Resource Type:
Polypeptide
Name:
XM_017398985.1
Identifier:
XM_017398985.1-protein
Sequence:
MDPCPFVRIVVKNLALKFGVLKSDTFCYCKIKLRDFATQTSKICVVLQEN
QQIDDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFAGKGEISCGFG
GGKKIGSVSLDLKSVENRVCVIQNGWVEIGNGVKLNLNVRIEPDPRFVFQ
FDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKS
RSCLTSLRSDKEIHPKERKGWSITIHDLSGSPVACASMVTPFVPSSGTNR
VCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAI
TLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFDSGSISSSDVGSGSWAH
LLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSM
DACRSFSSKLRKELRQPGHE
Sequence Length:
420
Sequence Checksum:
9fbe0a2063948b2144085cbf311f5eef
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017398985.1, derives from mRNA, XM_017398985.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017398985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017398985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B378 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8536302.1}))
HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0
Identity = 284/435 (65.29%), Postives = 332/435 (76.32%), Query Frame = 0
Match: A0A5J5B378 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8536302.1}))
HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0
Identity = 284/435 (65.29%), Postives = 332/435 (76.32%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKFGVLK---SDTF-CYCKIKLRDFATQTSKICVVLQENQQIDDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFAGKGEISCGFGGGKKIGSVSL--DLKSVENRVCVIQNGWVEIGNGVK------LNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHPKERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPD---GGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFDSGSISSSDVGSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 420
MDPC FVRIV++NLALKF + SD+ C+CKIKL F TQ + + ++ +++ + ASF+L KS F+KL+EKS +++P C+K++I+ G +CG GK +GSVSL DLK E+R CV QNGWV IG K L+LNVR EPDPRFVFQFDGEPECSPQVFQ+NGN+RQ VFTC+F FRNSG +RNLR+RS SE + RS L+SL+ DKE H KERKGWSI IHDLSGSPVA ASMVTPFVPS GT+RV RSNPGAWLIL PG TWKPWGRLEAW E+GDHLGY+FE PD GGID ITL NS +STKNGGKF ID + G +P+S+PSSSFD G S D+GSGSWA LLY GFVMSST+ G G+CSKPEVE+ HVSCTEDAAAFVALAAA+DLSMDACR FS KLRKELRQ E
Sbjct: 1 MDPCTFVRIVIRNLALKFSAVHPPSSDSSPCFCKIKLNSFPTQIASLPLISRDDGHVPSLAAASFSLNKSQFDKLVEKSSTTRKPSCLKIDIYRGWRGDTCGLNCGKLLGSVSLPLDLKGAESRNCVFQNGWVSIGECEKGTSSAILHLNVRAEPDPRFVFQFDGEPECSPQVFQINGNIRQPVFTCKFSFRNSG-DRNLRSRSSLSEQSTPRSWLSSLKIDKEQHAKERKGWSIIIHDLSGSPVAAASMVTPFVPSPGTDRVSRSNPGAWLILRPGYGTWKPWGRLEAWRERGDHLGYRFELLPDASTGGIDTITLANSTISTKNGGKFTIDINAGATPVSSPSSSFDFG--SGCDIGSGSWAQLLYEGFVMSSTLEGVGRCSKPEVEVGVQHVSCTEDAAAFVALAAAVDLSMDACRLFSHKLRKELRQQSQE 432
BLAST of XM_017398985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7ET58 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g106690.3.1}))
HSP 1 Score: 490.345 bits (1261), Expect = 3.152e-170
Identity = 276/439 (62.87%), Postives = 321/439 (73.12%), Query Frame = 0
Match: A0A3Q7ET58 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g106690.3.1}))
HSP 1 Score: 490.345 bits (1261), Expect = 3.152e-170
Identity = 276/439 (62.87%), Postives = 321/439 (73.12%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKF-----GVLKSDTFCYCKIKLRDFATQTSKICVVLQENQQI-DDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFAGKGEISCGFGGGKKIGSV--SLDLKSVEN---RVCVIQNGWVEIGNG--VKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHPKERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFDSGSISSSDV------GSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 420
MDPCPFVRIV+ LALKF +L +++ CKIKLR + Q+S I +QE + I D++IH FN KS+ K +EKS V P C+K+EI+ GK + G+G + +GSV LDLKS+EN R VI NGWV +G G +LNLNVR EPDPRFVFQFDGEPECSPQVFQVNGNV+Q VFTC+F FRNSG +RNLR+RS SE + S SC S SD+EI KERKGWSIT+HDLSGSPVA ASMVTPFVPS G++RV +SNPG+WLIL PG TWKPWGRLEAW E+ LGY+FE PDG DAITL NS +STK GGK ID G +P+++P+SSFD S S S GSGSWA LLYRGFVMS TV G GKC+KPEVE+ HVSC EDAAAFVALAAAMDLS+DACRSFS KLRKELRQ E
Sbjct: 1 MDPCPFVRIVIGGLALKFPSESSKILPNNSTFDCKIKLRGCSAQSSTISAFVQEREVILDNRIHGCFNFSKSELVKFVEKSNVRGNPSCLKIEIYGGK--VGFGYGSKRLLGSVVVPLDLKSLENIGHRGFVIHNGWVSVGCGSTAELNLNVRAEPDPRFVFQFDGEPECSPQVFQVNGNVKQPVFTCKFSFRNSG-DRNLRSRSSLSEPSTSTSCFGSCTSDREISVKERKGWSITVHDLSGSPVAAASMVTPFVPSQGSDRVSKSNPGSWLILRPGDNTWKPWGRLEAWRERNGELGYRFEIIPDGATDAITLVNSTISTKKGGKIGIDIINGATPLTSPNSSFDLSSGSGSGSDFGSQPGSGSWAQLLYRGFVMSGTVGGEGKCTKPEVEVGVQHVSCAEDAAAFVALAAAMDLSIDACRSFSQKLRKELRQQDQE 436
BLAST of XM_017398985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0I7E5 ((Putative ovule protein {ECO:0000313|EMBL:JAP28468.1}))
HSP 1 Score: 487.263 bits (1253), Expect = 4.905e-169
Identity = 274/438 (62.56%), Postives = 322/438 (73.52%), Query Frame = 0
Match: A0A0V0I7E5 ((Putative ovule protein {ECO:0000313|EMBL:JAP28468.1}))
HSP 1 Score: 487.263 bits (1253), Expect = 4.905e-169
Identity = 274/438 (62.56%), Postives = 322/438 (73.52%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKF----GVLKSDTFCYCKIKLRDFATQTSKICVVLQENQQI-DDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFAGKGEISCGFGGGKKIGSV--SLDLKSVEN---RVCVIQNGWVEIGNG--VKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHPKERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFD--SGSISSSDV----GSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 420
MDPCPFVRIV+ LALKF + + + CKIKLR + Q++ I +QE + I D++IH FN KS+ K +EKS V + C+K+EI+ GK + G+G + +GSV LDLKS+EN R VIQNGWV +G G +LNLNVR EPDPRFVFQFDGE ECSPQVFQVNGNV+Q VFTC+F FRNSG +RNLR+RS SE++ S SC SDKE KERKGWSIT+HDLSGSPVA ASMVTPFVPS G++RV +SNPG+WLIL PG TWKPWGRLEAW E+ LGY+FE PDG DAITL NS +STK GGK ID G +P+++P+SSFD SGS+S S+ GSGSW LLYRGFVMS+TV G GKCSKPEVE+ HVSC EDAAAFVALAAAMDLS+DACRSFS KLRKELRQ E
Sbjct: 1 MDPCPFVRIVIGGLALKFPSESKIPPNSSTFDCKIKLRGCSAQSTTIPAFVQEREAIVDNRIHGCFNFSKSELVKFVEKSNVRGKSSCLKIEIYGGK--VGFGYGSKRLLGSVVVPLDLKSLENIGHRGFVIQNGWVSVGGGSTAQLNLNVRAEPDPRFVFQFDGEAECSPQVFQVNGNVKQPVFTCKFSFRNSG-DRNLRSRSSLSETSTSTSCFGLCTSDKETSVKERKGWSITVHDLSGSPVAAASMVTPFVPSQGSDRVSKSNPGSWLILRPGDNTWKPWGRLEAWRERNGELGYRFEIIPDGATDAITLVNSTISTKKGGKIGIDIINGATPLTSPNSSFDLSSGSVSGSEFGSQPGSGSWTQLLYRGFVMSATVGGEGKCSKPEVEVGVQHVSCAEDAAAFVALAAAMDLSIDACRSFSQKLRKELRQQDQE 435
BLAST of XM_017398985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2CJ69 ((Uncharacterized protein {ECO:0000313|EMBL:TMX04962.1}) (Fragment))
HSP 1 Score: 485.723 bits (1249), Expect = 2.375e-168
Identity = 274/438 (62.56%), Postives = 319/438 (72.83%), Query Frame = 0
Match: A0A6N2CJ69 ((Uncharacterized protein {ECO:0000313|EMBL:TMX04962.1}) (Fragment))
HSP 1 Score: 485.723 bits (1249), Expect = 2.375e-168
Identity = 274/438 (62.56%), Postives = 319/438 (72.83%), Query Frame = 0
Query: 2 DPCPFVRIVVKNLALKF-----GVLKSDTFCYCKIKLRDFATQTSKICVVLQENQQI-DDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFAGKGEISCGFGGGKKIGSV--SLDLKSVEN---RVCVIQNGWVEIGNG--VKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHPKERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFDSGSISSSDV------GSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 420
DPCPFVRIV+ LALKF +L +++ CKIKLR Q++ I +QE + I D++IH FN KS+ K +EKS V P C+K+EI+ GK + G+G + +GSV LDLKS+EN R VI +GWV +G G +LNLNVR EPDPRFVFQFDGEPECSPQVFQVNGNV+Q VFTC+F FRNSG +RNLR+RS SE + S SC S SDKEI KERKGWSIT+HDLSGSPVA ASMVTPFVPS G++RV +SNPG+WLIL PG TWKPWGRLEAW E+ LGY+FE PDG DAITL NS +STK GGK ID G +P+++P+SSFD S S S GSGSWA LLYRGFVMS TV G GKC+KPEVE+ HVSC EDAAAFVALAAAMDLS+DACRSFS KLRKELRQ E
Sbjct: 1 DPCPFVRIVIGGLALKFPSESSKILPNNSTFDCKIKLRGCLAQSTTISAFVQEREVIVDNRIHGCFNFSKSELVKFVEKSNVRGNPSCLKIEIYGGK--VGFGYGSKRLLGSVVVPLDLKSLENIGHRGFVIHSGWVSVGCGSTAELNLNVRAEPDPRFVFQFDGEPECSPQVFQVNGNVKQPVFTCKFSFRNSG-DRNLRSRSSLSEPSTSTSCFGSCTSDKEISVKERKGWSITVHDLSGSPVAAASMVTPFVPSQGSDRVSKSNPGSWLILRPGDNTWKPWGRLEAWRERNGELGYRFEIIPDGATDAITLVNSTISTKKGGKIGIDIINGATPLTSPNSSFDLSSGSGSGSDFGSQPGSGSWAQLLYRGFVMSGTVGGEGKCTKPEVEVGVQHVSCAEDAAAFVALAAAMDLSIDACRSFSQKLRKELRQQDQE 435
BLAST of XM_017398985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1A2C9 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400013135}))
HSP 1 Score: 484.567 bits (1246), Expect = 4.342e-168
Identity = 275/438 (62.79%), Postives = 323/438 (73.74%), Query Frame = 0
Match: M1A2C9 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400013135}))
HSP 1 Score: 484.567 bits (1246), Expect = 4.342e-168
Identity = 275/438 (62.79%), Postives = 323/438 (73.74%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKF----GVLKSDTFCYCKIKLRDFATQTSKICVVLQENQQI-DDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFAGKGEISCGFGGGKKIGSV--SLDLKSVEN---RVCVIQNGWVEIGNG--VKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHPKERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFD--SGSISSSDV----GSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 420
MDPCPFVRIV+ LALKF + + + CKIKLR + Q++ I +QE + I D++IH FN KS+ K +EK S C+K+EI+ GK + G+G + +GSV LDLKS+EN R VIQNGWV +G G +LNLNVR EPDPRFVFQFDGE ECSPQVFQVNGNV+Q VFTC+F FRNSG +RNLR+RS SE++ S SC S SDKEI KERKGWSIT+HDLSGSPVA ASMVTPFVPS G++RV +SNPG+WLIL PG TWKPWGRLEAW E+ LGY+FE PDG DAITL NS +STK GGK ID G +P+++P+SSFD SGS+S S+ GSGSWA +LYRGFVMS+TV G GKCSKPEVE+ HVSC EDAAAFVALAAAMDLS+DACRSFS KLRKELRQ E
Sbjct: 1 MDPCPFVRIVIGGLALKFPSESKIPPNSSTFDCKIKLRGCSAQSTTIPAFVQEREAIVDNRIHGCFNFSKSELVKFVEKGKSS----CLKIEIYGGK--VGFGYGSKRLLGSVVVPLDLKSLENIGHRGFVIQNGWVSVGGGSTAQLNLNVRAEPDPRFVFQFDGEAECSPQVFQVNGNVKQPVFTCKFSFRNSG-DRNLRSRSSLSETSTSTSCFGSCTSDKEISVKERKGWSITVHDLSGSPVAAASMVTPFVPSQGSDRVSKSNPGSWLILRPGDNTWKPWGRLEAWRERNGELGYRFEIIPDGATDAITLVNSTISTKKGGKIGIDIINGATPLTSPNSSFDLSSGSVSGSEFGSQPGSGSWAQMLYRGFVMSATVGGEGKCSKPEVEVGVQHVSCAEDAAAFVALAAAMDLSIDACRSFSQKLRKELRQQDQE 431
BLAST of XM_017398985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6ISZ8 ((Uncharacterized protein {ECO:0000313|EMBL:OIS98272.1}))
HSP 1 Score: 484.567 bits (1246), Expect = 5.965e-168
Identity = 274/439 (62.41%), Postives = 320/439 (72.89%), Query Frame = 0
Match: A0A1J6ISZ8 ((Uncharacterized protein {ECO:0000313|EMBL:OIS98272.1}))
HSP 1 Score: 484.567 bits (1246), Expect = 5.965e-168
Identity = 274/439 (62.41%), Postives = 320/439 (72.89%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKFGV---LKSDTFCYCKIKLRDFATQTSKICVVLQENQQIDDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFAGKGEISCGFGGGKKIGS---VSLDLKSVEN---RVCVIQNGWVEIG---NGVKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHP-KERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFD------SGSISSSDVGSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 420
MDPCPFVRIV+ NLALKF L S T CK KLR F+TQ S I +Q+ +D++ H+ FNL K++ +KL+EKS + + +K+EIFA + I CG G K+ V LDLK +E+ R VIQN WV +G +L+LNV+ EPDPRFVFQFDGEPECSPQVFQVNGNV+Q VFTC+F FR S G+RNLR+RS SE N S SC S DKE P KERKGWSITIHDLSGSP+A ASM+TPFVPS G+N V RSNPGAWLIL P TWKPWGRLEAW E+G LGY+FE PDG DAITL+NS +STKNGGKF +D + G +P+++P+SSFD SGS S GSGSWA LLYRGFVMSSTV G GKCSKPEV + HV+C EDAAAFVALAAAMDLSMDAC+SF+ KLRKELRQ HE
Sbjct: 1 MDPCPFVRIVIGNLALKFPAEHKLSSSTVFDCKFKLRGFSTQVSTISAFVQD-PVLDNRTHSCFNLNKTELDKLVEKSSIRGKTCSLKIEIFARRKGIGCGLLNGGKLLGSVVVPLDLKGLESNGRRGVVIQNEWVLVGGSSTAAQLHLNVKAEPDPRFVFQFDGEPECSPQVFQVNGNVKQPVFTCKFSFR-SNGDRNLRSRSSLSEPNTSTSCFNSCPVDKESSPLKERKGWSITIHDLSGSPIAAASMITPFVPSQGSNNVSRSNPGAWLILRPSNGTWKPWGRLEAWRERGGDLGYRFEIIPDGATDAITLSNSTISTKNGGKFSVDITNGATPLTSPNSSFDLCSGSGSGSDFGSAPGSGSWAQLLYRGFVMSSTVEGDGKCSKPEVVVGVQHVNCVEDAAAFVALAAAMDLSMDACQSFTKKLRKELRQSDHE 437
BLAST of XM_017398985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YGZ1 ((uncharacterized protein LOC104246980 {ECO:0000313|RefSeq:XP_009801206.1}))
HSP 1 Score: 482.256 bits (1240), Expect = 4.104e-167
Identity = 274/437 (62.70%), Postives = 322/437 (73.68%), Query Frame = 0
Match: A0A1U7YGZ1 ((uncharacterized protein LOC104246980 {ECO:0000313|RefSeq:XP_009801206.1}))
HSP 1 Score: 482.256 bits (1240), Expect = 4.104e-167
Identity = 274/437 (62.70%), Postives = 322/437 (73.68%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKFGV---LKSDTFCYCKIKLRDFATQTSKICVVLQENQQIDDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFA-GKGEISCGFGGGKKIGSVSLDLKSVEN---RVCVIQNGWVEIG---NGVKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHP-KERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFD------SGSISSSDVGSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 420
MDPCPFVRIV+ NLALKF L S T CK KLR F+TQ S I +Q+ +D++ H+ FNL K++ +KL+EKS + +K+EIFA KG GGK +GSV +DLK +E+ R VIQN WV +G +L+LNV+ EPDPRFVFQFDGEPECSPQVFQVNGNV+Q VFTC+F FRN+G +RNLR+RS S+ + S SC S SDKE P KERKGWSITIHDLSGSP+A ASMVTPFVPS G++ V RSNPGAWLIL PG TWKPWGRLEAW E+G LGY+FE PDG DAITL+NS +STKNGGKF +D + G +P+++P+SSFD SGS S GSGSWA LLYRGFVMSSTV G GKCSKPEV + HV+C EDAAAFVALAAAMDLSMDAC+SF+ KLRKELRQ E
Sbjct: 1 MDPCPFVRIVIGNLALKFPAEHKLSSSTVFDCKFKLRGFSTQVSTISAFVQD-PILDNRTHSCFNLNKTELDKLVEKSTAKGKTCSLKIEIFARKKGIGCGLLNGGKLLGSVIVDLKGLESDGRRGVVIQNEWVLVGGSSTAAQLHLNVKAEPDPRFVFQFDGEPECSPQVFQVNGNVKQPVFTCKFSFRNNG-DRNLRSRSSLSKPSTSTSCFNSCTSDKESSPLKERKGWSITIHDLSGSPIAAASMVTPFVPSQGSSNVSRSNPGAWLILRPGNGTWKPWGRLEAWQERGGDLGYRFEIIPDGATDAITLSNSTISTKNGGKFGVDITNGATPLTSPNSSFDLCSGSGSGSDFGSAPGSGSWAQLLYRGFVMSSTVEGEGKCSKPEVVVGVQHVNCVEDAAAFVALAAAMDLSMDACQSFTKKLRKELRQSDQE 435
BLAST of XM_017398985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3Z7N9 ((uncharacterized protein LOC107783718 {ECO:0000313|RefSeq:XP_016460222.1}))
HSP 1 Score: 482.256 bits (1240), Expect = 4.104e-167
Identity = 274/437 (62.70%), Postives = 322/437 (73.68%), Query Frame = 0
Match: A0A1S3Z7N9 ((uncharacterized protein LOC107783718 {ECO:0000313|RefSeq:XP_016460222.1}))
HSP 1 Score: 482.256 bits (1240), Expect = 4.104e-167
Identity = 274/437 (62.70%), Postives = 322/437 (73.68%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKFGV---LKSDTFCYCKIKLRDFATQTSKICVVLQENQQIDDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFA-GKGEISCGFGGGKKIGSVSLDLKSVEN---RVCVIQNGWVEIG---NGVKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHP-KERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFD------SGSISSSDVGSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 420
MDPCPFVRIV+ NLALKF L S T CK KLR F+TQ S I +Q+ +D++ H+ FNL K++ +KL+EKS + +K+EIFA KG GGK +GSV +DLK +E+ R VIQN WV +G +L+LNV+ EPDPRFVFQFDGEPECSPQVFQVNGNV+Q VFTC+F FRN+G +RNLR+RS S+ + S SC S SDKE P KERKGWSITIHDLSGSP+A ASMVTPFVPS G++ V RSNPGAWLIL PG TWKPWGRLEAW E+G LGY+FE PDG DAITL+NS +STKNGGKF +D + G +P+++P+SSFD SGS S GSGSWA LLYRGFVMSSTV G GKCSKPEV + HV+C EDAAAFVALAAAMDLSMDAC+SF+ KLRKELRQ E
Sbjct: 1 MDPCPFVRIVIGNLALKFPAEHKLSSSTVFDCKFKLRGFSTQVSTISAFVQD-PILDNRTHSCFNLNKTELDKLVEKSTAKGKTCSLKIEIFARKKGIGCGLLNGGKLLGSVIVDLKGLESDGRRGVVIQNEWVLVGGSSTAAQLHLNVKAEPDPRFVFQFDGEPECSPQVFQVNGNVKQPVFTCKFSFRNNG-DRNLRSRSSLSKPSTSTSCFNSCTSDKESSPLKERKGWSITIHDLSGSPIAAASMVTPFVPSQGSSNVSRSNPGAWLILRPGNGTWKPWGRLEAWQERGGDLGYRFEIIPDGATDAITLSNSTISTKNGGKFGVDITNGATPLTSPNSSFDLCSGSGSGSDFGSAPGSGSWAQLLYRGFVMSSTVEGEGKCSKPEVVVGVQHVNCVEDAAAFVALAAAMDLSMDACQSFTKKLRKELRQSDQE 435
BLAST of XM_017398985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7CCA2 ((Putative Formin-like protein 18 {ECO:0000313|EMBL:MPA77981.1}) (Fragment))
HSP 1 Score: 483.411 bits (1243), Expect = 6.658e-167
Identity = 280/442 (63.35%), Postives = 327/442 (73.98%), Query Frame = 0
Match: A0A5B7CCA2 ((Putative Formin-like protein 18 {ECO:0000313|EMBL:MPA77981.1}) (Fragment))
HSP 1 Score: 483.411 bits (1243), Expect = 6.658e-167
Identity = 280/442 (63.35%), Postives = 327/442 (73.98%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKF---------GVLKSDTFCYCKIKLRDFATQTSKICVVLQENQQIDDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFAGKGEISCGFGGGKKIGSVS--LDLKSVE-NRVCVIQNGWVEIG-----NGVKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHP-KERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEK--GDHLGYKFEHFPD---GGIDAITLTNSKLSTKNGGKFIIDNST-GPSPMSTPSSSFD--SGSISSSDVGSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQ 416
MDPCPFVRIV+ NLALKF G+ S + C+CKIKL +F +QT+ I ++ + + A FNL KS +KL+EKS S + C+K++I+ G+ CG GK +GS++ LDLK E ++ CVIQNGWV IG + +L+LNVR EPDPRFVFQFDG+PECSPQVFQVNGNVRQ VFTC+F FRNSG +RNLR+RS SE RS L+SL+ DKE P KERKGWSITIHDLSGSPVA ASMVTPFVPS GT+RV RSNPGAWLIL PG+ TWKPWGRLEAW E+ GDHLGY+F PD GG+D ITL +S LSTK GGKF ID ST SP+++ SSFD SGS S S++GSGSWA LLY GFVMSSTV G+CSKPEVE+ HVSCTEDAA FVALAAAMDLS+DACR FS KLRKELRQ
Sbjct: 37 MDPCPFVRIVIGNLALKFPVASKPAFSGIHSSSSPCFCKIKLNNFPSQTASIPLISHHDDHVPSLSAACFNLNKSQIDKLVEKS--SSKSHCLKIDIYTGRRGNICGLNSGKLLGSITVPLDLKGAEYSKGCVIQNGWVLIGESGKGSSAQLHLNVRAEPDPRFVFQFDGQPECSPQVFQVNGNVRQPVFTCKFSFRNSG-DRNLRSRSSLSEQRTPRSYLSSLKQDKEQRPVKERKGWSITIHDLSGSPVAAASMVTPFVPSPGTDRVSRSNPGAWLILRPGRGTWKPWGRLEAWSERSGGDHLGYQFGLLPDADAGGVDTITLASSTLSTKKGGKFTIDISTDASSPVNSRKSSFDLWSGSGSGSEIGSGSWAQLLYEGFVMSSTV---GRCSKPEVEVGVQHVSCTEDAAVFVALAAAMDLSVDACRLFSEKLRKELRQ 472
BLAST of XM_017398985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4BFY3 ((uncharacterized protein LOC107807834 {ECO:0000313|RefSeq:XP_016487758.1}))
HSP 1 Score: 480.715 bits (1236), Expect = 2.363e-166
Identity = 270/439 (61.50%), Postives = 320/439 (72.89%), Query Frame = 0
Match: A0A1S4BFY3 ((uncharacterized protein LOC107807834 {ECO:0000313|RefSeq:XP_016487758.1}))
HSP 1 Score: 480.715 bits (1236), Expect = 2.363e-166
Identity = 270/439 (61.50%), Postives = 320/439 (72.89%), Query Frame = 0
Query: 1 MDPCPFVRIVVKNLALKFGV---LKSDTFCYCKIKLRDFATQTSKICVVLQENQQIDDQIHASFNLKKSDFEKLMEKSGVSKRPFCVKVEIFAGKGEISCGFGGGKKIGS---VSLDLKSVEN---RVCVIQNGWVEIG---NGVKLNLNVRIEPDPRFVFQFDGEPECSPQVFQVNGNVRQAVFTCEFGFRNSGGERNLRTRSIESESNKSRSCLTSLRSDKEIHP-KERKGWSITIHDLSGSPVACASMVTPFVPSSGTNRVCRSNPGAWLILTPGQATWKPWGRLEAWLEKGDHLGYKFEHFPDGGIDAITLTNSKLSTKNGGKFIIDNSTGPSPMSTPSSSFD------SGSISSSDVGSGSWAHLLYRGFVMSSTVMGGGKCSKPEVEISTHHVSCTEDAAAFVALAAAMDLSMDACRSFSSKLRKELRQPGHE 420
MDPCPFVRIV+ NLALKF L S T CK KLR F+TQ S I +Q+ ++++ H+ FNL K++ +KL+EKS + + +K+EIFA K I CG G K+ V LDLK +E+ R VIQ+ WV +G +L+LNV+ EPDPRFVFQFDGEPECSPQV+QVNGNV+Q VFTC+F FRN+G +RNLR+RS SE + S SC S +DKE+ ERKGWSITIHDLSGSP+A ASMVTPFVPS G+N V RSNPGAWLIL PG TWKPWGRLEAW E G LGY+FE PDG DAITL+NS +STKNGGKF +D + G +P+++P+SSFD SGS S GSGSWA LLYRGFVMSSTV G GKCSKPEV + HV+C EDAAAFVALAAAMDLSMDAC+SF+ KLRKELRQ E
Sbjct: 1 MDPCPFVRIVIGNLALKFPAEHKLSSSTVFDCKFKLRSFSTQISTIPAFIQD-PILENRTHSCFNLNKTELDKLVEKSSIRGKTCSLKIEIFARKKGIGCGLLKGGKLLGSVLVPLDLKGLESNGRRGVVIQDEWVLVGRSSTAAQLHLNVKAEPDPRFVFQFDGEPECSPQVYQVNGNVKQPVFTCKFSFRNNG-DRNLRSRSSLSEPSTSTSCFNSCTADKELSSLTERKGWSITIHDLSGSPIAAASMVTPFVPSQGSNNVSRSNPGAWLILRPGNGTWKPWGRLEAWREHGGDLGYRFEIIPDGATDAITLSNSTISTKNGGKFSVDITNGATPLTSPNSSFDLCSGSGSGSDFGSAPGSGSWAQLLYRGFVMSSTVEGDGKCSKPEVVVGVQHVNCAEDAAAFVALAAAMDLSMDACQSFTKKLRKELRQSDQE 437
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5B378 | E-Value: 0.000e+0, PID: 65.29 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8536... [more] |
| A0A3Q7ET58 | E-Value: 3.152e-170, PID: 62.87 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A0V0I7E5 | E-Value: 4.905e-169, PID: 62.56 | (Putative ovule protein {ECO:0000313|EMBL:JAP28468... [more] |
| A0A6N2CJ69 | E-Value: 2.375e-168, PID: 62.56 | (Uncharacterized protein {ECO:0000313|EMBL:TMX0496... [more] |
| M1A2C9 | E-Value: 4.342e-168, PID: 62.79 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A1J6ISZ8 | E-Value: 5.965e-168, PID: 62.41 | (Uncharacterized protein {ECO:0000313|EMBL:OIS9827... [more] |
| A0A1U7YGZ1 | E-Value: 4.104e-167, PID: 62.70 | (uncharacterized protein LOC104246980 {ECO:0000313... [more] |
| A0A1S3Z7N9 | E-Value: 4.104e-167, PID: 62.70 | (uncharacterized protein LOC107783718 {ECO:0000313... [more] |
| A0A5B7CCA2 | E-Value: 6.658e-167, PID: 63.35 | (Putative Formin-like protein 18 {ECO:0000313|EMBL... [more] |
| A0A1S4BFY3 | E-Value: 2.363e-166, PID: 61.50 | (uncharacterized protein LOC107807834 {ECO:0000313... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |