XM_017402752.1

Resource Type: 
Polypeptide
Name: 
XM_017402752.1
Identifier: 
XM_017402752.1-protein
Sequence: 
MATGDLDLMHPPPPPPPADSGADAGKEACSICLDVVSDNADRSFAKLHCG
HLFHLDCIGSAFNVKGAMQCPNCRKTEKGQWLYSNGSRPYTEINMEDWVP
DEDLYDHSHSEMSFGVHWCPFSGLTRHPSSFDESDLSPIPYHDLLGQHAV
FAEHAAVSSGSHHCPYVAYFGPFPSSSSFRGSVSDGSTFSSHWNSRSAAS
EMPTSYAFPSVDVHYHSWEQQSSLFPTASSRVPGPDQASLPSMTQRAARN
NFDNPRPGSFVHPFAVGHGHGSGSSIAASMFPPYPGSVARARERAQALEA
YFQHPPGNSQGLHTPVMPTLRRSNGHRNMAQGDTLALSIEHGNGFYFLSS
SPTAGRNFAEADNSMSNHFYAWEREQFPSFPSSESDRDPIWGLVHHQLPG
APDTGIRPASFRQRHGSERMTSQHRS
Sequence Length: 
426
Sequence Checksum: 
b792de34c11891eca7fb158f54b5c106
View location in JBrowse: 
DCARv2_Chr6:16258657..16265271+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017402752.1, derives from mRNA, XM_017402752.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017402752.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017402752.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZGR2 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})

HSP 1 Score: 513.072 bits (1320), Expect = 2.762e-179
Identity = 262/428 (61.21%), Postives = 314/428 (73.36%), Query Frame = 0
 
Query:    1 MATGDLDLMHPPPPPPPADSGADAGKEACSICLDVVSDNADRSFAKLHCGHLFHLDCIGSAFNVKGAMQCPNCRKTEKGQWLYSNGSRPYTEINMEDWVPDEDLYDHSHSEMSFGVHWCPFSGLTRHPSSFDESDLSPIPYHDLLGQHAVFAEHAAVSSGSHHCPYVAYFGPF-PSSSSFRGSVSDGSTFSSHWNSRSAASEMPTSYAFPSVDVHYHSWEQQSSLFPTASSRVPGPDQASLPSMTQRAARNNFDNPRPGSFVHPFAVGHGHG--SGSSIAASMFPPYPGSVARARERAQALEAYFQHPPGNSQGLHTPVMPTLRRSNGHRNMAQGDTLALSIEHGNGFYFLSSSPTAGRNFAEADNSMSNHFYAWEREQFPSFPSSESDRDPIWGLVHHQLPGAPDTGIRPASFRQRHGSERMTSQHR 425
            M  GD D+    P    +D G  A   +CSICL+ V++N DRS+AKL CGH FHLDCIGSAFN+KGAMQCPNCRK EKGQWLY+NG RP+ E +M+DW  DEDLYD S+SEMSFGVHWCPF+GLTR P+SF E + S   YHDLLGQHA+FAE  AVSS +H CPY+AYFGP  P SS+  GSVSDGS F+ HWN  S  SE+PTS AFP++D+HYHSWE  S+ FPT SSR+ G DQ S+PS+T RAAR + D PR GSF+HPF VGH     +GSS+A+SM PPYPGSVARAR+R QAL+AYFQ  P NS  +  PV+   RRS+  R +AQ   +A S +   GFY+  S+ ++ RNF EA+NSMSN F+ WERE+ PSFP S+ DRDP WG   HQ  G  DT IR +SFRQRHGSER  SQ+R
Sbjct:    1 MGLGDADI----PDDGDSDGGGKASLVSCSICLETVTENGDRSWAKLQCGHEFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRPFPEFSMDDWAHDEDLYDLSYSEMSFGVHWCPFTGLTRLPTSFVEGEFSSTAYHDLLGQHAIFAEQTAVSSATHPCPYIAYFGPIHPPSSNSGGSVSDGSDFNHHWNGPSVPSELPTSNAFPAMDLHYHSWEHHSAPFPTTSSRIGGTDQPSVPSVTHRAARPSSDIPRSGSFMHPFVVGHSSAARAGSSVASSMIPPYPGSVARARDRVQALQAYFQQ-PSNSPTIRAPVISGTRRSSSQRGLAQVGPVASSSDQAGGFYYFPSAGSSSRNFQEAENSMSNRFHGWERERLPSFPLSQVDRDPGWGPF-HQATGGSDTAIRSSSFRQRHGSERTPSQNR 422
[Close]
BLAST of XM_017402752.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7ENL6 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})

HSP 1 Score: 506.138 bits (1302), Expect = 1.643e-176
Identity = 259/405 (63.95%), Postives = 307/405 (75.80%), Query Frame = 0
 
Query:   24 AGKEACSICLDVVSDNADRSFAKLHCGHLFHLDCIGSAFNVKGAMQCPNCRKTEKGQWLYSNGSRPYTEINMEDWVPDEDLYDHSHSEMSFGVHWCPFSGLTRHPSSFDESDLSPIPYHDLLGQHAVFAEHAAVSSGSHHCPYVAYFGPFPSSSSFRGSVSDGSTFSSHWNSRSAASEMPTSYAFPSVDVHYHSWEQQSSLFPTASSRVPGPDQASLPSMTQRAARNNFDNPRPGSFVHPFAVGHGHG--SGSSIAASMFPPYPGSVARARERAQALEAYFQHPPGNSQGLHTPVMPTLRRSNGHRNMAQGDTLALSIEHGNGFYFLSSSPTAGRNFAEADNSMSNHFYAWEREQFPSFPSSESDRDPIWGLVHHQLPGAPDTGIRPASFRQRHGSERMTSQHRS 426
            A   +CSICL+ V+DN DRS++KL CGH FHLDCIGSAFN+KG MQCPNCRK EKGQWLY++G RP  + NMEDW  DEDLYD S++EMSFGVHWCPFSGLTR P+SFDE +LS   YHDLLGQHA+FA+H AVSS +H CPY+AY G  PSSS+  GS++DG  F++HW S S  +E+P SYAFP +DVHYHSW+  SS FP ASSRV   DQ+S+PS+TQR AR N D PRPGSFV PF VGHG    +GSS+A+ M PPYPGSVARAR+R QAL+AYFQ  P NS  + TPVM   RRSN HR +AQ    A S +   GFYF  SS ++GRNF EA+N +SN ++AWERE  P+FP S+ DRDPIWG  HH   G+ D+G R  SFR RHGSERM SQ+RS
Sbjct:   26 ASVVSCSICLEAVTDNGDRSWSKLQCGHQFHLDCIGSAFNIKGQMQCPNCRKIEKGQWLYASGCRPLPDFNMEDWAHDEDLYDLSYTEMSFGVHWCPFSGLTRLPASFDEGELSSSAYHDLLGQHAIFADHTAVSSAAHPCPYIAYVGIHPSSSNSSGSINDGPNFNNHWTSPSVPNEIPASYAFPGMDVHYHSWDHHSS-FPMASSRVGTADQSSVPSVTQRVARTNADIPRPGSFVPPFLVGHGSAARAGSSVASPMIPPYPGSVARARDRVQALQAYFQQ-PSNSPAVRTPVMSATRRSNNHRGLAQVGPAASSSDQAGGFYFYPSS-SSGRNFQEAENPVSNRYHAWEREHLPAFPLSQVDRDPIWGPFHHTGVGS-DSGSRAGSFRPRHGSERMPSQNRS 426
[Close]
BLAST of XM_017402752.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZIX8 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})

HSP 1 Score: 504.597 bits (1298), Expect = 6.308e-176
Identity = 259/428 (60.51%), Postives = 311/428 (72.66%), Query Frame = 0
 
Query:    1 MATGDLDLMHPPPPPPPADSGADAGKEACSICLDVVSDNADRSFAKLHCGHLFHLDCIGSAFNVKGAMQCPNCRKTEKGQWLYSNGSRPYTEINMEDWVPDEDLYDHSHSEMSFGVHWCPFSGLTRHPSSFDESDLSPIPYHDLLGQHAVFAEHAAVSSGSHHCPYVAYFGPF-PSSSSFRGSVSDGSTFSSHWNSRSAASEMPTSYAFPSVDVHYHSWEQQSSLFPTASSRVPGPDQASLPSMTQRAARNNFDNPRPGSFVHPFAVGHGHG--SGSSIAASMFPPYPGSVARARERAQALEAYFQHPPGNSQGLHTPVMPTLRRSNGHRNMAQGDTLALSIEHGNGFYFLSSSPTAGRNFAEADNSMSNHFYAWEREQFPSFPSSESDRDPIWGLVHHQLPGAPDTGIRPASFRQRHGSERMTSQHR 425
            M  GD D+    P    +D G  A   +CSICL+ V++N DRS+AKL CGH FHLDCIGSAFN+KGAMQCPNCRK EKGQWLY+NG RP+ E +M+DW  DEDLYD S+SEMSFGVHWCPF+GLTR P+SF E + S   YHDLLGQHA+FAE  AVSS +H CPY+AYFGP  P SS+  GSVSDGS F+ HWN  S  SE+PTS AFP++D+HYHSWE  S+ FPT SSR+ G DQ S+PS+T RAAR + D PR GSF+HPF VGH     +GSS+A+SM PPYPGSVARAR+R QAL+AYFQ  P NS  + TPV+  +RRS+  R + Q   +A S +   GFYF  S  ++GRNF EA+NS+ N F+AW+RE  PSFP S+ DRD  WG  H    G+    IR  SFRQRHGSERM SQ+R
Sbjct:    1 MGLGDADI----PDDGDSDGGGKASLVSCSICLETVTENGDRSWAKLQCGHEFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRPFPEFSMDDWAHDEDLYDLSYSEMSFGVHWCPFTGLTRLPTSFVEGEFSSTAYHDLLGQHAIFAEQTAVSSATHPCPYIAYFGPIHPPSSNSGGSVSDGSDFNHHWNGPSVPSELPTSNAFPAMDLHYHSWEHHSAPFPTTSSRIGGTDQPSVPSVTHRAARPSSDIPRSGSFMHPFVVGHSSAARAGSSVASSMIPPYPGSVARARDRVQALQAYFQQ-PSNSPTMRTPVIAGMRRSSSQRGLPQVGPVASSSDQTGGFYFFPSG-SSGRNFQEAENSVLNRFHAWDREHLPSFPMSQVDRDQGWGPFHQTAGGSDTAAIRSNSFRQRHGSERMPSQNR 422
[Close]
BLAST of XM_017402752.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BPU9 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})

HSP 1 Score: 504.212 bits (1297), Expect = 9.742e-176
Identity = 254/403 (63.03%), Postives = 301/403 (74.69%), Query Frame = 0
 
Query:   28 ACSICLDVVSDNADRSFAKLHCGHLFHLDCIGSAFNVKGAMQCPNCRKTEKGQWLYSNGSRPYTEINMEDWVPDEDLYDHSHSEMSFGVHWCPFSGLTRHPSSFDESDLSPIPYHDLLGQHAVFAEHAAVSSGSHHCPYVAYFGP--FPSSSSFRGSVSDGSTFSSHWNSRSAASEMPTSYAFPSVDVHYHSWEQQSSLFPTASSRVPGPDQASLPSMTQRAARNNFDNPRPGSFVHPFAVGHGHG--SGSSIAASMFPPYPGSVARARERAQALEAYFQHPPGNSQGLHTPVMPTLRRSNGHRNMAQGDTLALSIEHGNGFYFLSSSPTAGRNFAEADNSMSNHFYAWEREQFPSFPSSESDRDPIWGLVHHQLPGAPDTGIRPASFRQRHGSERMTSQHRS 426
            +CSICL+ V+ N DRS+AKL CGH FHLDCIGSAFN+KGAMQCPNCRK EKGQWLY+NG RP+ E +M+DW  DEDLYD S+SEMSFGVHWCPF GL R PSSFDE + S   YHDLLGQHA+ AEH A+SS +H CPY+AY GP   PS+S+  GSVSDGS F+SHWN  S  SEMPT YAFP++D+HYHSWE  S  FPT SSR+ G DQ S+PS+TQRAAR N D PR GSF+HPF VGH     +GSS+ +SM PPYPGSVARAR+R QAL+AYFQ  P NS  +  PV+   RR +  R + Q   +A S +   GFYF  S+ ++ R+F EA+NS+SN F+AWERE+ P F  S+ DRDP WG   HQ  G  DT IR +SFRQRHGSERM SQ+RS
Sbjct:   22 SCSICLETVTYNGDRSWAKLQCGHEFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRPFPEFSMDDWPHDEDLYDLSYSEMSFGVHWCPFGGLARLPSSFDEGEFSSTAYHDLLGQHAILAEHTAISSATHPCPYIAYVGPPIHPSASNSGGSVSDGSNFNSHWNGPSVPSEMPT-YAFPAMDLHYHSWEHHSPPFPTTSSRIGGADQPSVPSLTQRAARANSDIPRSGSFMHPFVVGHSSAARAGSSVTSSMIPPYPGSVARARDRVQALQAYFQQ-PSNSPTIRAPVISGTRRPSSQRGLGQVGPVASSSDQAGGFYFFPSAGSSSRSFQEAENSVSNRFHAWERERLPPFTFSQVDRDPGWGPF-HQAAGGSDTAIRSSSFRQRHGSERMPSQNRS 421
[Close]
BLAST of XM_017402752.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3AXK5 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})

HSP 1 Score: 501.13 bits (1289), Expect = 1.745e-174
Identity = 255/405 (62.96%), Postives = 301/405 (74.32%), Query Frame = 0
 
Query:   24 AGKEACSICLDVVSDNADRSFAKLHCGHLFHLDCIGSAFNVKGAMQCPNCRKTEKGQWLYSNGSRPYTEINMEDWVPDEDLYDHSHSEMSFGVHWCPFSGLTRHPSSFDESDLSPIPYHDLLGQHAVFAEHAAVSSGSHHCPYVAYFGPFPSSSSFRGSVSDGSTFSSHWNSRSAASEMPTSYAFPSVDVHYHSWEQQSSLFPTASSRVPGPDQASLPSMTQRAARNNFDNPRPGSFVHPFAVGHGHG--SGSSIAASMFPPYPGSVARARERAQALEAYFQHPPGNSQGLHTPVMPTLRRSNGHRNMAQGDTLALSIEHGNGFYFLSSSPTAGRNFAEADNSMSNHFYAWEREQFPSFPSSESDRDPIWGLVHHQLPGAPDTGIRPASFRQRHGSERMTSQHRS 426
            A   +CSICL+ V+DN DRS+AKL CGH FHLDCIGSAFN+KG MQCPNCRK EKGQWLY+ G RP  + NM+DW  DEDLYD S++EMSFGVHWCPFSGLTR PSSFDE DLS   YHDL+GQHA+FAEH AVSS +H CPY+AY G  PSSS+  GS++DG  F++HW S S  SEMP SYAFP +DVHYHSW+  SS FP  +SRV   DQ+S+PS+TQR AR N D  RPGSFV PF VGHG    +GSS+A+ M PPYPGSVARAR+R QAL+AYFQ  P NS  + TPVM + RRS+ HR +AQ    A S +   GFYF  S  ++GRNF EA+N +SN +  WER+  P+FP S+ +RDPIWG  HH   G+ DT  R  SFR RHGSERM SQ+RS
Sbjct:   30 ASAVSCSICLEAVTDNGDRSWAKLQCGHQFHLDCIGSAFNIKGQMQCPNCRKIEKGQWLYATGCRPLPDFNMDDWAHDEDLYDLSYAEMSFGVHWCPFSGLTRLPSSFDEGDLSSSAYHDLIGQHAIFAEHTAVSSAAHPCPYIAYVGIHPSSSNSSGSINDGPNFNNHWTSPSVPSEMPASYAFPGMDVHYHSWDHHSSSFPMPNSRVGTADQSSVPSVTQRVARTNADIARPGSFVPPFLVGHGSAARAGSSVASPMIPPYPGSVARARDRVQALQAYFQQ-PSNSPAVRTPVMSSTRRSSNHRGLAQVGPAASSSDQAGGFYFYPSG-SSGRNFQEAENQVSNRYLTWERDHLPAFPLSQVERDPIWGPFHHTGVGS-DTVSRSGSFRPRHGSERMPSQNRS 431
[Close]
BLAST of XM_017402752.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7WBJ6 ((uncharacterized protein LOC104222108 isoform X3 {ECO:0000313|RefSeq:XP_009771600.1}))

HSP 1 Score: 500.36 bits (1287), Expect = 2.341e-174
Identity = 260/405 (64.20%), Postives = 298/405 (73.58%), Query Frame = 0
 
Query:   24 AGKEACSICLDVVSDNADRSFAKLHCGHLFHLDCIGSAFNVKGAMQCPNCRKTEKGQWLYSNGSRPYTEINMEDWVPDEDLYDHSHSEMSFGVHWCPFSGLTRHPSSFDESDLSPIPYHDLLGQHAVFAEHAAVSSGSHHCPYVAYFGPFPSSSSFRGSVSDGSTFSSHWNSRSAASEMPTSYAFPSVDVHYHSWEQQSSLFPTASSRVPGPDQASLPSMTQRAARNNFDNPRPGSFVHPFAVGHGHG--SGSSIAASMFPPYPGSVARARERAQALEAYFQHPPGNSQGLHTPVMPTLRRSNGHRNMAQGDTLALSIEHGNGFYFLSSSPTAGRNFAEADNSMSNHFYAWEREQFPSFPSSESDRDPIWGLVHHQLPGAPDTGIRPASFRQRHGSERMTSQHRS 426
            A   ACSICL+ V+DN DRS+AKL CGH FHLDCIGSAFN+KG MQCPNCRK EKGQWLY+ G RP  E NM+DW  DEDLYD S++EMSFGVHWCPFSGLTR PSSFDE DLS   YHDLLGQHA+FAEH AVSS +H CPYVAY G  PSSS+  GS++DG  F++HWNS S  SEMP SYAFP +DVHYHSW+  SS FP  SSRV   DQ+ +PS+TQRAAR N D PRPGSFV PF V HG    +GSS+A+ M PPYPGS AR R+R QAL+AYFQ  P NS  +  PVM   RRS+ HR MAQ   +A S +   GFYF  S  ++GRNF EA+N +SN +  WERE  P FP S+ DRDPIWG  HH   G+ DTG R  S+R RHGS RM SQ+RS
Sbjct:   22 ASAVACSICLEAVTDNGDRSWAKLQCGHQFHLDCIGSAFNIKGQMQCPNCRKIEKGQWLYAGGCRPLPEFNMDDWAHDEDLYDLSYAEMSFGVHWCPFSGLTRLPSSFDEGDLSSSAYHDLLGQHAIFAEHTAVSSAAHPCPYVAYVGIHPSSSNSSGSINDGPNFNNHWNSPSVPSEMPASYAFPGMDVHYHSWDHHSSSFPVTSSRVGTADQSLIPSVTQRAARTNADIPRPGSFVPPFLVSHGSAARAGSSVASPMIPPYPGSAARTRDRVQALQAYFQQ-PSNSPAVRAPVMSATRRSSSHRGMAQVGPVASSSDQAGGFYFYPSG-SSGRNFQEAENPVSNRY--WEREHLPDFPLSQVDRDPIWGPFHHTGVGS-DTGSRSGSYRPRHGSWRMPSQNRS 421
[Close]
BLAST of XM_017402752.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3ZAY7 ((uncharacterized protein LOC107784866 isoform X2 {ECO:0000313|RefSeq:XP_016461543.1}))

HSP 1 Score: 500.36 bits (1287), Expect = 2.341e-174
Identity = 260/405 (64.20%), Postives = 298/405 (73.58%), Query Frame = 0
 
Query:   24 AGKEACSICLDVVSDNADRSFAKLHCGHLFHLDCIGSAFNVKGAMQCPNCRKTEKGQWLYSNGSRPYTEINMEDWVPDEDLYDHSHSEMSFGVHWCPFSGLTRHPSSFDESDLSPIPYHDLLGQHAVFAEHAAVSSGSHHCPYVAYFGPFPSSSSFRGSVSDGSTFSSHWNSRSAASEMPTSYAFPSVDVHYHSWEQQSSLFPTASSRVPGPDQASLPSMTQRAARNNFDNPRPGSFVHPFAVGHGHG--SGSSIAASMFPPYPGSVARARERAQALEAYFQHPPGNSQGLHTPVMPTLRRSNGHRNMAQGDTLALSIEHGNGFYFLSSSPTAGRNFAEADNSMSNHFYAWEREQFPSFPSSESDRDPIWGLVHHQLPGAPDTGIRPASFRQRHGSERMTSQHRS 426
            A   ACSICL+ V+DN DRS+AKL CGH FHLDCIGSAFN+KG MQCPNCRK EKGQWLY+ G RP  E NM+DW  DEDLYD S++EMSFGVHWCPFSGLTR PSSFDE DLS   YHDLLGQHA+FAEH AVSS +H CPYVAY G  PSSS+  GS++DG  F++HWNS S  SEMP SYAFP +DVHYHSW+  SS FP  SSRV   DQ+ +PS+TQRAAR N D PRPGSFV PF V HG    +GSS+A+ M PPYPGS AR R+R QAL+AYFQ  P NS  +  PVM   RRS+ HR MAQ   +A S +   GFYF  S  ++GRNF EA+N +SN +  WERE  P FP S+ DRDPIWG  HH   G+ DTG R  S+R RHGS RM SQ+RS
Sbjct:   22 ASAVACSICLEAVTDNGDRSWAKLQCGHQFHLDCIGSAFNIKGQMQCPNCRKIEKGQWLYAGGCRPLPEFNMDDWAHDEDLYDLSYAEMSFGVHWCPFSGLTRLPSSFDEGDLSSSAYHDLLGQHAIFAEHTAVSSAAHPCPYVAYVGIHPSSSNSSGSINDGPNFNNHWNSPSVPSEMPASYAFPGMDVHYHSWDHHSSSFPVTSSRVGTADQSLIPSVTQRAARTNADIPRPGSFVPPFLVSHGSAARAGSSVASPMIPPYPGSAARTRDRVQALQAYFQQ-PSNSPAVRAPVMSATRRSSSHRGMAQVGPVASSSDQAGGFYFYPSG-SSGRNFQEAENPVSNRY--WEREHLPDFPLSQVDRDPIWGPFHHTGVGS-DTGSRSGSYRPRHGSWRMPSQNRS 421
[Close]
BLAST of XM_017402752.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8E4G8 ((uncharacterized protein LOC107839624 {ECO:0000313|RefSeq:XP_016538684.1}))

HSP 1 Score: 499.59 bits (1285), Expect = 6.821e-174
Identity = 254/405 (62.72%), Postives = 300/405 (74.07%), Query Frame = 0
 
Query:   24 AGKEACSICLDVVSDNADRSFAKLHCGHLFHLDCIGSAFNVKGAMQCPNCRKTEKGQWLYSNGSRPYTEINMEDWVPDEDLYDHSHSEMSFGVHWCPFSGLTRHPSSFDESDLSPIPYHDLLGQHAVFAEHAAVSSGSHHCPYVAYFGPFPSSSSFRGSVSDGSTFSSHWNSRSAASEMPTSYAFPSVDVHYHSWEQQSSLFPTASSRVPGPDQASLPSMTQRAARNNFDNPRPGSFVHPFAVGHGHG--SGSSIAASMFPPYPGSVARARERAQALEAYFQHPPGNSQGLHTPVMPTLRRSNGHRNMAQGDTLALSIEHGNGFYFLSSSPTAGRNFAEADNSMSNHFYAWEREQFPSFPSSESDRDPIWGLVHHQLPGAPDTGIRPASFRQRHGSERMTSQHRS 426
            A   +CSICL+ V+DN DRS+AKL CGH FHLDCIGSAFN+KG MQCPNCRK EKGQWLY+ G RP  + NM+DW  DEDLYD S++EMSFGVHWCPFSGLTR PSSFDE DLS   YHDL+GQHA+FAEH AVSS +H CPY+AY G  PSSS+  GS++DG  F++HW S S  SEMP SYAFP +DVHYHSW+  SS FP  +SRV   DQ+S+PS+TQR AR N D  RPGSFV PF VGHG    +GSS+A+ M PPYPGSVAR R+R QAL+AYFQ  P NS  + TPVM + RRS+ HR +AQ    A S +   GFYF  S  ++GRNF EA+N +SN +  WER+  P+FP S+ +RDPIWG  HH   G+ DT  R  SFR RHGSERM SQ+RS
Sbjct:   29 ASAVSCSICLEAVTDNGDRSWAKLQCGHQFHLDCIGSAFNIKGQMQCPNCRKIEKGQWLYATGCRPLPDFNMDDWAHDEDLYDLSYAEMSFGVHWCPFSGLTRLPSSFDEGDLSSSAYHDLIGQHAIFAEHTAVSSAAHPCPYIAYVGIHPSSSNSSGSINDGPNFNNHWTSPSVPSEMPASYAFPGMDVHYHSWDHHSSSFPMPNSRVGTADQSSVPSVTQRVARTNADIARPGSFVPPFLVGHGSAARAGSSVASPMIPPYPGSVARTRDRVQALQAYFQQ-PSNSPAVRTPVMSSTRRSSNHRGLAQVGPAASSSDQAGGFYFYPSG-SSGRNFQEAENQVSNRYLTWERDHLPAFPLSQVERDPIWGPFHHTGVGS-DTVSRSGSFRPRHGSERMPSQNRS 430
[Close]
BLAST of XM_017402752.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1CAU3 ((DNA binding protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400063581}))

HSP 1 Score: 495.738 bits (1275), Expect = 2.546e-172
Identity = 258/405 (63.70%), Postives = 305/405 (75.31%), Query Frame = 0
 
Query:   24 AGKEACSICLDVVSDNADRSFAKLHCGHLFHLDCIGSAFNVKGAMQCPNCRKTEKGQWLYSNGSRPYTEINMEDWVPDEDLYDHSHSEMSFGVHWCPFSGLTRHPSSFDESDLSPIPYHDLLGQHAVFAEHAAVSSGSHHCPYVAYFGPFPSSSSFRGSVSDGSTFSSHWNSRSAASEMPTSYAFPSVDVHYHSWEQQSSLFPTASSRVPGPDQASLPSMTQRAARNNFDNPRPGSFVHPFAVGHGHG--SGSSIAASMFPPYPGSVARARERAQALEAYFQHPPGNSQGLHTPVMPTLRRSNGHRNMAQGDTLALSIEHGNGFYFLSSSPTAGRNFAEADNSMSNHFYAWEREQFPSFPSSESDRDPIWGLVHHQLPGAPDTGIRPASFRQRHGSERMTSQHRS 426
            A   +CSICL+ V+DN DRS++KL CGH FHLDCIGSAFN+KG MQCPNCRK EKGQWLY++G RP  + NMEDW  DEDLYD S++EMSFGVHWCPFSGLTR PSS+DE +LS   YHDLLGQHA+FA+H AVSS +H CPY+AY G  PSSS+  GS++DG  F++HW S S  +EMP SYAFP +DVHYHSW+  SS FP A+SRV   DQ+S+PS+TQR AR N D PRPGSFV PF VGHG    +GSS+A+ M PPYPGSVARAR+R QAL+AYFQ  P NS  + TPVM   RRSN HR +AQ    A S +   GFYF  SS ++GRNF EA+N +SN ++AWERE  P+FP S+ DRDPIWG  HH      D+G R  SFR RHGSERM SQ+RS
Sbjct:   27 ASAVSCSICLEAVTDNGDRSWSKLQCGHQFHLDCIGSAFNIKGQMQCPNCRKIEKGQWLYASGCRPLPDFNMEDWAHDEDLYDLSYTEMSFGVHWCPFSGLTRLPSSYDEGELSSSAYHDLLGQHAIFADHTAVSSAAHPCPYIAYVGIHPSSSNSSGSINDGLNFNNHWTSSSVPNEMPASYAFPGMDVHYHSWDHHSS-FPMANSRVGTADQSSVPSVTQRVARTNADIPRPGSFVPPFLVGHGSAARAGSSVASPMIPPYPGSVARARDRVQALQAYFQQ-PSNSPAVRTPVMSATRRSNNHRGLAQVGPTASSSDQAGGFYFYPSS-SSGRNFQEAENPVSNRYHAWEREHLPTFPFSQVDRDPIWGPFHHTG-VGSDSGSRSGSFRPRHGSERMPSQNRS 427
[Close]
BLAST of XM_017402752.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0II33 ((Putative RING/U-box superfamily protein-like {ECO:0000313|EMBL:JAP31946.1}))

HSP 1 Score: 495.352 bits (1274), Expect = 3.140e-172
Identity = 258/405 (63.70%), Postives = 305/405 (75.31%), Query Frame = 0
 
Query:   24 AGKEACSICLDVVSDNADRSFAKLHCGHLFHLDCIGSAFNVKGAMQCPNCRKTEKGQWLYSNGSRPYTEINMEDWVPDEDLYDHSHSEMSFGVHWCPFSGLTRHPSSFDESDLSPIPYHDLLGQHAVFAEHAAVSSGSHHCPYVAYFGPFPSSSSFRGSVSDGSTFSSHWNSRSAASEMPTSYAFPSVDVHYHSWEQQSSLFPTASSRVPGPDQASLPSMTQRAARNNFDNPRPGSFVHPFAVGHGHG--SGSSIAASMFPPYPGSVARARERAQALEAYFQHPPGNSQGLHTPVMPTLRRSNGHRNMAQGDTLALSIEHGNGFYFLSSSPTAGRNFAEADNSMSNHFYAWEREQFPSFPSSESDRDPIWGLVHHQLPGAPDTGIRPASFRQRHGSERMTSQHRS 426
            A   +CSICL+ V+DN DRS++KL CGH FHLDCIGSAFN+KG MQCPNCRK EKGQWLY++G RP  + NMEDW  DEDLYD S++EMSFGVHWCPFSGLTR PSS+DE +LS   YHDLLGQHA+FA+H AVSS +H CPY+AY G  PSSS+  GS++DG  F++HW S S  +EMP SYAFP +DVHYHSW+  SS FP A+SRV   DQ+S+PS+TQR AR N D PRPGSFV PF VGHG    +GSS+A+ M PPYPGSVARAR+R QAL+AYFQ  P NS  + TPVM   RRSN HR +AQ    A S +   GFYF  SS ++GRNF EA+N +SN ++AWERE  P+FP S+ DRDPIWG  HH      D+G R  SFR RHGSERM SQ+RS
Sbjct:   28 ASAVSCSICLEAVTDNGDRSWSKLQCGHQFHLDCIGSAFNIKGQMQCPNCRKIEKGQWLYASGCRPLPDFNMEDWAHDEDLYDLSYTEMSFGVHWCPFSGLTRLPSSYDEGELSSSAYHDLLGQHAIFADHTAVSSAAHPCPYIAYVGIHPSSSNSSGSINDGPNFNNHWTSPSVPNEMPASYAFPGMDVHYHSWDHHSS-FPMANSRVGTADQSSVPSVTQRVARTNADIPRPGSFVPPFLVGHGSAARAGSSVASPMIPPYPGSVARARDRVQALQAYFQQ-PSNSPAVRTPVMSATRRSNNHRGLAQMGPAASSSDQAGGFYFYPSS-SSGRNFQEAENPVSNRYHAWEREHLPAFPLSQVDRDPIWGPFHHTG-VGSDSGSRSGSFRPRHGSERMPSQNRS 428
Match NameStatsDescription
A0A5B6ZGR2E-Value: 2.762e-179, PID: 61.21RING-type domain-containing protein {ECO:0000259|P... [more]
A0A3Q7ENL6E-Value: 1.643e-176, PID: 63.95RING-type domain-containing protein {ECO:0000259|P... [more]
A0A5B6ZIX8E-Value: 6.308e-176, PID: 60.51RING-type domain-containing protein {ECO:0000259|P... [more]
A0A5J5BPU9E-Value: 9.742e-176, PID: 63.03RING-type domain-containing protein {ECO:0000259|P... [more]
A0A2G3AXK5E-Value: 1.745e-174, PID: 62.96RING-type domain-containing protein {ECO:0000259|P... [more]
A0A1U7WBJ6E-Value: 2.341e-174, PID: 64.20(uncharacterized protein LOC104222108 isoform X3 {... [more]
A0A1S3ZAY7E-Value: 2.341e-174, PID: 64.20(uncharacterized protein LOC107784866 isoform X2 {... [more]
A0A1U8E4G8E-Value: 6.821e-174, PID: 62.72(uncharacterized protein LOC107839624 {ECO:0000313... [more]
M1CAU3E-Value: 2.546e-172, PID: 63.70(DNA binding protein {ECO:0000313|EnsemblPlants:PG... [more]
A0A0V0II33E-Value: 3.140e-172, PID: 63.70(Putative RING/U-box superfamily protein-like {ECO... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.