N-terminal acetyltransferase A, auxiliary subunit {ECO:0000313|EMBL:PON93453.1}))
HSP 1 Score: 396.741 bits (1018), Expect = 2.435e-137
Identity = 207/308 (67.21%), Postives = 242/308 (78.57%), Query Frame = 0
Match: A0A2P5F6M9 ((N-terminal acetyltransferase A, auxiliary subunit {ECO:0000313|EMBL:PON93453.1}))
HSP 1 Score: 396.741 bits (1018), Expect = 2.435e-137
Identity = 207/308 (67.21%), Postives = 242/308 (78.57%), Query Frame = 0
Query: 1 MAVVVRCSATIRRPNSGSHSLGTDSLPA-KTHLSGR---------KLMNLQQDVTEQYSLKPTYLVGRKQSYADSVIDHVSPHQIQSSSLALIITNALMFYTPLEALAETCESARSVLEMPVLLFVALVGATVGGLLARQRKGELNRLNEQLRQINAALRRQAKIESYAPALSYAPVGARIAESEVIIDPRKQELVSHLKTGKNYLRNQDPEKAFVEFKTALELAQNLKDSIEEKKAARGLGASLQRQGKYREAIKYHSLVLTISEREKEDSGNTEAFGAIADCYTELGDLERAGFYYDQYIARLETD 298
MAVVVRCS + RP+ S +D L A K++L G+ KL +L +D T L+ +++V S S+ +Q+ ++ I+NALMF P +ALAETCE+ S+ MPVLL VALVGATVGGLLARQR+GEL RLNEQLRQINAALRRQAKIESYAPALSYAP+G RIAE+EVI+D RKQEL+S LK GKN+LRNQDPEKAF+EFKTALELAQNLKD+IEEKKAARGLGASLQRQGKYREAIKYHS+VL ISERE+EDSG+TEA+GAIADCYTELGDLERA +YDQYI+RLE D
Sbjct: 1 MAVVVRCSCFLTRPSGSRRSPPSDQLSAVKSYLPGKLASFSYKVEKLKSLFKD-TGNGVLEVSHMVAPPTS--TSICQ--GNNQVNFPAVGFFISNALMFTAPFKALAETCEADNSLFNMPVLLAVALVGATVGGLLARQRRGELERLNEQLRQINAALRRQAKIESYAPALSYAPIGGRIAENEVIVDSRKQELISRLKAGKNFLRNQDPEKAFLEFKTALELAQNLKDAIEEKKAARGLGASLQRQGKYREAIKYHSMVLDISEREREDSGSTEAYGAIADCYTELGDLERAAKFYDQYISRLEKD 303
BLAST of XM_017403150.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QF98 ((Protein FLUORESCENT IN BLUE LIGHT like {ECO:0000313|EMBL:PSS07303.1}))
HSP 1 Score: 394.43 bits (1012), Expect = 5.733e-136
Identity = 209/328 (63.72%), Postives = 242/328 (73.78%), Query Frame = 0
Match: A0A2R6QF98 ((Protein FLUORESCENT IN BLUE LIGHT like {ECO:0000313|EMBL:PSS07303.1}))
HSP 1 Score: 394.43 bits (1012), Expect = 5.733e-136
Identity = 209/328 (63.72%), Postives = 242/328 (73.78%), Query Frame = 0
Query: 1 MAVVVRCSATIRRPNSGS---HSLGTDSLPAKTHLSGRKLMNLQQDVT-EQYSLKPTYLVGR---------KQSYADSV-------IDHVSP------HQI----QSSSLALIITNALMFYTPLEALAETCESARSVLEMPVLLFVALVGATVGGLLARQRKGELNRLNEQLRQINAALRRQAKIESYAPALSYAPVGARIAESEVIIDPRKQELVSHLKTGKNYLRNQDPEKAFVEFKTALELAQNLKDSIEEKKAARGLGASLQRQGKYREAIKYHSLVLTISEREKEDSGNTEAFGAIADCYTELGDLERAGFYYDQYIARLETD 298
MAVVVRCS + R +S S + TD K H+ +KL++ D + E++ +L + K S++ +DH + HQ+ +S S+ALII NALM TP EALAE CE+ +SV MP+LLFVAL+GATVGGLLARQR+GEL RLNEQLRQINAALRRQAKIESYAP LSYAPVG RI ESEVI+DPRKQEL+S LK GKN+LRNQDPEKAF+EFKTALELAQ+L D EEKKAARGLGASLQRQGKYREAIKYHS+VL ISERE EDSGNTEA+GAIADCYTELGDLE A +YD YIARLE+D
Sbjct: 1 MAVVVRCSCVLLRRDSASFDSRTSTTDQFHLKRHVLVKKLVSSLDDASNEEFEAHQVFLDNQSMLMGVNDVKTSFSKGTCNIGHTQLDHATSLEGLVAHQVMLLGRSPSVALIIANALMLITPFEALAEACEADQSVFNMPLLLFVALIGATVGGLLARQRRGELKRLNEQLRQINAALRRQAKIESYAPTLSYAPVGGRIQESEVIVDPRKQELISRLKLGKNFLRNQDPEKAFLEFKTALELAQSLSDPTEEKKAARGLGASLQRQGKYREAIKYHSMVLAISEREGEDSGNTEAYGAIADCYTELGDLEGAAKFYDNYIARLESD 328
BLAST of XM_017403150.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5B492 ((N-terminal acetyltransferase A, auxiliary subunit {ECO:0000313|EMBL:PON43589.1}))
HSP 1 Score: 392.889 bits (1008), Expect = 6.498e-136
Identity = 208/308 (67.53%), Postives = 241/308 (78.25%), Query Frame = 0
Match: A0A2P5B492 ((N-terminal acetyltransferase A, auxiliary subunit {ECO:0000313|EMBL:PON43589.1}))
HSP 1 Score: 392.889 bits (1008), Expect = 6.498e-136
Identity = 208/308 (67.53%), Postives = 241/308 (78.25%), Query Frame = 0
Query: 1 MAVVVRCSATIRRPNSGSHSLGTDSLPA-KTHLSGR---------KLMNLQQDVTEQYSLKPTYLVGRKQSYADSVIDHVSPHQIQSSSLALIITNALMFYTPLEALAETCESARSVLEMPVLLFVALVGATVGGLLARQRKGELNRLNEQLRQINAALRRQAKIESYAPALSYAPVGARIAESEVIIDPRKQELVSHLKTGKNYLRNQDPEKAFVEFKTALELAQNLKDSIEEKKAARGLGASLQRQGKYREAIKYHSLVLTISEREKEDSGNTEAFGAIADCYTELGDLERAGFYYDQYIARLETD 298
MAVVVRCS + RPNS +D L A K+ L G+ KL +L +D T L+ +++V S S+ +Q+ ++ I+NALMF P +ALAETCE+ S+ MPVLL VALVGATVGGLLARQR+GEL RLNEQLRQINAALRRQAKIESYAPALSYAP+G RIAE+EVI+D RKQEL+S LK GKN+LRNQDPEKAF+EFKTALELAQNLKD+IEEKKAARGLGASLQRQGKYREAIKYHS+VL ISERE+EDSG+TEA+GAIADCYTELGDLERA +YDQYI+RLE D
Sbjct: 1 MAVVVRCSCFLTRPNSPP----SDQLSAVKSFLPGKLASFSYKVEKLKSLFKD-TGNGVLEVSHVVAPPTS--TSICQ--GNNQVNFPAVGFFISNALMFTAPFKALAETCEADNSLFNMPVLLAVALVGATVGGLLARQRRGELERLNEQLRQINAALRRQAKIESYAPALSYAPIGGRIAENEVIVDSRKQELISRLKAGKNFLRNQDPEKAFLEFKTALELAQNLKDAIEEKKAARGLGASLQRQGKYREAIKYHSMVLDISEREREDSGSTEAYGAIADCYTELGDLERAAKFYDQYISRLEKD 299
BLAST of XM_017403150.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EBU8 ((Uncharacterized protein {ECO:0000313|EMBL:THG13076.1}))
HSP 1 Score: 390.193 bits (1001), Expect = 3.569e-134
Identity = 207/339 (61.06%), Postives = 242/339 (71.39%), Query Frame = 0
Match: A0A4S4EBU8 ((Uncharacterized protein {ECO:0000313|EMBL:THG13076.1}))
HSP 1 Score: 390.193 bits (1001), Expect = 3.569e-134
Identity = 207/339 (61.06%), Postives = 242/339 (71.39%), Query Frame = 0
Query: 1 MAVVVRCSAT--IRRPNSGS----HSLGTDSLPAKTHLSG---------------------------------RKLMNLQQDVTEQYSLKPTYLVGRKQSYADSVIDHVSP--HQIQSSSLALIITNALMFYTPLEALAETCESARSVLEMPVLLFVALVGATVGGLLARQRKGELNRLNEQLRQINAALRRQAKIESYAPALSYAPVGARIAESEVIIDPRKQELVSHLKTGKNYLRNQDPEKAFVEFKTALELAQNLKDSIEEKKAARGLGASLQRQGKYREAIKYHSLVLTISEREKEDSGNTEAFGAIADCYTELGDLERAGFYYDQYIARLETD 298
MAVVVRCS++ + RP+S + S + +P K H+ G R ++ DV S V + Y ++ D V+ ++S ++ALI+TNALM P EALAETCE+ RSV +MP+LLFVALVGATVGGLLARQR+GEL RLNEQLRQINAALRRQAKIESYAP LSYAPVG RI E+EVI+DPRK EL+SHLK+GKN+LRNQDPEKAFVEFK ALELAQ+L D IEEKKAARGLGASLQRQGKYREAIKYHS+VL ISERE EDSGNTEA+GAIADCYTELGDLERA +YD YI+RL++D
Sbjct: 1 MAVVVRCSSSFVLLRPHSAAVFHRRSSSSGQIPLKLHVFGKLASIPFKVKKFLSSFGEASIEEFEARQPLLGSRSMLTGVNDVNTSVSEGTCDTVHAQVDYDTTLEDLVAQVMAPVRSPAVALIVTNALMLSMPFEALAETCEADRSVFDMPLLLFVALVGATVGGLLARQRRGELERLNEQLRQINAALRRQAKIESYAPTLSYAPVGGRIQENEVIVDPRKHELISHLKSGKNFLRNQDPEKAFVEFKAALELAQSLGDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLAISEREGEDSGNTEAYGAIADCYTELGDLERAAKFYDNYISRLQSD 339
BLAST of XM_017403150.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0G059 ((Tetratricopeptide repeat (TPR)-like superfamily protein {ECO:0000313|EMBL:GFZ04325.1}))
HSP 1 Score: 388.652 bits (997), Expect = 1.811e-133
Identity = 212/345 (61.45%), Postives = 241/345 (69.86%), Query Frame = 0
Match: A0A7J0G059 ((Tetratricopeptide repeat (TPR)-like superfamily protein {ECO:0000313|EMBL:GFZ04325.1}))
HSP 1 Score: 388.652 bits (997), Expect = 1.811e-133
Identity = 212/345 (61.45%), Postives = 241/345 (69.86%), Query Frame = 0
Query: 1 MAVVVRCSATIRRPNSGSHSLGTDS---------LPAKTHLSGR----------------------------------KLMNLQQDVTEQYSLKPTYLVGRKQSYADSVIDHVSPHQI----QSSSLALIITNALMFYTPLEALAETCESARSVLEMPVLLFVALVGATVGGLLARQRKGELNRLNEQLRQINAALRRQAKIESYAPALSYAPVGARIAESEVIIDPRKQELVSHLKTGKNYLRNQDPEKAFVEFKTALELAQNLKDSIEEKKAARGLGASLQRQGKYREAIKYHSLVLTISEREKEDSGNTEAFGAIADCYTELGDLERAGFYYDQYIARLETD 298
MAVVVRCS + +S S T + + KTH SG+ LM + DV +S K T +G Q ++ + HQ+ +S S+ALII NALM TP+EALAETCE+ +SV MP+LLFVAL+GATVGGLLARQR+GEL RLNEQLRQINAALRRQAKIESYAPALSYAPVG RI ESEVI+DPRKQEL+S LK GKN+LRNQDPEKAF+EFKTALELAQ+L D EEKKAARGLGASLQRQGKYREAIKYHS+VL ISERE EDSGNTEA+GAIADCYTELGDLE A +YD YIARLE+D
Sbjct: 1 MAVVVRCSCVLLCRDSASFDRRTSTTDQFHLKRHVLDKTHFSGKFASIPFKVKKLVSSLGDAANEEFEAHQVFLDNQSMLMGVN-DVKTSFS-KGTCNIGHTQLDHAITLEGLVAHQVMLLGRSPSVALIIANALMLITPIEALAETCEADQSVFNMPLLLFVALIGATVGGLLARQRRGELKRLNEQLRQINAALRRQAKIESYAPALSYAPVGGRIQESEVIVDPRKQELISRLKLGKNFLRNQDPEKAFLEFKTALELAQSLSDPTEEKKAARGLGASLQRQGKYREAIKYHSMVLAISEREGEDSGNTEAYGAIADCYTELGDLEGAAKFYDNYIARLESD 343
BLAST of XM_017403150.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A6NEL9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF2323582.1}))
HSP 1 Score: 383.645 bits (984), Expect = 2.035e-133
Identity = 183/216 (84.72%), Postives = 201/216 (93.06%), Query Frame = 0
Match: A0A6A6NEL9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF2323582.1}))
HSP 1 Score: 383.645 bits (984), Expect = 2.035e-133
Identity = 183/216 (84.72%), Postives = 201/216 (93.06%), Query Frame = 0
Query: 83 IITNALMFYTPLEALAETCESARSVLEMPVLLFVALVGATVGGLLARQRKGELNRLNEQLRQINAALRRQAKIESYAPALSYAPVGARIAESEVIIDPRKQELVSHLKTGKNYLRNQDPEKAFVEFKTALELAQNLKDSIEEKKAARGLGASLQRQGKYREAIKYHSLVLTISEREKEDSGNTEAFGAIADCYTELGDLERAGFYYDQYIARLETD 298
NALM+ TP EALAETCE+ S MP+LLFVAL+GATVGGLLARQR+GEL RLNEQLRQINAALRRQAKIESYAP+LSYAP+G+RIAE+EVI+DPRKQEL+S LKTGKN+LRNQDPEKAFVEFKTAL+LAQ+LKDSIEEKKAARGLGASLQRQGKYREAIKYHSLVL ISERE E+SGNTEA+GAIADCYTELGDLERAG +YD+YIARLETD
Sbjct: 3 FFVNALMWTTPFEALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELERLNEQLRQINAALRRQAKIESYAPSLSYAPIGSRIAENEVIVDPRKQELISRLKTGKNFLRNQDPEKAFVEFKTALDLAQSLKDSIEEKKAARGLGASLQRQGKYREAIKYHSLVLAISEREGENSGNTEAYGAIADCYTELGDLERAGKFYDKYIARLETD 218
BLAST of XM_017403150.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4ASA5 ((protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like {ECO:0000313|RefSeq:XP_015901740.1}))
HSP 1 Score: 385.571 bits (989), Expect = 5.927e-133
Identity = 203/317 (64.04%), Postives = 236/317 (74.45%), Query Frame = 0
Match: A0A6P4ASA5 ((protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like {ECO:0000313|RefSeq:XP_015901740.1}))
HSP 1 Score: 385.571 bits (989), Expect = 5.927e-133
Identity = 203/317 (64.04%), Postives = 236/317 (74.45%), Query Frame = 0
Query: 1 MAVVVRCSATIRRPNSGSHSLG-------TDSLPAKTHLSGRKLMNLQQDVTEQYSLKPTYLVGRKQSYADSVIDHVSPHQIQSSS------------LALIITNALMFYTPLEALAETCESARSVLEMPVLLFVALVGATVGGLLARQRKGELNRLNEQLRQINAALRRQAKIESYAPALSYAPVGARIAESEVIIDPRKQELVSHLKTGKNYLRNQDPEKAFVEFKTALELAQNLKDSIEEKKAARGLGASLQRQGKYREAIKYHSLVLTISEREKEDSGNTEAFGAIADCYTELGDLERAGFYYDQYIARLETD 298
MAVVVRCS + +HS+G +D KT+L G K L SLK L+ S+A + HQ+ SS+ +A I+NALMF P +ALAETCE+ S+ MP+LL VAL+GATVGGLLARQR+GEL RLNEQLRQIN ALRRQAKIESYAP+LSYAPV RI+E+EVI+DPRKQEL+S LK+GKN+LRNQ+ EKAF EFKTALELAQ++KD IEEKKAARGLGASLQRQGKYREAIKYHS+VL ISERE+EDSGNTEA+GAIADCYTELGDLERAG +YD YIARLE+D
Sbjct: 1 MAVVVRCSCFL------THSVGNSLRIPPSDQFSVKTYLPG-KFTTL--------SLKAEKLIS---SFARCSNESFEIHQLSSSTYCQGNIQINFPAMAFCISNALMFTVPFKALAETCEAENSLFNMPILLSVALIGATVGGLLARQRRGELERLNEQLRQINQALRRQAKIESYAPSLSYAPVAGRISENEVIVDPRKQELISRLKSGKNFLRNQELEKAFTEFKTALELAQDVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLAISEREREDSGNTEAYGAIADCYTELGDLERAGKFYDNYIARLESD 299
BLAST of XM_017403150.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: W9S9G7 ((Protein FLUORESCENT IN BLUE LIGHT {ECO:0000313|EMBL:EXC32295.1}))
HSP 1 Score: 385.956 bits (990), Expect = 1.650e-132
Identity = 195/309 (63.11%), Postives = 233/309 (75.40%), Query Frame = 0
Match: W9S9G7 ((Protein FLUORESCENT IN BLUE LIGHT {ECO:0000313|EMBL:EXC32295.1}))
HSP 1 Score: 385.956 bits (990), Expect = 1.650e-132
Identity = 195/309 (63.11%), Postives = 233/309 (75.40%), Query Frame = 0
Query: 1 MAVVVRCSATIRRPNSGSHSLGTDSLPAKTHLSGRKLMNLQQDVTEQYSLKPTYLVGRKQSYADSVID--HVSPH-------QIQSSSLALIITNALMFYTPLEALAETCESARSV--LEMPVLLFVALVGATVGGLLARQRKGELNRLNEQLRQINAALRRQAKIESYAPALSYAPVGARIAESEVIIDPRKQELVSHLKTGKNYLRNQDPEKAFVEFKTALELAQNLKDSIEEKKAARGLGASLQRQGKYREAIKYHSLVLTISEREKEDSGNTEAFGAIADCYTELGDLERAGFYYDQYIARLETD 298
MAVV RCS + P + S +D K++L G+ + +S + L+ + + + + H+SP QI ++A+ ++N LMF TP +ALAETCE+ S+ + MP+LL +L+GATVGGLLARQR+GEL RLNEQLRQINAALRRQAKIESYAP+LSYAPVG RI E+EVI+D RK EL+SHLKTGKN+LRNQ+PEKAFVEFKTALELAQNLKD IEEKKAARGLGASLQRQGKYREAIKYHS+VL ISEREKE+SGNTEAFGAIADCY ELGDLERA +YD YI RL+ D
Sbjct: 44 MAVVARCSCFLTHPINSRRSPLSDQFSVKSYLPGK---------SASFSFEVEKLISSSKDTHNGLFNICHISPSSKCQGNIQINFPAVAIFVSNTLMFSTPFKALAETCEADNSLFNMNMPLLLAFSLIGATVGGLLARQRRGELERLNEQLRQINAALRRQAKIESYAPSLSYAPVGGRIPENEVIVDSRKHELISHLKTGKNFLRNQEPEKAFVEFKTALELAQNLKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLDISEREKEESGNTEAFGAIADCYAELGDLERAAKFYDNYIGRLDKD 343
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7A6Z7 | E-Value: 8.075e-141, PID: 63.50 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5083... [more] |
| A0A2C9UYN4 | E-Value: 3.650e-138, PID: 63.80 | (Uncharacterized protein {ECO:0000313|EMBL:OAY3637... [more] |
| A0A2P5F6M9 | E-Value: 2.435e-137, PID: 67.21 | (N-terminal acetyltransferase A, auxiliary subunit... [more] |
| A0A2R6QF98 | E-Value: 5.733e-136, PID: 63.72 | (Protein FLUORESCENT IN BLUE LIGHT like {ECO:00003... [more] |
| A0A2P5B492 | E-Value: 6.498e-136, PID: 67.53 | (N-terminal acetyltransferase A, auxiliary subunit... [more] |
| A0A4S4EBU8 | E-Value: 3.569e-134, PID: 61.06 | (Uncharacterized protein {ECO:0000313|EMBL:THG1307... [more] |
| A0A7J0G059 | E-Value: 1.811e-133, PID: 61.45 | (Tetratricopeptide repeat (TPR)-like superfamily p... [more] |
| A0A6A6NEL9 | E-Value: 2.035e-133, PID: 84.72 | (Uncharacterized protein {ECO:0000313|EMBL:KAF2323... [more] |
| A0A6P4ASA5 | E-Value: 5.927e-133, PID: 64.04 | (protein FLUORESCENT IN BLUE LIGHT, chloroplastic-... [more] |
| W9S9G7 | E-Value: 1.650e-132, PID: 63.11 | (Protein FLUORESCENT IN BLUE LIGHT {ECO:0000313|EM... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |