Resource Type:
Polypeptide
Name:
XM_017359528.1
Identifier:
XM_017359528.1-protein
Sequence:
MGALLSLNNTRARTNNLYEVSSSEACKRQRTSSSFWEDNPRLIPSLPDEI
SIQILARLPRICYLDMKLVSRSWKAVITSAELYKLRKELGTAEQWLYILT
KFDGDKLVWFALDPHSKRWQKLPLMPNVAAEDGSRRGLSALNVWHMVGSS
IKIADAVRGWLGRRPALDQIPFCGCAVAAVDGCLYVIGGFSKALPMKCVR
KYDPTLNVWSEVSSMSVGRAYCKTSVLNNKLFVVGGVSRGRGGLTPLQSA
EVFDPQTGAWSEVPSMPFSKAQVLPTAFLADLLKPIATGMTSYKGKLYVS
QSLYCWPFFVDVGGEVYDPDSNSWFEMPVGMGEGWPARQAGTKVSVIVED
DLYALDPSTSLDSARIKTYDYEGDTWKVVDGDVPIRDFAESESPYLLSGL
LGKLHVITKDANQNILVMQADKQNHLESSASTADLIQGSLQESVVQSETN
IWTVIATKNASSAELISCQVLDM
Sequence Length:
473
Sequence Checksum:
8a6735bbce5c69e603373a774505aeb8
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017359528.1, derives from mRNA, XM_017359528.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017359528.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017359528.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BSA4 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 740.339 bits (1910), Expect = 0.000e+0
Identity = 370/477 (77.57%), Postives = 417/477 (87.42%), Query Frame = 0
Match: A0A5J5BSA4 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 740.339 bits (1910), Expect = 0.000e+0
Identity = 370/477 (77.57%), Postives = 417/477 (87.42%), Query Frame = 0
Query: 1 MGALLSLNNTRARTNNLYEVSSSEACKRQRTSSSFWEDNPRLIPSLPDEISIQILARLPRICYLDMKLVSRSWKAVITSAELYKLRKELGTAEQWLYILTKFDGDKLVWFALDPHSKRWQKLPLMPNVAAEDGSRRGLSALNVWHMVGSSIKIADAVRGWLGRRPALDQIPFCGCAVAAVDGCLYVIGGFSKALPMKCVRKYDPTLNVWSEVSSMSVGRAYCKTSVLNNKLFVVGGVSRGRGGLTPLQSAEVFDPQTGAWSEVPSMPFSKAQVLPTAFLADLLKPIATGMTSYKGKLYVSQSLYCWPFFVDVGGEVYDPDSNSWFEMPVGMGEGWPARQAGTKVSVIVEDDLYALDPSTSLDSARIKTYDYEGDTWKVVDGDVPIRDFAESESPYLLSGLLGKLHVITKDANQNILVMQADKQNHLESSASTA----DLIQGSLQESVVQSETNIWTVIATKNASSAELISCQVLDM 473
MGA+LSLN++RARTN+LYEVS SE CKRQRTSSS+ EDN RLIPSLPDEISIQILARLPRI YLD+KLVSRSWKA I S ELYK+RKELGT E+WLYILTK D DKL+W+ALDP S +WQ+LP MPN+A +D S+RGLS L +W+MVGSSIKIADA+RGWLGR+ ALD++PFCGCA+ AVDGCLYV+GGFSKA M CV +YDP LN+WSEVSSMS+GRAYCKT VLNNKLFVVGGVSRGRGGLTPLQSAEVFDP TG WS+VPSMPFSKAQVLPTAFLADLLKPIATGMTSY+GKLYV QSLYCWPFFVDVGGEVYDP++NSW EMP GMGEGWPARQAGTK+SVIV+ +LYALDP++SLDSA+IK YDYE DTWK+V GDVPIR F +SESPYLL+G L KLHVITKDAN I VMQ+D+QNHL S AST+ D L ESV SETN+W VIAT+NA AEL+SC +LD+
Sbjct: 58 MGAILSLNSSRARTNDLYEVSQSETCKRQRTSSSYCEDNQRLIPSLPDEISIQILARLPRIRYLDVKLVSRSWKAAILSLELYKIRKELGTTEEWLYILTKVDDDKLMWYALDPLSSKWQRLPPMPNLAKDDESKRGLSGLRMWNMVGSSIKIADAIRGWLGRKDALDRMPFCGCAIGAVDGCLYVLGGFSKASAMSCVWRYDPILNMWSEVSSMSIGRAYCKTGVLNNKLFVVGGVSRGRGGLTPLQSAEVFDPLTGLWSQVPSMPFSKAQVLPTAFLADLLKPIATGMTSYRGKLYVPQSLYCWPFFVDVGGEVYDPETNSWVEMPSGMGEGWPARQAGTKLSVIVDGNLYALDPASSLDSAKIKVYDYEDDTWKIVAGDVPIRGFTDSESPYLLAGFLRKLHVITKDANY-IAVMQSDRQNHLRSIASTSSTPLDDASHELSESVAGSETNVWKVIATRNAGPAELVSCLILDI 533
BLAST of XM_017359528.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AII0 ((Putative F-box domain, cyclin-like protein {ECO:0000313|EMBL:MPA56540.1}))
HSP 1 Score: 738.028 bits (1904), Expect = 0.000e+0
Identity = 365/477 (76.52%), Postives = 415/477 (87.00%), Query Frame = 0
Match: A0A5B7AII0 ((Putative F-box domain, cyclin-like protein {ECO:0000313|EMBL:MPA56540.1}))
HSP 1 Score: 738.028 bits (1904), Expect = 0.000e+0
Identity = 365/477 (76.52%), Postives = 415/477 (87.00%), Query Frame = 0
Query: 1 MGALLSLNNTRARTNNLYEVSSSEACKRQRTSSSFWEDNPRLIPSLPDEISIQILARLPRICYLDMKLVSRSWKAVITSAELYKLRKELGTAEQWLYILTKFDGDKLVWFALDPHSKRWQKLPLMPNVAAEDGSRRGLSALNVWHMVGSSIKIADAVRGWLGRRPALDQIPFCGCAVAAVDGCLYVIGGFSKALPMKCVRKYDPTLNVWSEVSSMSVGRAYCKTSVLNNKLFVVGGVSRGRGGLTPLQSAEVFDPQTGAWSEVPSMPFSKAQVLPTAFLADLLKPIATGMTSYKGKLYVSQSLYCWPFFVDVGGEVYDPDSNSWFEMPVGMGEGWPARQAGTKVSVIVEDDLYALDPSTSLDSARIKTYDYEGDTWKVVDGDVPIRDFAESESPYLLSGLLGKLHVITKDANQNILVMQADKQNHLESSASTA----DLIQGSLQESVVQSETNIWTVIATKNASSAELISCQVLDM 473
MGA+LSLN +RART YEVS SE CKRQRTSSS+ E+N RLIPSLPDE+SIQILARLPRI YLD+KLVSRSWKA I S ELYK+RKELGT E+WLYILTK D DKL+W+ALDP S +WQ+LP MPN+A EDGS+RGLS+L +W+MVGSSI+IADA+RGWLGR+ ALD++PFCGCA+ AVDGCLYV+GGFSKA M CV +YDP LN+WSEVS MS+GRAYCKT VLNNKL+VVGGVSRGRGGLTPLQSAEVFDP TG WS+VPSMPFSKAQVLPTAFLADLLKPIATGMTSY+GKLYV QSLYCWPFFVDVGGEVYDP++NSW EMP GMGEGWPARQAGTK+SVIV+ +LYALDPS+SLDSA+IK YDYE DTWK+V GDVPIRDFA+SESPYLL+G L KLHVITKD N NI VMQAD+Q+HL S ST+ D L ESV SE N+W VIAT++A +AEL+SC +LD+
Sbjct: 1 MGAILSLNGSRARTTEFYEVSQSETCKRQRTSSSYCEENQRLIPSLPDELSIQILARLPRIRYLDVKLVSRSWKAAILSLELYKIRKELGTTEEWLYILTKVDDDKLMWYALDPLSSKWQRLPPMPNIATEDGSKRGLSSLRMWNMVGSSIRIADAIRGWLGRKDALDRMPFCGCAIGAVDGCLYVLGGFSKASAMSCVWRYDPILNMWSEVSPMSIGRAYCKTGVLNNKLYVVGGVSRGRGGLTPLQSAEVFDPLTGLWSQVPSMPFSKAQVLPTAFLADLLKPIATGMTSYRGKLYVPQSLYCWPFFVDVGGEVYDPETNSWVEMPSGMGEGWPARQAGTKLSVIVDGNLYALDPSSSLDSAKIKVYDYEDDTWKIVAGDVPIRDFADSESPYLLAGFLRKLHVITKDVNNNIAVMQADRQHHLCSVPSTSSTPLDDASHELSESVAGSEANVWKVIATRSAGAAELVSCLILDI 477
BLAST of XM_017359528.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VUV8 ((F-box/kelch-repeat protein At1g22040-like {ECO:0000313|RefSeq:XP_027106320.1}))
HSP 1 Score: 720.309 bits (1858), Expect = 0.000e+0
Identity = 352/479 (73.49%), Postives = 402/479 (83.92%), Query Frame = 0
Match: A0A6P6VUV8 ((F-box/kelch-repeat protein At1g22040-like {ECO:0000313|RefSeq:XP_027106320.1}))
HSP 1 Score: 720.309 bits (1858), Expect = 0.000e+0
Identity = 352/479 (73.49%), Postives = 402/479 (83.92%), Query Frame = 0
Query: 1 MGALLSLNNTRARTNNLYEVSSSEACKRQRTSSSFWEDNPRLIPSLPDEISIQILARLPRICYLDMKLVSRSWKAVITSAELYKLRKELGTAEQWLYILTKFDGDKLVWFALDPHSKRWQKLPLMPNVAAEDGSRRGLSALNVWHMVGSSIKIADAVRGWLGRRPALDQIPFCGCAVAAVDGCLYVIGGFSKALPMKCVRKYDPTLNVWSEVSSMSVGRAYCKTSVLNNKLFVVGGVSRGRGGLTPLQSAEVFDPQTGAWSEVPSMPFSKAQVLPTAFLADLLKPIATGMTSYKGKLYVSQSLYCWPFFVDVGGEVYDPDSNSWFEMPVGMGEGWPARQAGTKVSVIVEDDLYALDPSTSLDSARIKTYDYEGDTWKVVDGDVPIRDF--AESESPYLLSGLLGKLHVITKDANQNILVMQADKQNHLES-SASTADLIQGSLQE---SVVQSETNIWTVIATKNASSAELISCQVLDM 473
MG +LS NN +A ++ L ++S E CKRQRTSSSFWEDNPRLIPSLPDEIS+QI+ARLPRI YL+ KLVSRSWKA I S ELY+LRK LGT E+ LYILTK DGDKLVW ALDP S +WQ+LP MPNV EDGSRRG S L VW+MVGSS +IADA+RGWLGR+ ALDQIP+CG AV AVDGCLYV+GGF +A MK V +YDP LN WSEVS MS RAYCKT VLNNKL+VVGGVSRGRG L+PLQSAEVFDP+TG WSEVPSMPFSKAQ++PTAFLAD+LKP+ATGMTSY+GKLYV QSL+CWPFFVDVGGEVYDP++NSW EMP+GMGEGWPARQAGTK+SVIV+ DLYAL+PS+SLDSARIK YD+ DTWK V GDVPIRD ++SESPYLL+G LGKLHVITKDANQNILV+QAD QN L S SAS+ L + S +E V SE +W VIA ++A SAEL+SCQ+LD
Sbjct: 1 MGGILSTNNNKASSSQLCDISQIETCKRQRTSSSFWEDNPRLIPSLPDEISLQIIARLPRIYYLNAKLVSRSWKAAILSPELYRLRKCLGTTEEHLYILTKVDGDKLVWNALDPMSGKWQRLPPMPNVGIEDGSRRGFSGLKVWNMVGSSTRIADAIRGWLGRKDALDQIPYCGGAVGAVDGCLYVLGGFCRATVMKSVWRYDPILNAWSEVSPMSTCRAYCKTGVLNNKLYVVGGVSRGRGVLSPLQSAEVFDPRTGIWSEVPSMPFSKAQMMPTAFLADILKPVATGMTSYRGKLYVPQSLFCWPFFVDVGGEVYDPETNSWVEMPMGMGEGWPARQAGTKLSVIVDGDLYALNPSSSLDSARIKFYDHRDDTWKAVRGDVPIRDLTDSDSESPYLLAGFLGKLHVITKDANQNILVLQADWQNQLASQSASSVSLDESSKEELSVPVAGSEAILWNVIANRSAGSAELVSCQILDF 479
BLAST of XM_017359528.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WBU0 ((F-box/kelch-repeat protein At1g22040-like {ECO:0000313|RefSeq:XP_027112898.1}))
HSP 1 Score: 719.924 bits (1857), Expect = 0.000e+0
Identity = 350/479 (73.07%), Postives = 402/479 (83.92%), Query Frame = 0
Match: A0A6P6WBU0 ((F-box/kelch-repeat protein At1g22040-like {ECO:0000313|RefSeq:XP_027112898.1}))
HSP 1 Score: 719.924 bits (1857), Expect = 0.000e+0
Identity = 350/479 (73.07%), Postives = 402/479 (83.92%), Query Frame = 0
Query: 1 MGALLSLNNTRARTNNLYEVSSSEACKRQRTSSSFWEDNPRLIPSLPDEISIQILARLPRICYLDMKLVSRSWKAVITSAELYKLRKELGTAEQWLYILTKFDGDKLVWFALDPHSKRWQKLPLMPNVAAEDGSRRGLSALNVWHMVGSSIKIADAVRGWLGRRPALDQIPFCGCAVAAVDGCLYVIGGFSKALPMKCVRKYDPTLNVWSEVSSMSVGRAYCKTSVLNNKLFVVGGVSRGRGGLTPLQSAEVFDPQTGAWSEVPSMPFSKAQVLPTAFLADLLKPIATGMTSYKGKLYVSQSLYCWPFFVDVGGEVYDPDSNSWFEMPVGMGEGWPARQAGTKVSVIVEDDLYALDPSTSLDSARIKTYDYEGDTWKVVDGDVPIRDFAESES--PYLLSGLLGKLHVITKDANQNILVMQADKQNHLES-SASTADLIQGSLQE---SVVQSETNIWTVIATKNASSAELISCQVLDM 473
MG +LS NN +A ++ L ++S E CKRQRTSSSFWEDNPRLIPSLPDEIS+QI+ARLPRI YL+ KLVSRSWKA I S ELY+LRK LGT E+ LYILTK DGDKLVW ALDP S +WQ+LP MPNV EDGSRRG S L VW+MVGSS +IADA+RGWLGR+ ALDQIP+CG AV AVDGCLYV+GGF +A MK V +YDP LN WSEVS MS RAYCKT VLNNKL+VVGGVSRGRG L+PLQSAEVFDP+TG WSEVPSMPFSKAQ++PTAFLAD+LKP+ATGMTSY+GKLYV QSL+CWPFFVDVGGEVYDP++NSW EMP+GMGEGWPARQAGTK+SVIV+ DLYALDPS+SLDSARIK YD+ DTWK V GDVPIRD +S+S PYLL+G LGKLHVITKDANQNILV+QAD++N L S SAS+ L + S +E + SE +W VIA ++A SAEL+SCQ+LD
Sbjct: 1 MGGILSTNNNKASSSQLCDISQIETCKRQRTSSSFWEDNPRLIPSLPDEISLQIIARLPRIYYLNAKLVSRSWKAAILSPELYRLRKCLGTTEEHLYILTKVDGDKLVWNALDPMSGKWQRLPPMPNVGIEDGSRRGFSGLKVWNMVGSSTRIADAIRGWLGRKDALDQIPYCGGAVGAVDGCLYVLGGFCRATVMKSVWRYDPILNAWSEVSPMSTCRAYCKTGVLNNKLYVVGGVSRGRGVLSPLQSAEVFDPRTGIWSEVPSMPFSKAQMMPTAFLADILKPVATGMTSYRGKLYVPQSLFCWPFFVDVGGEVYDPETNSWVEMPMGMGEGWPARQAGTKLSVIVDGDLYALDPSSSLDSARIKFYDHRDDTWKAVRGDVPIRDLTDSDSEPPYLLAGFLGKLHVITKDANQNILVLQADRRNQLASQSASSVSLDESSKEELSGPLAGSEAILWNVIANRSAGSAELVSCQILDF 479
BLAST of XM_017359528.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TMA7 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 719.539 bits (1856), Expect = 0.000e+0
Identity = 352/479 (73.49%), Postives = 402/479 (83.92%), Query Frame = 0
Match: A0A068TMA7 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 719.539 bits (1856), Expect = 0.000e+0
Identity = 352/479 (73.49%), Postives = 402/479 (83.92%), Query Frame = 0
Query: 1 MGALLSLNNTRARTNNLYEVSSSEACKRQRTSSSFWEDNPRLIPSLPDEISIQILARLPRICYLDMKLVSRSWKAVITSAELYKLRKELGTAEQWLYILTKFDGDKLVWFALDPHSKRWQKLPLMPNVAAEDGSRRGLSALNVWHMVGSSIKIADAVRGWLGRRPALDQIPFCGCAVAAVDGCLYVIGGFSKALPMKCVRKYDPTLNVWSEVSSMSVGRAYCKTSVLNNKLFVVGGVSRGRGGLTPLQSAEVFDPQTGAWSEVPSMPFSKAQVLPTAFLADLLKPIATGMTSYKGKLYVSQSLYCWPFFVDVGGEVYDPDSNSWFEMPVGMGEGWPARQAGTKVSVIVEDDLYALDPSTSLDSARIKTYDYEGDTWKVVDGDVPIRDF--AESESPYLLSGLLGKLHVITKDANQNILVMQADKQNHLES-SASTADLIQGSLQE---SVVQSETNIWTVIATKNASSAELISCQVLDM 473
MG +LS NN +A ++ L ++S E CKRQRTSSSFWEDNPRLIPSLPDEIS+QI+ARLPRI YL+ KLVSRSWKA I S ELY+LRK LGT E+ LYILTK DGDKLVW ALDP S +WQ+LP MPNV EDGSRRG S L VW+MVGSS +IADA+RGWLGR+ ALDQIP+CG AV AVDGCLYV+GGF +A MK V +YDP LN WSEVS MS RAYCKT VLNNKL+VVGGVSRGRG L+PLQSAEVFDP+TG WSEVPSMPFSKAQ++PTAFLAD+LKP+ATGMTSY+GKLYV QSL+CWPFFVDVGGEVYDP++NSW EMP+GMGEGWPARQAGTK+SVIV+ DLYALDPS+SLDSARIK YD+ DTWK V GDVPIRD ++SESPYLL+G LGKLHVITKDANQNILV+QAD +N L S SAS+ L + S +E V SE +W VIA ++A SAEL+SCQ+LD
Sbjct: 1 MGGILSTNNNKASSSQLCDISQIETCKRQRTSSSFWEDNPRLIPSLPDEISLQIIARLPRIYYLNAKLVSRSWKAAILSPELYRLRKCLGTTEEHLYILTKVDGDKLVWNALDPMSGKWQRLPPMPNVGIEDGSRRGFSGLKVWNMVGSSTRIADAIRGWLGRKDALDQIPYCGGAVGAVDGCLYVLGGFCRATVMKSVWRYDPILNAWSEVSPMSTCRAYCKTGVLNNKLYVVGGVSRGRGVLSPLQSAEVFDPRTGIWSEVPSMPFSKAQMMPTAFLADILKPVATGMTSYRGKLYVPQSLFCWPFFVDVGGEVYDPETNSWVEMPMGMGEGWPARQAGTKLSVIVDGDLYALDPSSSLDSARIKFYDHRDDTWKAVRGDVPIRDLTDSDSESPYLLAGFLGKLHVITKDANQNILVLQADWRNQLASQSASSVSLDESSKEELSVPVAGSEAILWNVIANRSAGSAELVSCQILDF 479
BLAST of XM_017359528.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AM42 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 716.072 bits (1847), Expect = 0.000e+0
Identity = 360/477 (75.47%), Postives = 405/477 (84.91%), Query Frame = 0
Match: A0A5B7AM42 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 716.072 bits (1847), Expect = 0.000e+0
Identity = 360/477 (75.47%), Postives = 405/477 (84.91%), Query Frame = 0
Query: 1 MGALLSLNNTRARTNNLYEVSSSEACKRQRTSSSFWEDNPRLIPSLPDEISIQILARLPRICYLDMKLVSRSWKAVITSAELYKLRKELGTAEQWLYILTKFDGDKLVWFALDPHSKRWQKLPLMPNVAAEDGSRRGLSALNVWHMVGSSIKIADAVRGWLGRRPALDQIPFCGCAVAAVDGCLYVIGGFSKALPMKCVRKYDPTLNVWSEVSSMSVGRAYCKTSVLNNKLFVVGGVSRGRGGLTPLQSAEVFDPQTGAWSEVPSMPFSKAQVLPTAFLADLLKPIATGMTSYKGKLYVSQSLYCWPFFVDVGGEVYDPDSNSWFEMPVGMGEGWPARQAGTKVSVIVEDDLYALDPSTSLDSARIKTYDYEGDTWKVVDGDVPIRDFAESESPYLLSGLLGKLHVITKDANQNILVMQADKQNHLESSASTA----DLIQGSLQESVVQSETNIWTVIATKNASSAELISCQVLDM 473
MGA+LSLN +RART YEVS SE CKRQRTSSS+ E+N RLIPSLPDE+SIQILARLPRI YLD+KLVSRSWKA I S ELYK+RKELGT E+WLYILTK D DKL+W+ALDP S +WQ+LP MPN+A EDGS+RGLS L +W+MVGSSI+IAD +RGWLGR+ ALD++PFCGCA+ AVDGCLYV+GGFSKA M CV +YDP LN+WSEVS MS+GRAYCKT VLNNKL+VVGGVSRGRGGLTPLQSAEVFDP TG WS+VPSMPFSKAQVLPTAFLADLLKPIATGMTSY+GKLYV QSLYCWPFFVDVGGEVYDP++NSW EMP GMGEGWPARQAGTK +LYALDPS+SLDSA+IK YDYE DTWK+V GDVPIRDF +SESPYLL+G L KLHVITKD N NI VMQAD+Q HL S ST+ D L ESV SE NIW VIAT++A +AEL+SC +LD+
Sbjct: 1 MGAILSLNGSRARTTEFYEVSQSETCKRQRTSSSYCEENQRLIPSLPDELSIQILARLPRIRYLDVKLVSRSWKAAILSLELYKIRKELGTTEEWLYILTKVDDDKLMWYALDPLSSKWQRLPPMPNIATEDGSKRGLSGLRMWNMVGSSIRIADVIRGWLGRKDALDRMPFCGCAIGAVDGCLYVLGGFSKASAMSCVWRYDPILNMWSEVSPMSIGRAYCKTGVLNNKLYVVGGVSRGRGGLTPLQSAEVFDPLTGLWSQVPSMPFSKAQVLPTAFLADLLKPIATGMTSYRGKLYVPQSLYCWPFFVDVGGEVYDPETNSWVEMPSGMGEGWPARQAGTKXG-----NLYALDPSSSLDSAKIKVYDYEDDTWKIVAGDVPIRDFTDSESPYLLAGFLRKLHVITKDVNNNIAVMQADRQ-HLCSVPSTSSTPLDDASHELSESVAGSEANIWKVIATRSAGAAELVSCLILDI 471
BLAST of XM_017359528.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A124SF21 ((F-box domain, cyclin-like protein {ECO:0000313|EMBL:KVI01828.1}))
HSP 1 Score: 712.605 bits (1838), Expect = 0.000e+0
Identity = 348/473 (73.57%), Postives = 406/473 (85.84%), Query Frame = 0
Match: A0A124SF21 ((F-box domain, cyclin-like protein {ECO:0000313|EMBL:KVI01828.1}))
HSP 1 Score: 712.605 bits (1838), Expect = 0.000e+0
Identity = 348/473 (73.57%), Postives = 406/473 (85.84%), Query Frame = 0
Query: 1 MGALLSLNNTRARTNNLYEVSSSEACKRQRTSSSFWEDNPRLIPSLPDEISIQILARLPRICYLDMKLVSRSWKAVITSAELYKLRKELGTAEQWLYILTKFDGDKLVWFALDPHSKRWQKLPLMPNVAAEDGSRRGLSALNVWHMVGSSIKIADAVRGWLGRRPALDQIPFCGCAVAAVDGCLYVIGGFSKALPMKCVRKYDPTLNVWSEVSSMSVGRAYCKTSVLNNKLFVVGGVSRGRGGLTPLQSAEVFDPQTGAWSEVPSMPFSKAQVLPTAFLADLLKPIATGMTSYKGKLYVSQSLYCWPFFVDVGGEVYDPDSNSWFEMPVGMGEGWPARQAGTKVSVIVEDDLYALDPSTSLDSARIKTYDYEGDTWKVVDGDVPIRDFAESESPYLLSGLLGKLHVITKDANQNILVMQADKQNHLESSASTADLIQGSLQESVVQSETNIWTVIATKNASSAELISCQVLDM 473
MG LLSLN++R ++VS SE+CKRQ+TSS FW+D PRLIPSLPDEIS++ILARLPRICYL++K VSRSWKA +TS E+YK+RKELGT E+WLYILTK GDKL W ALDP S++WQ+LPL+PNV AED S+RGLS +W+MVGSSI++ADAVRGWLGR+ A DQ+PFCGCA+ AVDGCLY++GGF++A M CV KYDP LN WSE + MSVGRAYCKT VLNNKLFVVGGVSRGRGGLTPLQSAEVFDPQTG WSEVPSMPFSKAQVLPTAFLADLLKPIATG+TSY+GKLYV QSLYCWPFFVDVGGEVYDP++N+W +MP+GMGEGWPA+QAGTK+SVIV+ DLYALDPS+SL+SA+IK YDY+ D+WKVV+GDVPIRDFAESESPYLL+GLLG+LHVITKD + NI VMQADKQN+L + E V SE NIW VIA++N+ S EL+SCQ LD+
Sbjct: 1 MGGLLSLNSSRP--TETFQVSQSESCKRQKTSSCFWDDKPRLIPSLPDEISLEILARLPRICYLNVKAVSRSWKAAVTSPEIYKVRKELGTTEEWLYILTKNQGDKLFWHALDPISRKWQRLPLIPNVPAEDESKRGLSGFRMWNMVGSSIRMADAVRGWLGRKDASDQVPFCGCAIGAVDGCLYMLGGFARASAMSCVWKYDPILNSWSEANPMSVGRAYCKTGVLNNKLFVVGGVSRGRGGLTPLQSAEVFDPQTGLWSEVPSMPFSKAQVLPTAFLADLLKPIATGLTSYRGKLYVPQSLYCWPFFVDVGGEVYDPETNTWVDMPIGMGEGWPAKQAGTKLSVIVDGDLYALDPSSSLESAKIKVYDYQDDSWKVVEGDVPIRDFAESESPYLLAGLLGRLHVITKDGDHNIAVMQADKQNNLVVNPGEGSSESVGTSEPVGTSEPNIWNVIASRNSGSTELVSCQNLDI 471
BLAST of XM_017359528.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U1Y8 ((F-box/kelch-repeat protein At1g22040 {ECO:0000313|RefSeq:XP_011087845.1}))
HSP 1 Score: 707.983 bits (1826), Expect = 0.000e+0
Identity = 349/477 (73.17%), Postives = 409/477 (85.74%), Query Frame = 0
Match: A0A6I9U1Y8 ((F-box/kelch-repeat protein At1g22040 {ECO:0000313|RefSeq:XP_011087845.1}))
HSP 1 Score: 707.983 bits (1826), Expect = 0.000e+0
Identity = 349/477 (73.17%), Postives = 409/477 (85.74%), Query Frame = 0
Query: 1 MGALLSLNNTRARTNNLYEVSSSEACKRQRTSSSFWEDNPRLIPSLPDEISIQILARLPRICYLDMKLVSRSWKAVITSAELYKLRKELGTAEQWLYILTKFDGDKLVWFALDPHSKRWQKLPLMPNVAAEDGSRRGLSALNVWHMVGSSIKIADAVRGWLGRRPALDQIPFCGCAVAAVDGCLYVIGGFSKALPMKCVRKYDPTLNVWSEVSSMSVGRAYCKTSVLNNKLFVVGGVSRGRGGLTPLQSAEVFDPQTGAWSEVPSMPFSKAQVLPTAFLADLLKPIATGMTSYKGKLYVSQSLYCWPFFVDVGGEVYDPDSNSWFEMPVGMGEGWPARQAGTKVSVIVEDDLYALDPSTSLDSARIKTYDYEGDTWKVVDGDVPIRDFAESESPYLLSGLLGKLHVITKDANQNILVMQADKQNHLESSASTADLIQG----SLQESVVQSETNIWTVIATKNASSAELISCQVLDM 473
MGA LSLNN +A +EVS SEA KRQ+TSSSFW++NPRLIPSLPDEISIQILARLPRIC+ + KLVSRSWKA + S ELY+LRKELGT E+WLYILTK G+KLVW ALDP S+ WQ+LPLMPNV+AEDG RRGLS L +WHMVGSSI IAD +RGWLGRR ALD+IPFCGCA+ AVDGCLYV+GGF +A MK V +YDPT+N WSEV+ MS+GRAYCKT VLNNKL+VVGGV+RGRGGLTPLQSAEVFDP++G W+E+PSMPFSKAQVLPTAFLADLLKPIATGMTSY+GKLYV QSLYCWPFFVDVGGEVYDP+++SW EMPVGMGEGWPA+QAGTK+SV VE DLYALDPS+SLDSARIK YD++ D WK ++GDVPI D +SESPYLLS LGKL+V+TKD N NILVMQAD+Q+ L+S+ ST+ G L ++V++S +IW VIA++ A SAEL+SCQ+L++
Sbjct: 1 MGARLSLNNHKA--TEPFEVSQSEASKRQKTSSSFWDENPRLIPSLPDEISIQILARLPRICHFNAKLVSRSWKAALMSGELYQLRKELGTTEEWLYILTKLGGEKLVWHALDPVSRIWQRLPLMPNVSAEDGMRRGLSGLRLWHMVGSSI-IADTIRGWLGRRDALDEIPFCGCAIGAVDGCLYVMGGFCRASAMKSVWRYDPTVNAWSEVTPMSIGRAYCKTGVLNNKLYVVGGVTRGRGGLTPLQSAEVFDPRSGIWTEIPSMPFSKAQVLPTAFLADLLKPIATGMTSYRGKLYVPQSLYCWPFFVDVGGEVYDPETDSWAEMPVGMGEGWPAKQAGTKLSVTVEGDLYALDPSSSLDSARIKVYDHQDDAWKTIEGDVPIPDLTDSESPYLLSSFLGKLNVVTKDVNHNILVMQADRQHQLDSAPSTSSATFGESLEELSQNVLESSGSIWKVIASRIAGSAELVSCQILNI 474
BLAST of XM_017359528.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3Z580 ((F-box/kelch-repeat protein At1g22040-like {ECO:0000313|RefSeq:XP_016459501.1, ECO:0000313|RefSeq:XP_016459502.1}))
HSP 1 Score: 706.442 bits (1822), Expect = 0.000e+0
Identity = 333/474 (70.25%), Postives = 396/474 (83.54%), Query Frame = 0
Match: A0A1S3Z580 ((F-box/kelch-repeat protein At1g22040-like {ECO:0000313|RefSeq:XP_016459501.1, ECO:0000313|RefSeq:XP_016459502.1}))
HSP 1 Score: 706.442 bits (1822), Expect = 0.000e+0
Identity = 333/474 (70.25%), Postives = 396/474 (83.54%), Query Frame = 0
Query: 1 MGALLSLNNTRARTNNLYEVSSSEACKRQRTSSSFWEDNPRLIPSLPDEISIQILARLPRICYLDMKLVSRSWKAVITSAELYKLRKELGTAEQWLYILTKFDGDKLVWFALDPHSKRWQKLPLMPNVAAEDGSRRGLSALNVWHMVGSSIKIADAVRGWLGRRPALDQIPFCGCAVAAVDGCLYVIGGFSKALPMKCVRKYDPTLNVWSEVSSMSVGRAYCKTSVLNNKLFVVGGVSRGRGGLTPLQSAEVFDPQTGAWSEVPSMPFSKAQVLPTAFLADLLKPIATGMTSYKGKLYVSQSLYCWPFFVDVGGEVYDPDSNSWFEMPVGMGEGWPARQAGTKVSVIVEDDLYALDPSTSLDSARIKTYDYEGDTWKVVDGDVPIRDFAESESPYLLSGLLGKLHVITKDANQNILVMQADKQNHLESSAST-ADLIQGSLQESVVQSETNIWTVIATKNASSAELISCQVLDM 473
MG +LS +N ++ L E S S ACKRQRTS SFWE +PRLIPSLPDEISIQILARLPRI +L KLVSRSWKA + S+ELY+ RKELGT E+WLY+LTK DGDKL+W+A DP S +WQ+LP MP +A DG + GLS L W++V SSI+IADA+RGWLGR+ ALDQ+PFCGCA+ AVDGCLY +GGF +A M V +YDP +N W+EVS MS+ RAYCKT VLN KL+VVGGV+R RGGLTPLQSAEVFDP TG WSEVPSMPFSKAQ+LPTAFLADLLKPIATGMTSY+GKLYV QSLYCWPFFVDVGGEVYDP++N+W EMP+GMG+GWPARQAGTK+SV VE +LYALDPST+LDSARIK YD++ D+WKV++GD+PI D +SESPYLL+G LGKLHVITKDAN NI+VMQAD+QNHL S ST ++ I + E V+ SE N+W VIA+++ SAEL+SCQ+LD+
Sbjct: 1 MGGVLSRSNHKSNVGELIEGSQSAACKRQRTSDSFWEHSPRLIPSLPDEISIQILARLPRIHHLSAKLVSRSWKAAVMSSELYRCRKELGTTEEWLYLLTKTDGDKLLWYAFDPISIKWQRLPPMPAMAVNDGPKSGLSGLRAWNVVDSSIRIADAIRGWLGRKNALDQVPFCGCAIGAVDGCLYALGGFFRAAAMTSVWRYDPIVNSWNEVSPMSIARAYCKTGVLNGKLYVVGGVTRDRGGLTPLQSAEVFDPHTGVWSEVPSMPFSKAQMLPTAFLADLLKPIATGMTSYQGKLYVPQSLYCWPFFVDVGGEVYDPETNAWVEMPIGMGDGWPARQAGTKLSVTVEGELYALDPSTTLDSARIKVYDHQDDSWKVIEGDIPIND--DSESPYLLAGFLGKLHVITKDANHNIMVMQADRQNHLVPSPSTSSNKIVHEVPELVLGSEANMWRVIASRSGGSAELVSCQILDV 472
BLAST of XM_017359528.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7Y372 ((F-box/kelch-repeat protein At1g22040 {ECO:0000313|RefSeq:XP_009798576.1, ECO:0000313|RefSeq:XP_009798577.1}))
HSP 1 Score: 706.057 bits (1821), Expect = 0.000e+0
Identity = 333/474 (70.25%), Postives = 396/474 (83.54%), Query Frame = 0
Match: A0A1U7Y372 ((F-box/kelch-repeat protein At1g22040 {ECO:0000313|RefSeq:XP_009798576.1, ECO:0000313|RefSeq:XP_009798577.1}))
HSP 1 Score: 706.057 bits (1821), Expect = 0.000e+0
Identity = 333/474 (70.25%), Postives = 396/474 (83.54%), Query Frame = 0
Query: 1 MGALLSLNNTRARTNNLYEVSSSEACKRQRTSSSFWEDNPRLIPSLPDEISIQILARLPRICYLDMKLVSRSWKAVITSAELYKLRKELGTAEQWLYILTKFDGDKLVWFALDPHSKRWQKLPLMPNVAAEDGSRRGLSALNVWHMVGSSIKIADAVRGWLGRRPALDQIPFCGCAVAAVDGCLYVIGGFSKALPMKCVRKYDPTLNVWSEVSSMSVGRAYCKTSVLNNKLFVVGGVSRGRGGLTPLQSAEVFDPQTGAWSEVPSMPFSKAQVLPTAFLADLLKPIATGMTSYKGKLYVSQSLYCWPFFVDVGGEVYDPDSNSWFEMPVGMGEGWPARQAGTKVSVIVEDDLYALDPSTSLDSARIKTYDYEGDTWKVVDGDVPIRDFAESESPYLLSGLLGKLHVITKDANQNILVMQADKQNHLESSAST-ADLIQGSLQESVVQSETNIWTVIATKNASSAELISCQVLDM 473
MG +LS +N ++ L E S S ACKRQRTS SFWE +PRLIPSLPDEISIQILARLPRI +L KLVSRSWKA + S+ELY+ RKELGT E+WLY+LTK DGDKL+W+A DP S +WQ+LP MP +A DG + GLS L W++V SSI+IADA+RGWLGR+ ALDQ+PFCGCA+ AVDGCLY +GGF +A M V +YDP +N W+EVS MS+ RAYCKT VLN KL+VVGGV+R RGGLTPLQSAEVFDP TG WSEVPSMPFSKAQ+LPTAFLADLLKPIATGMTSY+GKLYV QSLYCWPFFVDVGGEVYDP++N+W EMP+GMG+GWPARQAGTK+SV VE +LYALDPST+LDSARIK YD++ D+WKV++GD+PI D +SESPYLL+G LGKLHVITKDAN NI+VMQAD+QNHL S ST ++ I + E V+ SE N+W VIA+++ SAEL+SCQ+LD+
Sbjct: 1 MGGVLSRSNHKSNVGELIEGSQSAACKRQRTSDSFWEHSPRLIPSLPDEISIQILARLPRIYHLSAKLVSRSWKAAVMSSELYRCRKELGTTEEWLYLLTKTDGDKLLWYAFDPISIKWQRLPPMPAMAVNDGPKSGLSGLRAWNVVDSSIRIADAIRGWLGRKNALDQVPFCGCAIGAVDGCLYALGGFFRAAAMTSVWRYDPIVNSWNEVSPMSIARAYCKTGVLNGKLYVVGGVTRDRGGLTPLQSAEVFDPHTGVWSEVPSMPFSKAQMLPTAFLADLLKPIATGMTSYQGKLYVPQSLYCWPFFVDVGGEVYDPETNAWVEMPIGMGDGWPARQAGTKLSVTVEGELYALDPSTTLDSARIKVYDHQDDSWKVIEGDIPIND--DSESPYLLAGFLGKLHVITKDANHNIMVMQADRQNHLVPSPSTSSNKIVHEVPELVLGSEANMWRVIASRSGGSAELVSCQILDV 472
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5BSA4 | E-Value: 0.000e+0, PID: 77.57 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A5B7AII0 | E-Value: 0.000e+0, PID: 76.52 | (Putative F-box domain, cyclin-like protein {ECO:0... [more] |
| A0A6P6VUV8 | E-Value: 0.000e+0, PID: 73.49 | (F-box/kelch-repeat protein At1g22040-like {ECO:00... [more] |
| A0A6P6WBU0 | E-Value: 0.000e+0, PID: 73.07 | (F-box/kelch-repeat protein At1g22040-like {ECO:00... [more] |
| A0A068TMA7 | E-Value: 0.000e+0, PID: 73.49 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A5B7AM42 | E-Value: 0.000e+0, PID: 75.47 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A124SF21 | E-Value: 0.000e+0, PID: 73.57 | (F-box domain, cyclin-like protein {ECO:0000313|EM... [more] |
| A0A6I9U1Y8 | E-Value: 0.000e+0, PID: 73.17 | (F-box/kelch-repeat protein At1g22040 {ECO:0000313... [more] |
| A0A1S3Z580 | E-Value: 0.000e+0, PID: 70.25 | (F-box/kelch-repeat protein At1g22040-like {ECO:00... [more] |
| A0A1U7Y372 | E-Value: 0.000e+0, PID: 70.25 | (F-box/kelch-repeat protein At1g22040 {ECO:0000313... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |