XM_017359440.1

Resource Type: 
Polypeptide
Name: 
XM_017359440.1
Identifier: 
XM_017359440.1-protein
Sequence: 
MTLMGSLLESLSPSISWLSILILTALLVVLLLPKESDHNLAPSPPMLPFL
GNIHQIGKLPHYSMYKLAQKYGPIMHLKLGAVRALVISSPEMAKEVLKVH
DIECCTRAESYGTRKFSYNQKDISFCGYGDYWREMRKLAVIELFTVKRVR
SFEDARGKGLTKMVDIIAKEAADPGRKAIQINERIFSLTKKFICDVAFGT
SYEVEKLKDSEIERTFIEANAMFSSFWASDFFPSFGWIIDTLTGVQRKLD
KSFDEFDQFYEAVINEHLDPNRPKSEHEDITDGLIAMSKDPTCPVRLTKD
HIKAVFMDLFLAPIDTGSATLVWAMTELIKNKRVMKKVQAEVRQVMGNKQ
KVEESDLEKLKYFKLVVKETLRLHPPVPLLLPREAMTHFKVGGYNVLPKT
KIFVNAWAINRDPTAWDSPLEFYPERFEKNDVDYKGQHFHYIPFGAGRRM
CPGMTMGIATVDYTLATLLNFFDWDLPAGMKPDDIKMDEKVGLTIHKVKP
LYLVPTKYQP
Sequence Length: 
510
Sequence Checksum: 
d0be0dd24d815ba5801b09e9a2d3b6a5
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017359440.1, derives from mRNA, XM_017359440.1.
Loading content
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017359440.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017359440.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U9X5Z5 ((Cytochrome P450 {ECO:0000313|EMBL:AQY76211.1}))

HSP 1 Score: 1028.85 bits (2659), Expect = 0.000e+0
Identity = 495/510 (97.06%), Postives = 500/510 (98.04%), Query Frame = 0
 
Query:    1 MTLMGSLLESLSPSISWLSILILTALLVVLLLPKESDHNLAPSPPMLPFLGNIHQIGKLPHYSMYKLAQKYGPIMHLKLGAVRALVISSPEMAKEVLKVHDIECCTRAESYGTRKFSYNQKDISFCGYGDYWREMRKLAVIELFTVKRVRSFEDARGKGLTKMVDIIAKEAADPGRKAIQINERIFSLTKKFICDVAFGTSYEVEKLKDSEIERTFIEANAMFSSFWASDFFPSFGWIIDTLTGVQRKLDKSFDEFDQFYEAVINEHLDPNRPKSEHEDITDGLIAMSKDPTCPVRLTKDHIKAVFMDLFLAPIDTGSATLVWAMTELIKNKRVMKKVQAEVRQVMGNKQKVEESDLEKLKYFKLVVKETLRLHPPVPLLLPREAMTHFKVGGYNVLPKTKIFVNAWAINRDPTAWDSPLEFYPERFEKNDVDYKGQHFHYIPFGAGRRMCPGMTMGIATVDYTLATLLNFFDWDLPAGMKPDDIKMDEKVGLTIHKVKPLYLVPTKYQP 510
            +TLM SLLESLSPSISWLSILI+TALLVVLLLPKES  NLAPSPPMLPFLGNIHQIGKLPHYSMYKLAQKYGPIMHLKLGAVRALVISSPEMA+EVLKVHDIECCTRAESYGTRKFSYNQKDISFCGYGDYWREMRKLAVIELFTVKRVRSFE+ARGKGLTKMVDIIAKEA  P RKAIQINERIFSLTKKFICDVAFGTSYEVEKLKDSEIERTFIEANAMFSSFWASDFFPSFGWIIDTLTGVQRKLDKSFDEFDQFYEAVINEHLDPNRPKSEHEDITDGLIAMSKDPTCPVRLTKDHIKAVFMDLFLAPIDTGSATLVWAMTELIKNKRVMKKVQAEVRQVM NKQKVEESDLEKLKYFKLVVKETLRLHPPVPLLLPREAM HFKVGGYNVLPKTKIFVNAWAINRDP AWDSPLEFYPERFE NDVDYKGQHFHYIPFGAGRRMCPGMTMGIATVDYTLATLLNFFDWDLPAGMKP+DIKMDEKVGLTIHKVKPLYLVPTKYQP
Sbjct:    8 LTLMESLLESLSPSISWLSILIITALLVVLLLPKESHQNLAPSPPMLPFLGNIHQIGKLPHYSMYKLAQKYGPIMHLKLGAVRALVISSPEMAREVLKVHDIECCTRAESYGTRKFSYNQKDISFCGYGDYWREMRKLAVIELFTVKRVRSFEEARGKGLTKMVDIIAKEATGPSRKAIQINERIFSLTKKFICDVAFGTSYEVEKLKDSEIERTFIEANAMFSSFWASDFFPSFGWIIDTLTGVQRKLDKSFDEFDQFYEAVINEHLDPNRPKSEHEDITDGLIAMSKDPTCPVRLTKDHIKAVFMDLFLAPIDTGSATLVWAMTELIKNKRVMKKVQAEVRQVMENKQKVEESDLEKLKYFKLVVKETLRLHPPVPLLLPREAMKHFKVGGYNVLPKTKIFVNAWAINRDPIAWDSPLEFYPERFENNDVDYKGQHFHYIPFGAGRRMCPGMTMGIATVDYTLATLLNFFDWDLPAGMKPEDIKMDEKVGLTIHKVKPLYLVPTKYQP 517    
BLAST of XM_017359440.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U9X5Z2 ((Cytochrome P450 {ECO:0000313|EMBL:AQY76215.1}) (1.-.-.- {ECO:0000313|EMBL:AQY76215.1}))

HSP 1 Score: 620.157 bits (1598), Expect = 0.000e+0
Identity = 299/471 (63.48%), Postives = 381/471 (80.89%), Query Frame = 0
 
Query:   39 NLAPSPPMLPFLGNIHQIGKLPHYSMYKLAQKYGPIMHLKLGAVRALVISSPEMAKEVLKVHDIECCTRAESYGTRKFSYNQKDISFCGYGDYWREMRKLAVIELFTVKRVRSFEDARGKGLTKMVDIIAKEAADPGRKAIQINERIFSLTKKFICDVAFGTSYEVEKLKDSEIERTFIEANAMFSSFWASDFFPSFGWIIDTLTGVQRKLDKSFDEFDQFYEAVINEHLDPNRPKSEHEDITDGLIAMSKDPTCPVRLTKDHIKAVFMDLFLAPIDTGSATLVWAMTELIKNKRVMKKVQAEVRQVMGNKQKVEESDLEKLKYFKLVVKETLRLHPPVPLLLPREAMTHFKVGGYNVLPKTKIFVNAWAINRDPTAWDSPLEFYPERFEKNDVDYKGQHFHYIPFGAGRRMCPGMTMGIATVDYTLATLLNFFDWDLPAGMKPDDIKMDEKVGLTIHKVKPLYLVPTKYQ 509
            NLAP PP LP +GN+HQ+GKLPH S++KL+Q+YGP+MHLKLG V ALV+SSPEMAKEVLKVHD +CC+R +SYG RK SYNQKDISF  YGDYWRE+RKL VI+LFTVKRV SF+  R + + K V++I+ EA DP  K I ++++I SL K  IC+VAFG+++E EK  + EI++T  +   + S F A+DFFP +GWIID LTG + K++K F E D+F E+VI EHLDP+RP+  HEDITD LIA+S D T  +RL+KDHIKAVF+DLFLA IDT SAT++WAM+EL K+ RVM+KVQAE+R+++GNK +V+ES++EKLKYFK+VVKETLRLHPPVPLLLPRE+M   K+G YNV PKT+IFVNAWAI RD   W    EFYPERFE ++ D+KGQ++ +IPFGAGRRMCP MTMG+A+V+  LA +L+ FDW LP+GMKP+DI M+E+VGLT++K  PL LVP K++
Sbjct:   43 NLAPGPPRLPIIGNLHQLGKLPHLSLHKLSQEYGPVMHLKLGQVPALVVSSPEMAKEVLKVHDTKCCSRPDSYGMRKLSYNQKDISFSPYGDYWREIRKLCVIQLFTVKRVHSFQHVRDREIAKFVNVISNEALDPNTKLIHLDKKILSLAKNIICEVAFGSNFEGEKFNEDEIQKTIQDVMKVTSGFCAADFFPYYGWIIDLLTGFRHKMNKCFTEVDKFNESVIKEHLDPSRPRLNHEDITDILIALSNDETGALRLSKDHIKAVFVDLFLASIDTSSATIIWAMSELAKSPRVMRKVQAEIREIIGNKSQVDESEIEKLKYFKMVVKETLRLHPPVPLLLPRESMQFCKIGEYNVYPKTRIFVNAWAIGRDINTWYKQEEFYPERFEDSESDFKGQNYEFIPFGAGRRMCPAMTMGLASVESILANMLHCFDWQLPSGMKPEDINMEEEVGLTVNKKFPLELVPIKHE 513    
BLAST of XM_017359440.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U9X612 ((Cytochrome P450 {ECO:0000313|EMBL:AQY76222.1}) (1.-.-.- {ECO:0000313|EMBL:AQY76222.1}))

HSP 1 Score: 619.002 bits (1595), Expect = 0.000e+0
Identity = 300/476 (63.03%), Postives = 382/476 (80.25%), Query Frame = 0
 
Query:   34 KESDHNLAPSPPMLPFLGNIHQIGKLPHYSMYKLAQKYGPIMHLKLGAVRALVISSPEMAKEVLKVHDIECCTRAESYGTRKFSYNQKDISFCGYGDYWREMRKLAVIELFTVKRVRSFEDARGKGLTKMVDIIAKEAADPGRKAIQINERIFSLTKKFICDVAFGTSYEVEKLKDSEIERTFIEANAMFSSFWASDFFPSFGWIIDTLTGVQRKLDKSFDEFDQFYEAVINEHLDPNRPKSEHEDITDGLIAMSKDPTCPVRLTKDHIKAVFMDLFLAPIDTGSATLVWAMTELIKNKRVMKKVQAEVRQVMGNKQKVEESDLEKLKYFKLVVKETLRLHPPVPLLLPREAMTHFKVGGYNVLPKTKIFVNAWAINRDPTAWDSPLEFYPERFEKNDVDYKGQHFHYIPFGAGRRMCPGMTMGIATVDYTLATLLNFFDWDLPAGMKPDDIKMDEKVGLTIHKVKPLYLVPTKYQ 509
            K +  NL P PP LP +GN+HQ+G LPH S+YKL+QKYGP+MHLKLG V  L+ISSPEMAKEVLK  D  CC R +SYG R+ SYN+KDISF  YGDYWRE+RKL VI+LFTVKRVRSF+  R + + K V++++K+A DP  K+IQ++  I+SL K  IC +AFGT +E EKLK+ EI +T  +A  + S F A+DFFP +GWIID LTG ++KL+  F EFDQFYEAVI +HL+P+RP+ +HED+TD LIA+S D T  +RLTKD+IKAVFMDLFLA IDT SAT++WAM+EL ++ RVM+KVQAE+R+++GNK +V+ES++EKLKYFK+VVKETLRLHPPVPLLLPRE+M   K+G YNV PKT+I+VNAWAI RD   W  P EFYPERFE ++ D+KGQ++ +IPFGAGRRMCPG+ MG+A+V+  LA+LL+ FDW LP GM P+DI M+E+VGLTI+K  PL LVP K++
Sbjct:   38 KRNLENLPPGPPRLPIVGNLHQLGNLPHSSLYKLSQKYGPVMHLKLGQVPCLIISSPEMAKEVLKNQDASCCNRPDSYGMRRLSYNRKDISFSPYGDYWREIRKLCVIQLFTVKRVRSFQHVRDREIAKFVNVLSKQALDPNTKSIQLDIIIYSLAKNIICGIAFGTDFEREKLKEKEICKTLRDAMLVISGFCAADFFPYYGWIIDILTGFRQKLENCFQEFDQFYEAVIQQHLEPSRPRLDHEDMTDMLIALSNDKTGHLRLTKDNIKAVFMDLFLASIDTSSATIIWAMSELAQSPRVMRKVQAEIREIIGNKSQVDESEIEKLKYFKMVVKETLRLHPPVPLLLPRESMQFCKIGEYNVYPKTRIYVNAWAIGRDINTWYKPEEFYPERFEDSESDFKGQNYEFIPFGAGRRMCPGVIMGLASVESILASLLHCFDWQLPRGMNPEDISMEEEVGLTINKKFPLQLVPIKHE 513    
BLAST of XM_017359440.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P6G6 ((4-hydroxyphenylacetaldehyde oxime monooxygenase {ECO:0000313|EMBL:PSR86236.1}))

HSP 1 Score: 582.793 bits (1501), Expect = 0.000e+0
Identity = 267/479 (55.74%), Postives = 354/479 (73.90%), Query Frame = 0
 
Query:   32 LPKESDHNLAPSPPMLPFLGNIHQIGKLPHYSMYKLAQKYGPIMHLKLGAVRALVISSPEMAKEVLKVHDIECCTRAESYGTRKFSYNQKDISFCGYGDYWREMRKLAVIELFTVKRVRSFEDARGKGLTKMVDIIAKEAADPGRKAIQINERIFSLTKKFICDVAFGTSYEVEKLKDSEIERTFIEANAMFSSFWASDFFPSFGWIIDTLTGVQRKLDKSFDEFDQFYEAVINEHLDPNRPKS-EHEDITDGLIAMSKDPTCPVRLTKDHIKAVFMDLFLAPIDTGSATLVWAMTELIKNKRVMKKVQAEVRQVMGNKQKVEESDLEKLKYFKLVVKETLRLHPPVPLLLPREAMTHFKVGGYNVLPKTKIFVNAWAINRDPTAWDSPLEFYPERFEKNDVDYKGQHFHYIPFGAGRRMCPGMTMGIATVDYTLATLLNFFDWDLPAGMKPDDIKMDEKVGLTIHKVKPLYLVPTKYQ 509
            + K++ +NL P PP LP +GN+HQ+G LPH S+  L+QKYGP+M L+LG +  LV+SSPE AK+VLK HD+ECC+R  S G ++ SYN  D++F  Y DYWREMRKL +IELFTVKRV+SF   R   + +++  ++  + +P    + ++E IFSLT   +C +AFG SYE  + + ++ E+T  EA  M SSFW SDFFP  GWI+D ++G+  +L+K F +FD F+E VI EH+DP R KS EHEDITD L+ +SKD T   RLTKDHIKA+ MD+F+  IDT S TLVWAMTEL KN  VMKKVQ+E+R  +G K +V E+DL KLKY K+VVKET RLHPP  LL+PRE++ H ++GGY+V PKT+I VNAWAI RDP  W +P  FYP+RFE +++D+KGQ+F  +PFGAGRR+CPG+TMG   V++TLA LL+ FDW +P+GMK + I ++E+ GLT+HK  PLYLVP KY 
Sbjct:   31 MSKKTSNNLPPGPPRLPIIGNLHQLGNLPHRSLRSLSQKYGPVMLLRLGQIPTLVVSSPETAKQVLKTHDLECCSRPFSRGPKRLSYNLLDLAFGPYSDYWREMRKLCMIELFTVKRVQSFRPIREAEIARLISSLSLISGNP----VMLSENIFSLTNNIVCRIAFGKSYEGRQFESNKFEKTIDEAMVMLSSFWGSDFFPYVGWILDVVSGLHWRLEKLFHKFDMFFERVIEEHIDPTRTKSSEHEDITDILLGLSKDETASFRLTKDHIKAILMDIFIGAIDTSSLTLVWAMTELAKNPSVMKKVQSEIRSSVGRKSQVWENDLGKLKYLKMVVKETFRLHPPATLLIPRESIQHCQIGGYDVYPKTRILVNAWAIGRDPGTWANPDVFYPDRFEGSEIDFKGQNFELLPFGAGRRICPGLTMGATAVEFTLANLLHCFDWKIPSGMKREQISLEEEAGLTVHKKLPLYLVPEKYN 505    
BLAST of XM_017359440.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EEA7 ((Uncharacterized protein {ECO:0000313|EMBL:THG14699.1}))

HSP 1 Score: 570.852 bits (1470), Expect = 0.000e+0
Identity = 261/459 (56.86%), Postives = 344/459 (74.95%), Query Frame = 0
 
Query:   50 LGNIHQIGKLPHYSMYKLAQKYGPIMHLKLGAVRALVISSPEMAKEVLKVHDIECCTRAESYGTRKFSYNQKDISFCGYGDYWREMRKLAVIELFTVKRVRSFEDARGKGLTKMVDIIAKEAADPGRKAIQINERIFSLTKKFICDVAFGTSYEVEKLKDSEIERTFIEANAMFSSFWASDFFPSFGWIIDTLTGVQRKLDKSFDEFDQFYEAVINEHLDPNRPKSEHEDITDGLIAMSKDPTCPVRLTKDHIKAVFMDLFLAPIDTGSATLVWAMTELIKNKRVMKKVQAEVRQVMGNKQKVEESDLEKLKYFKLVVKETLRLHPPVPLLLPREAMTHFKVGGYNVLPKTKIFVNAWAINRDPTAWDSPLEFYPERFEKNDVDYKGQHFHYIPFGAGRRMCPGMTMGIATVDYTLATLLNFFDWDLPAGMKPDDIKMDEKVGLTIHKVKPLYLVPTKY 508
            +GN+HQ+GKLPH+S+ +L++K+GP+M L+LG V  LV+SSPE AK+VLK HD+ECC+R  S+G ++ SYN  D++F  Y DYWREMRKL VIELFTV+RV SF   R + L KM+  I + + +     + ++E +FSLT   IC VAFG SYE ++ +  + + +  EA AM SSFW +DFFP  GW +D  TG+  +L+K F EFD F+E VI EHLDPNR KSEHEDITD L+ +SK+ T    LTK+HIKA+ MD+F+  IDT S T+VWAMTEL KN RVMKKVQAE+R  +G K KV+E+ L+KL Y K+VVKET RLHPP   L+PRE+M H K+GGY+V PKT+I VNAWAI RDP  W++P EFYPERFEK+++D++G +F  +PFGAGRR+CPG+TMG   V++TLA LL+ FDW++P GM+  DI ++E+ GLT+HK   L+LVP KY
Sbjct:   48 IGNLHQLGKLPHHSLTQLSKKHGPVMLLRLGQVPCLVVSSPETAKQVLKTHDLECCSRPFSHGPKRLSYNLLDLAFGPYSDYWREMRKLCVIELFTVRRVHSFRHVREEELGKMIRHITQISPN---NRVNLSELVFSLTNSIICKVAFGKSYEGKQFESGKFQESIDEAMAMLSSFWGADFFPYVGWFVDVFTGLHWRLEKCFHEFDVFFERVIEEHLDPNRTKSEHEDITDILLGLSKNETASFHLTKNHIKAILMDIFIGGIDTSSLTIVWAMTELAKNPRVMKKVQAEIRSCIGRKPKVDETQLDKLNYLKMVVKETFRLHPPATFLIPRESMQHCKIGGYDVYPKTRILVNAWAIGRDPEIWNNPEEFYPERFEKSEIDFRGNNFELLPFGAGRRICPGLTMGAIAVEFTLANLLHCFDWEMPYGMERKDISLEEEAGLTVHKKLSLHLVPIKY 503    
BLAST of XM_017359440.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EEC9 ((Uncharacterized protein {ECO:0000313|EMBL:THG14729.1}))

HSP 1 Score: 563.148 bits (1450), Expect = 0.000e+0
Identity = 260/459 (56.64%), Postives = 341/459 (74.29%), Query Frame = 0
 
Query:   50 LGNIHQIGKLPHYSMYKLAQKYGPIMHLKLGAVRALVISSPEMAKEVLKVHDIECCTRAESYGTRKFSYNQKDISFCGYGDYWREMRKLAVIELFTVKRVRSFEDARGKGLTKMVDIIAKEAADPGRKAIQINERIFSLTKKFICDVAFGTSYEVEKLKDSEIERTFIEANAMFSSFWASDFFPSFGWIIDTLTGVQRKLDKSFDEFDQFYEAVINEHLDPNRPKSEHEDITDGLIAMSKDPTCPVRLTKDHIKAVFMDLFLAPIDTGSATLVWAMTELIKNKRVMKKVQAEVRQVMGNKQKVEESDLEKLKYFKLVVKETLRLHPPVPLLLPREAMTHFKVGGYNVLPKTKIFVNAWAINRDPTAWDSPLEFYPERFEKNDVDYKGQHFHYIPFGAGRRMCPGMTMGIATVDYTLATLLNFFDWDLPAGMKPDDIKMDEKVGLTIHKVKPLYLVPTKY 508
            +GN+HQ+GKLPH S+ +L++K+GP+M LKLG V  LV+SSPE AK+VLK HD+ECC+R  S+G ++  YN  D++F  Y +YWREMRKL V ELFTVKRV SF   R + L KM+  I++ + +     + ++E +FSLT   IC VA G SYE ++ +  + + +  EA AM SSFW SDFFP  GW +D  TG+  +L+K F EFD F+E VI EHL PNR KSEHEDITD L+ +SKD T   RLT++HIKA+ MD+F+  IDT S T+VWAMTEL KN RVMKKVQAE+R  +G K KV E+ L+KL Y K+VVKET RLHPP+  L+PRE+M H K+GGY+V PKT+I VNAWAI RDP  W++P EFYPERFEK+++D+KG +F  +PFGAGRR+CPG+TMG  TV++TLA LL+ FDW++P GM+  DI ++E+ GL+++K   L LVP KY
Sbjct:   48 IGNLHQLGKLPHRSLTQLSKKHGPVMLLKLGQVSCLVVSSPETAKQVLKTHDLECCSRPFSHGPKRLCYNLLDLAFGPYSNYWREMRKLCVSELFTVKRVHSFRHIREEELGKMITHISQISPN---NPVNLSELVFSLTNSIICKVALGKSYEGKQFESGKFQESIDEAMAMLSSFWGSDFFPYVGWFVDVFTGLHWRLEKCFREFDAFFERVIEEHLGPNRIKSEHEDITDILLGLSKDETASFRLTRNHIKAILMDIFIGGIDTSSLTIVWAMTELAKNPRVMKKVQAEIRSYIGRKPKVHETQLDKLNYLKMVVKETFRLHPPITFLIPRESMQHCKIGGYDVYPKTRILVNAWAIGRDPEIWNNPEEFYPERFEKSEIDFKGNNFELLPFGAGRRICPGLTMGATTVEFTLANLLHCFDWEMPYGMERKDISLEEEAGLSVYKKLSLDLVPIKY 503    
BLAST of XM_017359440.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200R7M7 ((Cytochrome P450 {ECO:0000313|EMBL:OVA18686.1}))

HSP 1 Score: 553.132 bits (1424), Expect = 0.000e+0
Identity = 252/470 (53.62%), Postives = 341/470 (72.55%), Query Frame = 0
 
Query:   39 NLAPSPPMLPFLGNIHQIGKLPHYSMYKLAQKYGPIMHLKLGAVRALVISSPEMAKEVLKVHDIECCTRAESYGTRKFSYNQKDISFCGYGDYWREMRKLAVIELFTVKRVRSFEDARGKGLTKMVDIIAKEAADPGRKAIQINERIFSLTKKFICDVAFGTSYEVEKLKDSEIERTFIEANAMFSSFWASDFFPSFGWIIDTLTGVQRKLDKSFDEFDQFYEAVINEHLDPNRPKSEHEDITDGLIAMSKDPTCPVRLTKDHIKAVFMDLFLAPIDTGSATLVWAMTELIKNKRVMKKVQAEVRQVMGNKQKVEESDLEKLKYFKLVVKETLRLHPPVPLLLPREAMTHFKVGGYNVLPKTKIFVNAWAINRDPTAWDSPLEFYPERFEKNDVDYKGQHFHYIPFGAGRRMCPGMTMGIATVDYTLATLLNFFDWDLPAGMKPDDIKMDEKVGLTIHKVKPLYLVPTKY 508
            N  PSPP LP +GN+HQ+G LPH S++KL+QKYGP+M L+ G V  LVISS E AKEVLK HD+E C+R    G ++ SYN  D++F  YG+YWRE+RKL V+EL +VKRV+SF   R + +  M+D +++  ++     I +++++ SLT + +C VAFG SY+  +  + + +    EA AM  SF ASDFFP  GWIID +TG+  +L+KSF +FD FY+ VI++HLDP R KS H+DI D L+ + KD    +RL+KDHIKA+ M++FLA +DT + T+ WAMTE+I+N  VMKKVQ E+R  +G K KVEE+DL++L+Y K+VVKETLRLHPP PLL+PRE+M H K+ GY++ PKT++ +N WAI R+P  W+ P EFYPERF  + +D+KGQ+F Y+PFG GRR CPG+ MG+A V+  LA LL  FDW+LP GMK +DI MDE  GLT+HK   L+LVP  Y
Sbjct:   38 NFPPSPPKLPIIGNLHQLGNLPHRSLWKLSQKYGPVMLLQFGRVPTLVISSSETAKEVLKTHDLEFCSRPPLVGPQRLSYNFLDVAFVPYGEYWREIRKLCVLELLSVKRVQSFGFVRAEEVAVMIDSLSRSDSN---TPIDLSQKLISLTAQIVCRVAFGKSYQRTEFDNGKFQEILYEAMAMLGSFSASDFFPKVGWIIDKITGLHGRLEKSFHDFDTFYQGVIDQHLDPERLKSNHDDIIDVLLKLEKDQFGAIRLSKDHIKAILMNIFLAGVDTSAVTMNWAMTEMIRNPEVMKKVQEEIRSYVGKKGKVEEADLDQLQYNKMVVKETLRLHPPGPLLIPRESMQHSKINGYDIHPKTRVLINVWAIGRNPDYWEKPDEFYPERFIDSSIDFKGQNFEYLPFGGGRRGCPGINMGVAMVELALANLLYHFDWELPKGMKKEDINMDESSGLTVHKKSALHLVPINY 504    
BLAST of XM_017359440.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061DSE9 ((4-hydroxyphenylacetaldehyde oxime monooxygenase, putative {ECO:0000313|EMBL:EOX92908.1}))

HSP 1 Score: 534.258 bits (1375), Expect = 0.000e+0
Identity = 247/502 (49.20%), Postives = 346/502 (68.92%), Query Frame = 0
 
Query:   14 SISWLSILILTALL----VVLLLPKESDHN--LAPSPPMLPFLGNIHQIGKLPHYSMYKLAQKYGPIMHLKLGAVRALVISSPEMAKEVLKVHDIECCTRAESYGTRKFSYNQKDISFCGYGDYWREMRKLAVIELFTVKRVRSFEDARGKGLTKMVDIIAKEAADPGRKAIQINERIFSLTKKFICDVAFGTSYEVEKLKDSEIERTFIEANAMFSSFWASDFFPSFGWIIDTLTGVQRKLDKSFDEFDQFYEAVINEHLDPNRPKSEHEDITDGLIAMSKDPTCPVRLTKDHIKAVFMDLFLAPIDTGSATLVWAMTELIKNKRVMKKVQAEVRQVMGNKQKVEESDLEKLKYFKLVVKETLRLHPPVPLLLPREAMTHFKVGGYNVLPKTKIFVNAWAINRDPTAWDSPLEFYPERFEKNDVDYKGQHFHYIPFGAGRRMCPGMTMGIATVDYTLATLLNFFDWDLPAGMKPDDIKMDEKVGLTIHKVKPLYLVPTKYQ 509
            ++ W SI+ L  LL    +VLL  K  + +  L P PP LP +GN+HQ+G LPH+S++K++QKYGPIM LKLG+   ++ISS +MA+EV+K HD++CC+R  S G ++ SYN  D++F  Y DYWREMRKL + EL ++KRV+SF   R   + K++  +++   +P    I +NE+IF+L    I  VAFG  Y  ++ K    +    EA  M +SF A DFFP+ G  ID LTG++ + ++ F E D ++E V+N+HLDPNRP+ EHED  D L+ + KD +    LTKDH+KA+ +D F+  IDT + T++WAM+ELIKN RVMKKVQ E+R  +G K KV+   +  L Y K+VVKET RLHPP  LL+PRE M H ++GG+++ P+T+I VNAWAI RDP +W++P EF+PERFE  D+D+KG HF  +PFGAGRR+CPG+ MG   +++TLA LL  FDW+LP GM  +DI M+E+ GLT H+  PL L+P +Y 
Sbjct:   38 NLDWFSIIFLFFLLQMLTMVLLRNKRGNQSAKLPPGPPRLPIIGNLHQLGNLPHHSLHKISQKYGPIMFLKLGSTPTIIISSAKMAQEVMKTHDLDCCSRPLSPGPKRLSYNHLDVAFAPYSDYWREMRKLFIFELLSMKRVQSFGYVREAEVDKLITSLSEAFPNP----INLNEKIFTLGDGIIGTVAFGKIYATKQFKHKAFQHVLDEAMNMLASFSAEDFFPTIGQFIDYLTGLKTRRERIFKELDAYFEMVLNQHLDPNRPQPEHEDFVDILVQLLKDQS--FGLTKDHVKAILLDTFVGGIDTSAITMLWAMSELIKNPRVMKKVQIEIRNTVGKKAKVDGESVANLNYLKMVVKETFRLHPPATLLIPRETMRHCEIGGFDIFPQTRIMVNAWAIGRDPDSWENPKEFHPERFEDKDIDFKGAHFELVPFGAGRRICPGLAMGATNIEFTLANLLYCFDWELPCGMNREDISMEEEGGLTYHRKTPLNLIPIRYN 533    
BLAST of XM_017359440.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J0ZJ03 ((LOW QUALITY PROTEIN: 2-methylbutanal oxime monooxygenase-like {ECO:0000313|RefSeq:XP_021274873.1}))

HSP 1 Score: 530.406 bits (1365), Expect = 0.000e+0
Identity = 244/502 (48.61%), Postives = 346/502 (68.92%), Query Frame = 0
 
Query:   14 SISWLSILILTALL----VVLLLPKESDHN--LAPSPPMLPFLGNIHQIGKLPHYSMYKLAQKYGPIMHLKLGAVRALVISSPEMAKEVLKVHDIECCTRAESYGTRKFSYNQKDISFCGYGDYWREMRKLAVIELFTVKRVRSFEDARGKGLTKMVDIIAKEAADPGRKAIQINERIFSLTKKFICDVAFGTSYEVEKLKDSEIERTFIEANAMFSSFWASDFFPSFGWIIDTLTGVQRKLDKSFDEFDQFYEAVINEHLDPNRPKSEHEDITDGLIAMSKDPTCPVRLTKDHIKAVFMDLFLAPIDTGSATLVWAMTELIKNKRVMKKVQAEVRQVMGNKQKVEESDLEKLKYFKLVVKETLRLHPPVPLLLPREAMTHFKVGGYNVLPKTKIFVNAWAINRDPTAWDSPLEFYPERFEKNDVDYKGQHFHYIPFGAGRRMCPGMTMGIATVDYTLATLLNFFDWDLPAGMKPDDIKMDEKVGLTIHKVKPLYLVPTKYQ 509
            ++ W  I+ L  LL    +VLL  K  + +  L P PP LP +GN+HQ+G LPH+S++K++QKYGPIM L LG+   ++ISS +MA+EV+K HD++CC+R  S G R+ SYN  D++F  Y DYWREMRKL + EL ++KRV+SF   R   + K++  +++   +P    I +NE+IF+L    I  VAFG  Y  ++ K+   +    EA  M +SF A DFFP+ G  ID  TG++ + ++ F E D ++E V+N+HLDPNRP+ EHED  D L+ + KD +    LTKDH+KA+ +D F+  IDT + T++WAM+ELIKN RVMKKVQ E+R  +G K KV+   +  L Y K+VVKET RLHPP  LL+PRE M H ++GGY++ P+T+I VNAWAI RDP +W++P EF+PERFE+ D+D++G HF  +PFGAGRR+CPG+ MG   +++TLA LL  FDW++P GM+ +DI M+E+ GLT H+  PL L+P +Y 
Sbjct:   41 NLDWFPIIFLFFLLQMLTMVLLRNKRGNRSAKLPPGPPRLPIIGNLHQLGNLPHHSLHKISQKYGPIMLLMLGSTPTIIISSAKMAQEVMKTHDLDCCSRPLSPGPRRLSYNHLDVAFAPYSDYWREMRKLFIFELLSMKRVQSFGYVREAEVDKLITSLSEAFPNP----INLNEKIFTLGDGIIGTVAFGKIYATKQFKNEAFQHVLDEAMNMLASFSAEDFFPTIGRFIDYSTGLKTRRERIFKELDAYFEMVLNQHLDPNRPQPEHEDFVDILVQLLKDQS--FGLTKDHVKAILLDTFVGGIDTSAITMLWAMSELIKNPRVMKKVQIEIRNTVGKKAKVDGESVANLNYLKMVVKETFRLHPPATLLIPRETMRHCEIGGYDIFPQTRIMVNAWAIGRDPDSWENPKEFHPERFEEKDIDFRGAHFELVPFGAGRRICPGLAMGATNIEFTLANLLYCFDWEVPCGMRIEDISMEEEGGLTCHRKTPLNLIPIRYN 536    
BLAST of XM_017359440.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7GQ15 ((Uncharacterized protein {ECO:0000313|EMBL:TXG46901.1}))

HSP 1 Score: 529.635 bits (1363), Expect = 0.000e+0
Identity = 249/481 (51.77%), Postives = 340/481 (70.69%), Query Frame = 0
 
Query:   37 DHNLAPSPPMLPFLGNIHQIGKLPHYSMYKLAQKYGPIMHLKLGAVRALVISSPEMAKEVLKVHDIECCTRAESYGTRKFSYNQKDISFCGYGDYWREMRKLAVIELFTVKRVRSFEDARGKGLTKMVDIIAKEAADPGRKAIQINERIFSLTKKFICDVAFGTSYEVEKLK---DSEIERTFIEANAMFSSFWASDFFPSFGWIIDTLTGVQRKLDKSFDEFDQFYEAVINEHLDPNRPKSEHEDITDGLIAMSKDPTCPVRLTKDHIKAVFMDLFLAPIDTGSATLVWAMTELIKNKRVMKKVQAEVRQVMGNKQK--VEESDLEKLKYFKLVVKETLRLHPPVPLLLPREAMTHFKVGGYNVLPKTKIFVNAWAINRDPTAWDSPLEFYPERFEKN--DVDYKGQHFHYIPFGAGRRMCPGMTMGIATVDYTLATLLNFFDWDLPAGMKPDDIKMDEKVGLTIHKVKPLYLVPTKYQP 510
            +HN  PSPP LP +GN+HQ+GKLPH S+ KL+QKYGPIM L+LG V  LVISSPEMAK+VLK HD+ECC+R  + G R+ SYN  DI+F  Y DYW+E+RK+ V+ELF+ KRV+SF   R + +   +D+I++ + +P    + ++E+++ L    IC +A G SY+ ++ +   DS++++   E  AM  SF A+DFFP  GWI+D  TG+  + +K F +FD FY+ VI+EHL+P+RP  E+ED  D L+ + K+ +    LT+DHIKA+  DLFL  IDT S TL+WAMTEL+KN RVMKK+QAE+R  +GN  K  VEE+  E LKY K+V KETLRLHPPV L++P  A  H ++GGY+V P T+I VN +AI RDP  W +P EFYPERFE     +D+ GQ+F  +PFG+GRR+CPG+ +  A  ++ LA LL  FDW LP GM+ +D+ M+E++GLT+HK  PL LVP KY P
Sbjct:    3 NHNQPPSPPQLPIIGNLHQLGKLPHRSLQKLSQKYGPIMLLQLGKVPTLVISSPEMAKQVLKTHDLECCSRPLTQGPRRLSYNFLDIAFSPYSDYWKEIRKICVLELFSSKRVKSFASVREESVASFIDLISQTSPNP----VNLSEKMYYLLDSIICKIACGRSYQGKQFQNGSDSKLDKVIQEGIAMLGSFSAADFFPYVGWIVDVFTGLHARREKCFHQFDGFYQMVIDEHLNPHRPVPENEDTVDSLLRLLKNQSDEGLLTQDHIKAILKDLFLGAIDTTSDTLLWAMTELMKNPRVMKKLQAEIRSSVGNINKPLVEETVCENLKYLKMVFKETLRLHPPVVLMIPHLAQKHIQIGGYDVYPNTRIQVNVFAIGRDPEIWKNPEEFYPERFENEAIGIDFGGQYFELLPFGSGRRICPGIKLATAAFEFVLANLLYHFDWKLPDGMETEDLSMEEELGLTVHKKIPLCLVPIKYNP 479    
Match NameStatsDescription
A0A1U9X5Z5E-Value: 0.000e+0, PID: 97.06(Cytochrome P450 {ECO:0000313|EMBL:AQY76211.1})[more]
A0A1U9X5Z2E-Value: 0.000e+0, PID: 63.48(Cytochrome P450 {ECO:0000313|EMBL:AQY76215.1}) (1... [more]
A0A1U9X612E-Value: 0.000e+0, PID: 63.03(Cytochrome P450 {ECO:0000313|EMBL:AQY76222.1}) (1... [more]
A0A2R6P6G6E-Value: 0.000e+0, PID: 55.74(4-hydroxyphenylacetaldehyde oxime monooxygenase {... [more]
A0A4S4EEA7E-Value: 0.000e+0, PID: 56.86(Uncharacterized protein {ECO:0000313|EMBL:THG1469... [more]
A0A4S4EEC9E-Value: 0.000e+0, PID: 56.64(Uncharacterized protein {ECO:0000313|EMBL:THG1472... [more]
A0A200R7M7E-Value: 0.000e+0, PID: 53.62(Cytochrome P450 {ECO:0000313|EMBL:OVA18686.1})[more]
A0A061DSE9E-Value: 0.000e+0, PID: 49.20(4-hydroxyphenylacetaldehyde oxime monooxygenase, ... [more]
A0A6J0ZJ03E-Value: 0.000e+0, PID: 48.61(LOW QUALITY PROTEIN: 2-methylbutanal oxime monoox... [more]
A0A5C7GQ15E-Value: 0.000e+0, PID: 51.77(Uncharacterized protein {ECO:0000313|EMBL:TXG4690... [more]
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
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