Resource Type:
Polypeptide
Name:
XM_017403591.1
Identifier:
XM_017403591.1-protein
Sequence:
MNDLSMPSLELTSSQHFFQLHRISFGSQKLYHSYDRGLSFLWRSFKISTT
QRAFSVSHFKMRCDRVLINAVATLEPKIVNEKNAHDGHCTLHIHSDSETL
QRAEHQSTSDDELDDREKLRRKRISKANKGKSPWNKGRKHSPETRQRIKE
KTRLAMQDPKVRMKLINLGHTQSKETRVKIGVAVRIGWKKRREKLMLQET
CHVDWQNLIAEASRRGLTGEEELQWDSYNILDEQLEKEWVESVQQRKRAP
RPKGSKRAPKSAEQRKRISEAIAAKWADPAYRDRVYTGLSKYHGTPIGAD
NPRRRQKRASTSTSILKKKKNNVTDNPAGNERKASTPRSRIKRSNAPIYK
DPLASSKLQMIKTIRADRENKKAEAVRRAKLLIAEAENAAKALELAASKS
PLAQASLIETRKLIDEAIQSIESIEGSFDENEPDSPLSLSDVEDLKSRGF
VTKDQIEVNGASLSNFDDISDSAIGKFNLQQLLNHEDENLPSSSYDVDFM
NDMDYLKGLLDNETDLSQLEPLNKPSSLTHQLDLLAPNGTTAKHGNPVPN
GAKSELLELKKPPKSINSSKEKPPKSTNTVKKWVRGKLVEVTEGD
Sequence Length:
595
Sequence Checksum:
90b8566c7824dd425594151157235194
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017403591.1, derives from mRNA, XM_017403591.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017403591.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017403591.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AF77 (IENR2 domain-containing protein {ECO:0000259|Pfam:PF07460})
HSP 1 Score: 572.007 bits (1473), Expect = 0.000e+0
Identity = 334/617 (54.13%), Postives = 415/617 (67.26%), Query Frame = 0
Match: A0A5B7AF77 (IENR2 domain-containing protein {ECO:0000259|Pfam:PF07460})
HSP 1 Score: 572.007 bits (1473), Expect = 0.000e+0
Identity = 334/617 (54.13%), Postives = 415/617 (67.26%), Query Frame = 0
Query: 6 MPSLELTSSQHFFQLHRISFGSQKLYH------SYDRGLSFLWRSFKISTTQRAFSVSHFKMRCDRVLINAVATLEPKI-VNEKNAHDGHCTLHIHSDSETLQRAEHQSTSDDE-LDDREKLRRKRISKANKGKSPWNKGRKHSPETRQRIKEKTRLAMQDPKVRMKLINLGHTQSKETRVKIGVAVRIGWKKRREKLMLQETCHVDWQNLIAEASRRGLTGEEELQWDSYNILDEQLEKEWVESVQQRKRAP-RPKGSKRAPKSAEQRKRISEAIAAKWADPAYRDRVYTGLSKYHGTPIGADNPRRRQKRASTS--TSILKKKKNNVTDNPAGNERKASTPRSRIKRSNAPIYKDPLASSKLQMIKTIRADR---ENKKAEAVRRAKLLIAEAENAAKALELAASKSPLAQASLIETRKLIDEAIQSIESIE-GSFDENEPDSPLSLSD------VE---DLKSRGFVTKDQIEVNGA-SLSNFDDISDSAIGKFNLQQLLNHEDENLPSSSYDVDFMNDMD--YLKGLLDNETDLSQLEPLNKPSSLTHQLDLLAPNGTTAKHGNPVPNGAKSELLELKKPPKSINSSKEKPPKSTNTVKKWVRGKLVEVTEGD 595
MP L++ ++Q FQ H + G++ L H +Y+ L W+ F+I + F++ +MR ++INAVATLEPK V + H+GH L + DS + S++D E LD+REKLRR RISKANKG +PWNKGRKHSPETRQRI+E+T LAMQ+PKV+MKL+NLGH QSKETR+KIGV VR+GW++RREKLMLQE C+ +WQNLIAEA+RRG GEEELQWDSY ILDE LE+EW+ES++QRK+ P R KG++RAPKS EQR++ISEAI+AKWA+P YRDRVY+ LSKYHGT +GA+ RR+ I KKK D+ AGNE K+ + RSR++RSN +YKDPLASSKL+MIK IRA R + KK EA++RAK+LIAEAE AAKALE+AA +SPLAQASLIETRKLI EAIQSIESIE G D +E SL+ VE D G DQ E+NG +L + D I D GKF LQ LLN +DE LP+SS F+N + Y G D S L+ + K S+ T QLD L NG P+PNGAK + + +E PP S KKWVRGKLVEV EGD
Sbjct: 1 MPLLDIATAQPSFQNHVYTIGAKTLLHGKFIFGNYNT-LPSTWKPFRIPNKAKNFNLGRIEMRRCGLMINAVATLEPKCSVQSNDQHEGHHNLELDIDSRSPVIQPRSSSADSEKLDEREKLRRMRISKANKGNTPWNKGRKHSPETRQRIRERTWLAMQNPKVKMKLVNLGHAQSKETRIKIGVGVRMGWERRREKLMLQEGCYFEWQNLIAEATRRGFVGEEELQWDSYKILDEHLEQEWLESIEQRKKWPTRLKGNRRAPKSLEQRRKISEAISAKWAEPGYRDRVYSALSKYHGTLVGAERKPRRKPSGERQPLKRIPAKKKPIDADSSAGNETKSQSQRSRLRRSNMALYKDPLASSKLEMIKNIRAQRAAAKTKKTEAIKRAKVLIAEAEKAAKALEVAAMRSPLAQASLIETRKLIAEAIQSIESIETGQVDSHENGRHPSLASNGVVNHVEKEKDAGIEGLSQTDQREINGTQALESSDSIKDFNFGKFALQDLLNGKDELLPTSSSAYGFLNGKEKLYQMGSSDYGFPPSDLDSMIKQSNFTKQLDQLELNGNNRHEKKPLPNGAKFQ-----------SRKEETPPNSITITKKWVRGKLVEVAEGD 605
BLAST of XM_017403591.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ADN6 (IENR2 domain-containing protein {ECO:0000259|Pfam:PF07460})
HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0
Identity = 322/616 (52.27%), Postives = 405/616 (65.75%), Query Frame = 0
Match: A0A5B7ADN6 (IENR2 domain-containing protein {ECO:0000259|Pfam:PF07460})
HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0
Identity = 322/616 (52.27%), Postives = 405/616 (65.75%), Query Frame = 0
Query: 6 MPSLELTSSQHFFQLHRISFGSQKLYHSY-----DRGLSFLWRSFKISTTQRAFS--VSHFKMRCDRVLINAVATLEPKIVNEKNAHDGHCTLHIHSDSETLQRAEHQSTSDDELDDREKLRRKRISKANKGKSPWNKGRKHSPETRQRIKEKTRLAMQDPKVRMKLINLGHTQSKETRVKIGVAVRIGWKKRREKLMLQETCHVDWQNLIAEASRRGLTGEEELQWDSYNILDEQLEKEWVESVQQRKRAP-RPKGSKRAPKSAEQRKRISEAIAAKWADPAYRDRVYTGLSKYHGTPIGADNPRRRQKRASTS--TSILKKKKNNVTDNPAGNERKASTPRSRIKRSNAPIYKDPLASSKLQMIKTIRADR---ENKKAEAVRRAKLLIAEAENAAKALELAASKSPLAQASLIETRKLIDEAIQSIESI----EGSFDENEPDSPLS---LSDVE---DLKSRGFVTKDQIEVNGA-SLSNFDDISDSAIGKFNLQQLLNHEDENLPSSSYDVDFMNDMD--YLKGLLDNETDLSQLEPLNKPSSLTHQLDLLAPNGTTAKHGNPVPNGAKSELLELKKPPKSINSSKEKPPKSTNTVKKWVRGKLVEVTEGD 595
MP L++ +Q FQ H F ++ L H ++ L+ +SF+I ++ F+ + +M+ ++ AVATLEPK + ++ H + L I S S +Q ++ S +ELD++EKLRR RISKANKG +PWNKGRKHSPE QRI+E+T LAMQDPKV+MKL+NLGH QSKETR+KIGV VR+GW++RREKLMLQE C+ +WQNLIAEA+RRG GEEELQWDSY ILDE LE+EW+ES++QRK+ P R KG++RAPKS EQR++ISEAI+AKWA+P YRDRVY+ LSKYHGT +GA+ RR+ I KKK D+ AGNE K+ + RSR++RSN +YKDPLASSKL+MIK I+A R E KK EAV RAKLLIAEAE AAKALE+AA SPLAQASLIETRKLI EAIQSIESI GS+ S S ++ VE D G Q E+N +L + D I DS GKFN Q LLN +DE L + S D +N + Y G+ D + S L+ + K S T QL L NG + P+PNGAK + + +E PP S KKWVRGKLVEV EGD
Sbjct: 1 MPLLDIAFAQPSFQNHAYKFRARTLIHCKFIFGNEKRLASPCKSFRIPNKEKNFNFNLGRIEMQRSELVTRAVATLEPK-CSVQSHHHHNLELDIDSRSPVIQ-PQYSSEDSEELDEKEKLRRMRISKANKGNTPWNKGRKHSPEIIQRIRERTWLAMQDPKVKMKLVNLGHAQSKETRIKIGVGVRMGWERRREKLMLQEGCYFEWQNLIAEATRRGFVGEEELQWDSYKILDEHLEQEWLESIEQRKKWPTRLKGNRRAPKSLEQRRKISEAISAKWAEPGYRDRVYSALSKYHGTLVGAERKPRRKPSGERQPLKRIPAKKKPIDADSSAGNETKSQSQRSRLRRSNMALYKDPLASSKLEMIKNIKAQRVAAETKKTEAVERAKLLIAEAEKAAKALEVAAMSSPLAQASLIETRKLIAEAIQSIESIGTGQAGSYQNGRHPSFASNGLVNHVEKEKDAGIEGLSQTHQREINSIQALESSDGIKDSNFGKFNFQDLLNGKDEQLLTRSSDHGLLNGKERVYQIGVSDYGSTPSGLDRMIKQPSFTKQLGQLELNGNSRHEKKPLPNGAKFQ-----------SGKEETPPNSITITKKWVRGKLVEVAEGD 603
BLAST of XM_017403591.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QF82 ((Protein FAM133B like {ECO:0000313|EMBL:PSS07274.1}))
HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0
Identity = 305/611 (49.92%), Postives = 397/611 (64.98%), Query Frame = 0
Match: A0A2R6QF82 ((Protein FAM133B like {ECO:0000313|EMBL:PSS07274.1}))
HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0
Identity = 305/611 (49.92%), Postives = 397/611 (64.98%), Query Frame = 0
Query: 6 MPSLELTSSQHFFQLHRISFGSQKLYHSY-----DRGLSFLWRSFKISTTQRAFSVSHFKMRCDRVLINAVATLEPKIVNEKNA-HDGHCTLHIHSDSETLQRAEHQSTSDD---ELDDREKLRRKRISKANKGKSPWNKGRKHSPETRQRIKEKTRLAMQDPKVRMKLINLGHTQSKETRVKIGVAVRIGWKKRREKLMLQETCHVDWQNLIAEASRRGLTGEEELQWDSYNILDEQLEKEWVESVQQRKRAPRPKGSKRAPKSAEQRKRISEAIAAKWADPAYRDRVYTGLSKYHGTPIGAD-NPRRR---QKRASTSTSILKKKKNNVTDNPAGNERKASTPRSRIKRSNAPIYKDPLASSKLQMIKTIRADR---ENKKAEAVRRAKLLIAEAENAAKALELAASKSPLAQASLIETRKLIDEAIQSIESIE-GSFDENEPDS-----PLSLSDVEDLKSRGFV----TKDQIEVNG--ASLSNFDDISDSAIGKFNLQQLLNHEDENLPSSSYDVDFMNDMDYLKGLLDNETDLSQLEPLNKPSSLTHQLDLLAPNGTTAKHGNPVPNGAKSELLELKKPPKSINSSKEKPPKSTNTVKKWVRGKL 588
MP L++ ++Q F H + G++ L H+ +R L+F W+S+ + +++ + ++I AVAT EPK E N H+ L D + EHQS+ +D ELD+REKLRRK+IS ANKG +PWNKGRKHS ET QRI+E+TRLAMQ+PKVRMKL+ LGH QS+ETR+KIG VR+GW++RREKLMLQETC DWQNLIAEASRRG GEEELQWDSY ILDEQLE+EW+ESV+QRK+ PR KGSKRAPKS EQR++ISEAI+AKWADP +R++V + LS+YHG P+GA+ PRRR +++ T +SI KK K+ TDN + ++ + R+ +S P+YKDPLASSKL+MIK IRA R E KK EA+ +AKLLIAEAE AA ALE+AA +PLAQASL ETRKLI EAIQSI+SIE G + +E D P+ L + + K+ + D+ +VNG A +S+ DI D +FN Q LLN +DE LP+SS +N + + +N+ +L P +PSS T Q+ NG + +P G LE KE P ST KKWVRG+L
Sbjct: 1 MPLLDIATAQPSFHNHIFTLGAKTLLHNRILFGNERSLAFGWKSYHVPKRGENYNLGSIWTQRSVLVIRAVATFEPKYSVESNGGHESRDMLRRGVDFGSTLGIEHQSSREDDSEELDEREKLRRKKISAANKGNTPWNKGRKHSAETLQRIRERTRLAMQNPKVRMKLVKLGHAQSEETRIKIGAGVRMGWERRREKLMLQETCCFDWQNLIAEASRRGFVGEEELQWDSYKILDEQLEQEWLESVEQRKKLPRAKGSKRAPKSLEQRRKISEAISAKWADPVFREKVCSALSRYHGVPVGAERKPRRRPSGERQPRTQSSIKKKGKD--TDNSSRIVTQSQKHQIRLTKSKKPLYKDPLASSKLEMIKNIRAQRAATETKKTEAIEQAKLLIAEAEKAANALEVAAMTNPLAQASLTETRKLIAEAIQSIQSIEIGQINSHEDDQHPAIPPVELVNHAEKKTYPGIHCLEQTDRGKVNGTQAMVSSKSDIKDFGFREFNFQDLLNGKDEGLPTSSTGYGLLNGKNEVYRTGNND---HRLHPFVEPSSFTEQMSQFESNGKIGQENELLPGGDDDVQLE----------KKEISPNSTPVTKKWVRGRL 596
BLAST of XM_017403591.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R0J6 ((Protein FAM133B like {ECO:0000313|EMBL:PSS18156.1}))
HSP 1 Score: 530.406 bits (1365), Expect = 1.312e-180
Identity = 307/612 (50.16%), Postives = 398/612 (65.03%), Query Frame = 0
Match: A0A2R6R0J6 ((Protein FAM133B like {ECO:0000313|EMBL:PSS18156.1}))
HSP 1 Score: 530.406 bits (1365), Expect = 1.312e-180
Identity = 307/612 (50.16%), Postives = 398/612 (65.03%), Query Frame = 0
Query: 6 MPSLELTSSQHFFQLHRISFGSQKLYHSY-----DRGLSFLWRSFKISTTQRAFSVSHFKMRCDRVLINAVATLEPKIVNEKN-AHDGHCTLHIHSDSETLQRAEHQSTSDD---ELDDREKLRRKRISKANKGKSPWNKGRKHSPETRQRIKEKTRLAMQDPKVRMKLINLGHTQSKETRVKIGVAVRIGWKKRREKLMLQETCHVDWQNLIAEASRRGLTGEEELQWDSYNILDEQLEKEWVESVQQRKRAPRPKGSKRAPKSAEQRKRISEAIAAKWADPAYRDRVYTGLSKYHGTPIGAD-NPRRR---QKRASTSTSILKKKKNNVTDNPAGNERKASTPRSRIKRSNAPIYKDPLASSKLQMIKTIRADR---ENKKAEAVRRAKLLIAEAENAAKALELAASKSPLAQASLIETRKLIDEAIQSIESIE-GSFDENEPDSPLSLSDVEDLKSR-------GFVTKDQIE---VNG--ASLSNFDDISDSAIGKFNLQQLLNHEDENLPSSSYDVDFMNDMDYLKGLLDNETDLSQLEPLNKPSSLTHQLDLLAPNGTTAKHGNPVPNGAKSELLELKKPPKSINSSKEKPPKSTNTVKKWVRGKL 588
MP L++ ++Q F H + G++ L H+ DR L+F W+S++++ + +S+ + ++I AVATLEPK E N HD L DS + EHQS+ ++ ELD+REKLRRK+IS ANKG +PWNKGRKHS ET QRI+E+TRLAMQ+PKVR+KL+ +GH QS+ETRVKIG VR+GW++RREKLMLQE+C DWQNLIAEASR G GEEELQWDSY ILDEQLE+EW+ESV+QRK+ PR KGSKRAPKS EQR++ISE I+AKWADP +R++V + LS+YHG PIG + NPRRR +++ T + I KK K+ TDN + ++ + R+ +S P+YKDPLASSKL+MIK IRA R E KK EA+ +AKLLIAEAE AA ALELAA +PLAQASL ETRKLI EAIQSI+SIE G +E D S++ V DL + G DQ + VNG A +S+ DI D G+FN Q LLN +DE LP+SS D +N + + ++ L P KPS T +L NG + + G + +L++ KE P ST KKWV G+L
Sbjct: 1 MPLLDIATAQPSFHNHIFTLGAKTLLHNKILFGNDRSLAFGWKSYQVTERGKNYSLGSIGTQRSVLVIRAVATLEPKYSVESNEGHDAQHMLRRGVDSGSTSGIEHQSSREEDSEELDEREKLRRKKISAANKGNTPWNKGRKHSAETLQRIREQTRLAMQNPKVRLKLVKMGHAQSEETRVKIGSGVRMGWERRREKLMLQESCCFDWQNLIAEASRSGFVGEEELQWDSYKILDEQLEQEWLESVEQRKKIPRAKGSKRAPKSLEQRRKISETISAKWADPVFREKVCSALSRYHGVPIGGERNPRRRPSGERQPRTQSPIKKKVKD--TDNSSRIVTQSQKHQIRLTKSKKPLYKDPLASSKLEMIKNIRAQRAATETKKTEAIEQAKLLIAEAEKAANALELAAMTNPLAQASLTETRKLIAEAIQSIQSIEIGQISSHEDDQHPSITPV-DLVNHAEKETYPGIHCLDQNDRGKVNGNLAMVSSKSDIKDFGFGEFNFQDLLNGKDEGLPTSSTDYGLLNGKNEVYRTGNSNYGLP---PSGKPSIFTERLSQFELNGKISHEKELLLAGDEVQLVK-----------KEIPSNSTPVTKKWVCGRL 595
BLAST of XM_017403591.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AG33 (IENR2 domain-containing protein {ECO:0000259|Pfam:PF07460} (Fragment))
HSP 1 Score: 517.694 bits (1332), Expect = 3.312e-176
Identity = 308/573 (53.75%), Postives = 383/573 (66.84%), Query Frame = 0
Match: A0A5B7AG33 (IENR2 domain-containing protein {ECO:0000259|Pfam:PF07460} (Fragment))
HSP 1 Score: 517.694 bits (1332), Expect = 3.312e-176
Identity = 308/573 (53.75%), Postives = 383/573 (66.84%), Query Frame = 0
Query: 6 MPSLELTSSQHFFQLHRISFGSQKLYHS------YDRGLSFLWRSFKISTTQRAFSVSHFKMRCDRVLINAVATLEPKI-VNEKNAHDGHCTLHIHSDSETLQRAEHQSTSDDE-LDDREKLRRKRISKANKGKSPWNKGRKHSPETRQRIKEKTRLAMQDPKVRMKLINLGHTQSKETRVKIGVAVRIGWKKRREKLMLQETCHVDWQNLIAEASRRGLTGEEELQWDSYNILDEQLEKEWVESVQQRKRAP-RPKGSKRAPKSAEQRKRISEAIAAKWADPAYRDRVYTGLSKYHGTPIGADNPRRRQKRASTS--TSILKKKKNNVTDNPAGNERKASTPRSRIKRSNAPIYKDPLASSKLQMIKTIRADR---ENKKAEAVRRAKLLIAEAENAAKALELAASKSPLAQASLIETRKLIDEAIQSIESI----EGSFDENEPDSPLS---LSDVE---DLKSRGFVTKDQIEVNGA-SLSNFDDISDSAIGKFNLQQLLNHEDENLPSSSYDVDFMNDMD--YLKGLLDNETDLSQLEPLNKPSSLTHQLDLLAPNGTTAKHGNPVPNG 551
MP L++ ++Q FQ H + G++ L H Y+ L W+ F+I + F++ +MR ++INAVATLEPK V + H+GH L + DS + S++D E LD+REKLRR RISKANKG +PWNKGRKHSPE QRI+E+T LAMQDPKV+MKL+NLGH QSKETR+KIGV VR+GW++RREKLMLQE C+ +WQNLIAEA+RRG GEEELQWDSY ILDE LE+EW+ES++QRK+ P R KG++RAPKS EQR++ISEAI+AKWA+P YRDRVY+ LSKYHGT +GA+ RR+ I KKK D+ AGNE K+ + RSR++RSN +YKDPLASSKL+MIK I+A R E KK EAV RAKLLIAEAE AAKALE+AA SPLAQASLIETRKLI EAIQSIESI GS+ S S ++ VE D G Q E+N +L + D I DS GKFN Q LLN +DE L + S D +N + Y G+ D + S L+ + K S T QL L NG + +H P G
Sbjct: 1 MPLLDIATAQPSFQNHVYTIGAKTLLHGKFIFGNYNT-LPSTWKPFRIPNKAKNFNLGRIEMRRCGLMINAVATLEPKCSVQSNDQHEGHHNLELDIDSRSPVIQPRSSSADSEKLDEREKLRRMRISKANKGNTPWNKGRKHSPEIIQRIRERTWLAMQDPKVKMKLVNLGHAQSKETRIKIGVGVRMGWERRREKLMLQEGCYFEWQNLIAEATRRGFVGEEELQWDSYKILDEHLEQEWLESIEQRKKWPTRLKGNRRAPKSLEQRRKISEAISAKWAEPGYRDRVYSALSKYHGTLVGAERKPRRKPSGERQPLKRIPAKKKPIDADSSAGNETKSQSQRSRLRRSNMALYKDPLASSKLEMIKNIKAQRVAAETKKTEAVERAKLLIAEAEKAAKALEVAAMSSPLAQASLIETRKLIAEAIQSIESIGTGQAGSYQNGRHPSFASNGLVNHVEKEKDAGIEGLSQTHQREINSIQALESSDGIKDSNFGKFNFQDLLNGKDEQLLTRSSDHGLLNGKERVYQIGVSDYGSTPSGLDRMIKQPSFTKQLGQLELNGNS-RHEKMRPPG 571
BLAST of XM_017403591.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7TZJ2 (IENR2 domain-containing protein {ECO:0000259|Pfam:PF07460})
HSP 1 Score: 516.538 bits (1329), Expect = 1.688e-175
Identity = 316/621 (50.89%), Postives = 403/621 (64.90%), Query Frame = 0
Match: D7TZJ2 (IENR2 domain-containing protein {ECO:0000259|Pfam:PF07460})
HSP 1 Score: 516.538 bits (1329), Expect = 1.688e-175
Identity = 316/621 (50.89%), Postives = 403/621 (64.90%), Query Frame = 0
Query: 6 MPSLELTSSQHFFQLHRISFGSQKLYHSYDRG---------LSFLWRSFKISTTQRAFSVSHFKMRCDRVLINAVATLEPKI-VNEKNAHDGHCTLHIHSDSETLQRAEHQSTSD-DELDDREKLRRKRISKANKGKSPWNKGRKHSPETRQRIKEKTRLAMQDPKVRMKLINLGHTQSKETRVKIGVAVRIGWKKRREKLMLQETCHVDWQNLIAEASRRGLTGEEELQWDSYNILDEQLEKEWVESVQQRKRAPRPKGSKRAPKSAEQRKRISEAIAAKWADPAYRDRVYTGLSKYHGTPIGADNPRRRQKRASTSTSILKKKKNNVTD---NPAGNERKASTPRSRIKRSNAPIYKDPLASSKLQMIKTIRADR---ENKKAEAVRRAKLLIAEAENAAKALELAASKSPLAQASLIETRKLIDEAIQSIESIEG---SFDENEPD----SPLSLSDVE---DLKSRGFVTKDQIEVNGAS--LSNFDDISDSAIGKFNLQQLLNHEDENLPSSS--YDVDFMNDMDYLKGLLDNETDLSQLEPLNKPSSLTHQLDLLAPNGTTAKHGNPVPNGAKSELLELKKPPKSINSSKEKPPKSTNTVKKWVRGKLVEVTEGD 595
MP L++ ++Q FQ H ++ +Q L H G L+ W+ F+I + F+V H + R + LI AVATLE K V ++ G+ L + DS S+ + ELD+RE+LRR RISKANKG +PWNKG+KHS ET QRI+E+T+LAMQDPKV+MKL+NLGH QS+ETRVKIGV VR+GW++RREK MLQETC+ +WQ+LIAEASRRG GEEELQWDSY+ILDEQLE+EW+ESV++RKR PRPKGSKRAPKS EQR++ISEAI+AKW+DPAYR+RV + L+KYHG P GA PR+ ++R S T + N T + AG+E K+ ++R+K+SN+P+YKDPLA+SKL+MIK IRA R E KK EA+ RA+LLIAEAE AAKALE+AA++SPLA ASL+ET+KLI EAIQSIESIE S EN D S + ++ VE D G DQ +VNG +S+ +D GKF Q LLN + E L +SS Y + + D+D L G T LD L PN + NP+PNG+K KP K + P S T KKWVRG+LVEV E D
Sbjct: 1 MPLLDIATAQPSFQNHLVTLSAQTLIHGKVSGKFASGPEKRLASAWKPFQI-PKKVDFNVGHLEARWGKFLIKAVATLEAKCSVQGEDGQKGYNNLPLGVDSRPPGNPIQSSSEEYSELDERERLRRMRISKANKGNTPWNKGKKHSAETLQRIRERTKLAMQDPKVKMKLVNLGHAQSEETRVKIGVGVRMGWQRRREKRMLQETCYFEWQSLIAEASRRGYAGEEELQWDSYDILDEQLEREWLESVEERKRMPRPKGSKRAPKSPEQRRKISEAISAKWSDPAYRERVCSALAKYHGIPEGA--PRKPRRRPSGDTQSTRSPANKTTSHILDSAGSETKSQNQKTRLKKSNSPMYKDPLANSKLEMIKNIRAQRVAAETKKTEAIERARLLIAEAEKAAKALEVAATRSPLAHASLMETKKLIAEAIQSIESIEAGQISSHENSRDPSFSSAVPVNHVEKEMDAGIEGLNQADQRKVNGTKTLVSSKNDNEGFDFGKFTWQDLLNGDMELLSTSSSGYGLSPL-DLDSLIG-------------------STKPLDQL-PNLNVEREDNPLPNGSKL------KPRK-----EAAPANSVTTTKKWVRGRLVEVAEED 586
BLAST of XM_017403591.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BES9 (IENR2 domain-containing protein {ECO:0000259|Pfam:PF07460})
HSP 1 Score: 503.827 bits (1296), Expect = 1.051e-170
Identity = 316/617 (51.22%), Postives = 395/617 (64.02%), Query Frame = 0
Match: A0A5J5BES9 (IENR2 domain-containing protein {ECO:0000259|Pfam:PF07460})
HSP 1 Score: 503.827 bits (1296), Expect = 1.051e-170
Identity = 316/617 (51.22%), Postives = 395/617 (64.02%), Query Frame = 0
Query: 6 MPSLELTSSQHFFQLHRISFGSQ-----KLYHSYDRGLSFLWRSFKISTTQRAFSVS--HFKMRCDRVLINAVATLEPKI-VNEKNAHDGHCTLHIHSDSET-LQRAEHQSTSDDELDDREKLRRKRISKANKGKSPWNKGRKHSP--ETRQRIKEKTRLAMQDPKVRMKLINLGHTQSKETRVKIGVAVRIGWKKRREKLMLQETCHVDWQNLIAEASRRGLTGEEELQWDSYNILDEQLEKEWVESVQQRKRAPRPKGSKRAPKSAEQRKRISEAIAAKWADPAYRDRVYTGLSKYHGTPIGAD-NPRRRQK--RASTSTSILKKKKNNVTDNPAGNERKASTPRSRIKRSNAPIYKDPLASSKLQMIKTIRADR---ENKKAEAVRRAKLLIAEAENAAKALELAASKSPLAQASLIETRKLIDEAIQSIESIEGSF---DENEPDSPLSLSDV-------EDLKSRGFVTKDQIEVNGASLSNFDDISDSAIGKFNLQQLLNHEDENLPSSSYDVDFMNDMDYLKGLLDNETDLSQLEPLNKPSSLTHQLDLLAPNGTTAKHGNPVPNGAKSELLELKKPPKSINSSKEKPPKSTNTVKKWVRGKLVEVTEGD 595
MP LE+ +Q FQ H +F ++ K ++ L+ W+SF+I ++ F+ + H +M+ ++I AVATLEPK V + H G L + DS + + R + +E+D++EKLRR RISKANKG +PWNKG+KHSP +T QRI+E+T LAMQ+PKV+MKL+NLGH QSKETRVKIGV VR+GW++RREKLMLQETC+ DWQNLIAEASRRG GEEELQWDSY ILDEQLE+EW+ESV+ RK+ PRPKGSKRAPKS EQR++ISEAI+AKWADP YRDRV + L+KYHGTP+GA+ PRR+ R S KKK + N AGNE K + R R++RSN P+YKDPLASSKL+MIK IRA R E KK EA+ RAKLLIAEAE AAKALE+AA +SPLAQASLIETRKLI EAIQSIESIE D N+ L+ + V +D + +G +Q E+NG S ++I FN + D P S D+D M + SSL Q+D L NG P PNG K + + +E PP S + KKWVRG+LVEV EGD
Sbjct: 1 MPLLEIAFAQPSFQNHVYTFRARSLINGKFIFGNEKTLASAWKSFRIPNKEKNFNFNFGHIEMQRSELVIRAVATLEPKFSVQSHDQHKGQHNLELDIDSRSPVIRPQSFGEDSEEVDEKEKLRRMRISKANKGNTPWNKGKKHSPGNKTVQRIRERTWLAMQNPKVKMKLVNLGHAQSKETRVKIGVGVRMGWERRREKLMLQETCYFDWQNLIAEASRRGFVGEEELQWDSYKILDEQLEQEWLESVELRKKMPRPKGSKRAPKSPEQRRKISEAISAKWADPGYRDRVCSALAKYHGTPVGAERKPRRKPSGDRQLRQRSPAKKKAIDAV-NFAGNETKNQSQRPRLRRSNMPLYKDPLASSKLEMIKNIRAQRAAAETKKTEAIERAKLLIAEAEKAAKALEVAAMRSPLAQASLIETRKLIAEAIQSIESIEIIQVDSDGNDRHPSLASNGVVNHVEKEKDTEIKGLSQPEQREINGTQAPE----SSNSIKDFN----FDSSDHGFPRS--DLDSMIEQ----------------------SSLKKQVDQLELNGNNRHEKMPRPNGTKFQ-----------SGKEETPPNSISITKKWVRGRLVEVAEGD 573
BLAST of XM_017403591.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4V3WLR0 (IENR2 domain-containing protein {ECO:0000259|Pfam:PF07460})
HSP 1 Score: 497.278 bits (1279), Expect = 1.197e-167
Identity = 306/626 (48.88%), Postives = 397/626 (63.42%), Query Frame = 0
Match: A0A4V3WLR0 (IENR2 domain-containing protein {ECO:0000259|Pfam:PF07460})
HSP 1 Score: 497.278 bits (1279), Expect = 1.197e-167
Identity = 306/626 (48.88%), Postives = 397/626 (63.42%), Query Frame = 0
Query: 7 PSLELTSSQHFFQLHRISFGSQKLYHSYDRGLSF-----LWRSFKISTTQRAFSVSHFKMRCDRVLINAVATLEPKIVNEKNA-HDGHCTLHIHSDSETLQRAEHQSTSDD--ELDDREKLRRKRISKANKGKSPWNKGRKHSPETRQRIKEKTRLAMQDPKVRMKLINLGHTQSKETRVKIGVAVRIGWKKRREKLMLQETCHVDWQNLIAEASRRGLTGEEELQWDSYNILDEQLEKEWVESVQQRKRAPRPKGSKRAPKSAEQRKRISEAIAAKWADP-----------AYRDRVYTGLSKYHGTPIGADNPRRRQKRASTSTSILK---KKKNNVTDNPAGNERKASTPRSRIKRSNAPIYKDPLASSKLQMIKTIRADR---ENKKAEAVRRAKLLIAEAENAAKALELAASKSPLAQASLIETRKLIDEAIQSIESIE-GSFDENEPDSPLSLSDVEDLKS---------RGFVTKDQIEVNGASL--SNFDDISDSAIGKFNLQQLLNHEDENLPSSSYDVDFMNDMDYLKGLLDNETDLSQLEPLNKPSSLTHQLDLLAPNGTTAKHGNPVPNGAKSELLELKKPPKSINSSKEKPPKSTNTVKKWVRGKLVEVTEGD 595
P+ + ++Q FQ H + +Q H+ + F L ++F + +V H +M+ ++I AVATLEPK + + N+ + GH L++ DS A++ S+ +D E+D+REKLRR RISKANKG +PWNKGRKHS ET+QRI+E+TRLAMQ PKV+MKL+NLGH QS+ETR+KIG+ VR+GW++RREKL LQETC+ +WQNLIAEASR+G GEEE QW+SY ILDEQLE+EW+ESV+QR++ RPKGSKRAPKS EQR++ISEAI+AKWADP AYRDRV T L KYHGTP+GA+ +R+ R+S ++ KKK N TDN GN ++ R+R+ RSN P++KDPLASSKL+MIK IRA+R E KK EA+ RAKLLIAEAE AAKALE AA+KSPLAQASLIETR LI EAIQSI+SIE G D + S++ E + +G +D E+NG S+ D +D GKFN LLN ++E +S D S+L+ + K S T QL L NG NGA+ + + +E PP S KKWVRG+LVEV +GD
Sbjct: 31 PTTYIATAQSSFQNHIFTLRAQTFLHN---KIVFGNEKRLAKTFLVPNKGININVGHIEMQRSVLVIRAVATLEPKCLVQSNSEYKGHDNLNLGVDSRNTSVAQYDSSYEDSEEVDEREKLRRMRISKANKGNTPWNKGRKHSAETKQRIRERTRLAMQHPKVKMKLVNLGHAQSEETRMKIGIGVRMGWERRREKLKLQETCYFEWQNLIAEASRKGFVGEEEKQWNSYKILDEQLEQEWLESVEQRRKMARPKGSKRAPKSLEQRRKISEAISAKWADPVRAYVAFSAENAYRDRVCTALHKYHGTPVGAERKPKRRPRSSERQPRIQNPTKKKANDTDNSTGNVTESQKRRTRL-RSNMPLFKDPLASSKLEMIKNIRAERAAAETKKTEAIERAKLLIAEAEKAAKALEAAATKSPLAQASLIETRNLIAEAIQSIQSIEIGQIDSHGNGRHPSIASAELVNQAEKGNNPGVQGLSQRDNGEINGTQTVESSKSDYNDFGFGKFNFHDLLNGKEELYQTSMSDYGL---------------PPSELDGIIKQCSFTEQLSQLELNG----------NGAEYQ-----------SRKEETPPNSIPVAKKWVRGRLVEVVDGD 616
BLAST of XM_017403591.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A3BT09 ((RING-H2 finger protein ATL60-like {ECO:0000313|EMBL:KAE8719966.1}))
HSP 1 Score: 485.723 bits (1249), Expect = 1.007e-163
Identity = 293/573 (51.13%), Postives = 374/573 (65.27%), Query Frame = 0
Match: A0A6A3BT09 ((RING-H2 finger protein ATL60-like {ECO:0000313|EMBL:KAE8719966.1}))
HSP 1 Score: 485.723 bits (1249), Expect = 1.007e-163
Identity = 293/573 (51.13%), Postives = 374/573 (65.27%), Query Frame = 0
Query: 38 LSFLWRSFKISTTQRAFSVSHFKMRCDRVLINAVATLEPKI-VNEKNAHDGHCTLHIHSD-SETLQRAEHQSTSDDELDDREKLRRKRISKANKGKSPWNKGRKHSPETRQRIKEKTRLAMQDPKVRMKLINLGHTQSKETRVKIGVAVRIGWKKRREKLMLQETCHVDWQNLIAEASRRGLTGEEELQWDSYNILDEQLEKEWVESVQQRKRAPRPKGSKRAPKSAEQRKRISEAIAAKWADPAYRDRVYTGLSKYHGTPIGAD-NPRRRQKRASTSTSILKKKKNNVTDNPAGNERKASTPRSRIKRSNAPIYKDPLASSKLQMIKTIRADR---ENKKAEAVRRAKLLIAEAENAAKALELAASKSPLAQASLIETRKLIDEAIQSIESIE-GSFDENEPDSPLSLSDVE---------DLKSRGFVTKDQIEVNGASLSNFDDISDSAIGKFNLQQLLNHE-DENLPSSSYDVDFMNDMDYLKGLLDNETDLSQLEPLNKPSSLTHQLDLLAPNGTTAKHGNPVPNGAKSELLELKKPPKSINSSKEKPPKSTNTVKKWVRGKLVEVTE 593
LS W+S + T + F V + + ++ + AVATLEPK V +++ ++ L +S S TL SDDELD+REKLRR RISKANKG +PWNKGRKHS ET QRI+E+TRLAMQ+PKV++KL+NLGH QS+ETR KIGV VR+GW++RR KLMLQETCH +W NLIAEASR+G GEEELQWDSY ILDEQL KEW+ESV+QRK PRPKGSKRAPKS EQR++I+EAIAAKWADP YR+RV +GL+KYHG P GA+ P+R+ + S K+K + TD + +E + R RI+R N P+YKDP+A SKL+M+K IRA R E+KK EAV RA+LLIAEAE AAKALE+AA KSP+A+ASLIETRKLI EAIQSIE IE G +E +S+ VE L++ G +Q EVNG + + + + F + +++N + DE L S S + + + + E L K S + QL+ L NGT NP+ NG K +L + P K++ KKWVRGKLVEVTE
Sbjct: 25 LSNTWKSSPLPT-RVNFHVGNQENHFGKLQVRAVATLEPKCPVPKQDGYNNKSQLGGNSSPSSTLAERLETRDSDDELDEREKLRRMRISKANKGNTPWNKGRKHSAETLQRIRERTRLAMQNPKVKIKLVNLGHAQSEETRAKIGVGVRMGWERRRGKLMLQETCHFEWMNLIAEASRKGYCGEEELQWDSYKILDEQLTKEWLESVEQRKSMPRPKGSKRAPKSLEQRRKIAEAIAAKWADPEYRERVCSGLAKYHGIPSGAERKPKRKPTAGTQSKQSPSKRKASDTDYCSASETISPIERIRIQRRNKPLYKDPMACSKLEMLKNIRAQRAAEESKKTEAVERARLLIAEAEKAAKALEVAAMKSPVARASLIETRKLIAEAIQSIELIEIGQITSDENSGYISVDSVEPVSPVENNIQLENIGMNQAEQREVNGNQTLSITNHEEFNLSSFIIPKIVNGDRDEQLASPSTNNHSFSTLSF--------------ETLIKSDS-SQQLNQLETNGTIEHEKNPLVNGTKVQLKDDGMPCKAV-----------TVTKKWVRGKLVEVTE 570
BLAST of XM_017403591.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4RYF3 (IENR2 domain-containing protein {ECO:0000259|Pfam:PF07460})
HSP 1 Score: 484.952 bits (1247), Expect = 3.396e-163
Identity = 300/612 (49.02%), Postives = 386/612 (63.07%), Query Frame = 0
Match: V4RYF3 (IENR2 domain-containing protein {ECO:0000259|Pfam:PF07460})
HSP 1 Score: 484.952 bits (1247), Expect = 3.396e-163
Identity = 300/612 (49.02%), Postives = 386/612 (63.07%), Query Frame = 0
Query: 6 MPSLELTSSQHFFQLHRISFGSQKLYHSY----------DRGLSFLWRSFKISTTQRAFSVSHFKMRCDRVLINAVATLEPKIVNEKNAHDGHCTLHIHSDSETLQRAEHQSTSDDE---LDDREKLRRKRISKANKGKSPWNKGRKHSPETRQRIKEKTRLAMQDPKVRMKLINLGHTQSKETRVKIGVAVRIGWKKRREKLMLQETCHVDWQNLIAEASRRGLTGEEELQWDSYNILDEQLEKEWVESVQQRKRAPRPKGSKRAPKSAEQRKRISEAIAAKWADPAYRDRVYTGLSKYHGTPIGADNPRRRQKRASTSTS--ILKKKKNNVTDNPAGNERKASTPRSRIKRSNAPIYKDPLASSKLQMIKTIRADR---ENKKAEAVRRAKLLIAEAENAAKALELAASKSPLAQASLIETRKLIDEAIQSIESIE-GSFDENEPDSPLSLSDVEDLKSRGFVTKDQIEVNGASLSNFDDISDSAIGKFNLQQLLNHEDENLPSSSYDVDFMNDMDYLKGLLDNETDLS----QLEPLNKPSSLTHQLDLLAPNGTTAKHGNPVPNGAKSELLELKKPPKSINSSKEKPPKSTNTVKKWVRGKLVEVTEG 594
MP L++ + Q Q H +Q L H+ D+ L F + F+ TT+ + ++ + R ++LI AVAT+EP+ + K L + + +Q QS SD E LD+REKLRR RISKANKG +PWNKGRKHS ET QRIKE+TRLAMQ+PK+RMKL+NLGH QS+ET+ KIG+ VR+GW+KRR KLM+QE+C+ +WQNLIAEA+RRGL GEEELQW SYNILDEQL+KEW+ESV++RK PR KGSKRAPK AEQRK+I+EAIAAKWADP YR+RV GLSK+HG P+G + +R+ RA T +S KKKK TD NE + +++RSN P+YKDP A SKL+MIK IRA R E+KK EA+ RA+LLIAEAE AAKAL +AA KSP+A+ASLIETRKLI EA Q+IESIE G N + + +L S+G ++ E NGA D+ + N Q L +DE+ +S+ + M+ + L N S LE L S + L PNGT+ NP PNG++ + +E+ EK K KKWVRG+LVEVTEG
Sbjct: 1 MPLLDIATGQPSLQNHLGPLRAQTLTHAKVLSCKFTLGDDKRLCFASKPFQF-TTKTSINLGQIETRRGKLLITAVATIEPECLVRKEDRAKDAVLGVDAGLPAMQ---FQS-SDGETEALDEREKLRRMRISKANKGNTPWNKGRKHSAETLQRIKERTRLAMQNPKIRMKLVNLGHAQSEETKKKIGIGVRMGWEKRRGKLMVQESCYFEWQNLIAEAARRGLAGEEELQWYSYNILDEQLKKEWLESVERRKTMPRTKGSKRAPKPAEQRKKIAEAIAAKWADPEYRERVCAGLSKFHGVPVGVERKAKRKPRAITQSSKQTPKKKKETDTDFSPRNEPNKQIEKFKLRRSNRPLYKDPSAGSKLEMIKNIRAQRSATESKKTEAIERARLLIAEAEKAAKALGVAAVKSPIARASLIETRKLIAEATQTIESIETGEITSNNENDGFPSAISAELVSQGKKETEETE-NGAV-----DLPEHVRVNGN-QTLACGKDEDFNFASFTIP--GKMNGEEILCANSNGYSLQTLNLESLMMQSDSATHVGYLEPNGTSEYEKNPQPNGSEVKNMEV-----------EKLSKPETVTKKWVRGRLVEVTEG 587
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7AF77 | E-Value: 0.000e+0, PID: 54.13 | IENR2 domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A5B7ADN6 | E-Value: 0.000e+0, PID: 52.27 | IENR2 domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A2R6QF82 | E-Value: 0.000e+0, PID: 49.92 | (Protein FAM133B like {ECO:0000313|EMBL:PSS07274.1... [more] |
| A0A2R6R0J6 | E-Value: 1.312e-180, PID: 50.16 | (Protein FAM133B like {ECO:0000313|EMBL:PSS18156.1... [more] |
| A0A5B7AG33 | E-Value: 3.312e-176, PID: 53.75 | IENR2 domain-containing protein {ECO:0000259|Pfam:... [more] |
| D7TZJ2 | E-Value: 1.688e-175, PID: 50.89 | IENR2 domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A5J5BES9 | E-Value: 1.051e-170, PID: 51.22 | IENR2 domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A4V3WLR0 | E-Value: 1.197e-167, PID: 48.88 | IENR2 domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A6A3BT09 | E-Value: 1.007e-163, PID: 51.13 | (RING-H2 finger protein ATL60-like {ECO:0000313|EM... [more] |
| V4RYF3 | E-Value: 3.396e-163, PID: 49.02 | IENR2 domain-containing protein {ECO:0000259|Pfam:... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |